[1] "ofn"        "-oTPAAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PAAD-TP/15107801/PAAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/15182489/transformed.cor.cli.txt"

nPatients in clinical file=185, in cluster file=146, common to both=146
[1] "Reduce the number of clustering variables from 201 to 190."
[1] 190 146
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
           123             23 
  KRAS MUTATED KRAS WILD-TYPE 
           123             23 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           100             46 
  TP53 MUTATED TP53 WILD-TYPE 
           100             46 
[1] "JMY MUTATION ANALYSIS"
[1] 3
  JMY MUTATED JMY WILD-TYPE 
           55            91 
  JMY MUTATED JMY WILD-TYPE 
           55            91 
[1] "RIOK1 MUTATION ANALYSIS"
[1] 3
  RIOK1 MUTATED RIOK1 WILD-TYPE 
             55              91 
  RIOK1 MUTATED RIOK1 WILD-TYPE 
             55              91 
[1] "LCE2A MUTATION ANALYSIS"
[1] 3
  LCE2A MUTATED LCE2A WILD-TYPE 
             46             100 
  LCE2A MUTATED LCE2A WILD-TYPE 
             46             100 
[1] "C1QB MUTATION ANALYSIS"
[1] 3
  C1QB MUTATED C1QB WILD-TYPE 
            35            111 
  C1QB MUTATED C1QB WILD-TYPE 
            35            111 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              30              116 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              30              116 
[1] "AEBP1 MUTATION ANALYSIS"
[1] 3
  AEBP1 MUTATED AEBP1 WILD-TYPE 
             26             120 
  AEBP1 MUTATED AEBP1 WILD-TYPE 
             26             120 
[1] "RBM47 MUTATION ANALYSIS"
[1] 3
  RBM47 MUTATED RBM47 WILD-TYPE 
             25             121 
  RBM47 MUTATED RBM47 WILD-TYPE 
             25             121 
[1] "ANKRD36 MUTATION ANALYSIS"
[1] 3
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
               24               122 
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
               24               122 
[1] "RFX1 MUTATION ANALYSIS"
[1] 3
  RFX1 MUTATED RFX1 WILD-TYPE 
            24            122 
  RFX1 MUTATED RFX1 WILD-TYPE 
            24            122 
[1] "TYRO3 MUTATION ANALYSIS"
[1] 3
  TYRO3 MUTATED TYRO3 WILD-TYPE 
             14             132 
  TYRO3 MUTATED TYRO3 WILD-TYPE 
             14             132 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             32             114 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             32             114 
[1] "GPR6 MUTATION ANALYSIS"
[1] 3
  GPR6 MUTATED GPR6 WILD-TYPE 
            12            134 
  GPR6 MUTATED GPR6 WILD-TYPE 
            12            134 
[1] "LZTS1 MUTATION ANALYSIS"
[1] 3
  LZTS1 MUTATED LZTS1 WILD-TYPE 
             10             136 
  LZTS1 MUTATED LZTS1 WILD-TYPE 
             10             136 
[1] "NCOA3 MUTATION ANALYSIS"
[1] 3
  NCOA3 MUTATED NCOA3 WILD-TYPE 
             14             132 
  NCOA3 MUTATED NCOA3 WILD-TYPE 
             14             132 
[1] "SIK3 MUTATION ANALYSIS"
[1] 3
  SIK3 MUTATED SIK3 WILD-TYPE 
            13            133 
  SIK3 MUTATED SIK3 WILD-TYPE 
            13            133 
[1] "ZMIZ2 MUTATION ANALYSIS"
[1] 3
  ZMIZ2 MUTATED ZMIZ2 WILD-TYPE 
             12             134 
  ZMIZ2 MUTATED ZMIZ2 WILD-TYPE 
             12             134 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
            16            130 
  IRS4 MUTATED IRS4 WILD-TYPE 
            16            130 
[1] "ESPN MUTATION ANALYSIS"
[1] 3
  ESPN MUTATED ESPN WILD-TYPE 
             6            140 
  ESPN MUTATED ESPN WILD-TYPE 
             6            140 
[1] "ATP2C1 MUTATION ANALYSIS"
[1] 3
  ATP2C1 MUTATED ATP2C1 WILD-TYPE 
               8              138 
  ATP2C1 MUTATED ATP2C1 WILD-TYPE 
               8              138 
[1] "FNDC1 MUTATION ANALYSIS"
[1] 3
  FNDC1 MUTATED FNDC1 WILD-TYPE 
             14             132 
  FNDC1 MUTATED FNDC1 WILD-TYPE 
             14             132 
[1] "TMEM91 MUTATION ANALYSIS"
[1] 3
  TMEM91 MUTATED TMEM91 WILD-TYPE 
               6              140 
  TMEM91 MUTATED TMEM91 WILD-TYPE 
               6              140 
[1] "SHROOM4 MUTATION ANALYSIS"
[1] 3
  SHROOM4 MUTATED SHROOM4 WILD-TYPE 
               11               135 
  SHROOM4 MUTATED SHROOM4 WILD-TYPE 
               11               135 
[1] "PABPC1 MUTATION ANALYSIS"
[1] 3
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               9              137 
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               9              137 
[1] "OGFOD1 MUTATION ANALYSIS"
[1] 3
  OGFOD1 MUTATED OGFOD1 WILD-TYPE 
               5              141 
  OGFOD1 MUTATED OGFOD1 WILD-TYPE 
               5              141 
[1] "DCP1B MUTATION ANALYSIS"
[1] 3
  DCP1B MUTATED DCP1B WILD-TYPE 
              9             137 
  DCP1B MUTATED DCP1B WILD-TYPE 
              9             137 
[1] "RBMX MUTATION ANALYSIS"
[1] 3
  RBMX MUTATED RBMX WILD-TYPE 
             5            141 
  RBMX MUTATED RBMX WILD-TYPE 
             5            141 
[1] "ZNF880 MUTATION ANALYSIS"
[1] 3
  ZNF880 MUTATED ZNF880 WILD-TYPE 
               4              142 
  ZNF880 MUTATED ZNF880 WILD-TYPE 
               4              142 
[1] "UBAC1 MUTATION ANALYSIS"
[1] 3
  UBAC1 MUTATED UBAC1 WILD-TYPE 
              5             141 
  UBAC1 MUTATED UBAC1 WILD-TYPE 
              5             141 
[1] "CASQ2 MUTATION ANALYSIS"
[1] 3
  CASQ2 MUTATED CASQ2 WILD-TYPE 
              8             138 
  CASQ2 MUTATED CASQ2 WILD-TYPE 
              8             138 
[1] "ZNF678 MUTATION ANALYSIS"
[1] 3
  ZNF678 MUTATED ZNF678 WILD-TYPE 
               5              141 
  ZNF678 MUTATED ZNF678 WILD-TYPE 
               5              141 
[1] "RBM12 MUTATION ANALYSIS"
[1] 3
  RBM12 MUTATED RBM12 WILD-TYPE 
              5             141 
  RBM12 MUTATED RBM12 WILD-TYPE 
              5             141 
[1] "VWA3A MUTATION ANALYSIS"
[1] 3
  VWA3A MUTATED VWA3A WILD-TYPE 
              5             141 
  VWA3A MUTATED VWA3A WILD-TYPE 
              5             141 
[1] "NBPF16 MUTATION ANALYSIS"
[1] 3
  NBPF16 MUTATED NBPF16 WILD-TYPE 
               7              139 
  NBPF16 MUTATED NBPF16 WILD-TYPE 
               7              139 
[1] "PARP10 MUTATION ANALYSIS"
[1] 3
  PARP10 MUTATED PARP10 WILD-TYPE 
               5              141 
  PARP10 MUTATED PARP10 WILD-TYPE 
               5              141 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               8              138 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               8              138 
[1] "HACL1 MUTATION ANALYSIS"
[1] 3
  HACL1 MUTATED HACL1 WILD-TYPE 
              5             141 
  HACL1 MUTATED HACL1 WILD-TYPE 
              5             141 
[1] "PRKRA MUTATION ANALYSIS"
[1] 3
  PRKRA MUTATED PRKRA WILD-TYPE 
              4             142 
  PRKRA MUTATED PRKRA WILD-TYPE 
              4             142 
[1] "SORBS2 MUTATION ANALYSIS"
[1] 3
  SORBS2 MUTATED SORBS2 WILD-TYPE 
               6              140 
  SORBS2 MUTATED SORBS2 WILD-TYPE 
               6              140 
[1] "CD86 MUTATION ANALYSIS"
[1] 3
  CD86 MUTATED CD86 WILD-TYPE 
             6            140 
  CD86 MUTATED CD86 WILD-TYPE 
             6            140 
[1] "RNF32 MUTATION ANALYSIS"
[1] 3
  RNF32 MUTATED RNF32 WILD-TYPE 
              5             141 
  RNF32 MUTATED RNF32 WILD-TYPE 
              5             141 
[1] "SDCBP MUTATION ANALYSIS"
[1] 3
  SDCBP MUTATED SDCBP WILD-TYPE 
              6             140 
  SDCBP MUTATED SDCBP WILD-TYPE 
              6             140 
[1] "CDC27 MUTATION ANALYSIS"
[1] 3
  CDC27 MUTATED CDC27 WILD-TYPE 
              7             139 
  CDC27 MUTATED CDC27 WILD-TYPE 
              7             139 
[1] "NLRP2 MUTATION ANALYSIS"
[1] 3
  NLRP2 MUTATED NLRP2 WILD-TYPE 
              6             140 
  NLRP2 MUTATED NLRP2 WILD-TYPE 
              6             140 
[1] "PLIN4 MUTATION ANALYSIS"
[1] 3
  PLIN4 MUTATED PLIN4 WILD-TYPE 
              7             139 
  PLIN4 MUTATED PLIN4 WILD-TYPE 
              7             139 
[1] "CBX3 MUTATION ANALYSIS"
[1] 3
  CBX3 MUTATED CBX3 WILD-TYPE 
             4            142 
  CBX3 MUTATED CBX3 WILD-TYPE 
             4            142 
[1] "SUZ12 MUTATION ANALYSIS"
[1] 3
  SUZ12 MUTATED SUZ12 WILD-TYPE 
              4             142 
  SUZ12 MUTATED SUZ12 WILD-TYPE 
              4             142 
[1] "MTBP MUTATION ANALYSIS"
[1] 3
  MTBP MUTATED MTBP WILD-TYPE 
             3            143 
  MTBP MUTATED MTBP WILD-TYPE 
             3            143 
[1] "SYT14 MUTATION ANALYSIS"
[1] 3
  SYT14 MUTATED SYT14 WILD-TYPE 
              4             142 
  SYT14 MUTATED SYT14 WILD-TYPE 
              4             142 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
              8             138 
  RNF43 MUTATED RNF43 WILD-TYPE 
              8             138 
[1] "AAK1 MUTATION ANALYSIS"
[1] 3
  AAK1 MUTATED AAK1 WILD-TYPE 
             4            142 
  AAK1 MUTATED AAK1 WILD-TYPE 
             4            142 
[1] "HSPE1 MUTATION ANALYSIS"
[1] 3
  HSPE1 MUTATED HSPE1 WILD-TYPE 
              4             142 
  HSPE1 MUTATED HSPE1 WILD-TYPE 
              4             142 
[1] "TMCC1 MUTATION ANALYSIS"
[1] 3
  TMCC1 MUTATED TMCC1 WILD-TYPE 
              7             139 
  TMCC1 MUTATED TMCC1 WILD-TYPE 
              7             139 
[1] "CFTR MUTATION ANALYSIS"
[1] 3
  CFTR MUTATED CFTR WILD-TYPE 
             7            139 
  CFTR MUTATED CFTR WILD-TYPE 
             7            139 
[1] "NAA20 MUTATION ANALYSIS"
[1] 3
  NAA20 MUTATED NAA20 WILD-TYPE 
              3             143 
  NAA20 MUTATED NAA20 WILD-TYPE 
              3             143 
[1] "TRPC4 MUTATION ANALYSIS"
[1] 3
  TRPC4 MUTATED TRPC4 WILD-TYPE 
              6             140 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
              6             140 
[1] "CHRNA9 MUTATION ANALYSIS"
[1] 3
  CHRNA9 MUTATED CHRNA9 WILD-TYPE 
               4              142 
  CHRNA9 MUTATED CHRNA9 WILD-TYPE 
               4              142 
[1] "SP140 MUTATION ANALYSIS"
[1] 3
  SP140 MUTATED SP140 WILD-TYPE 
              5             141 
  SP140 MUTATED SP140 WILD-TYPE 
              5             141 
[1] "KCNA7 MUTATION ANALYSIS"
[1] 3
  KCNA7 MUTATED KCNA7 WILD-TYPE 
              5             141 
  KCNA7 MUTATED KCNA7 WILD-TYPE 
              5             141 
[1] "AQP7 MUTATION ANALYSIS"
[1] 3
  AQP7 MUTATED AQP7 WILD-TYPE 
             7            139 
  AQP7 MUTATED AQP7 WILD-TYPE 
             7            139 
[1] "SKA3 MUTATION ANALYSIS"
[1] 3
  SKA3 MUTATED SKA3 WILD-TYPE 
             6            140 
  SKA3 MUTATED SKA3 WILD-TYPE 
             6            140 
[1] "DAAM1 MUTATION ANALYSIS"
[1] 3
  DAAM1 MUTATED DAAM1 WILD-TYPE 
              6             140 
  DAAM1 MUTATED DAAM1 WILD-TYPE 
              6             140 
[1] "MSH2 MUTATION ANALYSIS"
[1] 3
  MSH2 MUTATED MSH2 WILD-TYPE 
             4            142 
  MSH2 MUTATED MSH2 WILD-TYPE 
             4            142 
[1] "NUP210L MUTATION ANALYSIS"
[1] 3
  NUP210L MUTATED NUP210L WILD-TYPE 
                5               141 
  NUP210L MUTATED NUP210L WILD-TYPE 
                5               141 
[1] "GPR98 MUTATION ANALYSIS"
[1] 3
  GPR98 MUTATED GPR98 WILD-TYPE 
              8             138 
  GPR98 MUTATED GPR98 WILD-TYPE 
              8             138 
[1] "CD2AP MUTATION ANALYSIS"
[1] 3
  CD2AP MUTATED CD2AP WILD-TYPE 
              3             143 
  CD2AP MUTATED CD2AP WILD-TYPE 
              3             143 
[1] "RREB1 MUTATION ANALYSIS"
[1] 3
  RREB1 MUTATED RREB1 WILD-TYPE 
              9             137 
  RREB1 MUTATED RREB1 WILD-TYPE 
              9             137 
[1] "KIAA0586 MUTATION ANALYSIS"
[1] 3
  KIAA0586 MUTATED KIAA0586 WILD-TYPE 
                 6                140 
  KIAA0586 MUTATED KIAA0586 WILD-TYPE 
                 6                140 
[1] "GNAS MUTATION ANALYSIS"
[1] 3
  GNAS MUTATED GNAS WILD-TYPE 
             9            137 
  GNAS MUTATED GNAS WILD-TYPE 
             9            137 
[1] "FAR1 MUTATION ANALYSIS"
[1] 3
  FAR1 MUTATED FAR1 WILD-TYPE 
             4            142 
  FAR1 MUTATED FAR1 WILD-TYPE 
             4            142 
[1] "OR2T4 MUTATION ANALYSIS"
[1] 3
  OR2T4 MUTATED OR2T4 WILD-TYPE 
              6             140 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
              6             140 
[1] "GPR50 MUTATION ANALYSIS"
[1] 3
  GPR50 MUTATED GPR50 WILD-TYPE 
              5             141 
  GPR50 MUTATED GPR50 WILD-TYPE 
              5             141 
[1] "TAX1BP1 MUTATION ANALYSIS"
[1] 3
  TAX1BP1 MUTATED TAX1BP1 WILD-TYPE 
                5               141 
  TAX1BP1 MUTATED TAX1BP1 WILD-TYPE 
                5               141 
[1] "CCDC33 MUTATION ANALYSIS"
[1] 3
  CCDC33 MUTATED CCDC33 WILD-TYPE 
               3              143 
  CCDC33 MUTATED CCDC33 WILD-TYPE 
               3              143 
[1] "JAK2 MUTATION ANALYSIS"
[1] 3
  JAK2 MUTATED JAK2 WILD-TYPE 
             4            142 
  JAK2 MUTATED JAK2 WILD-TYPE 
             4            142 
[1] "COL28A1 MUTATION ANALYSIS"
[1] 3
  COL28A1 MUTATED COL28A1 WILD-TYPE 
                5               141 
  COL28A1 MUTATED COL28A1 WILD-TYPE 
                5               141 
[1] "KLHL20 MUTATION ANALYSIS"
[1] 3
  KLHL20 MUTATED KLHL20 WILD-TYPE 
               3              143 
  KLHL20 MUTATED KLHL20 WILD-TYPE 
               3              143 
[1] "WRN MUTATION ANALYSIS"
[1] 3
  WRN MUTATED WRN WILD-TYPE 
            4           142 
  WRN MUTATED WRN WILD-TYPE 
            4           142 
[1] "P2RY1 MUTATION ANALYSIS"
[1] 3
  P2RY1 MUTATED P2RY1 WILD-TYPE 
              5             141 
  P2RY1 MUTATED P2RY1 WILD-TYPE 
              5             141 
[1] "RBL2 MUTATION ANALYSIS"
[1] 3
  RBL2 MUTATED RBL2 WILD-TYPE 
             4            142 
  RBL2 MUTATED RBL2 WILD-TYPE 
             4            142 
[1] "BCLAF1 MUTATION ANALYSIS"
[1] 3
  BCLAF1 MUTATED BCLAF1 WILD-TYPE 
               7              139 
  BCLAF1 MUTATED BCLAF1 WILD-TYPE 
               7              139 
[1] "MORF4L1 MUTATION ANALYSIS"
[1] 3
  MORF4L1 MUTATED MORF4L1 WILD-TYPE 
                3               143 
  MORF4L1 MUTATED MORF4L1 WILD-TYPE 
                3               143 
[1] "SEPHS2 MUTATION ANALYSIS"
[1] 3
  SEPHS2 MUTATED SEPHS2 WILD-TYPE 
               5              141 
  SEPHS2 MUTATED SEPHS2 WILD-TYPE 
               5              141 
[1] "HELZ MUTATION ANALYSIS"
[1] 3
  HELZ MUTATED HELZ WILD-TYPE 
             5            141 
  HELZ MUTATED HELZ WILD-TYPE 
             5            141 
[1] "DOCK8 MUTATION ANALYSIS"
[1] 3
  DOCK8 MUTATED DOCK8 WILD-TYPE 
              5             141 
  DOCK8 MUTATED DOCK8 WILD-TYPE 
              5             141 
[1] "KLK13 MUTATION ANALYSIS"
[1] 3
  KLK13 MUTATED KLK13 WILD-TYPE 
              5             141 
  KLK13 MUTATED KLK13 WILD-TYPE 
              5             141 
[1] "OXR1 MUTATION ANALYSIS"
[1] 3
  OXR1 MUTATED OXR1 WILD-TYPE 
             4            142 
  OXR1 MUTATED OXR1 WILD-TYPE 
             4            142 
[1] "OR52D1 MUTATION ANALYSIS"
[1] 3
  OR52D1 MUTATED OR52D1 WILD-TYPE 
               4              142 
  OR52D1 MUTATED OR52D1 WILD-TYPE 
               4              142 
[1] "CSTF2T MUTATION ANALYSIS"
[1] 3
  CSTF2T MUTATED CSTF2T WILD-TYPE 
               3              143 
  CSTF2T MUTATED CSTF2T WILD-TYPE 
               3              143 
[1] "AP3B1 MUTATION ANALYSIS"
[1] 3
  AP3B1 MUTATED AP3B1 WILD-TYPE 
              4             142 
  AP3B1 MUTATED AP3B1 WILD-TYPE 
              4             142 
[1] "OMA1 MUTATION ANALYSIS"
[1] 3
  OMA1 MUTATED OMA1 WILD-TYPE 
             3            143 
  OMA1 MUTATED OMA1 WILD-TYPE 
             3            143 
[1] "IYD MUTATION ANALYSIS"
[1] 3
  IYD MUTATED IYD WILD-TYPE 
            6           140 
  IYD MUTATED IYD WILD-TYPE 
            6           140 
[1] "NBPF9 MUTATION ANALYSIS"
[1] 3
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              3             143 
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              3             143 
[1] "PRSS3 MUTATION ANALYSIS"
[1] 3
  PRSS3 MUTATED PRSS3 WILD-TYPE 
              3             143 
  PRSS3 MUTATED PRSS3 WILD-TYPE 
              3             143 
[1] "COBL MUTATION ANALYSIS"
[1] 3
  COBL MUTATED COBL WILD-TYPE 
             6            140 
  COBL MUTATED COBL WILD-TYPE 
             6            140 
[1] "SORT1 MUTATION ANALYSIS"
[1] 3
  SORT1 MUTATED SORT1 WILD-TYPE 
              5             141 
  SORT1 MUTATED SORT1 WILD-TYPE 
              5             141 
[1] "SSBP3 MUTATION ANALYSIS"
[1] 3
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              3             143 
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              3             143 
[1] "GPSM2 MUTATION ANALYSIS"
[1] 3
  GPSM2 MUTATED GPSM2 WILD-TYPE 
              3             143 
  GPSM2 MUTATED GPSM2 WILD-TYPE 
              3             143 
[1] "EEF2 MUTATION ANALYSIS"
[1] 3
  EEF2 MUTATED EEF2 WILD-TYPE 
             5            141 
  EEF2 MUTATED EEF2 WILD-TYPE 
             5            141 
[1] "ZACN MUTATION ANALYSIS"
[1] 3
  ZACN MUTATED ZACN WILD-TYPE 
             3            143 
  ZACN MUTATED ZACN WILD-TYPE 
             3            143 
[1] "ZMYM2 MUTATION ANALYSIS"
[1] 3
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              3             143 
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              3             143 
[1] "GSN MUTATION ANALYSIS"
[1] 3
  GSN MUTATED GSN WILD-TYPE 
            4           142 
  GSN MUTATED GSN WILD-TYPE 
            4           142 
[1] "TGFBR1 MUTATION ANALYSIS"
[1] 3
  TGFBR1 MUTATED TGFBR1 WILD-TYPE 
               8              138 
  TGFBR1 MUTATED TGFBR1 WILD-TYPE 
               8              138 
[1] "MLPH MUTATION ANALYSIS"
[1] 3
  MLPH MUTATED MLPH WILD-TYPE 
             3            143 
  MLPH MUTATED MLPH WILD-TYPE 
             3            143 
[1] "UBXN4 MUTATION ANALYSIS"
[1] 3
  UBXN4 MUTATED UBXN4 WILD-TYPE 
              3             143 
  UBXN4 MUTATED UBXN4 WILD-TYPE 
              3             143 
[1] "KCNE1 MUTATION ANALYSIS"
[1] 3
  KCNE1 MUTATED KCNE1 WILD-TYPE 
              4             142 
  KCNE1 MUTATED KCNE1 WILD-TYPE 
              4             142 
[1] "RTTN MUTATION ANALYSIS"
[1] 3
  RTTN MUTATED RTTN WILD-TYPE 
             5            141 
  RTTN MUTATED RTTN WILD-TYPE 
             5            141 
[1] "FAM8A1 MUTATION ANALYSIS"
[1] 3
  FAM8A1 MUTATED FAM8A1 WILD-TYPE 
               4              142 
  FAM8A1 MUTATED FAM8A1 WILD-TYPE 
               4              142 
[1] "ACTRT2 MUTATION ANALYSIS"
[1] 3
  ACTRT2 MUTATED ACTRT2 WILD-TYPE 
               3              143 
  ACTRT2 MUTATED ACTRT2 WILD-TYPE 
               3              143 
[1] "DNAH7 MUTATION ANALYSIS"
[1] 3
  DNAH7 MUTATED DNAH7 WILD-TYPE 
              7             139 
  DNAH7 MUTATED DNAH7 WILD-TYPE 
              7             139 
[1] "OR1N2 MUTATION ANALYSIS"
[1] 3
  OR1N2 MUTATED OR1N2 WILD-TYPE 
              5             141 
  OR1N2 MUTATED OR1N2 WILD-TYPE 
              5             141 
[1] "BRD8 MUTATION ANALYSIS"
[1] 3
  BRD8 MUTATED BRD8 WILD-TYPE 
             3            143 
  BRD8 MUTATED BRD8 WILD-TYPE 
             3            143 
[1] "MIPEP MUTATION ANALYSIS"
[1] 3
  MIPEP MUTATED MIPEP WILD-TYPE 
              3             143 
  MIPEP MUTATED MIPEP WILD-TYPE 
              3             143 
[1] "SIGLEC14 MUTATION ANALYSIS"
[1] 3
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 3                143 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 3                143 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
               7              139 
  ARID1A MUTATED ARID1A WILD-TYPE 
               7              139 
[1] "POM121 MUTATION ANALYSIS"
[1] 3
  POM121 MUTATED POM121 WILD-TYPE 
               5              141 
  POM121 MUTATED POM121 WILD-TYPE 
               5              141 
[1] "LCP2 MUTATION ANALYSIS"
[1] 3
  LCP2 MUTATED LCP2 WILD-TYPE 
             3            143 
  LCP2 MUTATED LCP2 WILD-TYPE 
             3            143 
[1] "L1CAM MUTATION ANALYSIS"
[1] 3
  L1CAM MUTATED L1CAM WILD-TYPE 
              6             140 
  L1CAM MUTATED L1CAM WILD-TYPE 
              6             140 
[1] "ABCG5 MUTATION ANALYSIS"
[1] 3
  ABCG5 MUTATED ABCG5 WILD-TYPE 
              3             143 
  ABCG5 MUTATED ABCG5 WILD-TYPE 
              3             143 
[1] "KRT2 MUTATION ANALYSIS"
[1] 3
  KRT2 MUTATED KRT2 WILD-TYPE 
             5            141 
  KRT2 MUTATED KRT2 WILD-TYPE 
             5            141 
[1] "ZNF780A MUTATION ANALYSIS"
[1] 3
  ZNF780A MUTATED ZNF780A WILD-TYPE 
                5               141 
  ZNF780A MUTATED ZNF780A WILD-TYPE 
                5               141 
[1] "DDX4 MUTATION ANALYSIS"
[1] 3
  DDX4 MUTATED DDX4 WILD-TYPE 
             5            141 
  DDX4 MUTATED DDX4 WILD-TYPE 
             5            141 
[1] "BTN2A1 MUTATION ANALYSIS"
[1] 3
  BTN2A1 MUTATED BTN2A1 WILD-TYPE 
               3              143 
  BTN2A1 MUTATED BTN2A1 WILD-TYPE 
               3              143 
[1] "TDRD5 MUTATION ANALYSIS"
[1] 3
  TDRD5 MUTATED TDRD5 WILD-TYPE 
              4             142 
  TDRD5 MUTATED TDRD5 WILD-TYPE 
              4             142 
[1] "OR2A14 MUTATION ANALYSIS"
[1] 3
  OR2A14 MUTATED OR2A14 WILD-TYPE 
               4              142 
  OR2A14 MUTATED OR2A14 WILD-TYPE 
               4              142 
[1] "PBRM1 MUTATION ANALYSIS"
[1] 3
  PBRM1 MUTATED PBRM1 WILD-TYPE 
              5             141 
  PBRM1 MUTATED PBRM1 WILD-TYPE 
              5             141 
[1] "SEPT2 MUTATION ANALYSIS"
[1] 3
  SEPT2 MUTATED SEPT2 WILD-TYPE 
              3             143 
  SEPT2 MUTATED SEPT2 WILD-TYPE 
              3             143 
[1] "WDHD1 MUTATION ANALYSIS"
[1] 3
  WDHD1 MUTATED WDHD1 WILD-TYPE 
              3             143 
  WDHD1 MUTATED WDHD1 WILD-TYPE 
              3             143 
[1] "ANKRD49 MUTATION ANALYSIS"
[1] 3
  ANKRD49 MUTATED ANKRD49 WILD-TYPE 
                3               143 
  ANKRD49 MUTATED ANKRD49 WILD-TYPE 
                3               143 
[1] "PAPSS2 MUTATION ANALYSIS"
[1] 3
  PAPSS2 MUTATED PAPSS2 WILD-TYPE 
               4              142 
  PAPSS2 MUTATED PAPSS2 WILD-TYPE 
               4              142 
[1] "GPRC6A MUTATION ANALYSIS"
[1] 3
  GPRC6A MUTATED GPRC6A WILD-TYPE 
               5              141 
  GPRC6A MUTATED GPRC6A WILD-TYPE 
               5              141 
[1] "PDXDC1 MUTATION ANALYSIS"
[1] 3
  PDXDC1 MUTATED PDXDC1 WILD-TYPE 
               3              143 
  PDXDC1 MUTATED PDXDC1 WILD-TYPE 
               3              143 
[1] "TGM5 MUTATION ANALYSIS"
[1] 3
  TGM5 MUTATED TGM5 WILD-TYPE 
             4            142 
  TGM5 MUTATED TGM5 WILD-TYPE 
             4            142 
[1] "NUP54 MUTATION ANALYSIS"
[1] 3
  NUP54 MUTATED NUP54 WILD-TYPE 
              3             143 
  NUP54 MUTATED NUP54 WILD-TYPE 
              3             143 
[1] "NLRP6 MUTATION ANALYSIS"
[1] 3
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              3             143 
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              3             143 
[1] "DHX35 MUTATION ANALYSIS"
[1] 3
  DHX35 MUTATED DHX35 WILD-TYPE 
              4             142 
  DHX35 MUTATED DHX35 WILD-TYPE 
              4             142 
[1] "CEACAM4 MUTATION ANALYSIS"
[1] 3
  CEACAM4 MUTATED CEACAM4 WILD-TYPE 
                4               142 
  CEACAM4 MUTATED CEACAM4 WILD-TYPE 
                4               142 
[1] "MMP13 MUTATION ANALYSIS"
[1] 3
  MMP13 MUTATED MMP13 WILD-TYPE 
              3             143 
  MMP13 MUTATED MMP13 WILD-TYPE 
              3             143 
[1] "SYCP2 MUTATION ANALYSIS"
[1] 3
  SYCP2 MUTATED SYCP2 WILD-TYPE 
              5             141 
  SYCP2 MUTATED SYCP2 WILD-TYPE 
              5             141 
[1] "LACTB MUTATION ANALYSIS"
[1] 3
  LACTB MUTATED LACTB WILD-TYPE 
              3             143 
  LACTB MUTATED LACTB WILD-TYPE 
              3             143 
[1] "TEKT4 MUTATION ANALYSIS"
[1] 3
  TEKT4 MUTATED TEKT4 WILD-TYPE 
              6             140 
  TEKT4 MUTATED TEKT4 WILD-TYPE 
              6             140 
[1] "MC3R MUTATION ANALYSIS"
[1] 3
  MC3R MUTATED MC3R WILD-TYPE 
             4            142 
  MC3R MUTATED MC3R WILD-TYPE 
             4            142 
[1] "CSRNP3 MUTATION ANALYSIS"
[1] 3
  CSRNP3 MUTATED CSRNP3 WILD-TYPE 
               4              142 
  CSRNP3 MUTATED CSRNP3 WILD-TYPE 
               4              142 
[1] "PHF15 MUTATION ANALYSIS"
[1] 3
  PHF15 MUTATED PHF15 WILD-TYPE 
              4             142 
  PHF15 MUTATED PHF15 WILD-TYPE 
              4             142 
[1] "ZBTB4 MUTATION ANALYSIS"
[1] 3
  ZBTB4 MUTATED ZBTB4 WILD-TYPE 
              4             142 
  ZBTB4 MUTATED ZBTB4 WILD-TYPE 
              4             142 
[1] "RSPO1 MUTATION ANALYSIS"
[1] 3
  RSPO1 MUTATED RSPO1 WILD-TYPE 
              3             143 
  RSPO1 MUTATED RSPO1 WILD-TYPE 
              3             143 
[1] "WWP2 MUTATION ANALYSIS"
[1] 3
  WWP2 MUTATED WWP2 WILD-TYPE 
             5            141 
  WWP2 MUTATED WWP2 WILD-TYPE 
             5            141 
[1] "CPNE2 MUTATION ANALYSIS"
[1] 3
  CPNE2 MUTATED CPNE2 WILD-TYPE 
              3             143 
  CPNE2 MUTATED CPNE2 WILD-TYPE 
              3             143 
[1] "WDR36 MUTATION ANALYSIS"
[1] 3
  WDR36 MUTATED WDR36 WILD-TYPE 
              3             143 
  WDR36 MUTATED WDR36 WILD-TYPE 
              3             143 
[1] "CYTH4 MUTATION ANALYSIS"
[1] 3
  CYTH4 MUTATED CYTH4 WILD-TYPE 
              3             143 
  CYTH4 MUTATED CYTH4 WILD-TYPE 
              3             143 
[1] "BOC MUTATION ANALYSIS"
[1] 3
  BOC MUTATED BOC WILD-TYPE 
            4           142 
  BOC MUTATED BOC WILD-TYPE 
            4           142 
[1] "C5ORF51 MUTATION ANALYSIS"
[1] 3
  C5ORF51 MUTATED C5ORF51 WILD-TYPE 
                3               143 
  C5ORF51 MUTATED C5ORF51 WILD-TYPE 
                3               143 
[1] "LILRB2 MUTATION ANALYSIS"
[1] 3
  LILRB2 MUTATED LILRB2 WILD-TYPE 
               4              142 
  LILRB2 MUTATED LILRB2 WILD-TYPE 
               4              142 
[1] "FLVCR1 MUTATION ANALYSIS"
[1] 3
  FLVCR1 MUTATED FLVCR1 WILD-TYPE 
               3              143 
  FLVCR1 MUTATED FLVCR1 WILD-TYPE 
               3              143 
[1] "ZNF483 MUTATION ANALYSIS"
[1] 3
  ZNF483 MUTATED ZNF483 WILD-TYPE 
               4              142 
  ZNF483 MUTATED ZNF483 WILD-TYPE 
               4              142 
[1] "NDUFV2 MUTATION ANALYSIS"
[1] 3
  NDUFV2 MUTATED NDUFV2 WILD-TYPE 
               3              143 
  NDUFV2 MUTATED NDUFV2 WILD-TYPE 
               3              143 
[1] "PSMB4 MUTATION ANALYSIS"
[1] 3
  PSMB4 MUTATED PSMB4 WILD-TYPE 
              4             142 
  PSMB4 MUTATED PSMB4 WILD-TYPE 
              4             142 
[1] "KIAA1045 MUTATION ANALYSIS"
[1] 3
  KIAA1045 MUTATED KIAA1045 WILD-TYPE 
                 5                141 
  KIAA1045 MUTATED KIAA1045 WILD-TYPE 
                 5                141 
[1] "KLK15 MUTATION ANALYSIS"
[1] 3
  KLK15 MUTATED KLK15 WILD-TYPE 
              5             141 
  KLK15 MUTATED KLK15 WILD-TYPE 
              5             141 
[1] "ZNF660 MUTATION ANALYSIS"
[1] 3
  ZNF660 MUTATED ZNF660 WILD-TYPE 
               3              143 
  ZNF660 MUTATED ZNF660 WILD-TYPE 
               3              143 
[1] "CCDC87 MUTATION ANALYSIS"
[1] 3
  CCDC87 MUTATED CCDC87 WILD-TYPE 
               3              143 
  CCDC87 MUTATED CCDC87 WILD-TYPE 
               3              143 
[1] "KIF4B MUTATION ANALYSIS"
[1] 3
  KIF4B MUTATED KIF4B WILD-TYPE 
              5             141 
  KIF4B MUTATED KIF4B WILD-TYPE 
              5             141 
[1] "ENPP7 MUTATION ANALYSIS"
[1] 3
  ENPP7 MUTATED ENPP7 WILD-TYPE 
              5             141 
  ENPP7 MUTATED ENPP7 WILD-TYPE 
              5             141 
[1] "TNRC6C MUTATION ANALYSIS"
[1] 3
  TNRC6C MUTATED TNRC6C WILD-TYPE 
               6              140 
  TNRC6C MUTATED TNRC6C WILD-TYPE 
               6              140 
[1] "NAA40 MUTATION ANALYSIS"
[1] 3
  NAA40 MUTATED NAA40 WILD-TYPE 
              3             143 
  NAA40 MUTATED NAA40 WILD-TYPE 
              3             143 
[1] "AKAP13 MUTATION ANALYSIS"
[1] 3
  AKAP13 MUTATED AKAP13 WILD-TYPE 
               6              140 
  AKAP13 MUTATED AKAP13 WILD-TYPE 
               6              140 
[1] "ASH1L MUTATION ANALYSIS"
[1] 3
  ASH1L MUTATED ASH1L WILD-TYPE 
              6             140 
  ASH1L MUTATED ASH1L WILD-TYPE 
              6             140 
[1] "ATP2C2 MUTATION ANALYSIS"
[1] 3
  ATP2C2 MUTATED ATP2C2 WILD-TYPE 
               4              142 
  ATP2C2 MUTATED ATP2C2 WILD-TYPE 
               4              142 
[1] "ANKRD30A MUTATION ANALYSIS"
[1] 3
  ANKRD30A MUTATED ANKRD30A WILD-TYPE 
                 8                138 
  ANKRD30A MUTATED ANKRD30A WILD-TYPE 
                 8                138 
[1] "MKI67 MUTATION ANALYSIS"
[1] 3
  MKI67 MUTATED MKI67 WILD-TYPE 
              6             140 
  MKI67 MUTATED MKI67 WILD-TYPE 
              6             140 
[1] "FCGBP MUTATION ANALYSIS"
[1] 3
  FCGBP MUTATED FCGBP WILD-TYPE 
             12             134 
  FCGBP MUTATED FCGBP WILD-TYPE 
             12             134 
[1] "SRFBP1 MUTATION ANALYSIS"
[1] 3
  SRFBP1 MUTATED SRFBP1 WILD-TYPE 
               3              143 
  SRFBP1 MUTATED SRFBP1 WILD-TYPE 
               3              143 
[1] "NFKBIZ MUTATION ANALYSIS"
[1] 3
  NFKBIZ MUTATED NFKBIZ WILD-TYPE 
               4              142 
  NFKBIZ MUTATED NFKBIZ WILD-TYPE 
               4              142 
[1] "NBPF10 MUTATION ANALYSIS"
[1] 3
  NBPF10 MUTATED NBPF10 WILD-TYPE 
               5              141 
  NBPF10 MUTATED NBPF10 WILD-TYPE 
               5              141 
[1] "ZNF358 MUTATION ANALYSIS"
[1] 3
  ZNF358 MUTATED ZNF358 WILD-TYPE 
               4              142 
  ZNF358 MUTATED ZNF358 WILD-TYPE 
               4              142 
[1] "HIST1H2BK MUTATION ANALYSIS"
[1] 3
  HIST1H2BK MUTATED HIST1H2BK WILD-TYPE 
                  3                 143 
  HIST1H2BK MUTATED HIST1H2BK WILD-TYPE 
                  3                 143 
[1] "DDB1 MUTATION ANALYSIS"
[1] 3
  DDB1 MUTATED DDB1 WILD-TYPE 
             5            141 
  DDB1 MUTATED DDB1 WILD-TYPE 
             5            141 
[1] "BVES MUTATION ANALYSIS"
[1] 3
  BVES MUTATED BVES WILD-TYPE 
             4            142 
  BVES MUTATED BVES WILD-TYPE 
             4            142 
[1] "SLC26A3 MUTATION ANALYSIS"
[1] 3
  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
                3               143 
  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
                3               143 
[1] "CMYA5 MUTATION ANALYSIS"
[1] 3
  CMYA5 MUTATED CMYA5 WILD-TYPE 
              8             138 
  CMYA5 MUTATED CMYA5 WILD-TYPE 
              8             138 
[1] "CHSY3 MUTATION ANALYSIS"
[1] 3
  CHSY3 MUTATED CHSY3 WILD-TYPE 
              5             141 
  CHSY3 MUTATED CHSY3 WILD-TYPE 
              5             141 
[1] "AGAP6 MUTATION ANALYSIS"
[1] 3
  AGAP6 MUTATED AGAP6 WILD-TYPE 
              7             139 
  AGAP6 MUTATED AGAP6 WILD-TYPE 
              7             139 
[1] "NGF MUTATION ANALYSIS"
[1] 3
  NGF MUTATED NGF WILD-TYPE 
            4           142 
  NGF MUTATED NGF WILD-TYPE 
            4           142 
[1] "SARS2 MUTATION ANALYSIS"
[1] 3
  SARS2 MUTATED SARS2 WILD-TYPE 
              3             143 
  SARS2 MUTATED SARS2 WILD-TYPE 
              3             143 
[1] "ADORA3 MUTATION ANALYSIS"
[1] 3
  ADORA3 MUTATED ADORA3 WILD-TYPE 
               5              141 
  ADORA3 MUTATED ADORA3 WILD-TYPE 
               5              141 
[1] "LUZP1 MUTATION ANALYSIS"
[1] 3
  LUZP1 MUTATED LUZP1 WILD-TYPE 
              4             142 
  LUZP1 MUTATED LUZP1 WILD-TYPE 
              4             142 
[1] "ATP11B MUTATION ANALYSIS"
[1] 3
  ATP11B MUTATED ATP11B WILD-TYPE 
               4              142 
  ATP11B MUTATED ATP11B WILD-TYPE 
               4              142 
[1] "RAG1 MUTATION ANALYSIS"
[1] 3
  RAG1 MUTATED RAG1 WILD-TYPE 
             4            142 
  RAG1 MUTATED RAG1 WILD-TYPE 
             4            142 
[1] "HK2 MUTATION ANALYSIS"
[1] 3
  HK2 MUTATED HK2 WILD-TYPE 
            4           142 
  HK2 MUTATED HK2 WILD-TYPE 
            4           142 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 146 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 146 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       48     62     13
  KRAS WILD-TYPE     18      3      1
D1V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           48             18
  CLUS_2           62              3
  CLUS_3           13              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       33     23     43     24
  KRAS WILD-TYPE      5      6      2     10
D1V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           33              5
  CLUS_2           23              6
  CLUS_3           43              2
  CLUS_4           24             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED       29     14      7      9     12
  KRAS WILD-TYPE      5      2      4      2      1
D1V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           29              5
  CLUS_2           14              2
  CLUS_3            7              4
  CLUS_4            9              2
  CLUS_5           12              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRAS MUTATED       11     16     16      5      5     13      5
  KRAS WILD-TYPE      1      1      5      4      1      1      1
D1V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           11              1
  CLUS_2           16              1
  CLUS_3           16              5
  CLUS_4            5              4
  CLUS_5            5              1
  CLUS_6           13              1
  CLUS_7            5              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       64     35     24
  KRAS WILD-TYPE      7      8      8
D1V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           64              7
  CLUS_2           35              8
  CLUS_3           24              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       57     56     10
  KRAS WILD-TYPE     10      7      6
D1V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           57             10
  CLUS_2           56              7
  CLUS_3           10              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       56     29     24     14
  KRAS WILD-TYPE      6      7      4      6
D1V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           56              6
  CLUS_2           29              7
  CLUS_3           24              4
  CLUS_4           14              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       81     27     15
  KRAS WILD-TYPE      8      8      7
D1V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           81              8
  CLUS_2           27              8
  CLUS_3           15              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       54     39     28
  KRAS WILD-TYPE      8     12      3
D1V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           54              8
  CLUS_2           39             12
  CLUS_3           28              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       67     37     17
  KRAS WILD-TYPE      8      8      7
D1V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           67              8
  CLUS_2           37              8
  CLUS_3           17              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       35     56      9
  TP53 WILD-TYPE     31      9      5
D2V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           35             31
  CLUS_2           56              9
  CLUS_3            9              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       26     18     33     23
  TP53 WILD-TYPE     12     11     12     11
D2V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           26             12
  CLUS_2           18             11
  CLUS_3           33             12
  CLUS_4           23             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       23     11      5      7     10
  TP53 WILD-TYPE     11      5      6      4      3
D2V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           23             11
  CLUS_2           11              5
  CLUS_3            5              6
  CLUS_4            7              4
  CLUS_5           10              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED        7     13     12      4      4     12      4
  TP53 WILD-TYPE      5      4      9      5      2      2      2
D2V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            7              5
  CLUS_2           13              4
  CLUS_3           12              9
  CLUS_4            4              5
  CLUS_5            4              2
  CLUS_6           12              2
  CLUS_7            4              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       49     30     21
  TP53 WILD-TYPE     22     13     11
D2V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           49             22
  CLUS_2           30             13
  CLUS_3           21             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       45     44     11
  TP53 WILD-TYPE     22     19      5
D2V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           45             22
  CLUS_2           44             19
  CLUS_3           11              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       44     23     18     15
  TP53 WILD-TYPE     18     13     10      5
D2V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           44             18
  CLUS_2           23             13
  CLUS_3           18             10
  CLUS_4           15              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       64     21     15
  TP53 WILD-TYPE     25     14      7
D2V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           64             25
  CLUS_2           21             14
  CLUS_3           15              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       44     35     19
  TP53 WILD-TYPE     18     16     12
D2V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           44             18
  CLUS_2           35             16
  CLUS_3           19             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       53     30     15
  TP53 WILD-TYPE     22     15      9
D2V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           53             22
  CLUS_2           30             15
  CLUS_3           15              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = JMY MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JMY MUTATED       20     28      7
  JMY WILD-TYPE     46     37      7
D3V1, multiclass
        clus
vv       JMY MUTATED JMY WILD-TYPE
  CLUS_1          20            46
  CLUS_2          28            37
  CLUS_3           7             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMY MUTATED       16      8     17     14
  JMY WILD-TYPE     22     21     28     20
D3V2, multiclass
        clus
vv       JMY MUTATED JMY WILD-TYPE
  CLUS_1          16            22
  CLUS_2           8            21
  CLUS_3          17            28
  CLUS_4          14            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JMY MUTATED       11      7      4      2      7
  JMY WILD-TYPE     23      9      7      9      6
D3V3, multiclass
        clus
vv       JMY MUTATED JMY WILD-TYPE
  CLUS_1          11            23
  CLUS_2           7             9
  CLUS_3           4             7
  CLUS_4           2             9
  CLUS_5           7             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  JMY MUTATED        4      8      5      2      3      6      3
  JMY WILD-TYPE      8      9     16      7      3      8      3
D3V4, multiclass
        clus
vv       JMY MUTATED JMY WILD-TYPE
  CLUS_1           4             8
  CLUS_2           8             9
  CLUS_3           5            16
  CLUS_4           2             7
  CLUS_5           3             3
  CLUS_6           6             8
  CLUS_7           3             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JMY MUTATED       30     15     10
  JMY WILD-TYPE     41     28     22
D3V5, multiclass
        clus
vv       JMY MUTATED JMY WILD-TYPE
  CLUS_1          30            41
  CLUS_2          15            28
  CLUS_3          10            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JMY MUTATED       26     24      5
  JMY WILD-TYPE     41     39     11
D3V6, multiclass
        clus
vv       JMY MUTATED JMY WILD-TYPE
  CLUS_1          26            41
  CLUS_2          24            39
  CLUS_3           5            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMY MUTATED       26     15     10      4
  JMY WILD-TYPE     36     21     18     16
D3V7, multiclass
        clus
vv       JMY MUTATED JMY WILD-TYPE
  CLUS_1          26            36
  CLUS_2          15            21
  CLUS_3          10            18
  CLUS_4           4            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JMY MUTATED       38     10      7
  JMY WILD-TYPE     51     25     15
D3V8, multiclass
        clus
vv       JMY MUTATED JMY WILD-TYPE
  CLUS_1          38            51
  CLUS_2          10            25
  CLUS_3           7            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JMY MUTATED       27     16     12
  JMY WILD-TYPE     35     35     19
D3V9, multiclass
        clus
vv       JMY MUTATED JMY WILD-TYPE
  CLUS_1          27            35
  CLUS_2          16            35
  CLUS_3          12            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JMY MUTATED       32     18      5
  JMY WILD-TYPE     43     27     19
D3V10, multiclass
        clus
vv       JMY MUTATED JMY WILD-TYPE
  CLUS_1          32            43
  CLUS_2          18            27
  CLUS_3           5            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = RIOK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIOK1 MUTATED       27     20      8
  RIOK1 WILD-TYPE     39     45      6
D4V1, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1            27              39
  CLUS_2            20              45
  CLUS_3             8               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIOK1 MUTATED       11     17     16     11
  RIOK1 WILD-TYPE     27     12     29     23
D4V2, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1            11              27
  CLUS_2            17              12
  CLUS_3            16              29
  CLUS_4            11              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIOK1 MUTATED        9      9      6      5      5
  RIOK1 WILD-TYPE     25      7      5      6      8
D4V3, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             9              25
  CLUS_2             9               7
  CLUS_3             6               5
  CLUS_4             5               6
  CLUS_5             5               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RIOK1 MUTATED        3     10      7      4      4      5      1
  RIOK1 WILD-TYPE      9      7     14      5      2      9      5
D4V4, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             3               9
  CLUS_2            10               7
  CLUS_3             7              14
  CLUS_4             4               5
  CLUS_5             4               2
  CLUS_6             5               9
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIOK1 MUTATED       21     21     13
  RIOK1 WILD-TYPE     50     22     19
D4V5, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1            21              50
  CLUS_2            21              22
  CLUS_3            13              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIOK1 MUTATED       29     20      6
  RIOK1 WILD-TYPE     38     43     10
D4V6, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1            29              38
  CLUS_2            20              43
  CLUS_3             6              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIOK1 MUTATED       20     17      9      9
  RIOK1 WILD-TYPE     42     19     19     11
D4V7, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1            20              42
  CLUS_2            17              19
  CLUS_3             9              19
  CLUS_4             9              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIOK1 MUTATED       29     17      9
  RIOK1 WILD-TYPE     60     18     13
D4V8, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1            29              60
  CLUS_2            17              18
  CLUS_3             9              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIOK1 MUTATED       23     23      8
  RIOK1 WILD-TYPE     39     28     23
D4V9, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1            23              39
  CLUS_2            23              28
  CLUS_3             8              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIOK1 MUTATED       24     21      9
  RIOK1 WILD-TYPE     51     24     15
D4V10, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1            24              51
  CLUS_2            21              24
  CLUS_3             9              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = LCE2A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LCE2A MUTATED       21     21      3
  LCE2A WILD-TYPE     45     44     11
D5V1, multiclass
        clus
vv       LCE2A MUTATED LCE2A WILD-TYPE
  CLUS_1            21              45
  CLUS_2            21              44
  CLUS_3             3              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCE2A MUTATED       11     11     15      9
  LCE2A WILD-TYPE     27     18     30     25
D5V2, multiclass
        clus
vv       LCE2A MUTATED LCE2A WILD-TYPE
  CLUS_1            11              27
  CLUS_2            11              18
  CLUS_3            15              30
  CLUS_4             9              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LCE2A MUTATED       13      5      2      3      1
  LCE2A WILD-TYPE     21     11      9      8     12
D5V3, multiclass
        clus
vv       LCE2A MUTATED LCE2A WILD-TYPE
  CLUS_1            13              21
  CLUS_2             5              11
  CLUS_3             2               9
  CLUS_4             3               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LCE2A MUTATED        3      5      9      2      0      2      3
  LCE2A WILD-TYPE      9     12     12      7      6     12      3
D5V4, multiclass
        clus
vv       LCE2A MUTATED LCE2A WILD-TYPE
  CLUS_1             3               9
  CLUS_2             5              12
  CLUS_3             9              12
  CLUS_4             2               7
  CLUS_5             0               6
  CLUS_6             2              12
  CLUS_7             3               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LCE2A MUTATED       24     14      8
  LCE2A WILD-TYPE     47     29     24
D5V5, multiclass
        clus
vv       LCE2A MUTATED LCE2A WILD-TYPE
  CLUS_1            24              47
  CLUS_2            14              29
  CLUS_3             8              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LCE2A MUTATED       23     20      3
  LCE2A WILD-TYPE     44     43     13
D5V6, multiclass
        clus
vv       LCE2A MUTATED LCE2A WILD-TYPE
  CLUS_1            23              44
  CLUS_2            20              43
  CLUS_3             3              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCE2A MUTATED       22     12      7      5
  LCE2A WILD-TYPE     40     24     21     15
D5V7, multiclass
        clus
vv       LCE2A MUTATED LCE2A WILD-TYPE
  CLUS_1            22              40
  CLUS_2            12              24
  CLUS_3             7              21
  CLUS_4             5              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LCE2A MUTATED       29     14      3
  LCE2A WILD-TYPE     60     21     19
D5V8, multiclass
        clus
vv       LCE2A MUTATED LCE2A WILD-TYPE
  CLUS_1            29              60
  CLUS_2            14              21
  CLUS_3             3              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LCE2A MUTATED       21     15      9
  LCE2A WILD-TYPE     41     36     22
D5V9, multiclass
        clus
vv       LCE2A MUTATED LCE2A WILD-TYPE
  CLUS_1            21              41
  CLUS_2            15              36
  CLUS_3             9              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LCE2A MUTATED       26     15      4
  LCE2A WILD-TYPE     49     30     20
D5V10, multiclass
        clus
vv       LCE2A MUTATED LCE2A WILD-TYPE
  CLUS_1            26              49
  CLUS_2            15              30
  CLUS_3             4              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = C1QB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1QB MUTATED       16     13      5
  C1QB WILD-TYPE     50     52      9
D6V1, multiclass
        clus
vv       C1QB MUTATED C1QB WILD-TYPE
  CLUS_1           16             50
  CLUS_2           13             52
  CLUS_3            5              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QB MUTATED       12      7     10      6
  C1QB WILD-TYPE     26     22     35     28
D6V2, multiclass
        clus
vv       C1QB MUTATED C1QB WILD-TYPE
  CLUS_1           12             26
  CLUS_2            7             22
  CLUS_3           10             35
  CLUS_4            6             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QB MUTATED        4      2      2      4      4
  C1QB WILD-TYPE     30     14      9      7      9
D6V3, multiclass
        clus
vv       C1QB MUTATED C1QB WILD-TYPE
  CLUS_1            4             30
  CLUS_2            2             14
  CLUS_3            2              9
  CLUS_4            4              7
  CLUS_5            4              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1QB MUTATED        1      3      3      0      2      5      2
  C1QB WILD-TYPE     11     14     18      9      4      9      4
D6V4, multiclass
        clus
vv       C1QB MUTATED C1QB WILD-TYPE
  CLUS_1            1             11
  CLUS_2            3             14
  CLUS_3            3             18
  CLUS_4            0              9
  CLUS_5            2              4
  CLUS_6            5              9
  CLUS_7            2              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1QB MUTATED       15     13      7
  C1QB WILD-TYPE     56     30     25
D6V5, multiclass
        clus
vv       C1QB MUTATED C1QB WILD-TYPE
  CLUS_1           15             56
  CLUS_2           13             30
  CLUS_3            7             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1QB MUTATED       18     14      3
  C1QB WILD-TYPE     49     49     13
D6V6, multiclass
        clus
vv       C1QB MUTATED C1QB WILD-TYPE
  CLUS_1           18             49
  CLUS_2           14             49
  CLUS_3            3             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QB MUTATED       13      9      6      7
  C1QB WILD-TYPE     49     27     22     13
D6V7, multiclass
        clus
vv       C1QB MUTATED C1QB WILD-TYPE
  CLUS_1           13             49
  CLUS_2            9             27
  CLUS_3            6             22
  CLUS_4            7             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1QB MUTATED       21      9      5
  C1QB WILD-TYPE     68     26     17
D6V8, multiclass
        clus
vv       C1QB MUTATED C1QB WILD-TYPE
  CLUS_1           21             68
  CLUS_2            9             26
  CLUS_3            5             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1QB MUTATED       16     11      7
  C1QB WILD-TYPE     46     40     24
D6V9, multiclass
        clus
vv       C1QB MUTATED C1QB WILD-TYPE
  CLUS_1           16             46
  CLUS_2           11             40
  CLUS_3            7             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1QB MUTATED       20     11      3
  C1QB WILD-TYPE     55     34     21
D6V10, multiclass
        clus
vv       C1QB MUTATED C1QB WILD-TYPE
  CLUS_1           20             55
  CLUS_2           11             34
  CLUS_3            3             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = CDKN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       10     15      5
  CDKN2A WILD-TYPE     56     50      9
D7V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             10               56
  CLUS_2             15               50
  CLUS_3              5                9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       12      7      9      2
  CDKN2A WILD-TYPE     26     22     36     32
D7V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             12               26
  CLUS_2              7               22
  CLUS_3              9               36
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        5      2      2      4      3
  CDKN2A WILD-TYPE     29     14      9      7     10
D7V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              5               29
  CLUS_2              2               14
  CLUS_3              2                9
  CLUS_4              4                7
  CLUS_5              3               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDKN2A MUTATED        0      2      3      2      3      4      2
  CDKN2A WILD-TYPE     12     15     18      7      3     10      4
D7V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              0               12
  CLUS_2              2               15
  CLUS_3              3               18
  CLUS_4              2                7
  CLUS_5              3                3
  CLUS_6              4               10
  CLUS_7              2                4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       17     11      2
  CDKN2A WILD-TYPE     54     32     30
D7V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             17               54
  CLUS_2             11               32
  CLUS_3              2               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       17     11      2
  CDKN2A WILD-TYPE     50     52     14
D7V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             17               50
  CLUS_2             11               52
  CLUS_3              2               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       14      9      5      2
  CDKN2A WILD-TYPE     48     27     23     18
D7V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             14               48
  CLUS_2              9               27
  CLUS_3              5               23
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       18     10      2
  CDKN2A WILD-TYPE     71     25     20
D7V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             18               71
  CLUS_2             10               25
  CLUS_3              2               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       15      9      5
  CDKN2A WILD-TYPE     47     42     26
D7V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             15               47
  CLUS_2              9               42
  CLUS_3              5               26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       12     14      3
  CDKN2A WILD-TYPE     63     31     21
D7V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             12               63
  CLUS_2             14               31
  CLUS_3              3               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AEBP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AEBP1 MUTATED       12     10      4
  AEBP1 WILD-TYPE     54     55     10
D8V1, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1            12              54
  CLUS_2            10              55
  CLUS_3             4              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AEBP1 MUTATED        6      7      7      6
  AEBP1 WILD-TYPE     32     22     38     28
D8V2, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             6              32
  CLUS_2             7              22
  CLUS_3             7              38
  CLUS_4             6              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AEBP1 MUTATED        6      2      6      2      3
  AEBP1 WILD-TYPE     28     14      5      9     10
D8V3, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             6              28
  CLUS_2             2              14
  CLUS_3             6               5
  CLUS_4             2               9
  CLUS_5             3              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AEBP1 MUTATED        4      3      2      4      2      3      1
  AEBP1 WILD-TYPE      8     14     19      5      4     11      5
D8V4, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             4               8
  CLUS_2             3              14
  CLUS_3             2              19
  CLUS_4             4               5
  CLUS_5             2               4
  CLUS_6             3              11
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AEBP1 MUTATED        9     10      7
  AEBP1 WILD-TYPE     62     33     25
D8V5, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             9              62
  CLUS_2            10              33
  CLUS_3             7              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AEBP1 MUTATED       13      9      4
  AEBP1 WILD-TYPE     54     54     12
D8V6, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1            13              54
  CLUS_2             9              54
  CLUS_3             4              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AEBP1 MUTATED        5      9      8      4
  AEBP1 WILD-TYPE     57     27     20     16
D8V7, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             9              27
  CLUS_3             8              20
  CLUS_4             4              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AEBP1 MUTATED       13      7      6
  AEBP1 WILD-TYPE     76     28     16
D8V8, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1            13              76
  CLUS_2             7              28
  CLUS_3             6              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AEBP1 MUTATED        8     12      6
  AEBP1 WILD-TYPE     54     39     25
D8V9, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             8              54
  CLUS_2            12              39
  CLUS_3             6              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AEBP1 MUTATED       11     10      5
  AEBP1 WILD-TYPE     64     35     19
D8V10, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1            11              64
  CLUS_2            10              35
  CLUS_3             5              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = RBM47 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM47 MUTATED       14     10      0
  RBM47 WILD-TYPE     52     55     14
D9V1, multiclass
        clus
vv       RBM47 MUTATED RBM47 WILD-TYPE
  CLUS_1            14              52
  CLUS_2            10              55
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM47 MUTATED        5      6      7      7
  RBM47 WILD-TYPE     33     23     38     27
D9V2, multiclass
        clus
vv       RBM47 MUTATED RBM47 WILD-TYPE
  CLUS_1             5              33
  CLUS_2             6              23
  CLUS_3             7              38
  CLUS_4             7              27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM47 MUTATED        5      3      2      3      0
  RBM47 WILD-TYPE     29     13      9      8     13
D9V3, multiclass
        clus
vv       RBM47 MUTATED RBM47 WILD-TYPE
  CLUS_1             5              29
  CLUS_2             3              13
  CLUS_3             2               9
  CLUS_4             3               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM47 MUTATED        3      3      3      1      1      1      1
  RBM47 WILD-TYPE      9     14     18      8      5     13      5
D9V4, multiclass
        clus
vv       RBM47 MUTATED RBM47 WILD-TYPE
  CLUS_1             3               9
  CLUS_2             3              14
  CLUS_3             3              18
  CLUS_4             1               8
  CLUS_5             1               5
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM47 MUTATED       11      7      7
  RBM47 WILD-TYPE     60     36     25
D9V5, multiclass
        clus
vv       RBM47 MUTATED RBM47 WILD-TYPE
  CLUS_1            11              60
  CLUS_2             7              36
  CLUS_3             7              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM47 MUTATED       12     10      3
  RBM47 WILD-TYPE     55     53     13
D9V6, multiclass
        clus
vv       RBM47 MUTATED RBM47 WILD-TYPE
  CLUS_1            12              55
  CLUS_2            10              53
  CLUS_3             3              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM47 MUTATED       10      7      3      5
  RBM47 WILD-TYPE     52     29     25     15
D9V7, multiclass
        clus
vv       RBM47 MUTATED RBM47 WILD-TYPE
  CLUS_1            10              52
  CLUS_2             7              29
  CLUS_3             3              25
  CLUS_4             5              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM47 MUTATED       15      6      4
  RBM47 WILD-TYPE     74     29     18
D9V8, multiclass
        clus
vv       RBM47 MUTATED RBM47 WILD-TYPE
  CLUS_1            15              74
  CLUS_2             6              29
  CLUS_3             4              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM47 MUTATED       13      8      4
  RBM47 WILD-TYPE     49     43     27
D9V9, multiclass
        clus
vv       RBM47 MUTATED RBM47 WILD-TYPE
  CLUS_1            13              49
  CLUS_2             8              43
  CLUS_3             4              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM47 MUTATED       12      9      4
  RBM47 WILD-TYPE     63     36     20
D9V10, multiclass
        clus
vv       RBM47 MUTATED RBM47 WILD-TYPE
  CLUS_1            12              63
  CLUS_2             9              36
  CLUS_3             4              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = ANKRD36 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED       13     10      1
  ANKRD36 WILD-TYPE     53     55     13
D10V1, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1              13                53
  CLUS_2              10                55
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED        6      6      7      5
  ANKRD36 WILD-TYPE     32     23     38     29
D10V2, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               6                32
  CLUS_2               6                23
  CLUS_3               7                38
  CLUS_4               5                29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD36 MUTATED       10      4      2      0      1
  ANKRD36 WILD-TYPE     24     12      9     11     12
D10V3, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1              10                24
  CLUS_2               4                12
  CLUS_3               2                 9
  CLUS_4               0                11
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD36 MUTATED        4      4      6      2      0      0      1
  ANKRD36 WILD-TYPE      8     13     15      7      6     14      5
D10V4, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               4                 8
  CLUS_2               4                13
  CLUS_3               6                15
  CLUS_4               2                 7
  CLUS_5               0                 6
  CLUS_6               0                14
  CLUS_7               1                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED        8      8      8
  ANKRD36 WILD-TYPE     63     35     24
D10V5, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               8                63
  CLUS_2               8                35
  CLUS_3               8                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED       11      8      5
  ANKRD36 WILD-TYPE     56     55     11
D10V6, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1              11                56
  CLUS_2               8                55
  CLUS_3               5                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED       11      4      4      5
  ANKRD36 WILD-TYPE     51     32     24     15
D10V7, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1              11                51
  CLUS_2               4                32
  CLUS_3               4                24
  CLUS_4               5                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED       12      6      6
  ANKRD36 WILD-TYPE     77     29     16
D10V8, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1              12                77
  CLUS_2               6                29
  CLUS_3               6                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED        8      9      6
  ANKRD36 WILD-TYPE     54     42     25
D10V9, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               8                54
  CLUS_2               9                42
  CLUS_3               6                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED       10      8      5
  ANKRD36 WILD-TYPE     65     37     19
D10V10, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1              10                65
  CLUS_2               8                37
  CLUS_3               5                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = RFX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFX1 MUTATED       10     13      1
  RFX1 WILD-TYPE     56     52     13
D11V1, multiclass
        clus
vv       RFX1 MUTATED RFX1 WILD-TYPE
  CLUS_1           10             56
  CLUS_2           13             52
  CLUS_3            1             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFX1 MUTATED        7      7      3      7
  RFX1 WILD-TYPE     31     22     42     27
D11V2, multiclass
        clus
vv       RFX1 MUTATED RFX1 WILD-TYPE
  CLUS_1            7             31
  CLUS_2            7             22
  CLUS_3            3             42
  CLUS_4            7             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RFX1 MUTATED        2      4      2      2      3
  RFX1 WILD-TYPE     32     12      9      9     10
D11V3, multiclass
        clus
vv       RFX1 MUTATED RFX1 WILD-TYPE
  CLUS_1            2             32
  CLUS_2            4             12
  CLUS_3            2              9
  CLUS_4            2              9
  CLUS_5            3             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RFX1 MUTATED        1      5      2      1      0      3      1
  RFX1 WILD-TYPE     11     12     19      8      6     11      5
D11V4, multiclass
        clus
vv       RFX1 MUTATED RFX1 WILD-TYPE
  CLUS_1            1             11
  CLUS_2            5             12
  CLUS_3            2             19
  CLUS_4            1              8
  CLUS_5            0              6
  CLUS_6            3             11
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFX1 MUTATED       13      9      2
  RFX1 WILD-TYPE     58     34     30
D11V5, multiclass
        clus
vv       RFX1 MUTATED RFX1 WILD-TYPE
  CLUS_1           13             58
  CLUS_2            9             34
  CLUS_3            2             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFX1 MUTATED       13     10      1
  RFX1 WILD-TYPE     54     53     15
D11V6, multiclass
        clus
vv       RFX1 MUTATED RFX1 WILD-TYPE
  CLUS_1           13             54
  CLUS_2           10             53
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFX1 MUTATED       11      8      3      2
  RFX1 WILD-TYPE     51     28     25     18
D11V7, multiclass
        clus
vv       RFX1 MUTATED RFX1 WILD-TYPE
  CLUS_1           11             51
  CLUS_2            8             28
  CLUS_3            3             25
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFX1 MUTATED       15      8      1
  RFX1 WILD-TYPE     74     27     21
D11V8, multiclass
        clus
vv       RFX1 MUTATED RFX1 WILD-TYPE
  CLUS_1           15             74
  CLUS_2            8             27
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFX1 MUTATED       15      7      2
  RFX1 WILD-TYPE     47     44     29
D11V9, multiclass
        clus
vv       RFX1 MUTATED RFX1 WILD-TYPE
  CLUS_1           15             47
  CLUS_2            7             44
  CLUS_3            2             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFX1 MUTATED       11     11      2
  RFX1 WILD-TYPE     64     34     22
D11V10, multiclass
        clus
vv       RFX1 MUTATED RFX1 WILD-TYPE
  CLUS_1           11             64
  CLUS_2           11             34
  CLUS_3            2             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = TYRO3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRO3 MUTATED        4      8      1
  TYRO3 WILD-TYPE     62     57     13
D12V1, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             4              62
  CLUS_2             8              57
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYRO3 MUTATED        3      5      4      2
  TYRO3 WILD-TYPE     35     24     41     32
D12V2, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             5              24
  CLUS_3             4              41
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TYRO3 MUTATED        4      2      1      1      0
  TYRO3 WILD-TYPE     30     14     10     10     13
D12V3, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             2              14
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TYRO3 MUTATED        0      2      2      1      0      2      1
  TYRO3 WILD-TYPE     12     15     19      8      6     12      5
D12V4, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             2              15
  CLUS_3             2              19
  CLUS_4             1               8
  CLUS_5             0               6
  CLUS_6             2              12
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRO3 MUTATED        5      8      1
  TYRO3 WILD-TYPE     66     35     31
D12V5, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             8              35
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRO3 MUTATED        8      5      1
  TYRO3 WILD-TYPE     59     58     15
D12V6, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             8              59
  CLUS_2             5              58
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYRO3 MUTATED        5      6      2      1
  TYRO3 WILD-TYPE     57     30     26     19
D12V7, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             6              30
  CLUS_3             2              26
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRO3 MUTATED        9      5      0
  TYRO3 WILD-TYPE     80     30     22
D12V8, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             9              80
  CLUS_2             5              30
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRO3 MUTATED        5      5      4
  TYRO3 WILD-TYPE     57     46     27
D12V9, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             5              46
  CLUS_3             4              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRO3 MUTATED        9      5      0
  TYRO3 WILD-TYPE     66     40     24
D12V10, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             9              66
  CLUS_2             5              40
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = SMAD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       17     15      0
  SMAD4 WILD-TYPE     49     50     14
D13V1, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            17              49
  CLUS_2            15              50
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED       10      4     12      6
  SMAD4 WILD-TYPE     28     25     33     28
D13V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            10              28
  CLUS_2             4              25
  CLUS_3            12              33
  CLUS_4             6              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        9      3      5      2      0
  SMAD4 WILD-TYPE     25     13      6      9     13
D13V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             9              25
  CLUS_2             3              13
  CLUS_3             5               6
  CLUS_4             2               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMAD4 MUTATED        5      3      5      4      0      1      1
  SMAD4 WILD-TYPE      7     14     16      5      6     13      5
D13V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5               7
  CLUS_2             3              14
  CLUS_3             5              16
  CLUS_4             4               5
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       17     12      3
  SMAD4 WILD-TYPE     54     31     29
D13V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            17              54
  CLUS_2            12              31
  CLUS_3             3              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       17     15      0
  SMAD4 WILD-TYPE     50     48     16
D13V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            17              50
  CLUS_2            15              48
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED       15     10      5      2
  SMAD4 WILD-TYPE     47     26     23     18
D13V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            15              47
  CLUS_2            10              26
  CLUS_3             5              23
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       21      9      2
  SMAD4 WILD-TYPE     68     26     20
D13V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            21              68
  CLUS_2             9              26
  CLUS_3             2              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       16      8      8
  SMAD4 WILD-TYPE     46     43     23
D13V9, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            16              46
  CLUS_2             8              43
  CLUS_3             8              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       18     12      2
  SMAD4 WILD-TYPE     57     33     22
D13V10, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            18              57
  CLUS_2            12              33
  CLUS_3             2              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = GPR6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPR6 MUTATED        8      4      0
  GPR6 WILD-TYPE     58     61     14
D14V1, multiclass
        clus
vv       GPR6 MUTATED GPR6 WILD-TYPE
  CLUS_1            8             58
  CLUS_2            4             61
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR6 MUTATED        3      3      2      4
  GPR6 WILD-TYPE     35     26     43     30
D14V2, multiclass
        clus
vv       GPR6 MUTATED GPR6 WILD-TYPE
  CLUS_1            3             35
  CLUS_2            3             26
  CLUS_3            2             43
  CLUS_4            4             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR6 MUTATED        5      0      1      1      0
  GPR6 WILD-TYPE     29     16     10     10     13
D14V3, multiclass
        clus
vv       GPR6 MUTATED GPR6 WILD-TYPE
  CLUS_1            5             29
  CLUS_2            0             16
  CLUS_3            1             10
  CLUS_4            1             10
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR6 MUTATED        2      0      2      0      0      0      3
  GPR6 WILD-TYPE     10     17     19      9      6     14      3
D14V4, multiclass
        clus
vv       GPR6 MUTATED GPR6 WILD-TYPE
  CLUS_1            2             10
  CLUS_2            0             17
  CLUS_3            2             19
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            0             14
  CLUS_7            3              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPR6 MUTATED        5      6      1
  GPR6 WILD-TYPE     66     37     31
D14V5, multiclass
        clus
vv       GPR6 MUTATED GPR6 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            6             37
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPR6 MUTATED        7      4      1
  GPR6 WILD-TYPE     60     59     15
D14V6, multiclass
        clus
vv       GPR6 MUTATED GPR6 WILD-TYPE
  CLUS_1            7             60
  CLUS_2            4             59
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR6 MUTATED        4      5      2      1
  GPR6 WILD-TYPE     58     31     26     19
D14V7, multiclass
        clus
vv       GPR6 MUTATED GPR6 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            5             31
  CLUS_3            2             26
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPR6 MUTATED        7      4      1
  GPR6 WILD-TYPE     82     31     21
D14V8, multiclass
        clus
vv       GPR6 MUTATED GPR6 WILD-TYPE
  CLUS_1            7             82
  CLUS_2            4             31
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPR6 MUTATED        5      5      2
  GPR6 WILD-TYPE     57     46     29
D14V9, multiclass
        clus
vv       GPR6 MUTATED GPR6 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            5             46
  CLUS_3            2             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPR6 MUTATED        5      5      2
  GPR6 WILD-TYPE     70     40     22
D14V10, multiclass
        clus
vv       GPR6 MUTATED GPR6 WILD-TYPE
  CLUS_1            5             70
  CLUS_2            5             40
  CLUS_3            2             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = LZTS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LZTS1 MUTATED        5      5      0
  LZTS1 WILD-TYPE     61     60     14
D15V1, multiclass
        clus
vv       LZTS1 MUTATED LZTS1 WILD-TYPE
  CLUS_1             5              61
  CLUS_2             5              60
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LZTS1 MUTATED        4      2      2      2
  LZTS1 WILD-TYPE     34     27     43     32
D15V2, multiclass
        clus
vv       LZTS1 MUTATED LZTS1 WILD-TYPE
  CLUS_1             4              34
  CLUS_2             2              27
  CLUS_3             2              43
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LZTS1 MUTATED        1      0      1      0      1
  LZTS1 WILD-TYPE     33     16     10     11     12
D15V3, multiclass
        clus
vv       LZTS1 MUTATED LZTS1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LZTS1 MUTATED        0      0      0      0      1      0      2
  LZTS1 WILD-TYPE     12     17     21      9      5     14      4
D15V4, multiclass
        clus
vv       LZTS1 MUTATED LZTS1 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             1               5
  CLUS_6             0              14
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LZTS1 MUTATED        4      3      3
  LZTS1 WILD-TYPE     67     40     29
D15V5, multiclass
        clus
vv       LZTS1 MUTATED LZTS1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             3              40
  CLUS_3             3              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LZTS1 MUTATED        5      3      2
  LZTS1 WILD-TYPE     62     60     14
D15V6, multiclass
        clus
vv       LZTS1 MUTATED LZTS1 WILD-TYPE
  CLUS_1             5              62
  CLUS_2             3              60
  CLUS_3             2              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LZTS1 MUTATED        2      3      3      2
  LZTS1 WILD-TYPE     60     33     25     18
D15V7, multiclass
        clus
vv       LZTS1 MUTATED LZTS1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             3              33
  CLUS_3             3              25
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LZTS1 MUTATED        6      2      2
  LZTS1 WILD-TYPE     83     33     20
D15V8, multiclass
        clus
vv       LZTS1 MUTATED LZTS1 WILD-TYPE
  CLUS_1             6              83
  CLUS_2             2              33
  CLUS_3             2              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LZTS1 MUTATED        3      7      0
  LZTS1 WILD-TYPE     59     44     31
D15V9, multiclass
        clus
vv       LZTS1 MUTATED LZTS1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             7              44
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LZTS1 MUTATED        4      4      2
  LZTS1 WILD-TYPE     71     41     22
D15V10, multiclass
        clus
vv       LZTS1 MUTATED LZTS1 WILD-TYPE
  CLUS_1             4              71
  CLUS_2             4              41
  CLUS_3             2              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = NCOA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA3 MUTATED        6      6      2
  NCOA3 WILD-TYPE     60     59     12
D16V1, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             6              60
  CLUS_2             6              59
  CLUS_3             2              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA3 MUTATED        5      4      4      1
  NCOA3 WILD-TYPE     33     25     41     33
D16V2, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             5              33
  CLUS_2             4              25
  CLUS_3             4              41
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOA3 MUTATED        5      2      1      0      0
  NCOA3 WILD-TYPE     29     14     10     11     13
D16V3, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             5              29
  CLUS_2             2              14
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCOA3 MUTATED        2      2      1      0      0      0      3
  NCOA3 WILD-TYPE     10     15     20      9      6     14      3
D16V4, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             2              10
  CLUS_2             2              15
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             3               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA3 MUTATED        6      7      1
  NCOA3 WILD-TYPE     65     36     31
D16V5, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             7              36
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA3 MUTATED        8      6      0
  NCOA3 WILD-TYPE     59     57     16
D16V6, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             8              59
  CLUS_2             6              57
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA3 MUTATED        6      5      2      1
  NCOA3 WILD-TYPE     56     31     26     19
D16V7, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             5              31
  CLUS_3             2              26
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA3 MUTATED        9      5      0
  NCOA3 WILD-TYPE     80     30     22
D16V8, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             9              80
  CLUS_2             5              30
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA3 MUTATED        6      4      4
  NCOA3 WILD-TYPE     56     47     27
D16V9, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             4              47
  CLUS_3             4              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA3 MUTATED        8      6      0
  NCOA3 WILD-TYPE     67     39     24
D16V10, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             8              67
  CLUS_2             6              39
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = SIK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIK3 MUTATED        8      3      1
  SIK3 WILD-TYPE     58     62     13
D17V1, multiclass
        clus
vv       SIK3 MUTATED SIK3 WILD-TYPE
  CLUS_1            8             58
  CLUS_2            3             62
  CLUS_3            1             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIK3 MUTATED        3      5      2      3
  SIK3 WILD-TYPE     35     24     43     31
D17V2, multiclass
        clus
vv       SIK3 MUTATED SIK3 WILD-TYPE
  CLUS_1            3             35
  CLUS_2            5             24
  CLUS_3            2             43
  CLUS_4            3             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIK3 MUTATED        4      1      1      3      1
  SIK3 WILD-TYPE     30     15     10      8     12
D17V3, multiclass
        clus
vv       SIK3 MUTATED SIK3 WILD-TYPE
  CLUS_1            4             30
  CLUS_2            1             15
  CLUS_3            1             10
  CLUS_4            3              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SIK3 MUTATED        1      1      3      1      1      2      1
  SIK3 WILD-TYPE     11     16     18      8      5     12      5
D17V4, multiclass
        clus
vv       SIK3 MUTATED SIK3 WILD-TYPE
  CLUS_1            1             11
  CLUS_2            1             16
  CLUS_3            3             18
  CLUS_4            1              8
  CLUS_5            1              5
  CLUS_6            2             12
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIK3 MUTATED        3      7      3
  SIK3 WILD-TYPE     68     36     29
D17V5, multiclass
        clus
vv       SIK3 MUTATED SIK3 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            7             36
  CLUS_3            3             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIK3 MUTATED        9      3      1
  SIK3 WILD-TYPE     58     60     15
D17V6, multiclass
        clus
vv       SIK3 MUTATED SIK3 WILD-TYPE
  CLUS_1            9             58
  CLUS_2            3             60
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIK3 MUTATED        1      7      3      2
  SIK3 WILD-TYPE     61     29     25     18
D17V7, multiclass
        clus
vv       SIK3 MUTATED SIK3 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            7             29
  CLUS_3            3             25
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIK3 MUTATED        6      6      1
  SIK3 WILD-TYPE     83     29     21
D17V8, multiclass
        clus
vv       SIK3 MUTATED SIK3 WILD-TYPE
  CLUS_1            6             83
  CLUS_2            6             29
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIK3 MUTATED        3      7      3
  SIK3 WILD-TYPE     59     44     28
D17V9, multiclass
        clus
vv       SIK3 MUTATED SIK3 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            7             44
  CLUS_3            3             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIK3 MUTATED        4      7      2
  SIK3 WILD-TYPE     71     38     22
D17V10, multiclass
        clus
vv       SIK3 MUTATED SIK3 WILD-TYPE
  CLUS_1            4             71
  CLUS_2            7             38
  CLUS_3            2             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = ZMIZ2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ2 MUTATED        4      7      1
  ZMIZ2 WILD-TYPE     62     58     13
D18V1, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             4              62
  CLUS_2             7              58
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ2 MUTATED        5      1      4      2
  ZMIZ2 WILD-TYPE     33     28     41     32
D18V2, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             5              33
  CLUS_2             1              28
  CLUS_3             4              41
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ2 MUTATED        3      3      3      1      1
  ZMIZ2 WILD-TYPE     31     13      8     10     12
D18V3, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             3              13
  CLUS_3             3               8
  CLUS_4             1              10
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMIZ2 MUTATED        0      3      2      2      0      3      1
  ZMIZ2 WILD-TYPE     12     14     19      7      6     11      5
D18V4, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             3              14
  CLUS_3             2              19
  CLUS_4             2               7
  CLUS_5             0               6
  CLUS_6             3              11
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ2 MUTATED        7      4      1
  ZMIZ2 WILD-TYPE     64     39     31
D18V5, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             4              39
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ2 MUTATED        7      4      1
  ZMIZ2 WILD-TYPE     60     59     15
D18V6, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             7              60
  CLUS_2             4              59
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ2 MUTATED        7      3      1      1
  ZMIZ2 WILD-TYPE     55     33     27     19
D18V7, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             3              33
  CLUS_3             1              27
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ2 MUTATED        9      2      1
  ZMIZ2 WILD-TYPE     80     33     21
D18V8, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             9              80
  CLUS_2             2              33
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ2 MUTATED        7      2      3
  ZMIZ2 WILD-TYPE     55     49     28
D18V9, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             2              49
  CLUS_3             3              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ2 MUTATED        7      4      1
  ZMIZ2 WILD-TYPE     68     41     23
D18V10, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             7              68
  CLUS_2             4              41
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = IRS4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        9      6      1
  IRS4 WILD-TYPE     57     59     13
D19V1, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            9             57
  CLUS_2            6             59
  CLUS_3            1             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        4      6      2      4
  IRS4 WILD-TYPE     34     23     43     30
D19V2, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4             34
  CLUS_2            6             23
  CLUS_3            2             43
  CLUS_4            4             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        3      0      2      0      2
  IRS4 WILD-TYPE     31     16      9     11     11
D19V3, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             31
  CLUS_2            0             16
  CLUS_3            2              9
  CLUS_4            0             11
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRS4 MUTATED        2      1      0      1      0      1      2
  IRS4 WILD-TYPE     10     16     21      8      6     13      4
D19V4, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2             10
  CLUS_2            1             16
  CLUS_3            0             21
  CLUS_4            1              8
  CLUS_5            0              6
  CLUS_6            1             13
  CLUS_7            2              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        7      6      3
  IRS4 WILD-TYPE     64     37     29
D19V5, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            7             64
  CLUS_2            6             37
  CLUS_3            3             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        8      7      1
  IRS4 WILD-TYPE     59     56     15
D19V6, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            8             59
  CLUS_2            7             56
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        6      6      3      1
  IRS4 WILD-TYPE     56     30     25     19
D19V7, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            6             30
  CLUS_3            3             25
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        9      6      1
  IRS4 WILD-TYPE     80     29     21
D19V8, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            9             80
  CLUS_2            6             29
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        7      6      3
  IRS4 WILD-TYPE     55     45     28
D19V9, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            7             55
  CLUS_2            6             45
  CLUS_3            3             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        7      7      2
  IRS4 WILD-TYPE     68     38     22
D19V10, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            7             68
  CLUS_2            7             38
  CLUS_3            2             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = ESPN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ESPN MUTATED        4      2      0
  ESPN WILD-TYPE     62     63     14
D20V1, multiclass
        clus
vv       ESPN MUTATED ESPN WILD-TYPE
  CLUS_1            4             62
  CLUS_2            2             63
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESPN MUTATED        1      2      2      1
  ESPN WILD-TYPE     37     27     43     33
D20V2, multiclass
        clus
vv       ESPN MUTATED ESPN WILD-TYPE
  CLUS_1            1             37
  CLUS_2            2             27
  CLUS_3            2             43
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESPN MUTATED        1      0      0      1      0
  ESPN WILD-TYPE     33     16     11     10     13
D20V3, multiclass
[1] "Remove cluster labels:" "ESPN MUTATED"          
clus
  ESPN MUTATED ESPN WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879     TCGA-F2-A44G 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A545 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N     TCGA-HV-A5A6 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925     TCGA-HZ-8001 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YH-A8SY     TCGA-YY-A8LH 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ESPN MUTATED        0      0      2      0      0      0      0
  ESPN WILD-TYPE     12     17     19      9      6     14      6
D20V4, multiclass
[1] "Remove cluster labels:" "ESPN MUTATED"          
clus
  ESPN MUTATED ESPN WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879     TCGA-F2-A44G 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A545 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N     TCGA-HV-A5A6 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925     TCGA-HZ-8001 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YH-A8SY     TCGA-YY-A8LH 
"ESPN WILD-TYPE" "ESPN WILD-TYPE" "ESPN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ESPN MUTATED        2      2      2
  ESPN WILD-TYPE     69     41     30
D20V5, multiclass
        clus
vv       ESPN MUTATED ESPN WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             41
  CLUS_3            2             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ESPN MUTATED        2      4      0
  ESPN WILD-TYPE     65     59     16
D20V6, multiclass
        clus
vv       ESPN MUTATED ESPN WILD-TYPE
  CLUS_1            2             65
  CLUS_2            4             59
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESPN MUTATED        2      2      1      1
  ESPN WILD-TYPE     60     34     27     19
D20V7, multiclass
        clus
vv       ESPN MUTATED ESPN WILD-TYPE
  CLUS_1            2             60
  CLUS_2            2             34
  CLUS_3            1             27
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ESPN MUTATED        3      2      1
  ESPN WILD-TYPE     86     33     21
D20V8, multiclass
        clus
vv       ESPN MUTATED ESPN WILD-TYPE
  CLUS_1            3             86
  CLUS_2            2             33
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ESPN MUTATED        2      1      3
  ESPN WILD-TYPE     60     50     28
D20V9, multiclass
        clus
vv       ESPN MUTATED ESPN WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             50
  CLUS_3            3             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ESPN MUTATED        3      2      1
  ESPN WILD-TYPE     72     43     23
D20V10, multiclass
        clus
vv       ESPN MUTATED ESPN WILD-TYPE
  CLUS_1            3             72
  CLUS_2            2             43
  CLUS_3            1             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = ATP2C1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C1 MUTATED        6      2      0
  ATP2C1 WILD-TYPE     60     63     14
D21V1, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              6               60
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C1 MUTATED        3      2      2      1
  ATP2C1 WILD-TYPE     35     27     43     33
D21V2, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              3               35
  CLUS_2              2               27
  CLUS_3              2               43
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2C1 MUTATED        1      4      1      0      0
  ATP2C1 WILD-TYPE     33     12     10     11     13
D21V3, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              4               12
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP2C1 MUTATED        0      3      1      0      0      0      2
  ATP2C1 WILD-TYPE     12     14     20      9      6     14      4
D21V4, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              3               14
  CLUS_3              1               20
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              2                4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C1 MUTATED        5      3      0
  ATP2C1 WILD-TYPE     66     40     32
D21V5, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              3               40
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C1 MUTATED        4      4      0
  ATP2C1 WILD-TYPE     63     59     16
D21V6, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              4               63
  CLUS_2              4               59
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C1 MUTATED        3      2      2      1
  ATP2C1 WILD-TYPE     59     34     26     19
D21V7, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              2               34
  CLUS_3              2               26
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C1 MUTATED        6      2      0
  ATP2C1 WILD-TYPE     83     33     22
D21V8, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              6               83
  CLUS_2              2               33
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C1 MUTATED        4      4      0
  ATP2C1 WILD-TYPE     58     47     31
D21V9, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              4               47
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C1 MUTATED        4      4      0
  ATP2C1 WILD-TYPE     71     41     24
D21V10, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              4               71
  CLUS_2              4               41
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = FNDC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC1 MUTATED        8      5      1
  FNDC1 WILD-TYPE     58     60     13
D22V1, multiclass
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  CLUS_1             8              58
  CLUS_2             5              60
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC1 MUTATED        2      4      5      3
  FNDC1 WILD-TYPE     36     25     40     31
D22V2, multiclass
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             4              25
  CLUS_3             5              40
  CLUS_4             3              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FNDC1 MUTATED        4      1      2      2      0
  FNDC1 WILD-TYPE     30     15      9      9     13
D22V3, multiclass
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             1              15
  CLUS_3             2               9
  CLUS_4             2               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FNDC1 MUTATED        1      1      2      1      1      1      2
  FNDC1 WILD-TYPE     11     16     19      8      5     13      4
D22V4, multiclass
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  CLUS_1             1              11
  CLUS_2             1              16
  CLUS_3             2              19
  CLUS_4             1               8
  CLUS_5             1               5
  CLUS_6             1              13
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC1 MUTATED        5      4      5
  FNDC1 WILD-TYPE     66     39     27
D22V5, multiclass
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             4              39
  CLUS_3             5              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC1 MUTATED        7      6      1
  FNDC1 WILD-TYPE     60     57     15
D22V6, multiclass
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  CLUS_1             7              60
  CLUS_2             6              57
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC1 MUTATED        2      4      5      3
  FNDC1 WILD-TYPE     60     32     23     17
D22V7, multiclass
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             4              32
  CLUS_3             5              23
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC1 MUTATED        9      4      1
  FNDC1 WILD-TYPE     80     31     21
D22V8, multiclass
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  CLUS_1             9              80
  CLUS_2             4              31
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC1 MUTATED        3      7      4
  FNDC1 WILD-TYPE     59     44     27
D22V9, multiclass
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             7              44
  CLUS_3             4              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC1 MUTATED        7      4      3
  FNDC1 WILD-TYPE     68     41     21
D22V10, multiclass
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  CLUS_1             7              68
  CLUS_2             4              41
  CLUS_3             3              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = TMEM91 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM91 MUTATED        4      1      0
  TMEM91 WILD-TYPE     62     64     14
D23V1, multiclass
        clus
vv       TMEM91 MUTATED TMEM91 WILD-TYPE
  CLUS_1              4               62
  CLUS_2              1               64
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM91 MUTATED        1      1      2      2
  TMEM91 WILD-TYPE     37     28     43     32
D23V2, multiclass
        clus
vv       TMEM91 MUTATED TMEM91 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              1               28
  CLUS_3              2               43
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM91 MUTATED        1      0      2      1      0
  TMEM91 WILD-TYPE     33     16      9     10     13
D23V3, multiclass
        clus
vv       TMEM91 MUTATED TMEM91 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              0               16
  CLUS_3              2                9
  CLUS_4              1               10
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM91 MUTATED        0      0      2      1      0      0      1
  TMEM91 WILD-TYPE     12     17     19      8      6     14      5
D23V4, multiclass
        clus
vv       TMEM91 MUTATED TMEM91 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              0               17
  CLUS_3              2               19
  CLUS_4              1                8
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM91 MUTATED        2      3      1
  TMEM91 WILD-TYPE     69     40     31
D23V5, multiclass
        clus
vv       TMEM91 MUTATED TMEM91 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              3               40
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM91 MUTATED        4      1      1
  TMEM91 WILD-TYPE     63     62     15
D23V6, multiclass
        clus
vv       TMEM91 MUTATED TMEM91 WILD-TYPE
  CLUS_1              4               63
  CLUS_2              1               62
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM91 MUTATED        1      4      0      1
  TMEM91 WILD-TYPE     61     32     28     19
D23V7, multiclass
        clus
vv       TMEM91 MUTATED TMEM91 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              4               32
  CLUS_3              0               28
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM91 MUTATED        3      2      1
  TMEM91 WILD-TYPE     86     33     21
D23V8, multiclass
        clus
vv       TMEM91 MUTATED TMEM91 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              2               33
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM91 MUTATED        3      3      0
  TMEM91 WILD-TYPE     59     48     31
D23V9, multiclass
        clus
vv       TMEM91 MUTATED TMEM91 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              3               48
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM91 MUTATED        1      4      1
  TMEM91 WILD-TYPE     74     41     23
D23V10, multiclass
        clus
vv       TMEM91 MUTATED TMEM91 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              4               41
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = SHROOM4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED        7      4      0
  SHROOM4 WILD-TYPE     59     61     14
D24V1, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               7                59
  CLUS_2               4                61
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHROOM4 MUTATED        2      1      4      4
  SHROOM4 WILD-TYPE     36     28     41     30
D24V2, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               2                36
  CLUS_2               1                28
  CLUS_3               4                41
  CLUS_4               4                30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHROOM4 MUTATED        1      0      2      3      1
  SHROOM4 WILD-TYPE     33     16      9      8     12
D24V3, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               1                33
  CLUS_2               0                16
  CLUS_3               2                 9
  CLUS_4               3                 8
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SHROOM4 MUTATED        0      0      3      1      1      1      1
  SHROOM4 WILD-TYPE     12     17     18      8      5     13      5
D24V4, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               0                12
  CLUS_2               0                17
  CLUS_3               3                18
  CLUS_4               1                 8
  CLUS_5               1                 5
  CLUS_6               1                13
  CLUS_7               1                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED        4      2      5
  SHROOM4 WILD-TYPE     67     41     27
D24V5, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               2                41
  CLUS_3               5                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED        5      2      4
  SHROOM4 WILD-TYPE     62     61     12
D24V6, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               5                62
  CLUS_2               2                61
  CLUS_3               4                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHROOM4 MUTATED        2      4      2      3
  SHROOM4 WILD-TYPE     60     32     26     17
D24V7, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               4                32
  CLUS_3               2                26
  CLUS_4               3                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED        5      2      4
  SHROOM4 WILD-TYPE     84     33     18
D24V8, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               5                84
  CLUS_2               2                33
  CLUS_3               4                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED        5      6      0
  SHROOM4 WILD-TYPE     57     45     31
D24V9, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               5                57
  CLUS_2               6                45
  CLUS_3               0                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED        2      4      5
  SHROOM4 WILD-TYPE     73     41     19
D24V10, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               2                73
  CLUS_2               4                41
  CLUS_3               5                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = PABPC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        2      5      2
  PABPC1 WILD-TYPE     64     60     12
D25V1, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              5               60
  CLUS_3              2               12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC1 MUTATED        2      3      3      1
  PABPC1 WILD-TYPE     36     26     42     33
D25V2, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              3               26
  CLUS_3              3               42
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PABPC1 MUTATED        3      1      0      0      1
  PABPC1 WILD-TYPE     31     15     11     11     12
D25V3, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              3               31
  CLUS_2              1               15
  CLUS_3              0               11
  CLUS_4              0               11
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PABPC1 MUTATED        1      1      1      0      0      1      1
  PABPC1 WILD-TYPE     11     16     20      9      6     13      5
D25V4, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              1               11
  CLUS_2              1               16
  CLUS_3              1               20
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        3      5      1
  PABPC1 WILD-TYPE     68     38     31
D25V5, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              5               38
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        5      3      1
  PABPC1 WILD-TYPE     62     60     15
D25V6, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              5               62
  CLUS_2              3               60
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC1 MUTATED        5      2      1      1
  PABPC1 WILD-TYPE     57     34     27     19
D25V7, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              2               34
  CLUS_3              1               27
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        5      3      1
  PABPC1 WILD-TYPE     84     32     21
D25V8, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              3               32
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        3      2      4
  PABPC1 WILD-TYPE     59     49     27
D25V9, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              2               49
  CLUS_3              4               27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        4      5      0
  PABPC1 WILD-TYPE     71     40     24
D25V10, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              4               71
  CLUS_2              5               40
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = OGFOD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFOD1 MUTATED        3      2      0
  OGFOD1 WILD-TYPE     63     63     14
D26V1, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              3               63
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFOD1 MUTATED        0      1      2      2
  OGFOD1 WILD-TYPE     38     28     43     32
D26V2, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              0               38
  CLUS_2              1               28
  CLUS_3              2               43
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGFOD1 MUTATED        0      1      1      1      0
  OGFOD1 WILD-TYPE     34     15     10     10     13
D26V3, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              1               15
  CLUS_3              1               10
  CLUS_4              1               10
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OGFOD1 MUTATED        0      1      0      1      0      1      0
  OGFOD1 WILD-TYPE     12     16     21      8      6     13      6
D26V4, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              1               16
  CLUS_3              0               21
  CLUS_4              1                8
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              0                6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFOD1 MUTATED        2      0      3
  OGFOD1 WILD-TYPE     69     43     29
D26V5, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               43
  CLUS_3              3               29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFOD1 MUTATED        1      2      2
  OGFOD1 WILD-TYPE     66     61     14
D26V6, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              2               61
  CLUS_3              2               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFOD1 MUTATED        2      1      0      2
  OGFOD1 WILD-TYPE     60     35     28     18
D26V7, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               35
  CLUS_3              0               28
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFOD1 MUTATED        2      1      2
  OGFOD1 WILD-TYPE     87     34     20
D26V8, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              1               34
  CLUS_3              2               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFOD1 MUTATED        2      3      0
  OGFOD1 WILD-TYPE     60     48     31
D26V9, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              3               48
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFOD1 MUTATED        2      1      2
  OGFOD1 WILD-TYPE     73     44     22
D26V10, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              2               73
  CLUS_2              1               44
  CLUS_3              2               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DCP1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCP1B MUTATED        5      4      0
  DCP1B WILD-TYPE     61     61     14
D27V1, multiclass
        clus
vv       DCP1B MUTATED DCP1B WILD-TYPE
  CLUS_1             5              61
  CLUS_2             4              61
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCP1B MUTATED        3      4      1      1
  DCP1B WILD-TYPE     35     25     44     33
D27V2, multiclass
        clus
vv       DCP1B MUTATED DCP1B WILD-TYPE
  CLUS_1             3              35
  CLUS_2             4              25
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DCP1B MUTATED        2      0      3      0      0
  DCP1B WILD-TYPE     32     16      8     11     13
D27V3, multiclass
        clus
vv       DCP1B MUTATED DCP1B WILD-TYPE
  CLUS_1             2              32
  CLUS_2             0              16
  CLUS_3             3               8
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCP1B MUTATED        1      0      1      2      0      0      1
  DCP1B WILD-TYPE     11     17     20      7      6     14      5
D27V4, multiclass
        clus
vv       DCP1B MUTATED DCP1B WILD-TYPE
  CLUS_1             1              11
  CLUS_2             0              17
  CLUS_3             1              20
  CLUS_4             2               7
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCP1B MUTATED        2      4      3
  DCP1B WILD-TYPE     69     39     29
D27V5, multiclass
        clus
vv       DCP1B MUTATED DCP1B WILD-TYPE
  CLUS_1             2              69
  CLUS_2             4              39
  CLUS_3             3              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCP1B MUTATED        6      2      1
  DCP1B WILD-TYPE     61     61     15
D27V6, multiclass
        clus
vv       DCP1B MUTATED DCP1B WILD-TYPE
  CLUS_1             6              61
  CLUS_2             2              61
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCP1B MUTATED        2      6      0      1
  DCP1B WILD-TYPE     60     30     28     19
D27V7, multiclass
        clus
vv       DCP1B MUTATED DCP1B WILD-TYPE
  CLUS_1             2              60
  CLUS_2             6              30
  CLUS_3             0              28
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCP1B MUTATED        3      5      1
  DCP1B WILD-TYPE     86     30     21
D27V8, multiclass
        clus
vv       DCP1B MUTATED DCP1B WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5              30
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCP1B MUTATED        3      3      3
  DCP1B WILD-TYPE     59     48     28
D27V9, multiclass
        clus
vv       DCP1B MUTATED DCP1B WILD-TYPE
  CLUS_1             3              59
  CLUS_2             3              48
  CLUS_3             3              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCP1B MUTATED        2      6      1
  DCP1B WILD-TYPE     73     39     23
D27V10, multiclass
        clus
vv       DCP1B MUTATED DCP1B WILD-TYPE
  CLUS_1             2              73
  CLUS_2             6              39
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = RBMX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED        0      4      1
  RBMX WILD-TYPE     66     61     13
D28V1, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            0             66
  CLUS_2            4             61
  CLUS_3            1             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX MUTATED        1      1      3      0
  RBMX WILD-TYPE     37     28     42     34
D28V2, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            1             37
  CLUS_2            1             28
  CLUS_3            3             42
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBMX MUTATED        1      1      0      0      0
  RBMX WILD-TYPE     33     15     11     11     13
D28V3, multiclass
[1] "Remove cluster labels:" "RBMX MUTATED"          
clus
  RBMX MUTATED RBMX WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7922     TCGA-HZ-7925     TCGA-HZ-8001 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YY-A8LH 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBMX MUTATED        1      1      0      0      0      0      0
  RBMX WILD-TYPE     11     16     21      9      6     14      6
D28V4, multiclass
[1] "Remove cluster labels:" "RBMX MUTATED"          
clus
  RBMX MUTATED RBMX WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7922     TCGA-HZ-7925     TCGA-HZ-8001 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YY-A8LH 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED        2      2      1
  RBMX WILD-TYPE     69     41     31
D28V5, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             41
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED        3      2      0
  RBMX WILD-TYPE     64     61     16
D28V6, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            3             64
  CLUS_2            2             61
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX MUTATED        4      1      0      0
  RBMX WILD-TYPE     58     35     28     20
D28V7, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             35
  CLUS_3            0             28
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED        5      0      0
  RBMX WILD-TYPE     84     35     22
D28V8, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            5             84
  CLUS_2            0             35
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED        3      1      1
  RBMX WILD-TYPE     59     50     30
D28V9, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             50
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED        5      0      0
  RBMX WILD-TYPE     70     45     24
D28V10, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            5             70
  CLUS_2            0             45
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = ZNF880 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF880 MUTATED        2      2      0
  ZNF880 WILD-TYPE     64     63     14
D29V1, multiclass
        clus
vv       ZNF880 MUTATED ZNF880 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF880 MUTATED        0      1      2      1
  ZNF880 WILD-TYPE     38     28     43     33
D29V2, multiclass
        clus
vv       ZNF880 MUTATED ZNF880 WILD-TYPE
  CLUS_1              0               38
  CLUS_2              1               28
  CLUS_3              2               43
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF880 MUTATED        1      0      0      1      0
  ZNF880 WILD-TYPE     33     16     11     10     13
D29V3, multiclass
[1] "Remove cluster labels:" "ZNF880 MUTATED"        
clus
  ZNF880 MUTATED ZNF880 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQJ       TCGA-2L-AAQL       TCGA-3A-A9I5 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879       TCGA-F2-A44G 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A545 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N       TCGA-HV-A5A6 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8519 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7646 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7652 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF880 MUTATED        1      0      1      0      0      0      0
  ZNF880 WILD-TYPE     11     17     20      9      6     14      6
D29V4, multiclass
[1] "Remove cluster labels:" "ZNF880 MUTATED"        
clus
  ZNF880 MUTATED ZNF880 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQJ       TCGA-2L-AAQL       TCGA-3A-A9I5 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879       TCGA-F2-A44G 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A545 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N       TCGA-HV-A5A6 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8519 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7646 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7652 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF880 MUTATED        2      1      1
  ZNF880 WILD-TYPE     69     42     31
D29V5, multiclass
        clus
vv       ZNF880 MUTATED ZNF880 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               42
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF880 MUTATED        2      1      1
  ZNF880 WILD-TYPE     65     62     15
D29V6, multiclass
        clus
vv       ZNF880 MUTATED ZNF880 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              1               62
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF880 MUTATED        1      2      0      1
  ZNF880 WILD-TYPE     61     34     28     19
D29V7, multiclass
        clus
vv       ZNF880 MUTATED ZNF880 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              2               34
  CLUS_3              0               28
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF880 MUTATED        2      1      1
  ZNF880 WILD-TYPE     87     34     21
D29V8, multiclass
        clus
vv       ZNF880 MUTATED ZNF880 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              1               34
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF880 MUTATED        2      1      1
  ZNF880 WILD-TYPE     60     50     30
D29V9, multiclass
        clus
vv       ZNF880 MUTATED ZNF880 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               50
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF880 MUTATED        1      2      1
  ZNF880 WILD-TYPE     74     43     23
D29V10, multiclass
        clus
vv       ZNF880 MUTATED ZNF880 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              2               43
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = UBAC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBAC1 MUTATED        1      3      1
  UBAC1 WILD-TYPE     65     62     13
D30V1, multiclass
        clus
vv       UBAC1 MUTATED UBAC1 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             3              62
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBAC1 MUTATED        3      0      1      1
  UBAC1 WILD-TYPE     35     29     44     33
D30V2, multiclass
        clus
vv       UBAC1 MUTATED UBAC1 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBAC1 MUTATED        2      1      0      0      1
  UBAC1 WILD-TYPE     32     15     11     11     12
D30V3, multiclass
        clus
vv       UBAC1 MUTATED UBAC1 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             1              15
  CLUS_3             0              11
  CLUS_4             0              11
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UBAC1 MUTATED        0      1      2      0      0      1      0
  UBAC1 WILD-TYPE     12     16     19      9      6     13      6
D30V4, multiclass
        clus
vv       UBAC1 MUTATED UBAC1 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             2              19
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             0               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBAC1 MUTATED        5      0      0
  UBAC1 WILD-TYPE     66     43     32
D30V5, multiclass
        clus
vv       UBAC1 MUTATED UBAC1 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              43
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBAC1 MUTATED        3      2      0
  UBAC1 WILD-TYPE     64     61     16
D30V6, multiclass
        clus
vv       UBAC1 MUTATED UBAC1 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBAC1 MUTATED        2      1      2      0
  UBAC1 WILD-TYPE     60     35     26     20
D30V7, multiclass
        clus
vv       UBAC1 MUTATED UBAC1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              35
  CLUS_3             2              26
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBAC1 MUTATED        5      0      0
  UBAC1 WILD-TYPE     84     35     22
D30V8, multiclass
        clus
vv       UBAC1 MUTATED UBAC1 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBAC1 MUTATED        3      1      0
  UBAC1 WILD-TYPE     59     50     31
D30V9, multiclass
        clus
vv       UBAC1 MUTATED UBAC1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBAC1 MUTATED        2      2      0
  UBAC1 WILD-TYPE     73     43     24
D30V10, multiclass
        clus
vv       UBAC1 MUTATED UBAC1 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = CASQ2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASQ2 MUTATED        4      3      1
  CASQ2 WILD-TYPE     62     62     13
D31V1, multiclass
        clus
vv       CASQ2 MUTATED CASQ2 WILD-TYPE
  CLUS_1             4              62
  CLUS_2             3              62
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASQ2 MUTATED        1      2      2      3
  CASQ2 WILD-TYPE     37     27     43     31
D31V2, multiclass
        clus
vv       CASQ2 MUTATED CASQ2 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             2              27
  CLUS_3             2              43
  CLUS_4             3              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASQ2 MUTATED        1      0      1      0      3
  CASQ2 WILD-TYPE     33     16     10     11     10
D31V3, multiclass
        clus
vv       CASQ2 MUTATED CASQ2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             3              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CASQ2 MUTATED        0      0      0      1      1      2      1
  CASQ2 WILD-TYPE     12     17     21      8      5     12      5
D31V4, multiclass
        clus
vv       CASQ2 MUTATED CASQ2 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             0              21
  CLUS_4             1               8
  CLUS_5             1               5
  CLUS_6             2              12
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASQ2 MUTATED        4      2      2
  CASQ2 WILD-TYPE     67     41     30
D31V5, multiclass
        clus
vv       CASQ2 MUTATED CASQ2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              41
  CLUS_3             2              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASQ2 MUTATED        2      4      2
  CASQ2 WILD-TYPE     65     59     14
D31V6, multiclass
        clus
vv       CASQ2 MUTATED CASQ2 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             4              59
  CLUS_3             2              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASQ2 MUTATED        3      2      2      1
  CASQ2 WILD-TYPE     59     34     26     19
D31V7, multiclass
        clus
vv       CASQ2 MUTATED CASQ2 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             2              34
  CLUS_3             2              26
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASQ2 MUTATED        4      2      2
  CASQ2 WILD-TYPE     85     33     20
D31V8, multiclass
        clus
vv       CASQ2 MUTATED CASQ2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             2              33
  CLUS_3             2              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASQ2 MUTATED        3      3      2
  CASQ2 WILD-TYPE     59     48     29
D31V9, multiclass
        clus
vv       CASQ2 MUTATED CASQ2 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             3              48
  CLUS_3             2              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASQ2 MUTATED        3      3      2
  CASQ2 WILD-TYPE     72     42     22
D31V10, multiclass
        clus
vv       CASQ2 MUTATED CASQ2 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             3              42
  CLUS_3             2              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = ZNF678 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF678 MUTATED        4      0      1
  ZNF678 WILD-TYPE     62     65     13
D32V1, multiclass
        clus
vv       ZNF678 MUTATED ZNF678 WILD-TYPE
  CLUS_1              4               62
  CLUS_2              0               65
  CLUS_3              1               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF678 MUTATED        2      2      0      1
  ZNF678 WILD-TYPE     36     27     45     33
D32V2, multiclass
        clus
vv       ZNF678 MUTATED ZNF678 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              2               27
  CLUS_3              0               45
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF678 MUTATED        0      2      1      1      1
  ZNF678 WILD-TYPE     34     14     10     10     12
D32V3, multiclass
        clus
vv       ZNF678 MUTATED ZNF678 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              2               14
  CLUS_3              1               10
  CLUS_4              1               10
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF678 MUTATED        0      2      0      0      0      2      1
  ZNF678 WILD-TYPE     12     15     21      9      6     12      5
D32V4, multiclass
        clus
vv       ZNF678 MUTATED ZNF678 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              2               15
  CLUS_3              0               21
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              2               12
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF678 MUTATED        2      2      1
  ZNF678 WILD-TYPE     69     41     31
D32V5, multiclass
        clus
vv       ZNF678 MUTATED ZNF678 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               41
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF678 MUTATED        3      2      0
  ZNF678 WILD-TYPE     64     61     16
D32V6, multiclass
        clus
vv       ZNF678 MUTATED ZNF678 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              2               61
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF678 MUTATED        0      2      3      0
  ZNF678 WILD-TYPE     62     34     25     20
D32V7, multiclass
        clus
vv       ZNF678 MUTATED ZNF678 WILD-TYPE
  CLUS_1              0               62
  CLUS_2              2               34
  CLUS_3              3               25
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF678 MUTATED        3      2      0
  ZNF678 WILD-TYPE     86     33     22
D32V8, multiclass
        clus
vv       ZNF678 MUTATED ZNF678 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              2               33
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF678 MUTATED        1      3      0
  ZNF678 WILD-TYPE     61     48     31
D32V9, multiclass
        clus
vv       ZNF678 MUTATED ZNF678 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              3               48
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF678 MUTATED        1      2      1
  ZNF678 WILD-TYPE     74     43     23
D32V10, multiclass
        clus
vv       ZNF678 MUTATED ZNF678 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              2               43
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = RBM12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        2      3      0
  RBM12 WILD-TYPE     64     62     14
D33V1, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             3              62
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM12 MUTATED        0      0      4      1
  RBM12 WILD-TYPE     38     29     41     33
D33V2, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             0              38
  CLUS_2             0              29
  CLUS_3             4              41
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM12 MUTATED        2      1      0      0      1
  RBM12 WILD-TYPE     32     15     11     11     12
D33V3, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             1              15
  CLUS_3             0              11
  CLUS_4             0              11
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM12 MUTATED        0      1      1      0      0      1      1
  RBM12 WILD-TYPE     12     16     20      9      6     13      5
D33V4, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        5      0      0
  RBM12 WILD-TYPE     66     43     32
D33V5, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              43
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        2      3      0
  RBM12 WILD-TYPE     65     60     16
D33V6, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM12 MUTATED        4      0      1      0
  RBM12 WILD-TYPE     58     36     27     20
D33V7, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              36
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        4      1      0
  RBM12 WILD-TYPE     85     34     22
D33V8, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        4      1      0
  RBM12 WILD-TYPE     58     50     31
D33V9, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        3      1      1
  RBM12 WILD-TYPE     72     44     23
D33V10, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             1              44
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = VWA3A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VWA3A MUTATED        2      3      0
  VWA3A WILD-TYPE     64     62     14
D34V1, multiclass
        clus
vv       VWA3A MUTATED VWA3A WILD-TYPE
  CLUS_1             2              64
  CLUS_2             3              62
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWA3A MUTATED        2      1      2      0
  VWA3A WILD-TYPE     36     28     43     34
D34V2, multiclass
        clus
vv       VWA3A MUTATED VWA3A WILD-TYPE
  CLUS_1             2              36
  CLUS_2             1              28
  CLUS_3             2              43
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VWA3A MUTATED        0      1      1      1      0
  VWA3A WILD-TYPE     34     15     10     10     13
D34V3, multiclass
        clus
vv       VWA3A MUTATED VWA3A WILD-TYPE
  CLUS_1             0              34
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VWA3A MUTATED        0      1      0      0      0      1      1
  VWA3A WILD-TYPE     12     16     21      9      6     13      5
D34V4, multiclass
        clus
vv       VWA3A MUTATED VWA3A WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VWA3A MUTATED        3      1      1
  VWA3A WILD-TYPE     68     42     31
D34V5, multiclass
        clus
vv       VWA3A MUTATED VWA3A WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              42
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VWA3A MUTATED        2      3      0
  VWA3A WILD-TYPE     65     60     16
D34V6, multiclass
        clus
vv       VWA3A MUTATED VWA3A WILD-TYPE
  CLUS_1             2              65
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWA3A MUTATED        3      1      1      0
  VWA3A WILD-TYPE     59     35     27     20
D34V7, multiclass
        clus
vv       VWA3A MUTATED VWA3A WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VWA3A MUTATED        4      1      0
  VWA3A WILD-TYPE     85     34     22
D34V8, multiclass
        clus
vv       VWA3A MUTATED VWA3A WILD-TYPE
  CLUS_1             4              85
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VWA3A MUTATED        4      1      0
  VWA3A WILD-TYPE     58     50     31
D34V9, multiclass
        clus
vv       VWA3A MUTATED VWA3A WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VWA3A MUTATED        2      2      1
  VWA3A WILD-TYPE     73     43     23
D34V10, multiclass
        clus
vv       VWA3A MUTATED VWA3A WILD-TYPE
  CLUS_1             2              73
  CLUS_2             2              43
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = NBPF16 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF16 MUTATED        4      3      0
  NBPF16 WILD-TYPE     62     62     14
D35V1, multiclass
        clus
vv       NBPF16 MUTATED NBPF16 WILD-TYPE
  CLUS_1              4               62
  CLUS_2              3               62
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF16 MUTATED        0      2      3      2
  NBPF16 WILD-TYPE     38     27     42     32
D35V2, multiclass
        clus
vv       NBPF16 MUTATED NBPF16 WILD-TYPE
  CLUS_1              0               38
  CLUS_2              2               27
  CLUS_3              3               42
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF16 MUTATED        1      0      0      1      0
  NBPF16 WILD-TYPE     33     16     11     10     13
D35V3, multiclass
[1] "Remove cluster labels:" "NBPF16 MUTATED"        
clus
  NBPF16 MUTATED NBPF16 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-HV-A5A6       TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-HZ-8001       TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-HZ-8315       TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-7891       TCGA-IB-7893       TCGA-IB-8126       TCGA-IB-8127 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUS 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-M8-A5N4       TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-S4-A8RM       TCGA-S4-A8RO 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBPF16 MUTATED        0      0      2      0      0      0      0
  NBPF16 WILD-TYPE     12     17     19      9      6     14      6
D35V4, multiclass
[1] "Remove cluster labels:" "NBPF16 MUTATED"        
clus
  NBPF16 MUTATED NBPF16 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-HV-A5A6       TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-HZ-8001       TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-HZ-8315       TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-7891       TCGA-IB-7893       TCGA-IB-8126       TCGA-IB-8127 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUS 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-M8-A5N4       TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-S4-A8RM       TCGA-S4-A8RO 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" "NBPF16 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF16 MUTATED        4      1      2
  NBPF16 WILD-TYPE     67     42     30
D35V5, multiclass
        clus
vv       NBPF16 MUTATED NBPF16 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              1               42
  CLUS_3              2               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF16 MUTATED        1      4      2
  NBPF16 WILD-TYPE     66     59     14
D35V6, multiclass
        clus
vv       NBPF16 MUTATED NBPF16 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              4               59
  CLUS_3              2               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF16 MUTATED        2      1      2      2
  NBPF16 WILD-TYPE     60     35     26     18
D35V7, multiclass
        clus
vv       NBPF16 MUTATED NBPF16 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               35
  CLUS_3              2               26
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF16 MUTATED        4      1      2
  NBPF16 WILD-TYPE     85     34     20
D35V8, multiclass
        clus
vv       NBPF16 MUTATED NBPF16 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              1               34
  CLUS_3              2               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF16 MUTATED        3      3      0
  NBPF16 WILD-TYPE     59     48     31
D35V9, multiclass
        clus
vv       NBPF16 MUTATED NBPF16 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              3               48
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF16 MUTATED        3      0      3
  NBPF16 WILD-TYPE     72     45     21
D35V10, multiclass
        clus
vv       NBPF16 MUTATED NBPF16 WILD-TYPE
  CLUS_1              3               72
  CLUS_2              0               45
  CLUS_3              3               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = PARP10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP10 MUTATED        2      3      0
  PARP10 WILD-TYPE     64     62     14
D36V1, multiclass
        clus
vv       PARP10 MUTATED PARP10 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              3               62
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP10 MUTATED        2      0      1      2
  PARP10 WILD-TYPE     36     29     44     32
D36V2, multiclass
        clus
vv       PARP10 MUTATED PARP10 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              0               29
  CLUS_3              1               44
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP10 MUTATED        2      0      1      0      1
  PARP10 WILD-TYPE     32     16     10     11     12
D36V3, multiclass
        clus
vv       PARP10 MUTATED PARP10 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              0               16
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PARP10 MUTATED        1      0      1      0      0      1      1
  PARP10 WILD-TYPE     11     17     20      9      6     13      5
D36V4, multiclass
        clus
vv       PARP10 MUTATED PARP10 WILD-TYPE
  CLUS_1              1               11
  CLUS_2              0               17
  CLUS_3              1               20
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP10 MUTATED        3      1      1
  PARP10 WILD-TYPE     68     42     31
D36V5, multiclass
        clus
vv       PARP10 MUTATED PARP10 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               42
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP10 MUTATED        2      3      0
  PARP10 WILD-TYPE     65     60     16
D36V6, multiclass
        clus
vv       PARP10 MUTATED PARP10 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              3               60
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP10 MUTATED        1      2      1      1
  PARP10 WILD-TYPE     61     34     27     19
D36V7, multiclass
        clus
vv       PARP10 MUTATED PARP10 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              2               34
  CLUS_3              1               27
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP10 MUTATED        4      0      1
  PARP10 WILD-TYPE     85     35     21
D36V8, multiclass
        clus
vv       PARP10 MUTATED PARP10 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              0               35
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP10 MUTATED        4      1      0
  PARP10 WILD-TYPE     58     50     31
D36V9, multiclass
        clus
vv       PARP10 MUTATED PARP10 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               50
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP10 MUTATED        1      3      1
  PARP10 WILD-TYPE     74     42     23
D36V10, multiclass
        clus
vv       PARP10 MUTATED PARP10 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              3               42
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = TGFBR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        5      3      0
  TGFBR2 WILD-TYPE     61     62     14
D37V1, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5               61
  CLUS_2              3               62
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        4      0      1      3
  TGFBR2 WILD-TYPE     34     29     44     31
D37V2, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              4               34
  CLUS_2              0               29
  CLUS_3              1               44
  CLUS_4              3               31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        2      2      1      0      0
  TGFBR2 WILD-TYPE     32     14     10     11     13
D37V3, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              2               14
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGFBR2 MUTATED        0      2      1      0      0      1      1
  TGFBR2 WILD-TYPE     12     15     20      9      6     13      5
D37V4, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              2               15
  CLUS_3              1               20
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        5      2      1
  TGFBR2 WILD-TYPE     66     41     31
D37V5, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              2               41
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        3      4      1
  TGFBR2 WILD-TYPE     64     59     15
D37V6, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              4               59
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        3      1      2      2
  TGFBR2 WILD-TYPE     59     35     26     18
D37V7, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               35
  CLUS_3              2               26
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        7      0      1
  TGFBR2 WILD-TYPE     82     35     21
D37V8, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              7               82
  CLUS_2              0               35
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        6      1      1
  TGFBR2 WILD-TYPE     56     50     30
D37V9, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              1               50
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        6      1      1
  TGFBR2 WILD-TYPE     69     44     23
D37V10, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              6               69
  CLUS_2              1               44
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = HACL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HACL1 MUTATED        2      3      0
  HACL1 WILD-TYPE     64     62     14
D38V1, multiclass
        clus
vv       HACL1 MUTATED HACL1 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             3              62
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HACL1 MUTATED        0      1      3      1
  HACL1 WILD-TYPE     38     28     42     33
D38V2, multiclass
        clus
vv       HACL1 MUTATED HACL1 WILD-TYPE
  CLUS_1             0              38
  CLUS_2             1              28
  CLUS_3             3              42
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HACL1 MUTATED        2      0      1      0      0
  HACL1 WILD-TYPE     32     16     10     11     13
D38V3, multiclass
        clus
vv       HACL1 MUTATED HACL1 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HACL1 MUTATED        2      0      0      1      0      0      0
  HACL1 WILD-TYPE     10     17     21      8      6     14      6
D38V4, multiclass
        clus
vv       HACL1 MUTATED HACL1 WILD-TYPE
  CLUS_1             2              10
  CLUS_2             0              17
  CLUS_3             0              21
  CLUS_4             1               8
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             0               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HACL1 MUTATED        2      1      2
  HACL1 WILD-TYPE     69     42     30
D38V5, multiclass
        clus
vv       HACL1 MUTATED HACL1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             2              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HACL1 MUTATED        3      1      1
  HACL1 WILD-TYPE     64     62     15
D38V6, multiclass
        clus
vv       HACL1 MUTATED HACL1 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             1              62
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HACL1 MUTATED        3      1      1      0
  HACL1 WILD-TYPE     59     35     27     20
D38V7, multiclass
        clus
vv       HACL1 MUTATED HACL1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HACL1 MUTATED        3      1      1
  HACL1 WILD-TYPE     86     34     21
D38V8, multiclass
        clus
vv       HACL1 MUTATED HACL1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             1              34
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HACL1 MUTATED        2      2      1
  HACL1 WILD-TYPE     60     49     30
D38V9, multiclass
        clus
vv       HACL1 MUTATED HACL1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              49
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HACL1 MUTATED        3      1      1
  HACL1 WILD-TYPE     72     44     23
D38V10, multiclass
        clus
vv       HACL1 MUTATED HACL1 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             1              44
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = PRKRA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKRA MUTATED        3      0      1
  PRKRA WILD-TYPE     63     65     13
D39V1, multiclass
        clus
vv       PRKRA MUTATED PRKRA WILD-TYPE
  CLUS_1             3              63
  CLUS_2             0              65
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKRA MUTATED        2      0      1      1
  PRKRA WILD-TYPE     36     29     44     33
D39V2, multiclass
        clus
vv       PRKRA MUTATED PRKRA WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKRA MUTATED        0      1      1      0      0
  PRKRA WILD-TYPE     34     15     10     11     13
D39V3, multiclass
[1] "Remove cluster labels:" "PRKRA MUTATED"         
clus
  PRKRA MUTATED PRKRA WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRKRA MUTATED        0      1      0      1      0      0      0
  PRKRA WILD-TYPE     12     16     21      8      6     14      6
D39V4, multiclass
[1] "Remove cluster labels:" "PRKRA MUTATED"         
clus
  PRKRA MUTATED PRKRA WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKRA MUTATED        2      2      0
  PRKRA WILD-TYPE     69     41     32
D39V5, multiclass
        clus
vv       PRKRA MUTATED PRKRA WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              41
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKRA MUTATED        2      2      0
  PRKRA WILD-TYPE     65     61     16
D39V6, multiclass
        clus
vv       PRKRA MUTATED PRKRA WILD-TYPE
  CLUS_1             2              65
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKRA MUTATED        2      2      0      0
  PRKRA WILD-TYPE     60     34     28     20
D39V7, multiclass
        clus
vv       PRKRA MUTATED PRKRA WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              34
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKRA MUTATED        3      1      0
  PRKRA WILD-TYPE     86     34     22
D39V8, multiclass
        clus
vv       PRKRA MUTATED PRKRA WILD-TYPE
  CLUS_1             3              86
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKRA MUTATED        2      1      1
  PRKRA WILD-TYPE     60     50     30
D39V9, multiclass
        clus
vv       PRKRA MUTATED PRKRA WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              50
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKRA MUTATED        3      1      0
  PRKRA WILD-TYPE     72     44     24
D39V10, multiclass
        clus
vv       PRKRA MUTATED PRKRA WILD-TYPE
  CLUS_1             3              72
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = SORBS2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        4      2      0
  SORBS2 WILD-TYPE     62     63     14
D40V1, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              4               62
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS2 MUTATED        1      0      4      1
  SORBS2 WILD-TYPE     37     29     41     33
D40V2, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              0               29
  CLUS_3              4               41
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SORBS2 MUTATED        1      1      1      0      0
  SORBS2 WILD-TYPE     33     15     10     11     13
D40V3, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              1               15
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SORBS2 MUTATED        0      1      0      0      0      0      2
  SORBS2 WILD-TYPE     12     16     21      9      6     14      4
D40V4, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              1               16
  CLUS_3              0               21
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              2                4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        5      1      0
  SORBS2 WILD-TYPE     66     42     32
D40V5, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              1               42
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        2      4      0
  SORBS2 WILD-TYPE     65     59     16
D40V6, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              4               59
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS2 MUTATED        5      1      0      0
  SORBS2 WILD-TYPE     57     35     28     20
D40V7, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               35
  CLUS_3              0               28
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        6      0      0
  SORBS2 WILD-TYPE     83     35     22
D40V8, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              6               83
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        5      1      0
  SORBS2 WILD-TYPE     57     50     31
D40V9, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               50
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        4      2      0
  SORBS2 WILD-TYPE     71     43     24
D40V10, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              4               71
  CLUS_2              2               43
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = CD86 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD86 MUTATED        1      5      0
  CD86 WILD-TYPE     65     60     14
D41V1, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            1             65
  CLUS_2            5             60
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD86 MUTATED        2      1      3      0
  CD86 WILD-TYPE     36     28     42     34
D41V2, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            2             36
  CLUS_2            1             28
  CLUS_3            3             42
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD86 MUTATED        4      0      1      0      0
  CD86 WILD-TYPE     30     16     10     11     13
D41V3, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            4             30
  CLUS_2            0             16
  CLUS_3            1             10
  CLUS_4            0             11
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD86 MUTATED        2      0      1      0      0      0      2
  CD86 WILD-TYPE     10     17     20      9      6     14      4
D41V4, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            2             10
  CLUS_2            0             17
  CLUS_3            1             20
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            0             14
  CLUS_7            2              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD86 MUTATED        3      3      0
  CD86 WILD-TYPE     68     40     32
D41V5, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            3             40
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD86 MUTATED        3      3      0
  CD86 WILD-TYPE     64     60     16
D41V6, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            3             64
  CLUS_2            3             60
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD86 MUTATED        4      2      0      0
  CD86 WILD-TYPE     58     34     28     20
D41V7, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            2             34
  CLUS_3            0             28
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD86 MUTATED        5      1      0
  CD86 WILD-TYPE     84     34     22
D41V8, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            5             84
  CLUS_2            1             34
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD86 MUTATED        4      1      1
  CD86 WILD-TYPE     58     50     30
D41V9, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             50
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD86 MUTATED        4      2      0
  CD86 WILD-TYPE     71     43     24
D41V10, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            4             71
  CLUS_2            2             43
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = RNF32 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF32 MUTATED        3      1      1
  RNF32 WILD-TYPE     63     64     13
D42V1, multiclass
        clus
vv       RNF32 MUTATED RNF32 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF32 MUTATED        2      2      0      1
  RNF32 WILD-TYPE     36     27     45     33
D42V2, multiclass
        clus
vv       RNF32 MUTATED RNF32 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             2              27
  CLUS_3             0              45
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF32 MUTATED        0      1      1      1      1
  RNF32 WILD-TYPE     34     15     10     10     12
D42V3, multiclass
        clus
vv       RNF32 MUTATED RNF32 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF32 MUTATED        0      1      0      0      0      2      1
  RNF32 WILD-TYPE     12     16     21      9      6     12      5
D42V4, multiclass
        clus
vv       RNF32 MUTATED RNF32 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             2              12
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF32 MUTATED        2      2      1
  RNF32 WILD-TYPE     69     41     31
D42V5, multiclass
        clus
vv       RNF32 MUTATED RNF32 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              41
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF32 MUTATED        3      2      0
  RNF32 WILD-TYPE     64     61     16
D42V6, multiclass
        clus
vv       RNF32 MUTATED RNF32 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF32 MUTATED        0      2      3      0
  RNF32 WILD-TYPE     62     34     25     20
D42V7, multiclass
        clus
vv       RNF32 MUTATED RNF32 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             2              34
  CLUS_3             3              25
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF32 MUTATED        3      2      0
  RNF32 WILD-TYPE     86     33     22
D42V8, multiclass
        clus
vv       RNF32 MUTATED RNF32 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2              33
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF32 MUTATED        1      2      1
  RNF32 WILD-TYPE     61     49     30
D42V9, multiclass
        clus
vv       RNF32 MUTATED RNF32 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              49
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF32 MUTATED        1      2      1
  RNF32 WILD-TYPE     74     43     23
D42V10, multiclass
        clus
vv       RNF32 MUTATED RNF32 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2              43
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = SDCBP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDCBP MUTATED        5      0      1
  SDCBP WILD-TYPE     61     65     13
D43V1, multiclass
        clus
vv       SDCBP MUTATED SDCBP WILD-TYPE
  CLUS_1             5              61
  CLUS_2             0              65
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDCBP MUTATED        3      2      0      1
  SDCBP WILD-TYPE     35     27     45     33
D43V2, multiclass
        clus
vv       SDCBP MUTATED SDCBP WILD-TYPE
  CLUS_1             3              35
  CLUS_2             2              27
  CLUS_3             0              45
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SDCBP MUTATED        1      2      0      1      1
  SDCBP WILD-TYPE     33     14     11     10     12
D43V3, multiclass
        clus
vv       SDCBP MUTATED SDCBP WILD-TYPE
  CLUS_1             1              33
  CLUS_2             2              14
  CLUS_3             0              11
  CLUS_4             1              10
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SDCBP MUTATED        0      2      1      0      0      2      0
  SDCBP WILD-TYPE     12     15     20      9      6     12      6
D43V4, multiclass
        clus
vv       SDCBP MUTATED SDCBP WILD-TYPE
  CLUS_1             0              12
  CLUS_2             2              15
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             2              12
  CLUS_7             0               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDCBP MUTATED        3      2      1
  SDCBP WILD-TYPE     68     41     31
D43V5, multiclass
        clus
vv       SDCBP MUTATED SDCBP WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              41
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDCBP MUTATED        3      2      1
  SDCBP WILD-TYPE     64     61     15
D43V6, multiclass
        clus
vv       SDCBP MUTATED SDCBP WILD-TYPE
  CLUS_1             3              64
  CLUS_2             2              61
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDCBP MUTATED        0      2      3      1
  SDCBP WILD-TYPE     62     34     25     19
D43V7, multiclass
        clus
vv       SDCBP MUTATED SDCBP WILD-TYPE
  CLUS_1             0              62
  CLUS_2             2              34
  CLUS_3             3              25
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDCBP MUTATED        3      2      1
  SDCBP WILD-TYPE     86     33     21
D43V8, multiclass
        clus
vv       SDCBP MUTATED SDCBP WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2              33
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDCBP MUTATED        1      4      0
  SDCBP WILD-TYPE     61     47     31
D43V9, multiclass
        clus
vv       SDCBP MUTATED SDCBP WILD-TYPE
  CLUS_1             1              61
  CLUS_2             4              47
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDCBP MUTATED        1      3      1
  SDCBP WILD-TYPE     74     42     23
D43V10, multiclass
        clus
vv       SDCBP MUTATED SDCBP WILD-TYPE
  CLUS_1             1              74
  CLUS_2             3              42
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = CDC27 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        5      2      0
  CDC27 WILD-TYPE     61     63     14
D44V1, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             5              61
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        1      2      0      4
  CDC27 WILD-TYPE     37     27     45     30
D44V2, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             2              27
  CLUS_3             0              45
  CLUS_4             4              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC27 MUTATED        2      0      0      0      0
  CDC27 WILD-TYPE     32     16     11     11     13
D44V3, multiclass
[1] "Remove cluster labels:" "CDC27 MUTATED"         
clus
  CDC27 MUTATED CDC27 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUS 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC27 MUTATED        0      0      1      0      0      0      1
  CDC27 WILD-TYPE     12     17     20      9      6     14      5
D44V4, multiclass
[1] "Remove cluster labels:" "CDC27 MUTATED"         
clus
  CDC27 MUTATED CDC27 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUS 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        3      3      1
  CDC27 WILD-TYPE     68     40     31
D44V5, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             3              40
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        5      2      0
  CDC27 WILD-TYPE     62     61     16
D44V6, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             5              62
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        2      2      3      0
  CDC27 WILD-TYPE     60     34     25     20
D44V7, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              34
  CLUS_3             3              25
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        4      2      1
  CDC27 WILD-TYPE     85     33     21
D44V8, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             2              33
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        1      3      3
  CDC27 WILD-TYPE     61     48     28
D44V9, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             3              48
  CLUS_3             3              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        2      3      2
  CDC27 WILD-TYPE     73     42     22
D44V10, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             3              42
  CLUS_3             2              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = NLRP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP2 MUTATED        2      3      1
  NLRP2 WILD-TYPE     64     62     13
D45V1, multiclass
        clus
vv       NLRP2 MUTATED NLRP2 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             3              62
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP2 MUTATED        3      0      2      1
  NLRP2 WILD-TYPE     35     29     43     33
D45V2, multiclass
        clus
vv       NLRP2 MUTATED NLRP2 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             0              29
  CLUS_3             2              43
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLRP2 MUTATED        2      1      1      0      0
  NLRP2 WILD-TYPE     32     15     10     11     13
D45V3, multiclass
        clus
vv       NLRP2 MUTATED NLRP2 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NLRP2 MUTATED        0      1      1      0      0      0      2
  NLRP2 WILD-TYPE     12     16     20      9      6     14      4
D45V4, multiclass
        clus
vv       NLRP2 MUTATED NLRP2 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP2 MUTATED        5      1      0
  NLRP2 WILD-TYPE     66     42     32
D45V5, multiclass
        clus
vv       NLRP2 MUTATED NLRP2 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP2 MUTATED        3      3      0
  NLRP2 WILD-TYPE     64     60     16
D45V6, multiclass
        clus
vv       NLRP2 MUTATED NLRP2 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP2 MUTATED        5      1      0      0
  NLRP2 WILD-TYPE     57     35     28     20
D45V7, multiclass
        clus
vv       NLRP2 MUTATED NLRP2 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             1              35
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP2 MUTATED        6      0      0
  NLRP2 WILD-TYPE     83     35     22
D45V8, multiclass
        clus
vv       NLRP2 MUTATED NLRP2 WILD-TYPE
  CLUS_1             6              83
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP2 MUTATED        6      0      0
  NLRP2 WILD-TYPE     56     51     31
D45V9, multiclass
        clus
vv       NLRP2 MUTATED NLRP2 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             0              51
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP2 MUTATED        4      2      0
  NLRP2 WILD-TYPE     71     43     24
D45V10, multiclass
        clus
vv       NLRP2 MUTATED NLRP2 WILD-TYPE
  CLUS_1             4              71
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = PLIN4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLIN4 MUTATED        6      1      0
  PLIN4 WILD-TYPE     60     64     14
D46V1, multiclass
        clus
vv       PLIN4 MUTATED PLIN4 WILD-TYPE
  CLUS_1             6              60
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLIN4 MUTATED        3      1      1      2
  PLIN4 WILD-TYPE     35     28     44     32
D46V2, multiclass
        clus
vv       PLIN4 MUTATED PLIN4 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             1              28
  CLUS_3             1              44
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLIN4 MUTATED        1      1      1      1      0
  PLIN4 WILD-TYPE     33     15     10     10     13
D46V3, multiclass
        clus
vv       PLIN4 MUTATED PLIN4 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLIN4 MUTATED        0      1      2      0      0      0      1
  PLIN4 WILD-TYPE     12     16     19      9      6     14      5
D46V4, multiclass
        clus
vv       PLIN4 MUTATED PLIN4 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             2              19
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLIN4 MUTATED        3      2      2
  PLIN4 WILD-TYPE     68     41     30
D46V5, multiclass
        clus
vv       PLIN4 MUTATED PLIN4 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              41
  CLUS_3             2              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLIN4 MUTATED        3      2      2
  PLIN4 WILD-TYPE     64     61     14
D46V6, multiclass
        clus
vv       PLIN4 MUTATED PLIN4 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             2              61
  CLUS_3             2              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLIN4 MUTATED        3      1      1      2
  PLIN4 WILD-TYPE     59     35     27     18
D46V7, multiclass
        clus
vv       PLIN4 MUTATED PLIN4 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLIN4 MUTATED        5      0      2
  PLIN4 WILD-TYPE     84     35     20
D46V8, multiclass
        clus
vv       PLIN4 MUTATED PLIN4 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             0              35
  CLUS_3             2              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLIN4 MUTATED        4      3      0
  PLIN4 WILD-TYPE     58     48     31
D46V9, multiclass
        clus
vv       PLIN4 MUTATED PLIN4 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             3              48
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLIN4 MUTATED        3      2      2
  PLIN4 WILD-TYPE     72     43     22
D46V10, multiclass
        clus
vv       PLIN4 MUTATED PLIN4 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             2              43
  CLUS_3             2              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = CBX3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CBX3 MUTATED        1      3      0
  CBX3 WILD-TYPE     65     62     14
D47V1, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            1             65
  CLUS_2            3             62
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBX3 MUTATED        0      2      2      0
  CBX3 WILD-TYPE     38     27     43     34
D47V2, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            0             38
  CLUS_2            2             27
  CLUS_3            2             43
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBX3 MUTATED        1      0      0      0      0
  CBX3 WILD-TYPE     33     16     11     11     13
D47V3, multiclass
[1] "Remove cluster labels:" "CBX3 MUTATED"          
clus
  CBX3 MUTATED CBX3 WILD-TYPE 
             1             84 
    TCGA-2L-AAQA     TCGA-2L-AAQJ     TCGA-2L-AAQL     TCGA-3A-A9I5 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879     TCGA-F2-A44G 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A545 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N     TCGA-HV-A5A6 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925     TCGA-HZ-8001 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CBX3 MUTATED        1      0      0      0      0      0      0
  CBX3 WILD-TYPE     11     17     21      9      6     14      6
D47V4, multiclass
[1] "Remove cluster labels:" "CBX3 MUTATED"          
clus
  CBX3 MUTATED CBX3 WILD-TYPE 
             1             84 
    TCGA-2L-AAQA     TCGA-2L-AAQJ     TCGA-2L-AAQL     TCGA-3A-A9I5 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879     TCGA-F2-A44G 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A545 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N     TCGA-HV-A5A6 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925     TCGA-HZ-8001 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CBX3 MUTATED        2      2      0
  CBX3 WILD-TYPE     69     41     32
D47V5, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             41
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CBX3 MUTATED        2      2      0
  CBX3 WILD-TYPE     65     61     16
D47V6, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            2             61
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBX3 MUTATED        2      2      0      0
  CBX3 WILD-TYPE     60     34     28     20
D47V7, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            2             34
  CLUS_3            0             28
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CBX3 MUTATED        2      2      0
  CBX3 WILD-TYPE     87     33     22
D47V8, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2             33
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CBX3 MUTATED        2      1      1
  CBX3 WILD-TYPE     60     50     30
D47V9, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             50
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CBX3 MUTATED        2      2      0
  CBX3 WILD-TYPE     73     43     24
D47V10, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            2             73
  CLUS_2            2             43
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = SUZ12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SUZ12 MUTATED        3      1      0
  SUZ12 WILD-TYPE     63     64     14
D48V1, multiclass
        clus
vv       SUZ12 MUTATED SUZ12 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUZ12 MUTATED        1      0      1      2
  SUZ12 WILD-TYPE     37     29     44     32
D48V2, multiclass
        clus
vv       SUZ12 MUTATED SUZ12 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUZ12 MUTATED        1      2      1      0      0
  SUZ12 WILD-TYPE     33     14     10     11     13
D48V3, multiclass
        clus
vv       SUZ12 MUTATED SUZ12 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             2              14
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SUZ12 MUTATED        0      2      0      0      0      0      2
  SUZ12 WILD-TYPE     12     15     21      9      6     14      4
D48V4, multiclass
        clus
vv       SUZ12 MUTATED SUZ12 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             2              15
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SUZ12 MUTATED        3      1      0
  SUZ12 WILD-TYPE     68     42     32
D48V5, multiclass
        clus
vv       SUZ12 MUTATED SUZ12 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SUZ12 MUTATED        1      3      0
  SUZ12 WILD-TYPE     66     60     16
D48V6, multiclass
        clus
vv       SUZ12 MUTATED SUZ12 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUZ12 MUTATED        1      1      2      0
  SUZ12 WILD-TYPE     61     35     26     20
D48V7, multiclass
        clus
vv       SUZ12 MUTATED SUZ12 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             2              26
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SUZ12 MUTATED        4      0      0
  SUZ12 WILD-TYPE     85     35     22
D48V8, multiclass
        clus
vv       SUZ12 MUTATED SUZ12 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SUZ12 MUTATED        3      1      0
  SUZ12 WILD-TYPE     59     50     31
D48V9, multiclass
        clus
vv       SUZ12 MUTATED SUZ12 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SUZ12 MUTATED        3      1      0
  SUZ12 WILD-TYPE     72     44     24
D48V10, multiclass
        clus
vv       SUZ12 MUTATED SUZ12 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = MTBP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTBP MUTATED        2      1      0
  MTBP WILD-TYPE     64     64     14
D49V1, multiclass
        clus
vv       MTBP MUTATED MTBP WILD-TYPE
  CLUS_1            2             64
  CLUS_2            1             64
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTBP MUTATED        0      1      0      2
  MTBP WILD-TYPE     38     28     45     32
D49V2, multiclass
        clus
vv       MTBP MUTATED MTBP WILD-TYPE
  CLUS_1            0             38
  CLUS_2            1             28
  CLUS_3            0             45
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTBP MUTATED        0      1      0      0      2
  MTBP WILD-TYPE     34     15     11     11     11
D49V3, multiclass
        clus
vv       MTBP MUTATED MTBP WILD-TYPE
  CLUS_1            0             34
  CLUS_2            1             15
  CLUS_3            0             11
  CLUS_4            0             11
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTBP MUTATED        0      1      0      0      0      2      0
  MTBP WILD-TYPE     12     16     21      9      6     12      6
D49V4, multiclass
        clus
vv       MTBP MUTATED MTBP WILD-TYPE
  CLUS_1            0             12
  CLUS_2            1             16
  CLUS_3            0             21
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            2             12
  CLUS_7            0              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTBP MUTATED        2      1      0
  MTBP WILD-TYPE     69     42     32
D49V5, multiclass
        clus
vv       MTBP MUTATED MTBP WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             42
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTBP MUTATED        2      1      0
  MTBP WILD-TYPE     65     62     16
D49V6, multiclass
        clus
vv       MTBP MUTATED MTBP WILD-TYPE
  CLUS_1            2             65
  CLUS_2            1             62
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTBP MUTATED        1      1      1      0
  MTBP WILD-TYPE     61     35     27     20
D49V7, multiclass
        clus
vv       MTBP MUTATED MTBP WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             35
  CLUS_3            1             27
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTBP MUTATED        2      1      0
  MTBP WILD-TYPE     87     34     22
D49V8, multiclass
        clus
vv       MTBP MUTATED MTBP WILD-TYPE
  CLUS_1            2             87
  CLUS_2            1             34
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTBP MUTATED        1      2      0
  MTBP WILD-TYPE     61     49     31
D49V9, multiclass
        clus
vv       MTBP MUTATED MTBP WILD-TYPE
  CLUS_1            1             61
  CLUS_2            2             49
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTBP MUTATED        0      2      1
  MTBP WILD-TYPE     75     43     23
D49V10, multiclass
        clus
vv       MTBP MUTATED MTBP WILD-TYPE
  CLUS_1            0             75
  CLUS_2            2             43
  CLUS_3            1             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = SYT14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT14 MUTATED        1      2      1
  SYT14 WILD-TYPE     65     63     13
D50V1, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             2              63
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT14 MUTATED        2      0      1      1
  SYT14 WILD-TYPE     36     29     44     33
D50V2, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT14 MUTATED        1      0      1      0      2
  SYT14 WILD-TYPE     33     16     10     11     11
D50V3, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYT14 MUTATED        0      0      0      0      0      2      2
  SYT14 WILD-TYPE     12     17     21      9      6     12      4
D50V4, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             2              12
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT14 MUTATED        3      1      0
  SYT14 WILD-TYPE     68     42     32
D50V5, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT14 MUTATED        1      3      0
  SYT14 WILD-TYPE     66     60     16
D50V6, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT14 MUTATED        2      1      1      0
  SYT14 WILD-TYPE     60     35     27     20
D50V7, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT14 MUTATED        4      0      0
  SYT14 WILD-TYPE     85     35     22
D50V8, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT14 MUTATED        3      0      0
  SYT14 WILD-TYPE     59     51     31
D50V9, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              51
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT14 MUTATED        1      2      0
  SYT14 WILD-TYPE     74     43     24
D50V10, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = RNF43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        3      4      1
  RNF43 WILD-TYPE     63     61     13
D51V1, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             4              61
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED        6      0      1      1
  RNF43 WILD-TYPE     32     29     44     33
D51V2, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             6              32
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        4      0      1      0      0
  RNF43 WILD-TYPE     30     16     10     11     13
D51V3, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF43 MUTATED        2      0      2      0      0      0      1
  RNF43 WILD-TYPE     10     17     19      9      6     14      5
D51V4, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             2              10
  CLUS_2             0              17
  CLUS_3             2              19
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        7      1      0
  RNF43 WILD-TYPE     64     42     32
D51V5, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        2      6      0
  RNF43 WILD-TYPE     65     57     16
D51V6, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             6              57
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED        5      1      2      0
  RNF43 WILD-TYPE     57     35     26     20
D51V7, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             1              35
  CLUS_3             2              26
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        8      0      0
  RNF43 WILD-TYPE     81     35     22
D51V8, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             8              81
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        6      1      1
  RNF43 WILD-TYPE     56     50     30
D51V9, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              50
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        6      2      0
  RNF43 WILD-TYPE     69     43     24
D51V10, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             6              69
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = AAK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAK1 MUTATED        2      0      2
  AAK1 WILD-TYPE     64     65     12
D52V1, multiclass
        clus
vv       AAK1 MUTATED AAK1 WILD-TYPE
  CLUS_1            2             64
  CLUS_2            0             65
  CLUS_3            2             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAK1 MUTATED        1      0      1      2
  AAK1 WILD-TYPE     37     29     44     32
D52V2, multiclass
        clus
vv       AAK1 MUTATED AAK1 WILD-TYPE
  CLUS_1            1             37
  CLUS_2            0             29
  CLUS_3            1             44
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AAK1 MUTATED        2      0      0      1      0
  AAK1 WILD-TYPE     32     16     11     10     13
D52V3, multiclass
        clus
vv       AAK1 MUTATED AAK1 WILD-TYPE
  CLUS_1            2             32
  CLUS_2            0             16
  CLUS_3            0             11
  CLUS_4            1             10
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AAK1 MUTATED        0      0      2      0      1      0      0
  AAK1 WILD-TYPE     12     17     19      9      5     14      6
D52V4, multiclass
        clus
vv       AAK1 MUTATED AAK1 WILD-TYPE
  CLUS_1            0             12
  CLUS_2            0             17
  CLUS_3            2             19
  CLUS_4            0              9
  CLUS_5            1              5
  CLUS_6            0             14
  CLUS_7            0              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAK1 MUTATED        1      0      3
  AAK1 WILD-TYPE     70     43     29
D52V5, multiclass
        clus
vv       AAK1 MUTATED AAK1 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            0             43
  CLUS_3            3             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAK1 MUTATED        1      1      2
  AAK1 WILD-TYPE     66     62     14
D52V6, multiclass
        clus
vv       AAK1 MUTATED AAK1 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            1             62
  CLUS_3            2             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAK1 MUTATED        0      0      1      3
  AAK1 WILD-TYPE     62     36     27     17
D52V7, multiclass
        clus
vv       AAK1 MUTATED AAK1 WILD-TYPE
  CLUS_1            0             62
  CLUS_2            0             36
  CLUS_3            1             27
  CLUS_4            3             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAK1 MUTATED        2      0      2
  AAK1 WILD-TYPE     87     35     20
D52V8, multiclass
        clus
vv       AAK1 MUTATED AAK1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            0             35
  CLUS_3            2             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAK1 MUTATED        0      3      1
  AAK1 WILD-TYPE     62     48     30
D52V9, multiclass
        clus
vv       AAK1 MUTATED AAK1 WILD-TYPE
  CLUS_1            0             62
  CLUS_2            3             48
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAK1 MUTATED        2      0      2
  AAK1 WILD-TYPE     73     45     22
D52V10, multiclass
        clus
vv       AAK1 MUTATED AAK1 WILD-TYPE
  CLUS_1            2             73
  CLUS_2            0             45
  CLUS_3            2             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = HSPE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HSPE1 MUTATED        1      2      1
  HSPE1 WILD-TYPE     65     63     13
D53V1, multiclass
        clus
vv       HSPE1 MUTATED HSPE1 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             2              63
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPE1 MUTATED        0      0      2      2
  HSPE1 WILD-TYPE     38     29     43     32
D53V2, multiclass
        clus
vv       HSPE1 MUTATED HSPE1 WILD-TYPE
  CLUS_1             0              38
  CLUS_2             0              29
  CLUS_3             2              43
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPE1 MUTATED        0      0      0      1      1
  HSPE1 WILD-TYPE     34     16     11     10     12
D53V3, multiclass
[1] "Remove cluster labels:" "HSPE1 MUTATED"         
clus
  HSPE1 MUTATED HSPE1 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N      TCGA-HV-A5A6 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7646 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7652 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSPE1 MUTATED        0      0      0      0      2      0      0
  HSPE1 WILD-TYPE     12     17     21      9      4     14      6
D53V4, multiclass
[1] "Remove cluster labels:" "HSPE1 MUTATED"         
clus
  HSPE1 MUTATED HSPE1 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N      TCGA-HV-A5A6 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7646 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7652 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" "HSPE1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HSPE1 MUTATED        2      1      1
  HSPE1 WILD-TYPE     69     42     31
D53V5, multiclass
        clus
vv       HSPE1 MUTATED HSPE1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HSPE1 MUTATED        1      2      1
  HSPE1 WILD-TYPE     66     61     15
D53V6, multiclass
        clus
vv       HSPE1 MUTATED HSPE1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPE1 MUTATED        1      0      3      0
  HSPE1 WILD-TYPE     61     36     25     20
D53V7, multiclass
        clus
vv       HSPE1 MUTATED HSPE1 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             0              36
  CLUS_3             3              25
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HSPE1 MUTATED        3      0      1
  HSPE1 WILD-TYPE     86     35     21
D53V8, multiclass
        clus
vv       HSPE1 MUTATED HSPE1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HSPE1 MUTATED        1      2      1
  HSPE1 WILD-TYPE     61     49     30
D53V9, multiclass
        clus
vv       HSPE1 MUTATED HSPE1 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              49
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HSPE1 MUTATED        3      0      1
  HSPE1 WILD-TYPE     72     45     23
D53V10, multiclass
        clus
vv       HSPE1 MUTATED HSPE1 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             0              45
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = TMCC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCC1 MUTATED        4      1      2
  TMCC1 WILD-TYPE     62     64     12
D54V1, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             4              62
  CLUS_2             1              64
  CLUS_3             2              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCC1 MUTATED        2      2      1      2
  TMCC1 WILD-TYPE     36     27     44     32
D54V2, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             2              27
  CLUS_3             1              44
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCC1 MUTATED        1      0      1      1      0
  TMCC1 WILD-TYPE     33     16     10     10     13
D54V3, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMCC1 MUTATED        0      0      1      0      1      0      1
  TMCC1 WILD-TYPE     12     17     20      9      5     14      5
D54V4, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             1               5
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCC1 MUTATED        3      3      1
  TMCC1 WILD-TYPE     68     40     31
D54V5, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             3              40
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCC1 MUTATED        4      3      0
  TMCC1 WILD-TYPE     63     60     16
D54V6, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             4              63
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCC1 MUTATED        1      3      2      1
  TMCC1 WILD-TYPE     61     33     26     19
D54V7, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             3              33
  CLUS_3             2              26
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCC1 MUTATED        5      2      0
  TMCC1 WILD-TYPE     84     33     22
D54V8, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             2              33
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCC1 MUTATED        2      1      3
  TMCC1 WILD-TYPE     60     50     28
D54V9, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              50
  CLUS_3             3              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCC1 MUTATED        4      2      0
  TMCC1 WILD-TYPE     71     43     24
D54V10, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             4              71
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = CFTR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CFTR MUTATED        6      1      0
  CFTR WILD-TYPE     60     64     14
D55V1, multiclass
        clus
vv       CFTR MUTATED CFTR WILD-TYPE
  CLUS_1            6             60
  CLUS_2            1             64
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CFTR MUTATED        3      1      2      1
  CFTR WILD-TYPE     35     28     43     33
D55V2, multiclass
        clus
vv       CFTR MUTATED CFTR WILD-TYPE
  CLUS_1            3             35
  CLUS_2            1             28
  CLUS_3            2             43
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CFTR MUTATED        3      0      1      2      0
  CFTR WILD-TYPE     31     16     10      9     13
D55V3, multiclass
        clus
vv       CFTR MUTATED CFTR WILD-TYPE
  CLUS_1            3             31
  CLUS_2            0             16
  CLUS_3            1             10
  CLUS_4            2              9
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CFTR MUTATED        0      0      3      0      0      1      2
  CFTR WILD-TYPE     12     17     18      9      6     13      4
D55V4, multiclass
        clus
vv       CFTR MUTATED CFTR WILD-TYPE
  CLUS_1            0             12
  CLUS_2            0             17
  CLUS_3            3             18
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            1             13
  CLUS_7            2              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CFTR MUTATED        2      2      3
  CFTR WILD-TYPE     69     41     29
D55V5, multiclass
        clus
vv       CFTR MUTATED CFTR WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             41
  CLUS_3            3             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CFTR MUTATED        2      3      2
  CFTR WILD-TYPE     65     60     14
D55V6, multiclass
        clus
vv       CFTR MUTATED CFTR WILD-TYPE
  CLUS_1            2             65
  CLUS_2            3             60
  CLUS_3            2             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CFTR MUTATED        0      1      3      3
  CFTR WILD-TYPE     62     35     25     17
D55V7, multiclass
        clus
vv       CFTR MUTATED CFTR WILD-TYPE
  CLUS_1            0             62
  CLUS_2            1             35
  CLUS_3            3             25
  CLUS_4            3             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CFTR MUTATED        4      1      2
  CFTR WILD-TYPE     85     34     20
D55V8, multiclass
        clus
vv       CFTR MUTATED CFTR WILD-TYPE
  CLUS_1            4             85
  CLUS_2            1             34
  CLUS_3            2             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CFTR MUTATED        1      5      1
  CFTR WILD-TYPE     61     46     30
D55V9, multiclass
        clus
vv       CFTR MUTATED CFTR WILD-TYPE
  CLUS_1            1             61
  CLUS_2            5             46
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CFTR MUTATED        3      2      2
  CFTR WILD-TYPE     72     43     22
D55V10, multiclass
        clus
vv       CFTR MUTATED CFTR WILD-TYPE
  CLUS_1            3             72
  CLUS_2            2             43
  CLUS_3            2             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = NAA20 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA20 MUTATED        3      0      0
  NAA20 WILD-TYPE     63     65     14
D56V1, multiclass
        clus
vv       NAA20 MUTATED NAA20 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             0              65
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA20 MUTATED        0      1      0      2
  NAA20 WILD-TYPE     38     28     45     32
D56V2, multiclass
        clus
vv       NAA20 MUTATED NAA20 WILD-TYPE
  CLUS_1             0              38
  CLUS_2             1              28
  CLUS_3             0              45
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA20 MUTATED        0      3      0      0      0
  NAA20 WILD-TYPE     34     13     11     11     13
D56V3, multiclass
        clus
vv       NAA20 MUTATED NAA20 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             3              13
  CLUS_3             0              11
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAA20 MUTATED        0      3      0      0      0      0      0
  NAA20 WILD-TYPE     12     14     21      9      6     14      6
D56V4, multiclass
        clus
vv       NAA20 MUTATED NAA20 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             3              14
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             0               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA20 MUTATED        2      1      0
  NAA20 WILD-TYPE     69     42     32
D56V5, multiclass
        clus
vv       NAA20 MUTATED NAA20 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA20 MUTATED        1      2      0
  NAA20 WILD-TYPE     66     61     16
D56V6, multiclass
        clus
vv       NAA20 MUTATED NAA20 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA20 MUTATED        0      1      2      0
  NAA20 WILD-TYPE     62     35     26     20
D56V7, multiclass
        clus
vv       NAA20 MUTATED NAA20 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             1              35
  CLUS_3             2              26
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA20 MUTATED        2      1      0
  NAA20 WILD-TYPE     87     34     22
D56V8, multiclass
        clus
vv       NAA20 MUTATED NAA20 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA20 MUTATED        1      2      0
  NAA20 WILD-TYPE     61     49     31
D56V9, multiclass
        clus
vv       NAA20 MUTATED NAA20 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              49
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA20 MUTATED        2      1      0
  NAA20 WILD-TYPE     73     44     24
D56V10, multiclass
        clus
vv       NAA20 MUTATED NAA20 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = TRPC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPC4 MUTATED        4      1      1
  TRPC4 WILD-TYPE     62     64     13
D57V1, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             4              62
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPC4 MUTATED        2      1      1      2
  TRPC4 WILD-TYPE     36     28     44     32
D57V2, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             1              28
  CLUS_3             1              44
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPC4 MUTATED        2      1      2      0      0
  TRPC4 WILD-TYPE     32     15      9     11     13
D57V3, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             1              15
  CLUS_3             2               9
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRPC4 MUTATED        1      1      0      0      0      1      2
  TRPC4 WILD-TYPE     11     16     21      9      6     13      4
D57V4, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             1              11
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPC4 MUTATED        2      1      3
  TRPC4 WILD-TYPE     69     42     29
D57V5, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             3              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPC4 MUTATED        4      2      0
  TRPC4 WILD-TYPE     63     61     16
D57V6, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             4              63
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPC4 MUTATED        2      2      1      1
  TRPC4 WILD-TYPE     60     34     27     19
D57V7, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              34
  CLUS_3             1              27
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPC4 MUTATED        3      1      2
  TRPC4 WILD-TYPE     86     34     20
D57V8, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             1              34
  CLUS_3             2              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPC4 MUTATED        2      3      1
  TRPC4 WILD-TYPE     60     48     30
D57V9, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             3              48
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPC4 MUTATED        2      3      1
  TRPC4 WILD-TYPE     73     42     23
D57V10, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             3              42
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = CHRNA9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA9 MUTATED        0      3      1
  CHRNA9 WILD-TYPE     66     62     13
D58V1, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              0               66
  CLUS_2              3               62
  CLUS_3              1               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA9 MUTATED        3      0      1      0
  CHRNA9 WILD-TYPE     35     29     44     34
D58V2, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              3               35
  CLUS_2              0               29
  CLUS_3              1               44
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHRNA9 MUTATED        2      0      1      1      0
  CHRNA9 WILD-TYPE     32     16     10     10     13
D58V3, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              0               16
  CLUS_3              1               10
  CLUS_4              1               10
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHRNA9 MUTATED        1      0      1      1      1      0      0
  CHRNA9 WILD-TYPE     11     17     20      8      5     14      6
D58V4, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              1               11
  CLUS_2              0               17
  CLUS_3              1               20
  CLUS_4              1                8
  CLUS_5              1                5
  CLUS_6              0               14
  CLUS_7              0                6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA9 MUTATED        2      2      0
  CHRNA9 WILD-TYPE     69     41     32
D58V5, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               41
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA9 MUTATED        3      1      0
  CHRNA9 WILD-TYPE     64     62     16
D58V6, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              1               62
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA9 MUTATED        1      1      1      1
  CHRNA9 WILD-TYPE     61     35     27     19
D58V7, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              1               35
  CLUS_3              1               27
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA9 MUTATED        3      0      1
  CHRNA9 WILD-TYPE     86     35     21
D58V8, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              0               35
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA9 MUTATED        2      0      2
  CHRNA9 WILD-TYPE     60     51     29
D58V9, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               51
  CLUS_3              2               29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA9 MUTATED        2      1      1
  CHRNA9 WILD-TYPE     73     44     23
D58V10, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              2               73
  CLUS_2              1               44
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = SP140 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP140 MUTATED        3      2      0
  SP140 WILD-TYPE     63     63     14
D59V1, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP140 MUTATED        1      0      3      1
  SP140 WILD-TYPE     37     29     42     33
D59V2, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             0              29
  CLUS_3             3              42
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP140 MUTATED        0      1      1      1      0
  SP140 WILD-TYPE     34     15     10     10     13
D59V3, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SP140 MUTATED        0      1      0      0      0      1      1
  SP140 WILD-TYPE     12     16     21      9      6     13      5
D59V4, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP140 MUTATED        3      1      1
  SP140 WILD-TYPE     68     42     31
D59V5, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              42
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP140 MUTATED        2      3      0
  SP140 WILD-TYPE     65     60     16
D59V6, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP140 MUTATED        3      1      1      0
  SP140 WILD-TYPE     59     35     27     20
D59V7, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP140 MUTATED        5      0      0
  SP140 WILD-TYPE     84     35     22
D59V8, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP140 MUTATED        4      1      0
  SP140 WILD-TYPE     58     50     31
D59V9, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP140 MUTATED        3      2      0
  SP140 WILD-TYPE     72     43     24
D59V10, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = KCNA7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA7 MUTATED        1      3      0
  KCNA7 WILD-TYPE     65     62     14
D60V1, multiclass
        clus
vv       KCNA7 MUTATED KCNA7 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             3              62
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA7 MUTATED        3      2      0      0
  KCNA7 WILD-TYPE     35     27     45     34
D60V2, multiclass
        clus
vv       KCNA7 MUTATED KCNA7 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             2              27
  CLUS_3             0              45
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNA7 MUTATED        3      0      2      0      0
  KCNA7 WILD-TYPE     31     16      9     11     13
D60V3, multiclass
        clus
vv       KCNA7 MUTATED KCNA7 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             0              16
  CLUS_3             2               9
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCNA7 MUTATED        1      0      2      1      0      0      1
  KCNA7 WILD-TYPE     11     17     19      8      6     14      5
D60V4, multiclass
        clus
vv       KCNA7 MUTATED KCNA7 WILD-TYPE
  CLUS_1             1              11
  CLUS_2             0              17
  CLUS_3             2              19
  CLUS_4             1               8
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA7 MUTATED        1      4      0
  KCNA7 WILD-TYPE     70     39     32
D60V5, multiclass
        clus
vv       KCNA7 MUTATED KCNA7 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              39
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA7 MUTATED        5      0      0
  KCNA7 WILD-TYPE     62     63     16
D60V6, multiclass
        clus
vv       KCNA7 MUTATED KCNA7 WILD-TYPE
  CLUS_1             5              62
  CLUS_2             0              63
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA7 MUTATED        1      4      0      0
  KCNA7 WILD-TYPE     61     32     28     20
D60V7, multiclass
        clus
vv       KCNA7 MUTATED KCNA7 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             4              32
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA7 MUTATED        2      3      0
  KCNA7 WILD-TYPE     87     32     22
D60V8, multiclass
        clus
vv       KCNA7 MUTATED KCNA7 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3              32
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA7 MUTATED        2      2      1
  KCNA7 WILD-TYPE     60     49     30
D60V9, multiclass
        clus
vv       KCNA7 MUTATED KCNA7 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              49
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA7 MUTATED        1      4      0
  KCNA7 WILD-TYPE     74     41     24
D60V10, multiclass
        clus
vv       KCNA7 MUTATED KCNA7 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             4              41
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = AQP7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AQP7 MUTATED        2      5      0
  AQP7 WILD-TYPE     64     60     14
D61V1, multiclass
        clus
vv       AQP7 MUTATED AQP7 WILD-TYPE
  CLUS_1            2             64
  CLUS_2            5             60
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AQP7 MUTATED        2      0      5      0
  AQP7 WILD-TYPE     36     29     40     34
D61V2, multiclass
        clus
vv       AQP7 MUTATED AQP7 WILD-TYPE
  CLUS_1            2             36
  CLUS_2            0             29
  CLUS_3            5             40
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AQP7 MUTATED        2      0      1      0      3
  AQP7 WILD-TYPE     32     16     10     11     10
D61V3, multiclass
        clus
vv       AQP7 MUTATED AQP7 WILD-TYPE
  CLUS_1            2             32
  CLUS_2            0             16
  CLUS_3            1             10
  CLUS_4            0             11
  CLUS_5            3             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AQP7 MUTATED        1      0      1      0      1      2      1
  AQP7 WILD-TYPE     11     17     20      9      5     12      5
D61V4, multiclass
        clus
vv       AQP7 MUTATED AQP7 WILD-TYPE
  CLUS_1            1             11
  CLUS_2            0             17
  CLUS_3            1             20
  CLUS_4            0              9
  CLUS_5            1              5
  CLUS_6            2             12
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AQP7 MUTATED        4      1      2
  AQP7 WILD-TYPE     67     42     30
D61V5, multiclass
        clus
vv       AQP7 MUTATED AQP7 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            1             42
  CLUS_3            2             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AQP7 MUTATED        3      4      0
  AQP7 WILD-TYPE     64     59     16
D61V6, multiclass
        clus
vv       AQP7 MUTATED AQP7 WILD-TYPE
  CLUS_1            3             64
  CLUS_2            4             59
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AQP7 MUTATED        4      1      0      2
  AQP7 WILD-TYPE     58     35     28     18
D61V7, multiclass
        clus
vv       AQP7 MUTATED AQP7 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             35
  CLUS_3            0             28
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AQP7 MUTATED        6      0      1
  AQP7 WILD-TYPE     83     35     21
D61V8, multiclass
        clus
vv       AQP7 MUTATED AQP7 WILD-TYPE
  CLUS_1            6             83
  CLUS_2            0             35
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AQP7 MUTATED        5      1      1
  AQP7 WILD-TYPE     57     50     30
D61V9, multiclass
        clus
vv       AQP7 MUTATED AQP7 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             50
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AQP7 MUTATED        5      1      1
  AQP7 WILD-TYPE     70     44     23
D61V10, multiclass
        clus
vv       AQP7 MUTATED AQP7 WILD-TYPE
  CLUS_1            5             70
  CLUS_2            1             44
  CLUS_3            1             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = SKA3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SKA3 MUTATED        1      3      2
  SKA3 WILD-TYPE     65     62     12
D62V1, multiclass
        clus
vv       SKA3 MUTATED SKA3 WILD-TYPE
  CLUS_1            1             65
  CLUS_2            3             62
  CLUS_3            2             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKA3 MUTATED        3      1      2      0
  SKA3 WILD-TYPE     35     28     43     34
D62V2, multiclass
        clus
vv       SKA3 MUTATED SKA3 WILD-TYPE
  CLUS_1            3             35
  CLUS_2            1             28
  CLUS_3            2             43
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SKA3 MUTATED        1      1      2      0      1
  SKA3 WILD-TYPE     33     15      9     11     12
D62V3, multiclass
        clus
vv       SKA3 MUTATED SKA3 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            1             15
  CLUS_3            2              9
  CLUS_4            0             11
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SKA3 MUTATED        1      1      0      1      1      0      1
  SKA3 WILD-TYPE     11     16     21      8      5     14      5
D62V4, multiclass
        clus
vv       SKA3 MUTATED SKA3 WILD-TYPE
  CLUS_1            1             11
  CLUS_2            1             16
  CLUS_3            0             21
  CLUS_4            1              8
  CLUS_5            1              5
  CLUS_6            0             14
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SKA3 MUTATED        2      4      0
  SKA3 WILD-TYPE     69     39     32
D62V5, multiclass
        clus
vv       SKA3 MUTATED SKA3 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            4             39
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SKA3 MUTATED        4      2      0
  SKA3 WILD-TYPE     63     61     16
D62V6, multiclass
        clus
vv       SKA3 MUTATED SKA3 WILD-TYPE
  CLUS_1            4             63
  CLUS_2            2             61
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKA3 MUTATED        3      3      0      0
  SKA3 WILD-TYPE     59     33     28     20
D62V7, multiclass
        clus
vv       SKA3 MUTATED SKA3 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            3             33
  CLUS_3            0             28
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SKA3 MUTATED        5      1      0
  SKA3 WILD-TYPE     84     34     22
D62V8, multiclass
        clus
vv       SKA3 MUTATED SKA3 WILD-TYPE
  CLUS_1            5             84
  CLUS_2            1             34
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SKA3 MUTATED        4      1      1
  SKA3 WILD-TYPE     58     50     30
D62V9, multiclass
        clus
vv       SKA3 MUTATED SKA3 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             50
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SKA3 MUTATED        2      4      0
  SKA3 WILD-TYPE     73     41     24
D62V10, multiclass
        clus
vv       SKA3 MUTATED SKA3 WILD-TYPE
  CLUS_1            2             73
  CLUS_2            4             41
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DAAM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAAM1 MUTATED        2      3      1
  DAAM1 WILD-TYPE     64     62     13
D63V1, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             3              62
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAAM1 MUTATED        3      1      1      1
  DAAM1 WILD-TYPE     35     28     44     33
D63V2, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             1              28
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAAM1 MUTATED        1      0      1      0      2
  DAAM1 WILD-TYPE     33     16     10     11     11
D63V3, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DAAM1 MUTATED        1      0      0      0      0      2      1
  DAAM1 WILD-TYPE     11     17     21      9      6     12      5
D63V4, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             1              11
  CLUS_2             0              17
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             2              12
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAAM1 MUTATED        4      2      0
  DAAM1 WILD-TYPE     67     41     32
D63V5, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              41
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAAM1 MUTATED        3      3      0
  DAAM1 WILD-TYPE     64     60     16
D63V6, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAAM1 MUTATED        2      2      2      0
  DAAM1 WILD-TYPE     60     34     26     20
D63V7, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              34
  CLUS_3             2              26
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAAM1 MUTATED        5      1      0
  DAAM1 WILD-TYPE     84     34     22
D63V8, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAAM1 MUTATED        3      2      0
  DAAM1 WILD-TYPE     59     49     31
D63V9, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             2              49
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAAM1 MUTATED        0      5      0
  DAAM1 WILD-TYPE     75     40     24
D63V10, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             5              40
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = MSH2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH2 MUTATED        3      1      0
  MSH2 WILD-TYPE     63     64     14
D64V1, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            3             63
  CLUS_2            1             64
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH2 MUTATED        1      1      0      2
  MSH2 WILD-TYPE     37     28     45     32
D64V2, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            1             37
  CLUS_2            1             28
  CLUS_3            0             45
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSH2 MUTATED        0      0      1      1      2
  MSH2 WILD-TYPE     34     16     10     10     11
D64V3, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            0             16
  CLUS_3            1             10
  CLUS_4            1             10
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MSH2 MUTATED        0      1      0      0      0      2      1
  MSH2 WILD-TYPE     12     16     21      9      6     12      5
D64V4, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            0             12
  CLUS_2            1             16
  CLUS_3            0             21
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            2             12
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH2 MUTATED        1      1      2
  MSH2 WILD-TYPE     70     42     30
D64V5, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            1             42
  CLUS_3            2             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH2 MUTATED        2      1      1
  MSH2 WILD-TYPE     65     62     15
D64V6, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            1             62
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH2 MUTATED        1      1      2      0
  MSH2 WILD-TYPE     61     35     26     20
D64V7, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             35
  CLUS_3            2             26
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH2 MUTATED        2      1      1
  MSH2 WILD-TYPE     87     34     21
D64V8, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            1             34
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH2 MUTATED        2      2      0
  MSH2 WILD-TYPE     60     49     31
D64V9, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            2             49
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH2 MUTATED        0      2      2
  MSH2 WILD-TYPE     75     43     22
D64V10, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            0             75
  CLUS_2            2             43
  CLUS_3            2             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = NUP210L MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NUP210L MUTATED        4      0      1
  NUP210L WILD-TYPE     62     65     13
D65V1, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               4                62
  CLUS_2               0                65
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP210L MUTATED        1      1      1      2
  NUP210L WILD-TYPE     37     28     44     32
D65V2, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               1                37
  CLUS_2               1                28
  CLUS_3               1                44
  CLUS_4               2                32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUP210L MUTATED        0      3      2      0      0
  NUP210L WILD-TYPE     34     13      9     11     13
D65V3, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               0                34
  CLUS_2               3                13
  CLUS_3               2                 9
  CLUS_4               0                11
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUP210L MUTATED        0      3      0      1      0      0      1
  NUP210L WILD-TYPE     12     14     21      8      6     14      5
D65V4, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               0                12
  CLUS_2               3                14
  CLUS_3               0                21
  CLUS_4               1                 8
  CLUS_5               0                 6
  CLUS_6               0                14
  CLUS_7               1                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NUP210L MUTATED        3      2      0
  NUP210L WILD-TYPE     68     41     32
D65V5, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               3                68
  CLUS_2               2                41
  CLUS_3               0                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NUP210L MUTATED        2      3      0
  NUP210L WILD-TYPE     65     60     16
D65V6, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               2                65
  CLUS_2               3                60
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP210L MUTATED        1      2      2      0
  NUP210L WILD-TYPE     61     34     26     20
D65V7, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               1                61
  CLUS_2               2                34
  CLUS_3               2                26
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NUP210L MUTATED        4      1      0
  NUP210L WILD-TYPE     85     34     22
D65V8, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               4                85
  CLUS_2               1                34
  CLUS_3               0                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NUP210L MUTATED        3      2      0
  NUP210L WILD-TYPE     59     49     31
D65V9, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               3                59
  CLUS_2               2                49
  CLUS_3               0                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NUP210L MUTATED        3      2      0
  NUP210L WILD-TYPE     72     43     24
D65V10, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               3                72
  CLUS_2               2                43
  CLUS_3               0                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = GPR98 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR98 MUTATED        7      1      0
  GPR98 WILD-TYPE     59     64     14
D66V1, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             7              59
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR98 MUTATED        2      2      1      3
  GPR98 WILD-TYPE     36     27     44     31
D66V2, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             2              27
  CLUS_3             1              44
  CLUS_4             3              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR98 MUTATED        1      3      1      1      1
  GPR98 WILD-TYPE     33     13     10     10     12
D66V3, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             3              13
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR98 MUTATED        0      4      0      0      1      0      2
  GPR98 WILD-TYPE     12     13     21      9      5     14      4
D66V4, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             4              13
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             1               5
  CLUS_6             0              14
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR98 MUTATED        4      3      1
  GPR98 WILD-TYPE     67     40     31
D66V5, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             3              40
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR98 MUTATED        5      2      1
  GPR98 WILD-TYPE     62     61     15
D66V6, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             5              62
  CLUS_2             2              61
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR98 MUTATED        1      3      4      0
  GPR98 WILD-TYPE     61     33     24     20
D66V7, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             3              33
  CLUS_3             4              24
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR98 MUTATED        5      2      1
  GPR98 WILD-TYPE     84     33     21
D66V8, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             2              33
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR98 MUTATED        3      4      1
  GPR98 WILD-TYPE     59     47     30
D66V9, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             4              47
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR98 MUTATED        2      5      1
  GPR98 WILD-TYPE     73     40     23
D66V10, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             5              40
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = CD2AP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD2AP MUTATED        1      1      1
  CD2AP WILD-TYPE     65     64     13
D67V1, multiclass
        clus
vv       CD2AP MUTATED CD2AP WILD-TYPE
  CLUS_1             1              65
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD2AP MUTATED        2      0      1      0
  CD2AP WILD-TYPE     36     29     44     34
D67V2, multiclass
        clus
vv       CD2AP MUTATED CD2AP WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD2AP MUTATED        0      0      1      1      1
  CD2AP WILD-TYPE     34     16     10     10     12
D67V3, multiclass
        clus
vv       CD2AP MUTATED CD2AP WILD-TYPE
  CLUS_1             0              34
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD2AP MUTATED        0      0      1      0      0      1      1
  CD2AP WILD-TYPE     12     17     20      9      6     13      5
D67V4, multiclass
        clus
vv       CD2AP MUTATED CD2AP WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD2AP MUTATED        2      1      0
  CD2AP WILD-TYPE     69     42     32
D67V5, multiclass
        clus
vv       CD2AP MUTATED CD2AP WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD2AP MUTATED        1      2      0
  CD2AP WILD-TYPE     66     61     16
D67V6, multiclass
        clus
vv       CD2AP MUTATED CD2AP WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD2AP MUTATED        1      1      1      0
  CD2AP WILD-TYPE     61     35     27     20
D67V7, multiclass
        clus
vv       CD2AP MUTATED CD2AP WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD2AP MUTATED        3      0      0
  CD2AP WILD-TYPE     86     35     22
D67V8, multiclass
        clus
vv       CD2AP MUTATED CD2AP WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD2AP MUTATED        2      0      0
  CD2AP WILD-TYPE     60     51     31
D67V9, multiclass
[1] "Remove cluster labels:" "CD2AP MUTATED"         
clus
  CD2AP MUTATED CD2AP WILD-TYPE 
              2             142 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-2J-AABU      TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9I7 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-F2-A44H      TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A4P5 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-FB-A4P6      TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-FB-AAPS      TCGA-FB-AAPU      TCGA-FB-AAPY      TCGA-FB-AAPZ 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-FB-AAQ0      TCGA-FB-AAQ1      TCGA-FB-AAQ2      TCGA-FB-AAQ3 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-H6-8124      TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HV-A5A5      TCGA-HV-A5A6      TCGA-HV-A7OL      TCGA-HV-AA8V 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HV-AA8X      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8317      TCGA-HZ-8519      TCGA-HZ-8636 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HZ-8637      TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A49I 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-HZ-A77O      TCGA-HZ-A77P 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HZ-A77Q      TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-AAUT      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-S4-A8RM      TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD2AP MUTATED        1      1      0
  CD2AP WILD-TYPE     74     44     24
D67V10, multiclass
[1] "Remove cluster labels:" "CD2AP MUTATED"         
clus
  CD2AP MUTATED CD2AP WILD-TYPE 
              2             142 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-2J-AABU      TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9I7 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-F2-A44H      TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A4P5 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-FB-A4P6      TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-FB-AAPS      TCGA-FB-AAPU      TCGA-FB-AAPY      TCGA-FB-AAPZ 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-FB-AAQ0      TCGA-FB-AAQ1      TCGA-FB-AAQ2      TCGA-FB-AAQ3 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-H6-8124      TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HV-A5A5      TCGA-HV-A5A6      TCGA-HV-A7OL      TCGA-HV-AA8V 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HV-AA8X      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8317      TCGA-HZ-8519      TCGA-HZ-8636 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HZ-8637      TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A49I 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-HZ-A77O      TCGA-HZ-A77P 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-HZ-A77Q      TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-IB-AAUT      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-S4-A8RM      TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 
     TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CD2AP WILD-TYPE" "CD2AP WILD-TYPE" 

Clustering(68) Variable = RREB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        6      3      0
  RREB1 WILD-TYPE     60     62     14
D68V1, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             6              60
  CLUS_2             3              62
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        3      1      2      3
  RREB1 WILD-TYPE     35     28     43     31
D68V2, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             1              28
  CLUS_3             2              43
  CLUS_4             3              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RREB1 MUTATED        3      0      1      1      0
  RREB1 WILD-TYPE     31     16     10     10     13
D68V3, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RREB1 MUTATED        1      0      1      0      0      1      2
  RREB1 WILD-TYPE     11     17     20      9      6     13      4
D68V4, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             1              11
  CLUS_2             0              17
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        3      3      3
  RREB1 WILD-TYPE     68     40     29
D68V5, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             3              40
  CLUS_3             3              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        5      3      1
  RREB1 WILD-TYPE     62     60     15
D68V6, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             5              62
  CLUS_2             3              60
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        1      3      3      2
  RREB1 WILD-TYPE     61     33     25     18
D68V7, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             3              33
  CLUS_3             3              25
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        6      2      1
  RREB1 WILD-TYPE     83     33     21
D68V8, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             6              83
  CLUS_2             2              33
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        2      4      3
  RREB1 WILD-TYPE     60     47     28
D68V9, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             4              47
  CLUS_3             3              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        4      3      2
  RREB1 WILD-TYPE     71     42     22
D68V10, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             4              71
  CLUS_2             3              42
  CLUS_3             2              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = KIAA0586 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0586 MUTATED        3      2      1
  KIAA0586 WILD-TYPE     63     63     13
D69V1, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                3                 63
  CLUS_2                2                 63
  CLUS_3                1                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0586 MUTATED        3      2      0      1
  KIAA0586 WILD-TYPE     35     27     45     33
D69V2, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                3                 35
  CLUS_2                2                 27
  CLUS_3                0                 45
  CLUS_4                1                 33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0586 MUTATED        2      1      1      1      1
  KIAA0586 WILD-TYPE     32     15     10     10     12
D69V3, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                2                 32
  CLUS_2                1                 15
  CLUS_3                1                 10
  CLUS_4                1                 10
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0586 MUTATED        0      1      2      0      0      2      1
  KIAA0586 WILD-TYPE     12     16     19      9      6     12      5
D69V4, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                1                 16
  CLUS_3                2                 19
  CLUS_4                0                  9
  CLUS_5                0                  6
  CLUS_6                2                 12
  CLUS_7                1                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0586 MUTATED        2      3      1
  KIAA0586 WILD-TYPE     69     40     31
D69V5, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                3                 40
  CLUS_3                1                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0586 MUTATED        5      1      0
  KIAA0586 WILD-TYPE     62     62     16
D69V6, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                5                 62
  CLUS_2                1                 62
  CLUS_3                0                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0586 MUTATED        3      2      1      0
  KIAA0586 WILD-TYPE     59     34     27     20
D69V7, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                3                 59
  CLUS_2                2                 34
  CLUS_3                1                 27
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0586 MUTATED        4      2      0
  KIAA0586 WILD-TYPE     85     33     22
D69V8, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                4                 85
  CLUS_2                2                 33
  CLUS_3                0                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0586 MUTATED        4      2      0
  KIAA0586 WILD-TYPE     58     49     31
D69V9, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                4                 58
  CLUS_2                2                 49
  CLUS_3                0                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0586 MUTATED        0      5      1
  KIAA0586 WILD-TYPE     75     40     23
D69V10, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                0                 75
  CLUS_2                5                 40
  CLUS_3                1                 23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = GNAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED        8      0      1
  GNAS WILD-TYPE     58     65     13
D70V1, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            8             58
  CLUS_2            0             65
  CLUS_3            1             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED        3      2      1      3
  GNAS WILD-TYPE     35     27     44     31
D70V2, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            3             35
  CLUS_2            2             27
  CLUS_3            1             44
  CLUS_4            3             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAS MUTATED        1      2      2      0      0
  GNAS WILD-TYPE     33     14      9     11     13
D70V3, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            1             33
  CLUS_2            2             14
  CLUS_3            2              9
  CLUS_4            0             11
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GNAS MUTATED        0      1      1      1      0      1      1
  GNAS WILD-TYPE     12     16     20      8      6     13      5
D70V4, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            0             12
  CLUS_2            1             16
  CLUS_3            1             20
  CLUS_4            1              8
  CLUS_5            0              6
  CLUS_6            1             13
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED        5      3      1
  GNAS WILD-TYPE     66     40     31
D70V5, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            5             66
  CLUS_2            3             40
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED        5      3      1
  GNAS WILD-TYPE     62     60     15
D70V6, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            5             62
  CLUS_2            3             60
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED        5      2      1      1
  GNAS WILD-TYPE     57     34     27     19
D70V7, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            5             57
  CLUS_2            2             34
  CLUS_3            1             27
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED        7      2      0
  GNAS WILD-TYPE     82     33     22
D70V8, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            7             82
  CLUS_2            2             33
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED        5      3      1
  GNAS WILD-TYPE     57     48     30
D70V9, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            5             57
  CLUS_2            3             48
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED        6      3      0
  GNAS WILD-TYPE     69     42     24
D70V10, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            6             69
  CLUS_2            3             42
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = FAR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAR1 MUTATED        3      1      0
  FAR1 WILD-TYPE     63     64     14
D71V1, multiclass
        clus
vv       FAR1 MUTATED FAR1 WILD-TYPE
  CLUS_1            3             63
  CLUS_2            1             64
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAR1 MUTATED        2      0      0      2
  FAR1 WILD-TYPE     36     29     45     32
D71V2, multiclass
        clus
vv       FAR1 MUTATED FAR1 WILD-TYPE
  CLUS_1            2             36
  CLUS_2            0             29
  CLUS_3            0             45
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAR1 MUTATED        0      2      1      0      0
  FAR1 WILD-TYPE     34     14     10     11     13
D71V3, multiclass
        clus
vv       FAR1 MUTATED FAR1 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            2             14
  CLUS_3            1             10
  CLUS_4            0             11
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAR1 MUTATED        0      2      0      0      0      0      1
  FAR1 WILD-TYPE     12     15     21      9      6     14      5
D71V4, multiclass
        clus
vv       FAR1 MUTATED FAR1 WILD-TYPE
  CLUS_1            0             12
  CLUS_2            2             15
  CLUS_3            0             21
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            0             14
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAR1 MUTATED        3      1      0
  FAR1 WILD-TYPE     68     42     32
D71V5, multiclass
        clus
vv       FAR1 MUTATED FAR1 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            1             42
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAR1 MUTATED        1      3      0
  FAR1 WILD-TYPE     66     60     16
D71V6, multiclass
        clus
vv       FAR1 MUTATED FAR1 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            3             60
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAR1 MUTATED        1      1      2      0
  FAR1 WILD-TYPE     61     35     26     20
D71V7, multiclass
        clus
vv       FAR1 MUTATED FAR1 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             35
  CLUS_3            2             26
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAR1 MUTATED        4      0      0
  FAR1 WILD-TYPE     85     35     22
D71V8, multiclass
        clus
vv       FAR1 MUTATED FAR1 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            0             35
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAR1 MUTATED        3      1      0
  FAR1 WILD-TYPE     59     50     31
D71V9, multiclass
        clus
vv       FAR1 MUTATED FAR1 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             50
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAR1 MUTATED        3      1      0
  FAR1 WILD-TYPE     72     44     24
D71V10, multiclass
        clus
vv       FAR1 MUTATED FAR1 WILD-TYPE
  CLUS_1            3             72
  CLUS_2            1             44
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = OR2T4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2T4 MUTATED        3      2      1
  OR2T4 WILD-TYPE     63     63     13
D72V1, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             2              63
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T4 MUTATED        1      2      3      0
  OR2T4 WILD-TYPE     37     27     42     34
D72V2, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             2              27
  CLUS_3             3              42
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2T4 MUTATED        0      1      3      0      0
  OR2T4 WILD-TYPE     34     15      8     11     13
D72V3, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             1              15
  CLUS_3             3               8
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2T4 MUTATED        0      1      0      2      0      0      1
  OR2T4 WILD-TYPE     12     16     21      7      6     14      5
D72V4, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             2               7
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2T4 MUTATED        3      1      2
  OR2T4 WILD-TYPE     68     42     30
D72V5, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              42
  CLUS_3             2              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2T4 MUTATED        3      3      0
  OR2T4 WILD-TYPE     64     60     16
D72V6, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T4 MUTATED        3      3      0      0
  OR2T4 WILD-TYPE     59     33     28     20
D72V7, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             3              33
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2T4 MUTATED        4      2      0
  OR2T4 WILD-TYPE     85     33     22
D72V8, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             2              33
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2T4 MUTATED        4      1      1
  OR2T4 WILD-TYPE     58     50     30
D72V9, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              50
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2T4 MUTATED        3      3      0
  OR2T4 WILD-TYPE     72     42     24
D72V10, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             3              42
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = GPR50 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        2      2      1
  GPR50 WILD-TYPE     64     63     13
D73V1, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             2              63
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR50 MUTATED        1      2      1      1
  GPR50 WILD-TYPE     37     27     44     33
D73V2, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             2              27
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR50 MUTATED        1      0      0      0      2
  GPR50 WILD-TYPE     33     16     11     11     11
D73V3, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             0              11
  CLUS_4             0              11
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR50 MUTATED        0      1      0      0      0      1      1
  GPR50 WILD-TYPE     12     16     21      9      6     13      5
D73V4, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        2      1      2
  GPR50 WILD-TYPE     69     42     30
D73V5, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             2              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        2      2      1
  GPR50 WILD-TYPE     65     61     15
D73V6, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             2              61
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR50 MUTATED        0      2      3      0
  GPR50 WILD-TYPE     62     34     25     20
D73V7, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             2              34
  CLUS_3             3              25
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        2      2      1
  GPR50 WILD-TYPE     87     33     21
D73V8, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2              33
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        0      2      2
  GPR50 WILD-TYPE     62     49     29
D73V9, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             2              49
  CLUS_3             2              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        1      2      1
  GPR50 WILD-TYPE     74     43     23
D73V10, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2              43
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = TAX1BP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAX1BP1 MUTATED        5      0      0
  TAX1BP1 WILD-TYPE     61     65     14
D74V1, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               5                61
  CLUS_2               0                65
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAX1BP1 MUTATED        2      1      0      2
  TAX1BP1 WILD-TYPE     36     28     45     32
D74V2, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               2                36
  CLUS_2               1                28
  CLUS_3               0                45
  CLUS_4               2                32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAX1BP1 MUTATED        1      1      1      1      0
  TAX1BP1 WILD-TYPE     33     15     10     10     13
D74V3, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               1                33
  CLUS_2               1                15
  CLUS_3               1                10
  CLUS_4               1                10
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAX1BP1 MUTATED        0      1      0      0      0      2      1
  TAX1BP1 WILD-TYPE     12     16     21      9      6     12      5
D74V4, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               0                12
  CLUS_2               1                16
  CLUS_3               0                21
  CLUS_4               0                 9
  CLUS_5               0                 6
  CLUS_6               2                12
  CLUS_7               1                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAX1BP1 MUTATED        2      1      2
  TAX1BP1 WILD-TYPE     69     42     30
D74V5, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                42
  CLUS_3               2                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAX1BP1 MUTATED        3      1      1
  TAX1BP1 WILD-TYPE     64     62     15
D74V6, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               3                64
  CLUS_2               1                62
  CLUS_3               1                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAX1BP1 MUTATED        0      1      3      1
  TAX1BP1 WILD-TYPE     62     35     25     19
D74V7, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               0                62
  CLUS_2               1                35
  CLUS_3               3                25
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAX1BP1 MUTATED        4      1      0
  TAX1BP1 WILD-TYPE     85     34     22
D74V8, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               1                34
  CLUS_3               0                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAX1BP1 MUTATED        2      3      0
  TAX1BP1 WILD-TYPE     60     48     31
D74V9, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               3                48
  CLUS_3               0                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAX1BP1 MUTATED        2      2      1
  TAX1BP1 WILD-TYPE     73     43     23
D74V10, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               2                73
  CLUS_2               2                43
  CLUS_3               1                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = CCDC33 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC33 MUTATED        1      1      1
  CCDC33 WILD-TYPE     65     64     13
D75V1, multiclass
        clus
vv       CCDC33 MUTATED CCDC33 WILD-TYPE
  CLUS_1              1               65
  CLUS_2              1               64
  CLUS_3              1               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC33 MUTATED        2      0      1      0
  CCDC33 WILD-TYPE     36     29     44     34
D75V2, multiclass
        clus
vv       CCDC33 MUTATED CCDC33 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              0               29
  CLUS_3              1               44
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC33 MUTATED        1      0      0      0      1
  CCDC33 WILD-TYPE     33     16     11     11     12
D75V3, multiclass
[1] "Remove cluster labels:" "CCDC33 MUTATED"        
clus
  CCDC33 MUTATED CCDC33 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-A44G 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A545 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N       TCGA-HV-A5A6 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8315       TCGA-HZ-8519 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7646 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7652 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC33 MUTATED        0      0      0      0      0      1      1
  CCDC33 WILD-TYPE     12     17     21      9      6     13      5
D75V4, multiclass
[1] "Remove cluster labels:" "CCDC33 MUTATED"        
clus
  CCDC33 MUTATED CCDC33 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-A44G 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A545 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N       TCGA-HV-A5A6 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8315       TCGA-HZ-8519 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7646 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7652 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC33 MUTATED        3      0      0
  CCDC33 WILD-TYPE     68     43     32
D75V5, multiclass
        clus
vv       CCDC33 MUTATED CCDC33 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               43
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC33 MUTATED        1      2      0
  CCDC33 WILD-TYPE     66     61     16
D75V6, multiclass
        clus
vv       CCDC33 MUTATED CCDC33 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              2               61
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC33 MUTATED        1      0      2      0
  CCDC33 WILD-TYPE     61     36     26     20
D75V7, multiclass
        clus
vv       CCDC33 MUTATED CCDC33 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              0               36
  CLUS_3              2               26
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC33 MUTATED        3      0      0
  CCDC33 WILD-TYPE     86     35     22
D75V8, multiclass
        clus
vv       CCDC33 MUTATED CCDC33 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC33 MUTATED        1      1      0
  CCDC33 WILD-TYPE     61     50     31
D75V9, multiclass
[1] "Remove cluster labels:" "CCDC33 MUTATED"        
clus
  CCDC33 MUTATED CCDC33 WILD-TYPE 
               2              142 
      TCGA-2J-AAB1       TCGA-2J-AAB4       TCGA-2J-AAB6       TCGA-2J-AAB8 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-2J-AAB9       TCGA-2J-AABA       TCGA-2J-AABE       TCGA-2J-AABF 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABR 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-2J-AABU       TCGA-2L-AAQA       TCGA-2L-AAQE       TCGA-2L-AAQI 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-2L-AAQJ       TCGA-2L-AAQL       TCGA-3A-A9I5       TCGA-3A-A9I7 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-3A-A9I9       TCGA-3A-A9IB       TCGA-3A-A9IC       TCGA-3A-A9IH 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3A-A9J0 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-3E-AAAY       TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A44H 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-F2-A7TX       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-AAPS 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-FB-AAPU       TCGA-FB-AAPY       TCGA-FB-AAPZ       TCGA-FB-AAQ0 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ2       TCGA-FB-AAQ3       TCGA-H6-8124 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-HV-A5A3       TCGA-HV-A5A4       TCGA-HV-A5A5 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HV-A5A6       TCGA-HV-A7OL       TCGA-HV-AA8V       TCGA-HV-AA8X 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8315       TCGA-HZ-8317 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-8636       TCGA-HZ-8637       TCGA-HZ-A49G 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-A49H       TCGA-HZ-A49I       TCGA-HZ-A4BH       TCGA-HZ-A4BK 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-A77O       TCGA-HZ-A77P       TCGA-HZ-A77Q       TCGA-HZ-A8P0 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-A8P1       TCGA-HZ-A9TJ       TCGA-IB-7644       TCGA-IB-7645 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A6UG       TCGA-IB-A7LX 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-AAUP       TCGA-IB-AAUQ       TCGA-IB-AAUR       TCGA-IB-AAUS 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-AAUT       TCGA-IB-AAUU       TCGA-LB-A7SX       TCGA-LB-A8F3 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-M8-A5N4       TCGA-OE-A75W       TCGA-PZ-A5RE 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-Q3-A5QY       TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-S4-A8RM       TCGA-S4-A8RO       TCGA-S4-A8RP       TCGA-US-A774 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-XD-AAUG       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-XN-A8T3       TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-YY-A8LH       TCGA-Z5-AAPL 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC33 MUTATED        1      1      0
  CCDC33 WILD-TYPE     74     44     24
D75V10, multiclass
[1] "Remove cluster labels:" "CCDC33 MUTATED"        
clus
  CCDC33 MUTATED CCDC33 WILD-TYPE 
               2              142 
      TCGA-2J-AAB1       TCGA-2J-AAB4       TCGA-2J-AAB6       TCGA-2J-AAB8 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-2J-AAB9       TCGA-2J-AABA       TCGA-2J-AABE       TCGA-2J-AABF 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABR 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-2J-AABU       TCGA-2L-AAQA       TCGA-2L-AAQE       TCGA-2L-AAQI 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-2L-AAQJ       TCGA-2L-AAQL       TCGA-3A-A9I5       TCGA-3A-A9I7 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-3A-A9I9       TCGA-3A-A9IB       TCGA-3A-A9IC       TCGA-3A-A9IH 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3A-A9J0 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-3E-AAAY       TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A44H 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-F2-A7TX       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-AAPS 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-FB-AAPU       TCGA-FB-AAPY       TCGA-FB-AAPZ       TCGA-FB-AAQ0 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ2       TCGA-FB-AAQ3       TCGA-H6-8124 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-HV-A5A3       TCGA-HV-A5A4       TCGA-HV-A5A5 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HV-A5A6       TCGA-HV-A7OL       TCGA-HV-AA8V       TCGA-HV-AA8X 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8315       TCGA-HZ-8317 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-8636       TCGA-HZ-8637       TCGA-HZ-A49G 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-A49H       TCGA-HZ-A49I       TCGA-HZ-A4BH       TCGA-HZ-A4BK 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-A77O       TCGA-HZ-A77P       TCGA-HZ-A77Q       TCGA-HZ-A8P0 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-HZ-A8P1       TCGA-HZ-A9TJ       TCGA-IB-7644       TCGA-IB-7645 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A6UG       TCGA-IB-A7LX 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-AAUP       TCGA-IB-AAUQ       TCGA-IB-AAUR       TCGA-IB-AAUS 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-IB-AAUT       TCGA-IB-AAUU       TCGA-LB-A7SX       TCGA-LB-A8F3 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-M8-A5N4       TCGA-OE-A75W       TCGA-PZ-A5RE 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-Q3-A5QY       TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-S4-A8RM       TCGA-S4-A8RO       TCGA-S4-A8RP       TCGA-US-A774 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-XD-AAUG       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-XN-A8T3       TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 
      TCGA-YY-A8LH       TCGA-Z5-AAPL 
"CCDC33 WILD-TYPE" "CCDC33 WILD-TYPE" 

Clustering(76) Variable = JAK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK2 MUTATED        4      0      0
  JAK2 WILD-TYPE     62     65     14
D76V1, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            4             62
  CLUS_2            0             65
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK2 MUTATED        1      1      0      2
  JAK2 WILD-TYPE     37     28     45     32
D76V2, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            1             37
  CLUS_2            1             28
  CLUS_3            0             45
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JAK2 MUTATED        0      2      1      1      0
  JAK2 WILD-TYPE     34     14     10     10     13
D76V3, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            2             14
  CLUS_3            1             10
  CLUS_4            1             10
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  JAK2 MUTATED        0      2      0      0      0      1      1
  JAK2 WILD-TYPE     12     15     21      9      6     13      5
D76V4, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            0             12
  CLUS_2            2             15
  CLUS_3            0             21
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            1             13
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK2 MUTATED        2      1      1
  JAK2 WILD-TYPE     69     42     31
D76V5, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             42
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK2 MUTATED        2      2      0
  JAK2 WILD-TYPE     65     61     16
D76V6, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            2             61
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK2 MUTATED        0      1      3      0
  JAK2 WILD-TYPE     62     35     25     20
D76V7, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            0             62
  CLUS_2            1             35
  CLUS_3            3             25
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK2 MUTATED        3      1      0
  JAK2 WILD-TYPE     86     34     22
D76V8, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            1             34
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK2 MUTATED        2      2      0
  JAK2 WILD-TYPE     60     49     31
D76V9, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            2             49
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK2 MUTATED        2      1      1
  JAK2 WILD-TYPE     73     44     23
D76V10, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            2             73
  CLUS_2            1             44
  CLUS_3            1             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = COL28A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL28A1 MUTATED        4      1      0
  COL28A1 WILD-TYPE     62     64     14
D77V1, multiclass
        clus
vv       COL28A1 MUTATED COL28A1 WILD-TYPE
  CLUS_1               4                62
  CLUS_2               1                64
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL28A1 MUTATED        2      0      1      2
  COL28A1 WILD-TYPE     36     29     44     32
D77V2, multiclass
        clus
vv       COL28A1 MUTATED COL28A1 WILD-TYPE
  CLUS_1               2                36
  CLUS_2               0                29
  CLUS_3               1                44
  CLUS_4               2                32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL28A1 MUTATED        0      3      1      0      0
  COL28A1 WILD-TYPE     34     13     10     11     13
D77V3, multiclass
        clus
vv       COL28A1 MUTATED COL28A1 WILD-TYPE
  CLUS_1               0                34
  CLUS_2               3                13
  CLUS_3               1                10
  CLUS_4               0                11
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COL28A1 MUTATED        0      3      0      0      0      0      1
  COL28A1 WILD-TYPE     12     14     21      9      6     14      5
D77V4, multiclass
        clus
vv       COL28A1 MUTATED COL28A1 WILD-TYPE
  CLUS_1               0                12
  CLUS_2               3                14
  CLUS_3               0                21
  CLUS_4               0                 9
  CLUS_5               0                 6
  CLUS_6               0                14
  CLUS_7               1                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL28A1 MUTATED        4      1      0
  COL28A1 WILD-TYPE     67     42     32
D77V5, multiclass
        clus
vv       COL28A1 MUTATED COL28A1 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               1                42
  CLUS_3               0                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL28A1 MUTATED        2      3      0
  COL28A1 WILD-TYPE     65     60     16
D77V6, multiclass
        clus
vv       COL28A1 MUTATED COL28A1 WILD-TYPE
  CLUS_1               2                65
  CLUS_2               3                60
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL28A1 MUTATED        1      1      3      0
  COL28A1 WILD-TYPE     61     35     25     20
D77V7, multiclass
        clus
vv       COL28A1 MUTATED COL28A1 WILD-TYPE
  CLUS_1               1                61
  CLUS_2               1                35
  CLUS_3               3                25
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL28A1 MUTATED        5      0      0
  COL28A1 WILD-TYPE     84     35     22
D77V8, multiclass
        clus
vv       COL28A1 MUTATED COL28A1 WILD-TYPE
  CLUS_1               5                84
  CLUS_2               0                35
  CLUS_3               0                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL28A1 MUTATED        3      2      0
  COL28A1 WILD-TYPE     59     49     31
D77V9, multiclass
        clus
vv       COL28A1 MUTATED COL28A1 WILD-TYPE
  CLUS_1               3                59
  CLUS_2               2                49
  CLUS_3               0                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL28A1 MUTATED        3      2      0
  COL28A1 WILD-TYPE     72     43     24
D77V10, multiclass
        clus
vv       COL28A1 MUTATED COL28A1 WILD-TYPE
  CLUS_1               3                72
  CLUS_2               2                43
  CLUS_3               0                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = KLHL20 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL20 MUTATED        2      1      0
  KLHL20 WILD-TYPE     64     64     14
D78V1, multiclass
        clus
vv       KLHL20 MUTATED KLHL20 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              1               64
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL20 MUTATED        1      0      0      2
  KLHL20 WILD-TYPE     37     29     45     32
D78V2, multiclass
        clus
vv       KLHL20 MUTATED KLHL20 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              0               29
  CLUS_3              0               45
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL20 MUTATED        0      1      1      0      1
  KLHL20 WILD-TYPE     34     15     10     11     12
D78V3, multiclass
        clus
vv       KLHL20 MUTATED KLHL20 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              1               15
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLHL20 MUTATED        0      1      0      0      0      1      1
  KLHL20 WILD-TYPE     12     16     21      9      6     13      5
D78V4, multiclass
        clus
vv       KLHL20 MUTATED KLHL20 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              1               16
  CLUS_3              0               21
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL20 MUTATED        2      1      0
  KLHL20 WILD-TYPE     69     42     32
D78V5, multiclass
        clus
vv       KLHL20 MUTATED KLHL20 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               42
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL20 MUTATED        1      2      0
  KLHL20 WILD-TYPE     66     61     16
D78V6, multiclass
        clus
vv       KLHL20 MUTATED KLHL20 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              2               61
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL20 MUTATED        1      1      1      0
  KLHL20 WILD-TYPE     61     35     27     20
D78V7, multiclass
        clus
vv       KLHL20 MUTATED KLHL20 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              1               35
  CLUS_3              1               27
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL20 MUTATED        3      0      0
  KLHL20 WILD-TYPE     86     35     22
D78V8, multiclass
        clus
vv       KLHL20 MUTATED KLHL20 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL20 MUTATED        2      1      0
  KLHL20 WILD-TYPE     60     50     31
D78V9, multiclass
        clus
vv       KLHL20 MUTATED KLHL20 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               50
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL20 MUTATED        1      2      0
  KLHL20 WILD-TYPE     74     43     24
D78V10, multiclass
        clus
vv       KLHL20 MUTATED KLHL20 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              2               43
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = WRN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        3      0      1
  WRN WILD-TYPE     63     65     13
D79V1, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           3            63
  CLUS_2           0            65
  CLUS_3           1            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        1      1      0      2
  WRN WILD-TYPE     37     28     45     32
D79V2, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           1            37
  CLUS_2           1            28
  CLUS_3           0            45
  CLUS_4           2            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WRN MUTATED        0      0      0      1      0
  WRN WILD-TYPE     34     16     11     10     13
D79V3, multiclass
[1] "Remove cluster labels:" "WRN MUTATED"           
clus
  WRN MUTATED WRN WILD-TYPE 
            1            84 
   TCGA-2L-AAQA    TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-3A-A9I5 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-6879    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A4P5 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-H6-A45N 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HV-A5A6    TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7925    TCGA-HZ-8001 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-8003    TCGA-HZ-8005    TCGA-HZ-8315    TCGA-HZ-8519    TCGA-HZ-A4BH 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-7651    TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-7888    TCGA-IB-7889    TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A7LX    TCGA-IB-A7M4 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP    TCGA-IB-AAUS 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-AAUU    TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5    TCGA-M8-A5N4 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-OE-A75W    TCGA-PZ-A5RE    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-RB-AA9M    TCGA-S4-A8RM    TCGA-S4-A8RO    TCGA-S4-A8RP    TCGA-US-A774 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77G    TCGA-XD-AAUL 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WRN MUTATED        0      0      0      0      0      1      0
  WRN WILD-TYPE     12     17     21      9      6     13      6
D79V4, multiclass
[1] "Remove cluster labels:" "WRN MUTATED"           
clus
  WRN MUTATED WRN WILD-TYPE 
            1            84 
   TCGA-2L-AAQA    TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-3A-A9I5 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-6879    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A4P5 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-H6-A45N 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HV-A5A6    TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7925    TCGA-HZ-8001 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-8003    TCGA-HZ-8005    TCGA-HZ-8315    TCGA-HZ-8519    TCGA-HZ-A4BH 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-7651    TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-7888    TCGA-IB-7889    TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A7LX    TCGA-IB-A7M4 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP    TCGA-IB-AAUS 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-AAUU    TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5    TCGA-M8-A5N4 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-OE-A75W    TCGA-PZ-A5RE    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-RB-AA9M    TCGA-S4-A8RM    TCGA-S4-A8RO    TCGA-S4-A8RP    TCGA-US-A774 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77G    TCGA-XD-AAUL 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        1      1      2
  WRN WILD-TYPE     70     42     30
D79V5, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           1            70
  CLUS_2           1            42
  CLUS_3           2            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        2      2      0
  WRN WILD-TYPE     65     61     16
D79V6, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           2            65
  CLUS_2           2            61
  CLUS_3           0            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      1      3      0
  WRN WILD-TYPE     62     35     25     20
D79V7, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0            62
  CLUS_2           1            35
  CLUS_3           3            25
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        2      1      1
  WRN WILD-TYPE     87     34     21
D79V8, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           2            87
  CLUS_2           1            34
  CLUS_3           1            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      3      1
  WRN WILD-TYPE     62     48     30
D79V9, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0            62
  CLUS_2           3            48
  CLUS_3           1            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        2      0      2
  WRN WILD-TYPE     73     45     22
D79V10, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           2            73
  CLUS_2           0            45
  CLUS_3           2            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = P2RY1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RY1 MUTATED        1      3      1
  P2RY1 WILD-TYPE     65     62     13
D80V1, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             3              62
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY1 MUTATED        2      0      3      0
  P2RY1 WILD-TYPE     36     29     42     34
D80V2, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             3              42
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY1 MUTATED        2      0      1      1      1
  P2RY1 WILD-TYPE     32     16     10     10     12
D80V3, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  P2RY1 MUTATED        0      0      0      0      2      0      3
  P2RY1 WILD-TYPE     12     17     21      9      4     14      3
D80V4, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             2               4
  CLUS_6             0              14
  CLUS_7             3               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RY1 MUTATED        4      1      0
  P2RY1 WILD-TYPE     67     42     32
D80V5, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RY1 MUTATED        3      2      0
  P2RY1 WILD-TYPE     64     61     16
D80V6, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY1 MUTATED        3      1      1      0
  P2RY1 WILD-TYPE     59     35     27     20
D80V7, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RY1 MUTATED        5      0      0
  P2RY1 WILD-TYPE     84     35     22
D80V8, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RY1 MUTATED        4      0      1
  P2RY1 WILD-TYPE     58     51     30
D80V9, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              51
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RY1 MUTATED        4      1      0
  P2RY1 WILD-TYPE     71     44     24
D80V10, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             4              71
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = RBL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL2 MUTATED        2      2      0
  RBL2 WILD-TYPE     64     63     14
D81V1, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            2             64
  CLUS_2            2             63
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL2 MUTATED        1      0      2      1
  RBL2 WILD-TYPE     37     29     43     33
D81V2, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            1             37
  CLUS_2            0             29
  CLUS_3            2             43
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBL2 MUTATED        1      1      1      0      1
  RBL2 WILD-TYPE     33     15     10     11     12
D81V3, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            1             15
  CLUS_3            1             10
  CLUS_4            0             11
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBL2 MUTATED        0      2      1      0      0      0      1
  RBL2 WILD-TYPE     12     15     20      9      6     14      5
D81V4, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            0             12
  CLUS_2            2             15
  CLUS_3            1             20
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            0             14
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL2 MUTATED        1      2      1
  RBL2 WILD-TYPE     70     41     31
D81V5, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             41
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL2 MUTATED        2      1      1
  RBL2 WILD-TYPE     65     62     15
D81V6, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            1             62
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL2 MUTATED        2      1      1      0
  RBL2 WILD-TYPE     60     35     27     20
D81V7, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             35
  CLUS_3            1             27
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL2 MUTATED        3      0      1
  RBL2 WILD-TYPE     86     35     21
D81V8, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            0             35
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL2 MUTATED        2      1      1
  RBL2 WILD-TYPE     60     50     30
D81V9, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             50
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL2 MUTATED        2      1      1
  RBL2 WILD-TYPE     73     44     23
D81V10, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            2             73
  CLUS_2            1             44
  CLUS_3            1             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = BCLAF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        2      4      1
  BCLAF1 WILD-TYPE     64     61     13
D82V1, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              4               61
  CLUS_3              1               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        1      0      4      2
  BCLAF1 WILD-TYPE     37     29     41     32
D82V2, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              0               29
  CLUS_3              4               41
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCLAF1 MUTATED        1      2      1      1      0
  BCLAF1 WILD-TYPE     33     14     10     10     13
D82V3, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              2               14
  CLUS_3              1               10
  CLUS_4              1               10
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCLAF1 MUTATED        0      2      1      0      1      0      1
  BCLAF1 WILD-TYPE     12     15     20      9      5     14      5
D82V4, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              2               15
  CLUS_3              1               20
  CLUS_4              0                9
  CLUS_5              1                5
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        5      1      1
  BCLAF1 WILD-TYPE     66     42     31
D82V5, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              1               42
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        2      4      1
  BCLAF1 WILD-TYPE     65     59     15
D82V6, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              4               59
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        3      1      2      1
  BCLAF1 WILD-TYPE     59     35     26     19
D82V7, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               35
  CLUS_3              2               26
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        6      0      1
  BCLAF1 WILD-TYPE     83     35     21
D82V8, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              6               83
  CLUS_2              0               35
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        5      1      1
  BCLAF1 WILD-TYPE     57     50     30
D82V9, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               50
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        5      1      1
  BCLAF1 WILD-TYPE     70     44     23
D82V10, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              5               70
  CLUS_2              1               44
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = MORF4L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MORF4L1 MUTATED        1      2      0
  MORF4L1 WILD-TYPE     65     63     14
D83V1, multiclass
        clus
vv       MORF4L1 MUTATED MORF4L1 WILD-TYPE
  CLUS_1               1                65
  CLUS_2               2                63
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORF4L1 MUTATED        1      0      1      1
  MORF4L1 WILD-TYPE     37     29     44     33
D83V2, multiclass
        clus
vv       MORF4L1 MUTATED MORF4L1 WILD-TYPE
  CLUS_1               1                37
  CLUS_2               0                29
  CLUS_3               1                44
  CLUS_4               1                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MORF4L1 MUTATED        0      3      0      0      0
  MORF4L1 WILD-TYPE     34     13     11     11     13
D83V3, multiclass
        clus
vv       MORF4L1 MUTATED MORF4L1 WILD-TYPE
  CLUS_1               0                34
  CLUS_2               3                13
  CLUS_3               0                11
  CLUS_4               0                11
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MORF4L1 MUTATED        0      3      0      0      0      0      0
  MORF4L1 WILD-TYPE     12     14     21      9      6     14      6
D83V4, multiclass
        clus
vv       MORF4L1 MUTATED MORF4L1 WILD-TYPE
  CLUS_1               0                12
  CLUS_2               3                14
  CLUS_3               0                21
  CLUS_4               0                 9
  CLUS_5               0                 6
  CLUS_6               0                14
  CLUS_7               0                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MORF4L1 MUTATED        3      0      0
  MORF4L1 WILD-TYPE     68     43     32
D83V5, multiclass
        clus
vv       MORF4L1 MUTATED MORF4L1 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               0                43
  CLUS_3               0                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MORF4L1 MUTATED        0      3      0
  MORF4L1 WILD-TYPE     67     60     16
D83V6, multiclass
        clus
vv       MORF4L1 MUTATED MORF4L1 WILD-TYPE
  CLUS_1               0                67
  CLUS_2               3                60
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORF4L1 MUTATED        2      0      1      0
  MORF4L1 WILD-TYPE     60     36     27     20
D83V7, multiclass
        clus
vv       MORF4L1 MUTATED MORF4L1 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               0                36
  CLUS_3               1                27
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MORF4L1 MUTATED        3      0      0
  MORF4L1 WILD-TYPE     86     35     22
D83V8, multiclass
        clus
vv       MORF4L1 MUTATED MORF4L1 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               0                35
  CLUS_3               0                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MORF4L1 MUTATED        3      0      0
  MORF4L1 WILD-TYPE     59     51     31
D83V9, multiclass
        clus
vv       MORF4L1 MUTATED MORF4L1 WILD-TYPE
  CLUS_1               3                59
  CLUS_2               0                51
  CLUS_3               0                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MORF4L1 MUTATED        3      0      0
  MORF4L1 WILD-TYPE     72     45     24
D83V10, multiclass
        clus
vv       MORF4L1 MUTATED MORF4L1 WILD-TYPE
  CLUS_1               3                72
  CLUS_2               0                45
  CLUS_3               0                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = SEPHS2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEPHS2 MUTATED        3      2      0
  SEPHS2 WILD-TYPE     63     63     14
D84V1, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              3               63
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEPHS2 MUTATED        1      1      3      0
  SEPHS2 WILD-TYPE     37     28     42     34
D84V2, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              1               28
  CLUS_3              3               42
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEPHS2 MUTATED        2      1      0      2      0
  SEPHS2 WILD-TYPE     32     15     11      9     13
D84V3, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              1               15
  CLUS_3              0               11
  CLUS_4              2                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SEPHS2 MUTATED        0      1      2      0      0      1      1
  SEPHS2 WILD-TYPE     12     16     19      9      6     13      5
D84V4, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              1               16
  CLUS_3              2               19
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEPHS2 MUTATED        3      1      1
  SEPHS2 WILD-TYPE     68     42     31
D84V5, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               42
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEPHS2 MUTATED        1      3      1
  SEPHS2 WILD-TYPE     66     60     15
D84V6, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              3               60
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEPHS2 MUTATED        3      1      1      0
  SEPHS2 WILD-TYPE     59     35     27     20
D84V7, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               35
  CLUS_3              1               27
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEPHS2 MUTATED        3      1      1
  SEPHS2 WILD-TYPE     86     34     21
D84V8, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              1               34
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEPHS2 MUTATED        3      1      1
  SEPHS2 WILD-TYPE     59     50     30
D84V9, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               50
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEPHS2 MUTATED        3      1      1
  SEPHS2 WILD-TYPE     72     44     23
D84V10, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              3               72
  CLUS_2              1               44
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = HELZ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HELZ MUTATED        3      2      0
  HELZ WILD-TYPE     63     63     14
D85V1, multiclass
        clus
vv       HELZ MUTATED HELZ WILD-TYPE
  CLUS_1            3             63
  CLUS_2            2             63
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HELZ MUTATED        1      1      2      1
  HELZ WILD-TYPE     37     28     43     33
D85V2, multiclass
        clus
vv       HELZ MUTATED HELZ WILD-TYPE
  CLUS_1            1             37
  CLUS_2            1             28
  CLUS_3            2             43
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HELZ MUTATED        0      3      1      0      0
  HELZ WILD-TYPE     34     13     10     11     13
D85V3, multiclass
        clus
vv       HELZ MUTATED HELZ WILD-TYPE
  CLUS_1            0             34
  CLUS_2            3             13
  CLUS_3            1             10
  CLUS_4            0             11
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HELZ MUTATED        0      3      0      0      0      0      1
  HELZ WILD-TYPE     12     14     21      9      6     14      5
D85V4, multiclass
        clus
vv       HELZ MUTATED HELZ WILD-TYPE
  CLUS_1            0             12
  CLUS_2            3             14
  CLUS_3            0             21
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            0             14
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HELZ MUTATED        3      2      0
  HELZ WILD-TYPE     68     41     32
D85V5, multiclass
        clus
vv       HELZ MUTATED HELZ WILD-TYPE
  CLUS_1            3             68
  CLUS_2            2             41
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HELZ MUTATED        2      3      0
  HELZ WILD-TYPE     65     60     16
D85V6, multiclass
        clus
vv       HELZ MUTATED HELZ WILD-TYPE
  CLUS_1            2             65
  CLUS_2            3             60
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HELZ MUTATED        2      2      1      0
  HELZ WILD-TYPE     60     34     27     20
D85V7, multiclass
        clus
vv       HELZ MUTATED HELZ WILD-TYPE
  CLUS_1            2             60
  CLUS_2            2             34
  CLUS_3            1             27
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HELZ MUTATED        4      1      0
  HELZ WILD-TYPE     85     34     22
D85V8, multiclass
        clus
vv       HELZ MUTATED HELZ WILD-TYPE
  CLUS_1            4             85
  CLUS_2            1             34
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HELZ MUTATED        3      2      0
  HELZ WILD-TYPE     59     49     31
D85V9, multiclass
        clus
vv       HELZ MUTATED HELZ WILD-TYPE
  CLUS_1            3             59
  CLUS_2            2             49
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HELZ MUTATED        3      2      0
  HELZ WILD-TYPE     72     43     24
D85V10, multiclass
        clus
vv       HELZ MUTATED HELZ WILD-TYPE
  CLUS_1            3             72
  CLUS_2            2             43
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = DOCK8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK8 MUTATED        2      1      2
  DOCK8 WILD-TYPE     64     64     12
D86V1, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             1              64
  CLUS_3             2              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK8 MUTATED        2      2      1      0
  DOCK8 WILD-TYPE     36     27     44     34
D86V2, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             2              27
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK8 MUTATED        1      0      1      1      0
  DOCK8 WILD-TYPE     33     16     10     10     13
D86V3, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DOCK8 MUTATED        0      0      1      0      1      0      1
  DOCK8 WILD-TYPE     12     17     20      9      5     14      5
D86V4, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             1               5
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK8 MUTATED        2      3      0
  DOCK8 WILD-TYPE     69     40     32
D86V5, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             3              40
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK8 MUTATED        5      0      0
  DOCK8 WILD-TYPE     62     63     16
D86V6, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             5              62
  CLUS_2             0              63
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK8 MUTATED        2      2      1      0
  DOCK8 WILD-TYPE     60     34     27     20
D86V7, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              34
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK8 MUTATED        4      1      0
  DOCK8 WILD-TYPE     85     34     22
D86V8, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK8 MUTATED        2      2      1
  DOCK8 WILD-TYPE     60     49     30
D86V9, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              49
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK8 MUTATED        2      3      0
  DOCK8 WILD-TYPE     73     42     24
D86V10, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             3              42
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = KLK13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK13 MUTATED        2      3      0
  KLK13 WILD-TYPE     64     62     14
D87V1, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             3              62
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK13 MUTATED        2      0      2      1
  KLK13 WILD-TYPE     36     29     43     33
D87V2, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             2              43
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLK13 MUTATED        0      0      2      1      0
  KLK13 WILD-TYPE     34     16      9     10     13
D87V3, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             0              16
  CLUS_3             2               9
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLK13 MUTATED        0      0      0      1      0      1      1
  KLK13 WILD-TYPE     12     17     21      8      6     13      5
D87V4, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             0              21
  CLUS_4             1               8
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK13 MUTATED        3      2      0
  KLK13 WILD-TYPE     68     41     32
D87V5, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              41
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK13 MUTATED        2      3      0
  KLK13 WILD-TYPE     65     60     16
D87V6, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK13 MUTATED        1      2      2      0
  KLK13 WILD-TYPE     61     34     26     20
D87V7, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              34
  CLUS_3             2              26
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK13 MUTATED        4      1      0
  KLK13 WILD-TYPE     85     34     22
D87V8, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK13 MUTATED        4      0      1
  KLK13 WILD-TYPE     58     51     30
D87V9, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              51
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK13 MUTATED        3      2      0
  KLK13 WILD-TYPE     72     43     24
D87V10, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = OXR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXR1 MUTATED        3      1      0
  OXR1 WILD-TYPE     63     64     14
D88V1, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            3             63
  CLUS_2            1             64
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXR1 MUTATED        1      1      1      1
  OXR1 WILD-TYPE     37     28     44     33
D88V2, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            1             37
  CLUS_2            1             28
  CLUS_3            1             44
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXR1 MUTATED        0      2      0      0      1
  OXR1 WILD-TYPE     34     14     11     11     12
D88V3, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            2             14
  CLUS_3            0             11
  CLUS_4            0             11
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OXR1 MUTATED        0      2      0      0      0      1      0
  OXR1 WILD-TYPE     12     15     21      9      6     13      6
D88V4, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            0             12
  CLUS_2            2             15
  CLUS_3            0             21
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            1             13
  CLUS_7            0              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXR1 MUTATED        3      1      0
  OXR1 WILD-TYPE     68     42     32
D88V5, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            1             42
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXR1 MUTATED        3      1      0
  OXR1 WILD-TYPE     64     62     16
D88V6, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            3             64
  CLUS_2            1             62
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXR1 MUTATED        1      1      2      0
  OXR1 WILD-TYPE     61     35     26     20
D88V7, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             35
  CLUS_3            2             26
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXR1 MUTATED        3      1      0
  OXR1 WILD-TYPE     86     34     22
D88V8, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            1             34
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXR1 MUTATED        1      3      0
  OXR1 WILD-TYPE     61     48     31
D88V9, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            3             48
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXR1 MUTATED        2      2      0
  OXR1 WILD-TYPE     73     43     24
D88V10, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            2             73
  CLUS_2            2             43
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = OR52D1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR52D1 MUTATED        2      1      0
  OR52D1 WILD-TYPE     64     64     14
D89V1, multiclass
        clus
vv       OR52D1 MUTATED OR52D1 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              1               64
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR52D1 MUTATED        1      2      1      0
  OR52D1 WILD-TYPE     37     27     44     34
D89V2, multiclass
        clus
vv       OR52D1 MUTATED OR52D1 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              2               27
  CLUS_3              1               44
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR52D1 MUTATED        1      0      3      0      0
  OR52D1 WILD-TYPE     33     16      8     11     13
D89V3, multiclass
        clus
vv       OR52D1 MUTATED OR52D1 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              0               16
  CLUS_3              3                8
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR52D1 MUTATED        0      0      1      2      0      0      1
  OR52D1 WILD-TYPE     12     17     20      7      6     14      5
D89V4, multiclass
        clus
vv       OR52D1 MUTATED OR52D1 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              0               17
  CLUS_3              1               20
  CLUS_4              2                7
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR52D1 MUTATED        0      3      1
  OR52D1 WILD-TYPE     71     40     31
D89V5, multiclass
        clus
vv       OR52D1 MUTATED OR52D1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               40
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR52D1 MUTATED        3      0      1
  OR52D1 WILD-TYPE     64     63     15
D89V6, multiclass
        clus
vv       OR52D1 MUTATED OR52D1 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              0               63
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR52D1 MUTATED        1      2      0      1
  OR52D1 WILD-TYPE     61     34     28     19
D89V7, multiclass
        clus
vv       OR52D1 MUTATED OR52D1 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              2               34
  CLUS_3              0               28
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR52D1 MUTATED        2      1      1
  OR52D1 WILD-TYPE     87     34     21
D89V8, multiclass
        clus
vv       OR52D1 MUTATED OR52D1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              1               34
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR52D1 MUTATED        1      2      1
  OR52D1 WILD-TYPE     61     49     30
D89V9, multiclass
        clus
vv       OR52D1 MUTATED OR52D1 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              2               49
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR52D1 MUTATED        0      3      1
  OR52D1 WILD-TYPE     75     42     23
D89V10, multiclass
        clus
vv       OR52D1 MUTATED OR52D1 WILD-TYPE
  CLUS_1              0               75
  CLUS_2              3               42
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = CSTF2T MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSTF2T MUTATED        2      1      0
  CSTF2T WILD-TYPE     64     64     14
D90V1, multiclass
        clus
vv       CSTF2T MUTATED CSTF2T WILD-TYPE
  CLUS_1              2               64
  CLUS_2              1               64
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSTF2T MUTATED        1      0      0      2
  CSTF2T WILD-TYPE     37     29     45     32
D90V2, multiclass
        clus
vv       CSTF2T MUTATED CSTF2T WILD-TYPE
  CLUS_1              1               37
  CLUS_2              0               29
  CLUS_3              0               45
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSTF2T MUTATED        0      1      1      0      0
  CSTF2T WILD-TYPE     34     15     10     11     13
D90V3, multiclass
[1] "Remove cluster labels:" "CSTF2T MUTATED"        
clus
  CSTF2T MUTATED CSTF2T WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-HV-A5A6       TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-8001 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSTF2T MUTATED        0      1      0      1      0      0      0
  CSTF2T WILD-TYPE     12     16     21      8      6     14      6
D90V4, multiclass
[1] "Remove cluster labels:" "CSTF2T MUTATED"        
clus
  CSTF2T MUTATED CSTF2T WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-HV-A5A6       TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-8001 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" "CSTF2T WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSTF2T MUTATED        1      1      1
  CSTF2T WILD-TYPE     70     42     31
D90V5, multiclass
        clus
vv       CSTF2T MUTATED CSTF2T WILD-TYPE
  CLUS_1              1               70
  CLUS_2              1               42
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSTF2T MUTATED        1      1      1
  CSTF2T WILD-TYPE     66     62     15
D90V6, multiclass
        clus
vv       CSTF2T MUTATED CSTF2T WILD-TYPE
  CLUS_1              1               66
  CLUS_2              1               62
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSTF2T MUTATED        0      1      1      1
  CSTF2T WILD-TYPE     62     35     27     19
D90V7, multiclass
        clus
vv       CSTF2T MUTATED CSTF2T WILD-TYPE
  CLUS_1              0               62
  CLUS_2              1               35
  CLUS_3              1               27
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSTF2T MUTATED        2      0      1
  CSTF2T WILD-TYPE     87     35     21
D90V8, multiclass
        clus
vv       CSTF2T MUTATED CSTF2T WILD-TYPE
  CLUS_1              2               87
  CLUS_2              0               35
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSTF2T MUTATED        1      2      0
  CSTF2T WILD-TYPE     61     49     31
D90V9, multiclass
        clus
vv       CSTF2T MUTATED CSTF2T WILD-TYPE
  CLUS_1              1               61
  CLUS_2              2               49
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSTF2T MUTATED        1      1      1
  CSTF2T WILD-TYPE     74     44     23
D90V10, multiclass
        clus
vv       CSTF2T MUTATED CSTF2T WILD-TYPE
  CLUS_1              1               74
  CLUS_2              1               44
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = AP3B1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        2      2      0
  AP3B1 WILD-TYPE     64     63     14
D91V1, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3B1 MUTATED        2      0      0      2
  AP3B1 WILD-TYPE     36     29     45     32
D91V2, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             0              45
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3B1 MUTATED        1      0      1      0      2
  AP3B1 WILD-TYPE     33     16     10     11     11
D91V3, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AP3B1 MUTATED        1      1      0      0      0      1      1
  AP3B1 WILD-TYPE     11     16     21      9      6     13      5
D91V4, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1              11
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        2      1      1
  AP3B1 WILD-TYPE     69     42     31
D91V5, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        1      2      1
  AP3B1 WILD-TYPE     66     61     15
D91V6, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3B1 MUTATED        2      1      1      0
  AP3B1 WILD-TYPE     60     35     27     20
D91V7, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        3      0      1
  AP3B1 WILD-TYPE     86     35     21
D91V8, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        2      1      1
  AP3B1 WILD-TYPE     60     50     30
D91V9, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              50
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        1      2      1
  AP3B1 WILD-TYPE     74     43     23
D91V10, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2              43
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = OMA1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OMA1 MUTATED        1      1      1
  OMA1 WILD-TYPE     65     64     13
D92V1, multiclass
        clus
vv       OMA1 MUTATED OMA1 WILD-TYPE
  CLUS_1            1             65
  CLUS_2            1             64
  CLUS_3            1             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OMA1 MUTATED        2      0      0      1
  OMA1 WILD-TYPE     36     29     45     33
D92V2, multiclass
        clus
vv       OMA1 MUTATED OMA1 WILD-TYPE
  CLUS_1            2             36
  CLUS_2            0             29
  CLUS_3            0             45
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OMA1 MUTATED        0      0      1      0      2
  OMA1 WILD-TYPE     34     16     10     11     11
D92V3, multiclass
        clus
vv       OMA1 MUTATED OMA1 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            0             16
  CLUS_3            1             10
  CLUS_4            0             11
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OMA1 MUTATED        0      0      0      0      0      2      1
  OMA1 WILD-TYPE     12     17     21      9      6     12      5
D92V4, multiclass
        clus
vv       OMA1 MUTATED OMA1 WILD-TYPE
  CLUS_1            0             12
  CLUS_2            0             17
  CLUS_3            0             21
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            2             12
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OMA1 MUTATED        2      1      0
  OMA1 WILD-TYPE     69     42     32
D92V5, multiclass
        clus
vv       OMA1 MUTATED OMA1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             42
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OMA1 MUTATED        1      2      0
  OMA1 WILD-TYPE     66     61     16
D92V6, multiclass
        clus
vv       OMA1 MUTATED OMA1 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            2             61
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OMA1 MUTATED        1      1      1      0
  OMA1 WILD-TYPE     61     35     27     20
D92V7, multiclass
        clus
vv       OMA1 MUTATED OMA1 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             35
  CLUS_3            1             27
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OMA1 MUTATED        3      0      0
  OMA1 WILD-TYPE     86     35     22
D92V8, multiclass
        clus
vv       OMA1 MUTATED OMA1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            0             35
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OMA1 MUTATED        2      0      0
  OMA1 WILD-TYPE     60     51     31
D92V9, multiclass
[1] "Remove cluster labels:" "OMA1 MUTATED"          
clus
  OMA1 MUTATED OMA1 WILD-TYPE 
             2            142 
    TCGA-2J-AAB1     TCGA-2J-AAB4     TCGA-2J-AAB6     TCGA-2J-AAB8 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-2J-AAB9     TCGA-2J-AABA     TCGA-2J-AABE     TCGA-2J-AABF 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO     TCGA-2J-AABR 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-2J-AABU     TCGA-2L-AAQA     TCGA-2L-AAQE     TCGA-2L-AAQI 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-2L-AAQJ     TCGA-2L-AAQL     TCGA-3A-A9I5     TCGA-3A-A9I7 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-3A-A9I9     TCGA-3A-A9IB     TCGA-3A-A9IC     TCGA-3A-A9IH 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3A-A9J0 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-3E-AAAY     TCGA-3E-AAAZ     TCGA-F2-6879     TCGA-F2-A44G 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-F2-A44H     TCGA-F2-A7TX     TCGA-F2-A8YN     TCGA-FB-A4P5 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-FB-A4P6     TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-FB-AAPS     TCGA-FB-AAPU     TCGA-FB-AAPY     TCGA-FB-AAPZ 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-FB-AAQ0     TCGA-FB-AAQ1     TCGA-FB-AAQ2     TCGA-FB-AAQ3 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-H6-8124     TCGA-H6-A45N     TCGA-HV-A5A3     TCGA-HV-A5A4 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HV-A5A5     TCGA-HV-A5A6     TCGA-HV-A7OL     TCGA-HV-AA8V 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HV-AA8X     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HZ-8315     TCGA-HZ-8317     TCGA-HZ-8519     TCGA-HZ-8636 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HZ-8637     TCGA-HZ-A49G     TCGA-HZ-A49H     TCGA-HZ-A49I 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-HZ-A77O     TCGA-HZ-A77P 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HZ-A77Q     TCGA-HZ-A8P0     TCGA-HZ-A8P1     TCGA-HZ-A9TJ 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7645     TCGA-IB-7646     TCGA-IB-7647 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A6UG     TCGA-IB-A7LX 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-AAUP     TCGA-IB-AAUQ     TCGA-IB-AAUR     TCGA-IB-AAUS 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-AAUT     TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-S4-A8RM     TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-XD-AAUG     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-XN-A8T3     TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-YY-A8LH     TCGA-Z5-AAPL 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OMA1 MUTATED        0      2      0
  OMA1 WILD-TYPE     75     43     24
D92V10, multiclass
[1] "Remove cluster labels:" "OMA1 MUTATED"          
clus
  OMA1 MUTATED OMA1 WILD-TYPE 
             2            142 
    TCGA-2J-AAB1     TCGA-2J-AAB4     TCGA-2J-AAB6     TCGA-2J-AAB8 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-2J-AAB9     TCGA-2J-AABA     TCGA-2J-AABE     TCGA-2J-AABF 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO     TCGA-2J-AABR 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-2J-AABU     TCGA-2L-AAQA     TCGA-2L-AAQE     TCGA-2L-AAQI 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-2L-AAQJ     TCGA-2L-AAQL     TCGA-3A-A9I5     TCGA-3A-A9I7 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-3A-A9I9     TCGA-3A-A9IB     TCGA-3A-A9IC     TCGA-3A-A9IH 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3A-A9J0 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-3E-AAAY     TCGA-3E-AAAZ     TCGA-F2-6879     TCGA-F2-A44G 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-F2-A44H     TCGA-F2-A7TX     TCGA-F2-A8YN     TCGA-FB-A4P5 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-FB-A4P6     TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-FB-AAPS     TCGA-FB-AAPU     TCGA-FB-AAPY     TCGA-FB-AAPZ 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-FB-AAQ0     TCGA-FB-AAQ1     TCGA-FB-AAQ2     TCGA-FB-AAQ3 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-H6-8124     TCGA-H6-A45N     TCGA-HV-A5A3     TCGA-HV-A5A4 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HV-A5A5     TCGA-HV-A5A6     TCGA-HV-A7OL     TCGA-HV-AA8V 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HV-AA8X     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HZ-8315     TCGA-HZ-8317     TCGA-HZ-8519     TCGA-HZ-8636 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HZ-8637     TCGA-HZ-A49G     TCGA-HZ-A49H     TCGA-HZ-A49I 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-HZ-A77O     TCGA-HZ-A77P 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-HZ-A77Q     TCGA-HZ-A8P0     TCGA-HZ-A8P1     TCGA-HZ-A9TJ 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7645     TCGA-IB-7646     TCGA-IB-7647 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A6UG     TCGA-IB-A7LX 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-AAUP     TCGA-IB-AAUQ     TCGA-IB-AAUR     TCGA-IB-AAUS 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-IB-AAUT     TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-S4-A8RM     TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-XD-AAUG     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-XN-A8T3     TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 
    TCGA-YY-A8LH     TCGA-Z5-AAPL 
"OMA1 WILD-TYPE" "OMA1 WILD-TYPE" 

Clustering(93) Variable = IYD MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IYD MUTATED        2      3      1
  IYD WILD-TYPE     64     62     13
D93V1, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           2            64
  CLUS_2           3            62
  CLUS_3           1            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IYD MUTATED        1      1      3      1
  IYD WILD-TYPE     37     28     42     33
D93V2, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           1            37
  CLUS_2           1            28
  CLUS_3           3            42
  CLUS_4           1            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IYD MUTATED        2      0      0      0      0
  IYD WILD-TYPE     32     16     11     11     13
D93V3, multiclass
[1] "Remove cluster labels:" "IYD MUTATED"           
clus
  IYD MUTATED IYD WILD-TYPE 
            2            83 
   TCGA-2L-AAQA    TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-3A-A9I5 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-6879    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A4P5 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-H6-A45N 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-HV-A5A6    TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7925    TCGA-HZ-8001 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005    TCGA-HZ-8315    TCGA-HZ-8519 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7646    TCGA-IB-7647 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-7886 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889    TCGA-IB-7890    TCGA-IB-7891 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-7893    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A7LX 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-A7M4    TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-AAUS    TCGA-IB-AAUU    TCGA-LB-A7SX    TCGA-LB-A9Q5    TCGA-M8-A5N4 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-OE-A75W    TCGA-PZ-A5RE    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-RB-AA9M    TCGA-S4-A8RM    TCGA-S4-A8RO    TCGA-S4-A8RP    TCGA-US-A774 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-US-A776    TCGA-US-A77E    TCGA-US-A77G    TCGA-XD-AAUL    TCGA-XN-A8T5 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IYD MUTATED        0      0      0      0      0      1      1
  IYD WILD-TYPE     12     17     21      9      6     13      5
D93V4, multiclass
[1] "Remove cluster labels:" "IYD MUTATED"           
clus
  IYD MUTATED IYD WILD-TYPE 
            2            83 
   TCGA-2L-AAQA    TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-3A-A9I5 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-6879    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A4P5 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-H6-A45N 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-HV-A5A6    TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7925    TCGA-HZ-8001 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005    TCGA-HZ-8315    TCGA-HZ-8519 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7646    TCGA-IB-7647 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-7886 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889    TCGA-IB-7890    TCGA-IB-7891 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-7893    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A7LX 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-A7M4    TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-IB-AAUS    TCGA-IB-AAUU    TCGA-LB-A7SX    TCGA-LB-A9Q5    TCGA-M8-A5N4 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-OE-A75W    TCGA-PZ-A5RE    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-RB-AA9M    TCGA-S4-A8RM    TCGA-S4-A8RO    TCGA-S4-A8RP    TCGA-US-A774 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-US-A776    TCGA-US-A77E    TCGA-US-A77G    TCGA-XD-AAUL    TCGA-XN-A8T5 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
   TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH 
"IYD WILD-TYPE" "IYD WILD-TYPE" "IYD WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IYD MUTATED        4      2      0
  IYD WILD-TYPE     67     41     32
D93V5, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           4            67
  CLUS_2           2            41
  CLUS_3           0            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IYD MUTATED        3      3      0
  IYD WILD-TYPE     64     60     16
D93V6, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           3            64
  CLUS_2           3            60
  CLUS_3           0            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IYD MUTATED        4      1      1      0
  IYD WILD-TYPE     58     35     27     20
D93V7, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           4            58
  CLUS_2           1            35
  CLUS_3           1            27
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IYD MUTATED        5      1      0
  IYD WILD-TYPE     84     34     22
D93V8, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           5            84
  CLUS_2           1            34
  CLUS_3           0            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IYD MUTATED        4      0      2
  IYD WILD-TYPE     58     51     29
D93V9, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           4            58
  CLUS_2           0            51
  CLUS_3           2            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IYD MUTATED        5      1      0
  IYD WILD-TYPE     70     44     24
D93V10, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           5            70
  CLUS_2           1            44
  CLUS_3           0            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = NBPF9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF9 MUTATED        2      1      0
  NBPF9 WILD-TYPE     64     64     14
D94V1, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF9 MUTATED        0      1      0      2
  NBPF9 WILD-TYPE     38     28     45     32
D94V2, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             0              38
  CLUS_2             1              28
  CLUS_3             0              45
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF9 MUTATED        2      0      0      0      0
  NBPF9 WILD-TYPE     32     16     11     11     13
D94V3, multiclass
[1] "Remove cluster labels:" "NBPF9 MUTATED"         
clus
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N      TCGA-HV-A5A6 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBPF9 MUTATED        2      0      0      0      0      0      0
  NBPF9 WILD-TYPE     10     17     21      9      6     14      6
D94V4, multiclass
[1] "Remove cluster labels:" "NBPF9 MUTATED"         
clus
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N      TCGA-HV-A5A6 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF9 MUTATED        1      1      1
  NBPF9 WILD-TYPE     70     42     31
D94V5, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              42
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF9 MUTATED        1      1      1
  NBPF9 WILD-TYPE     66     62     15
D94V6, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             1              62
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF9 MUTATED        1      1      1      0
  NBPF9 WILD-TYPE     61     35     27     20
D94V7, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF9 MUTATED        1      1      1
  NBPF9 WILD-TYPE     88     34     21
D94V8, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1              34
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF9 MUTATED        0      2      1
  NBPF9 WILD-TYPE     62     49     30
D94V9, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             2              49
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF9 MUTATED        1      1      1
  NBPF9 WILD-TYPE     74     44     23
D94V10, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             1              44
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = PRSS3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRSS3 MUTATED        2      1      0
  PRSS3 WILD-TYPE     64     64     14
D95V1, multiclass
        clus
vv       PRSS3 MUTATED PRSS3 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS3 MUTATED        1      1      1      0
  PRSS3 WILD-TYPE     37     28     44     34
D95V2, multiclass
        clus
vv       PRSS3 MUTATED PRSS3 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             1              28
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS3 MUTATED        1      1      0      1      0
  PRSS3 WILD-TYPE     33     15     11     10     13
D95V3, multiclass
        clus
vv       PRSS3 MUTATED PRSS3 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              15
  CLUS_3             0              11
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRSS3 MUTATED        0      1      1      0      1      0      0
  PRSS3 WILD-TYPE     12     16     20      9      5     14      6
D95V4, multiclass
        clus
vv       PRSS3 MUTATED PRSS3 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             1               5
  CLUS_6             0              14
  CLUS_7             0               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRSS3 MUTATED        1      1      1
  PRSS3 WILD-TYPE     70     42     31
D95V5, multiclass
        clus
vv       PRSS3 MUTATED PRSS3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              42
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRSS3 MUTATED        2      0      1
  PRSS3 WILD-TYPE     65     63     15
D95V6, multiclass
        clus
vv       PRSS3 MUTATED PRSS3 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             0              63
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS3 MUTATED        1      1      1      0
  PRSS3 WILD-TYPE     61     35     27     20
D95V7, multiclass
        clus
vv       PRSS3 MUTATED PRSS3 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRSS3 MUTATED        1      1      1
  PRSS3 WILD-TYPE     88     34     21
D95V8, multiclass
        clus
vv       PRSS3 MUTATED PRSS3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1              34
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRSS3 MUTATED        1      1      1
  PRSS3 WILD-TYPE     61     50     30
D95V9, multiclass
        clus
vv       PRSS3 MUTATED PRSS3 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              50
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRSS3 MUTATED        0      2      1
  PRSS3 WILD-TYPE     75     43     23
D95V10, multiclass
        clus
vv       PRSS3 MUTATED PRSS3 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             2              43
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = COBL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COBL MUTATED        4      2      0
  COBL WILD-TYPE     62     63     14
D96V1, multiclass
        clus
vv       COBL MUTATED COBL WILD-TYPE
  CLUS_1            4             62
  CLUS_2            2             63
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COBL MUTATED        2      1      1      2
  COBL WILD-TYPE     36     28     44     32
D96V2, multiclass
        clus
vv       COBL MUTATED COBL WILD-TYPE
  CLUS_1            2             36
  CLUS_2            1             28
  CLUS_3            1             44
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COBL MUTATED        1      1      2      0      2
  COBL WILD-TYPE     33     15      9     11     11
D96V3, multiclass
        clus
vv       COBL MUTATED COBL WILD-TYPE
  CLUS_1            1             33
  CLUS_2            1             15
  CLUS_3            2              9
  CLUS_4            0             11
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COBL MUTATED        0      1      1      1      0      2      1
  COBL WILD-TYPE     12     16     20      8      6     12      5
D96V4, multiclass
        clus
vv       COBL MUTATED COBL WILD-TYPE
  CLUS_1            0             12
  CLUS_2            1             16
  CLUS_3            1             20
  CLUS_4            1              8
  CLUS_5            0              6
  CLUS_6            2             12
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COBL MUTATED        4      1      1
  COBL WILD-TYPE     67     42     31
D96V5, multiclass
        clus
vv       COBL MUTATED COBL WILD-TYPE
  CLUS_1            4             67
  CLUS_2            1             42
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COBL MUTATED        3      2      1
  COBL WILD-TYPE     64     61     15
D96V6, multiclass
        clus
vv       COBL MUTATED COBL WILD-TYPE
  CLUS_1            3             64
  CLUS_2            2             61
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COBL MUTATED        2      1      2      1
  COBL WILD-TYPE     60     35     26     19
D96V7, multiclass
        clus
vv       COBL MUTATED COBL WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             35
  CLUS_3            2             26
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COBL MUTATED        5      0      1
  COBL WILD-TYPE     84     35     21
D96V8, multiclass
        clus
vv       COBL MUTATED COBL WILD-TYPE
  CLUS_1            5             84
  CLUS_2            0             35
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COBL MUTATED        3      3      0
  COBL WILD-TYPE     59     48     31
D96V9, multiclass
        clus
vv       COBL MUTATED COBL WILD-TYPE
  CLUS_1            3             59
  CLUS_2            3             48
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COBL MUTATED        3      1      2
  COBL WILD-TYPE     72     44     22
D96V10, multiclass
        clus
vv       COBL MUTATED COBL WILD-TYPE
  CLUS_1            3             72
  CLUS_2            1             44
  CLUS_3            2             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = SORT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SORT1 MUTATED        4      1      0
  SORT1 WILD-TYPE     62     64     14
D97V1, multiclass
        clus
vv       SORT1 MUTATED SORT1 WILD-TYPE
  CLUS_1             4              62
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORT1 MUTATED        1      2      0      2
  SORT1 WILD-TYPE     37     27     45     32
D97V2, multiclass
        clus
vv       SORT1 MUTATED SORT1 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             2              27
  CLUS_3             0              45
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SORT1 MUTATED        1      0      1      0      2
  SORT1 WILD-TYPE     33     16     10     11     11
D97V3, multiclass
        clus
vv       SORT1 MUTATED SORT1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SORT1 MUTATED        0      1      0      0      0      1      2
  SORT1 WILD-TYPE     12     16     21      9      6     13      4
D97V4, multiclass
        clus
vv       SORT1 MUTATED SORT1 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SORT1 MUTATED        1      3      1
  SORT1 WILD-TYPE     70     40     31
D97V5, multiclass
        clus
vv       SORT1 MUTATED SORT1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             3              40
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SORT1 MUTATED        3      1      1
  SORT1 WILD-TYPE     64     62     15
D97V6, multiclass
        clus
vv       SORT1 MUTATED SORT1 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             1              62
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORT1 MUTATED        1      3      1      0
  SORT1 WILD-TYPE     61     33     27     20
D97V7, multiclass
        clus
vv       SORT1 MUTATED SORT1 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             3              33
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SORT1 MUTATED        2      2      1
  SORT1 WILD-TYPE     87     33     21
D97V8, multiclass
        clus
vv       SORT1 MUTATED SORT1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2              33
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SORT1 MUTATED        2      1      2
  SORT1 WILD-TYPE     60     50     29
D97V9, multiclass
        clus
vv       SORT1 MUTATED SORT1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              50
  CLUS_3             2              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SORT1 MUTATED        0      4      1
  SORT1 WILD-TYPE     75     41     23
D97V10, multiclass
        clus
vv       SORT1 MUTATED SORT1 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             4              41
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = SSBP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        1      2      0
  SSBP3 WILD-TYPE     65     63     14
D98V1, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSBP3 MUTATED        2      0      0      1
  SSBP3 WILD-TYPE     36     29     45     33
D98V2, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             0              45
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SSBP3 MUTATED        2      0      0      0      0
  SSBP3 WILD-TYPE     32     16     11     11     13
D98V3, multiclass
[1] "Remove cluster labels:" "SSBP3 MUTATED"         
clus
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SSBP3 MUTATED        0      0      0      0      0      1      1
  SSBP3 WILD-TYPE     12     17     21      9      6     13      5
D98V4, multiclass
[1] "Remove cluster labels:" "SSBP3 MUTATED"         
clus
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        1      0      2
  SSBP3 WILD-TYPE     70     43     30
D98V5, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             0              43
  CLUS_3             2              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      2      1
  SSBP3 WILD-TYPE     67     61     15
D98V6, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             2              61
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSBP3 MUTATED        1      0      0      2
  SSBP3 WILD-TYPE     61     36     28     18
D98V7, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             0              36
  CLUS_3             0              28
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        2      0      1
  SSBP3 WILD-TYPE     87     35     21
D98V8, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             0              35
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        1      1      1
  SSBP3 WILD-TYPE     61     50     30
D98V9, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              50
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        3      0      0
  SSBP3 WILD-TYPE     72     45     24
D98V10, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             0              45
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = GPSM2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM2 MUTATED        1      2      0
  GPSM2 WILD-TYPE     65     63     14
D99V1, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM2 MUTATED        1      0      1      1
  GPSM2 WILD-TYPE     37     29     44     33
D99V2, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPSM2 MUTATED        1      1      0      0      1
  GPSM2 WILD-TYPE     33     15     11     11     12
D99V3, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              15
  CLUS_3             0              11
  CLUS_4             0              11
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPSM2 MUTATED        0      1      1      0      0      1      0
  GPSM2 WILD-TYPE     12     16     20      9      6     13      6
D99V4, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             0               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM2 MUTATED        3      0      0
  GPSM2 WILD-TYPE     68     43     32
D99V5, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              43
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM2 MUTATED        2      1      0
  GPSM2 WILD-TYPE     65     62     16
D99V6, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              62
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM2 MUTATED        3      0      0      0
  GPSM2 WILD-TYPE     59     36     28     20
D99V7, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              36
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM2 MUTATED        3      0      0
  GPSM2 WILD-TYPE     86     35     22
D99V8, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM2 MUTATED        3      0      0
  GPSM2 WILD-TYPE     59     51     31
D99V9, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              51
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM2 MUTATED        3      0      0
  GPSM2 WILD-TYPE     72     45     24
D99V10, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             0              45
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(100) Variable = EEF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEF2 MUTATED        3      2      0
  EEF2 WILD-TYPE     63     63     14
D100V1, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            3             63
  CLUS_2            2             63
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF2 MUTATED        2      0      1      2
  EEF2 WILD-TYPE     36     29     44     32
D100V2, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            2             36
  CLUS_2            0             29
  CLUS_3            1             44
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2 MUTATED        1      1      1      1      0
  EEF2 WILD-TYPE     33     15     10     10     13
D100V3, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            1             15
  CLUS_3            1             10
  CLUS_4            1             10
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EEF2 MUTATED        0      1      2      0      0      0      1
  EEF2 WILD-TYPE     12     16     19      9      6     14      5
D100V4, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            0             12
  CLUS_2            1             16
  CLUS_3            2             19
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            0             14
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEF2 MUTATED        2      3      0
  EEF2 WILD-TYPE     69     40     32
D100V5, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            3             40
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEF2 MUTATED        5      0      0
  EEF2 WILD-TYPE     62     63     16
D100V6, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            5             62
  CLUS_2            0             63
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF2 MUTATED        2      2      0      1
  EEF2 WILD-TYPE     60     34     28     19
D100V7, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            2             34
  CLUS_3            0             28
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEF2 MUTATED        2      2      1
  EEF2 WILD-TYPE     87     33     21
D100V8, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2             33
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEF2 MUTATED        3      0      2
  EEF2 WILD-TYPE     59     51     29
D100V9, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            0             51
  CLUS_3            2             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEF2 MUTATED        1      3      1
  EEF2 WILD-TYPE     74     42     23
D100V10, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            1             74
  CLUS_2            3             42
  CLUS_3            1             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(101) Variable = ZACN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZACN MUTATED        2      0      1
  ZACN WILD-TYPE     64     65     13
D101V1, multiclass
        clus
vv       ZACN MUTATED ZACN WILD-TYPE
  CLUS_1            2             64
  CLUS_2            0             65
  CLUS_3            1             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZACN MUTATED        0      0      1      2
  ZACN WILD-TYPE     38     29     44     32
D101V2, multiclass
        clus
vv       ZACN MUTATED ZACN WILD-TYPE
  CLUS_1            0             38
  CLUS_2            0             29
  CLUS_3            1             44
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZACN MUTATED        1      0      1      1      0
  ZACN WILD-TYPE     33     16     10     10     13
D101V3, multiclass
        clus
vv       ZACN MUTATED ZACN WILD-TYPE
  CLUS_1            1             33
  CLUS_2            0             16
  CLUS_3            1             10
  CLUS_4            1             10
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZACN MUTATED        0      0      2      1      0      0      0
  ZACN WILD-TYPE     12     17     19      8      6     14      6
D101V4, multiclass
        clus
vv       ZACN MUTATED ZACN WILD-TYPE
  CLUS_1            0             12
  CLUS_2            0             17
  CLUS_3            2             19
  CLUS_4            1              8
  CLUS_5            0              6
  CLUS_6            0             14
  CLUS_7            0              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZACN MUTATED        1      1      1
  ZACN WILD-TYPE     70     42     31
D101V5, multiclass
        clus
vv       ZACN MUTATED ZACN WILD-TYPE
  CLUS_1            1             70
  CLUS_2            1             42
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZACN MUTATED        1      1      1
  ZACN WILD-TYPE     66     62     15
D101V6, multiclass
        clus
vv       ZACN MUTATED ZACN WILD-TYPE
  CLUS_1            1             66
  CLUS_2            1             62
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZACN MUTATED        1      1      0      1
  ZACN WILD-TYPE     61     35     28     19
D101V7, multiclass
        clus
vv       ZACN MUTATED ZACN WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             35
  CLUS_3            0             28
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZACN MUTATED        1      1      1
  ZACN WILD-TYPE     88     34     21
D101V8, multiclass
        clus
vv       ZACN MUTATED ZACN WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1             34
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZACN MUTATED        1      1      1
  ZACN WILD-TYPE     61     50     30
D101V9, multiclass
        clus
vv       ZACN MUTATED ZACN WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             50
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZACN MUTATED        1      1      1
  ZACN WILD-TYPE     74     44     23
D101V10, multiclass
        clus
vv       ZACN MUTATED ZACN WILD-TYPE
  CLUS_1            1             74
  CLUS_2            1             44
  CLUS_3            1             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(102) Variable = ZMYM2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        1      1      1
  ZMYM2 WILD-TYPE     65     64     13
D102V1, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        2      0      1      0
  ZMYM2 WILD-TYPE     36     29     44     34
D102V2, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM2 MUTATED        1      0      1      0      1
  ZMYM2 WILD-TYPE     33     16     10     11     12
D102V3, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMYM2 MUTATED        0      0      0      0      0      1      2
  ZMYM2 WILD-TYPE     12     17     21      9      6     13      4
D102V4, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        2      1      0
  ZMYM2 WILD-TYPE     69     42     32
D102V5, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        1      2      0
  ZMYM2 WILD-TYPE     66     61     16
D102V6, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        1      1      1      0
  ZMYM2 WILD-TYPE     61     35     27     20
D102V7, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        3      0      0
  ZMYM2 WILD-TYPE     86     35     22
D102V8, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        2      0      0
  ZMYM2 WILD-TYPE     60     51     31
D102V9, multiclass
[1] "Remove cluster labels:" "ZMYM2 MUTATED"         
clus
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              2             142 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-2J-AABU      TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9I7 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A44H 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-AAPS 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-FB-AAPU      TCGA-FB-AAPY      TCGA-FB-AAPZ      TCGA-FB-AAQ0 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ2      TCGA-FB-AAQ3      TCGA-H6-8124 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4      TCGA-HV-A5A5 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HV-A7OL      TCGA-HV-AA8V      TCGA-HV-AA8X 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-7926 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8315 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-8317      TCGA-HZ-8519      TCGA-HZ-8636      TCGA-HZ-8637 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A49I      TCGA-HZ-A4BH 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-A4BK      TCGA-HZ-A77O      TCGA-HZ-A77P      TCGA-HZ-A77Q 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ      TCGA-IB-7644 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG      TCGA-IB-A7LX 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-AAUT      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-S4-A8RM      TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-YY-A8LH      TCGA-Z5-AAPL 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        1      1      0
  ZMYM2 WILD-TYPE     74     44     24
D102V10, multiclass
[1] "Remove cluster labels:" "ZMYM2 MUTATED"         
clus
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              2             142 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-2J-AABU      TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9I7 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A44H 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-AAPS 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-FB-AAPU      TCGA-FB-AAPY      TCGA-FB-AAPZ      TCGA-FB-AAQ0 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ2      TCGA-FB-AAQ3      TCGA-H6-8124 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4      TCGA-HV-A5A5 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HV-A7OL      TCGA-HV-AA8V      TCGA-HV-AA8X 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-7926 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8315 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-8317      TCGA-HZ-8519      TCGA-HZ-8636      TCGA-HZ-8637 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A49I      TCGA-HZ-A4BH 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-A4BK      TCGA-HZ-A77O      TCGA-HZ-A77P      TCGA-HZ-A77Q 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ      TCGA-IB-7644 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG      TCGA-IB-A7LX 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-IB-AAUT      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-S4-A8RM      TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 
     TCGA-YY-A8LH      TCGA-Z5-AAPL 
"ZMYM2 WILD-TYPE" "ZMYM2 WILD-TYPE" 

Clustering(103) Variable = GSN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GSN MUTATED        2      2      0
  GSN WILD-TYPE     64     63     14
D103V1, multiclass
        clus
vv       GSN MUTATED GSN WILD-TYPE
  CLUS_1           2            64
  CLUS_2           2            63
  CLUS_3           0            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSN MUTATED        1      1      1      1
  GSN WILD-TYPE     37     28     44     33
D103V2, multiclass
        clus
vv       GSN MUTATED GSN WILD-TYPE
  CLUS_1           1            37
  CLUS_2           1            28
  CLUS_3           1            44
  CLUS_4           1            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GSN MUTATED        0      1      1      0      1
  GSN WILD-TYPE     34     15     10     11     12
D103V3, multiclass
        clus
vv       GSN MUTATED GSN WILD-TYPE
  CLUS_1           0            34
  CLUS_2           1            15
  CLUS_3           1            10
  CLUS_4           0            11
  CLUS_5           1            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GSN MUTATED        0      1      0      0      0      1      1
  GSN WILD-TYPE     12     16     21      9      6     13      5
D103V4, multiclass
        clus
vv       GSN MUTATED GSN WILD-TYPE
  CLUS_1           0            12
  CLUS_2           1            16
  CLUS_3           0            21
  CLUS_4           0             9
  CLUS_5           0             6
  CLUS_6           1            13
  CLUS_7           1             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GSN MUTATED        2      1      1
  GSN WILD-TYPE     69     42     31
D103V5, multiclass
        clus
vv       GSN MUTATED GSN WILD-TYPE
  CLUS_1           2            69
  CLUS_2           1            42
  CLUS_3           1            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GSN MUTATED        2      2      0
  GSN WILD-TYPE     65     61     16
D103V6, multiclass
        clus
vv       GSN MUTATED GSN WILD-TYPE
  CLUS_1           2            65
  CLUS_2           2            61
  CLUS_3           0            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSN MUTATED        2      2      0      0
  GSN WILD-TYPE     60     34     28     20
D103V7, multiclass
        clus
vv       GSN MUTATED GSN WILD-TYPE
  CLUS_1           2            60
  CLUS_2           2            34
  CLUS_3           0            28
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GSN MUTATED        3      1      0
  GSN WILD-TYPE     86     34     22
D103V8, multiclass
        clus
vv       GSN MUTATED GSN WILD-TYPE
  CLUS_1           3            86
  CLUS_2           1            34
  CLUS_3           0            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GSN MUTATED        3      0      1
  GSN WILD-TYPE     59     51     30
D103V9, multiclass
        clus
vv       GSN MUTATED GSN WILD-TYPE
  CLUS_1           3            59
  CLUS_2           0            51
  CLUS_3           1            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GSN MUTATED        2      2      0
  GSN WILD-TYPE     73     43     24
D103V10, multiclass
        clus
vv       GSN MUTATED GSN WILD-TYPE
  CLUS_1           2            73
  CLUS_2           2            43
  CLUS_3           0            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(104) Variable = TGFBR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        5      3      0
  TGFBR1 WILD-TYPE     61     62     14
D104V1, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              5               61
  CLUS_2              3               62
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR1 MUTATED        2      2      2      2
  TGFBR1 WILD-TYPE     36     27     43     32
D104V2, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              2               27
  CLUS_3              2               43
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR1 MUTATED        4      1      1      0      0
  TGFBR1 WILD-TYPE     30     15     10     11     13
D104V3, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              4               30
  CLUS_2              1               15
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGFBR1 MUTATED        2      1      1      0      0      1      1
  TGFBR1 WILD-TYPE     10     16     20      9      6     13      5
D104V4, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              2               10
  CLUS_2              1               16
  CLUS_3              1               20
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        2      4      2
  TGFBR1 WILD-TYPE     69     39     30
D104V5, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              4               39
  CLUS_3              2               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        5      2      1
  TGFBR1 WILD-TYPE     62     61     15
D104V6, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              5               62
  CLUS_2              2               61
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR1 MUTATED        3      3      1      1
  TGFBR1 WILD-TYPE     59     33     27     19
D104V7, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              3               33
  CLUS_3              1               27
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        5      2      1
  TGFBR1 WILD-TYPE     84     33     21
D104V8, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              2               33
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        3      3      2
  TGFBR1 WILD-TYPE     59     48     29
D104V9, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              3               48
  CLUS_3              2               29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        4      2      2
  TGFBR1 WILD-TYPE     71     43     22
D104V10, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              4               71
  CLUS_2              2               43
  CLUS_3              2               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(105) Variable = MLPH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLPH MUTATED        2      0      0
  MLPH WILD-TYPE     64     65     14
D105V1, multiclass
[1] "Remove cluster labels:" "MLPH MUTATED"          
clus
  MLPH MUTATED MLPH WILD-TYPE 
             2            143 
    TCGA-2J-AAB1     TCGA-2J-AAB4     TCGA-2J-AAB6     TCGA-2J-AAB8 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-2J-AAB9     TCGA-2J-AABA     TCGA-2J-AABE     TCGA-2J-AABF 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO     TCGA-2J-AABR 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-2J-AABU     TCGA-2J-AABV     TCGA-2L-AAQA     TCGA-2L-AAQE 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL     TCGA-3A-A9I5 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-3A-A9I7     TCGA-3A-A9I9     TCGA-3A-A9IB     TCGA-3A-A9IC 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-3A-A9J0     TCGA-3E-AAAY     TCGA-3E-AAAZ     TCGA-F2-6879 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-F2-A7TX     TCGA-F2-A8YN 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-FB-A4P5     TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-FB-AAPU     TCGA-FB-AAPY     TCGA-FB-AAPZ     TCGA-FB-AAQ0 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ2     TCGA-FB-AAQ3     TCGA-H6-8124 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-H6-A45N     TCGA-HV-A5A3     TCGA-HV-A5A4     TCGA-HV-A5A5 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HV-A7OL     TCGA-HV-AA8V     TCGA-HV-AA8X 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925     TCGA-HZ-7926 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-8315     TCGA-HZ-8317     TCGA-HZ-8519     TCGA-HZ-8636 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-8637     TCGA-HZ-A49G     TCGA-HZ-A49H     TCGA-HZ-A49I 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-HZ-A77O     TCGA-HZ-A77P 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-A77Q     TCGA-HZ-A8P0     TCGA-HZ-A8P1     TCGA-HZ-A9TJ 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7645     TCGA-IB-7646     TCGA-IB-7647 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-7891     TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A6UG 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUQ     TCGA-IB-AAUR 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUT     TCGA-IB-AAUU     TCGA-LB-A7SX 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-M8-A5N4     TCGA-OE-A75W 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-A7B8 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-RB-AA9M     TCGA-S4-A8RM     TCGA-S4-A8RO     TCGA-S4-A8RP 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-US-A774     TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-US-A77G     TCGA-XD-AAUG     TCGA-XD-AAUH     TCGA-XD-AAUI 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-XD-AAUL     TCGA-XN-A8T3     TCGA-XN-A8T5     TCGA-YB-A89D 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLPH MUTATED        1      1      0      1
  MLPH WILD-TYPE     37     28     45     33
D105V2, multiclass
        clus
vv       MLPH MUTATED MLPH WILD-TYPE
  CLUS_1            1             37
  CLUS_2            1             28
  CLUS_3            0             45
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLPH MUTATED        1      0      1      0      0
  MLPH WILD-TYPE     33     16     10     11     13
D105V3, multiclass
[1] "Remove cluster labels:" "MLPH MUTATED"          
clus
  MLPH MUTATED MLPH WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A545 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N     TCGA-HV-A5A6 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925     TCGA-HZ-8001 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7652 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-M8-A5N4 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM     TCGA-S4-A8RO 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776     TCGA-US-A779 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL     TCGA-XN-A8T5 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLPH MUTATED        0      0      1      0      0      0      1
  MLPH WILD-TYPE     12     17     20      9      6     14      5
D105V4, multiclass
[1] "Remove cluster labels:" "MLPH MUTATED"          
clus
  MLPH MUTATED MLPH WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A545 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N     TCGA-HV-A5A6 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925     TCGA-HZ-8001 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7652 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-M8-A5N4 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM     TCGA-S4-A8RO 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776     TCGA-US-A779 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL     TCGA-XN-A8T5 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"MLPH WILD-TYPE" "MLPH WILD-TYPE" "MLPH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLPH MUTATED        0      2      1
  MLPH WILD-TYPE     71     41     31
D105V5, multiclass
        clus
vv       MLPH MUTATED MLPH WILD-TYPE
  CLUS_1            0             71
  CLUS_2            2             41
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLPH MUTATED        3      0      0
  MLPH WILD-TYPE     64     63     16
D105V6, multiclass
        clus
vv       MLPH MUTATED MLPH WILD-TYPE
  CLUS_1            3             64
  CLUS_2            0             63
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLPH MUTATED        0      2      1      0
  MLPH WILD-TYPE     62     34     27     20
D105V7, multiclass
        clus
vv       MLPH MUTATED MLPH WILD-TYPE
  CLUS_1            0             62
  CLUS_2            2             34
  CLUS_3            1             27
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLPH MUTATED        1      2      0
  MLPH WILD-TYPE     88     33     22
D105V8, multiclass
        clus
vv       MLPH MUTATED MLPH WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2             33
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLPH MUTATED        1      2      0
  MLPH WILD-TYPE     61     49     31
D105V9, multiclass
        clus
vv       MLPH MUTATED MLPH WILD-TYPE
  CLUS_1            1             61
  CLUS_2            2             49
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLPH MUTATED        0      2      1
  MLPH WILD-TYPE     75     43     23
D105V10, multiclass
        clus
vv       MLPH MUTATED MLPH WILD-TYPE
  CLUS_1            0             75
  CLUS_2            2             43
  CLUS_3            1             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(106) Variable = UBXN4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBXN4 MUTATED        2      1      0
  UBXN4 WILD-TYPE     64     64     14
D106V1, multiclass
        clus
vv       UBXN4 MUTATED UBXN4 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBXN4 MUTATED        1      0      0      2
  UBXN4 WILD-TYPE     37     29     45     32
D106V2, multiclass
        clus
vv       UBXN4 MUTATED UBXN4 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             0              29
  CLUS_3             0              45
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBXN4 MUTATED        0      1      1      0      1
  UBXN4 WILD-TYPE     34     15     10     11     12
D106V3, multiclass
        clus
vv       UBXN4 MUTATED UBXN4 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UBXN4 MUTATED        0      1      0      0      0      1      1
  UBXN4 WILD-TYPE     12     16     21      9      6     13      5
D106V4, multiclass
        clus
vv       UBXN4 MUTATED UBXN4 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBXN4 MUTATED        2      1      0
  UBXN4 WILD-TYPE     69     42     32
D106V5, multiclass
        clus
vv       UBXN4 MUTATED UBXN4 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBXN4 MUTATED        1      2      0
  UBXN4 WILD-TYPE     66     61     16
D106V6, multiclass
        clus
vv       UBXN4 MUTATED UBXN4 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBXN4 MUTATED        1      1      1      0
  UBXN4 WILD-TYPE     61     35     27     20
D106V7, multiclass
        clus
vv       UBXN4 MUTATED UBXN4 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBXN4 MUTATED        3      0      0
  UBXN4 WILD-TYPE     86     35     22
D106V8, multiclass
        clus
vv       UBXN4 MUTATED UBXN4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBXN4 MUTATED        2      1      0
  UBXN4 WILD-TYPE     60     50     31
D106V9, multiclass
        clus
vv       UBXN4 MUTATED UBXN4 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBXN4 MUTATED        1      2      0
  UBXN4 WILD-TYPE     74     43     24
D106V10, multiclass
        clus
vv       UBXN4 MUTATED UBXN4 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(107) Variable = KCNE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNE1 MUTATED        3      1      0
  KCNE1 WILD-TYPE     63     64     14
D107V1, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNE1 MUTATED        1      0      1      2
  KCNE1 WILD-TYPE     37     29     44     32
D107V2, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNE1 MUTATED        1      2      1      0      0
  KCNE1 WILD-TYPE     33     14     10     11     13
D107V3, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             2              14
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCNE1 MUTATED        0      2      0      0      0      0      2
  KCNE1 WILD-TYPE     12     15     21      9      6     14      4
D107V4, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             2              15
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNE1 MUTATED        3      1      0
  KCNE1 WILD-TYPE     68     42     32
D107V5, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNE1 MUTATED        1      3      0
  KCNE1 WILD-TYPE     66     60     16
D107V6, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNE1 MUTATED        1      1      2      0
  KCNE1 WILD-TYPE     61     35     26     20
D107V7, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             2              26
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNE1 MUTATED        4      0      0
  KCNE1 WILD-TYPE     85     35     22
D107V8, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNE1 MUTATED        3      1      0
  KCNE1 WILD-TYPE     59     50     31
D107V9, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNE1 MUTATED        3      1      0
  KCNE1 WILD-TYPE     72     44     24
D107V10, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(108) Variable = RTTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTTN MUTATED        4      1      0
  RTTN WILD-TYPE     62     64     14
D108V1, multiclass
        clus
vv       RTTN MUTATED RTTN WILD-TYPE
  CLUS_1            4             62
  CLUS_2            1             64
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTTN MUTATED        2      0      1      2
  RTTN WILD-TYPE     36     29     44     32
D108V2, multiclass
        clus
vv       RTTN MUTATED RTTN WILD-TYPE
  CLUS_1            2             36
  CLUS_2            0             29
  CLUS_3            1             44
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTTN MUTATED        1      2      1      0      0
  RTTN WILD-TYPE     33     14     10     11     13
D108V3, multiclass
        clus
vv       RTTN MUTATED RTTN WILD-TYPE
  CLUS_1            1             33
  CLUS_2            2             14
  CLUS_3            1             10
  CLUS_4            0             11
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RTTN MUTATED        0      1      1      0      0      1      1
  RTTN WILD-TYPE     12     16     20      9      6     13      5
D108V4, multiclass
        clus
vv       RTTN MUTATED RTTN WILD-TYPE
  CLUS_1            0             12
  CLUS_2            1             16
  CLUS_3            1             20
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            1             13
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTTN MUTATED        3      2      0
  RTTN WILD-TYPE     68     41     32
D108V5, multiclass
        clus
vv       RTTN MUTATED RTTN WILD-TYPE
  CLUS_1            3             68
  CLUS_2            2             41
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTTN MUTATED        2      3      0
  RTTN WILD-TYPE     65     60     16
D108V6, multiclass
        clus
vv       RTTN MUTATED RTTN WILD-TYPE
  CLUS_1            2             65
  CLUS_2            3             60
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTTN MUTATED        2      1      2      0
  RTTN WILD-TYPE     60     35     26     20
D108V7, multiclass
        clus
vv       RTTN MUTATED RTTN WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             35
  CLUS_3            2             26
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTTN MUTATED        5      0      0
  RTTN WILD-TYPE     84     35     22
D108V8, multiclass
        clus
vv       RTTN MUTATED RTTN WILD-TYPE
  CLUS_1            5             84
  CLUS_2            0             35
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTTN MUTATED        2      1      2
  RTTN WILD-TYPE     60     50     29
D108V9, multiclass
        clus
vv       RTTN MUTATED RTTN WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             50
  CLUS_3            2             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTTN MUTATED        4      1      0
  RTTN WILD-TYPE     71     44     24
D108V10, multiclass
        clus
vv       RTTN MUTATED RTTN WILD-TYPE
  CLUS_1            4             71
  CLUS_2            1             44
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(109) Variable = FAM8A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        2      2      0
  FAM8A1 WILD-TYPE     64     63     14
D109V1, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM8A1 MUTATED        0      2      1      1
  FAM8A1 WILD-TYPE     38     27     44     33
D109V2, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              0               38
  CLUS_2              2               27
  CLUS_3              1               44
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM8A1 MUTATED        0      2      0      1      0
  FAM8A1 WILD-TYPE     34     14     11     10     13
D109V3, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              2               14
  CLUS_3              0               11
  CLUS_4              1               10
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM8A1 MUTATED        0      2      1      0      0      0      0
  FAM8A1 WILD-TYPE     12     15     20      9      6     14      6
D109V4, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              2               15
  CLUS_3              1               20
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              0                6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        2      2      0
  FAM8A1 WILD-TYPE     69     41     32
D109V5, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               41
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        2      2      0
  FAM8A1 WILD-TYPE     65     61     16
D109V6, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              2               61
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM8A1 MUTATED        2      1      0      1
  FAM8A1 WILD-TYPE     60     35     28     19
D109V7, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               35
  CLUS_3              0               28
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        2      2      0
  FAM8A1 WILD-TYPE     87     33     22
D109V8, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              2               33
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        2      1      1
  FAM8A1 WILD-TYPE     60     50     30
D109V9, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               50
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        2      2      0
  FAM8A1 WILD-TYPE     73     43     24
D109V10, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              2               73
  CLUS_2              2               43
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(110) Variable = ACTRT2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTRT2 MUTATED        2      1      0
  ACTRT2 WILD-TYPE     64     64     14
D110V1, multiclass
        clus
vv       ACTRT2 MUTATED ACTRT2 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              1               64
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTRT2 MUTATED        1      1      0      1
  ACTRT2 WILD-TYPE     37     28     45     33
D110V2, multiclass
        clus
vv       ACTRT2 MUTATED ACTRT2 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              1               28
  CLUS_3              0               45
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTRT2 MUTATED        1      1      1      0      0
  ACTRT2 WILD-TYPE     33     15     10     11     13
D110V3, multiclass
        clus
vv       ACTRT2 MUTATED ACTRT2 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              1               15
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACTRT2 MUTATED        0      1      1      1      0      0      0
  ACTRT2 WILD-TYPE     12     16     20      8      6     14      6
D110V4, multiclass
        clus
vv       ACTRT2 MUTATED ACTRT2 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              1               16
  CLUS_3              1               20
  CLUS_4              1                8
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              0                6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTRT2 MUTATED        2      0      1
  ACTRT2 WILD-TYPE     69     43     31
D110V5, multiclass
        clus
vv       ACTRT2 MUTATED ACTRT2 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               43
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTRT2 MUTATED        1      1      1
  ACTRT2 WILD-TYPE     66     62     15
D110V6, multiclass
        clus
vv       ACTRT2 MUTATED ACTRT2 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              1               62
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTRT2 MUTATED        1      0      1      1
  ACTRT2 WILD-TYPE     61     36     27     19
D110V7, multiclass
        clus
vv       ACTRT2 MUTATED ACTRT2 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              0               36
  CLUS_3              1               27
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTRT2 MUTATED        2      0      1
  ACTRT2 WILD-TYPE     87     35     21
D110V8, multiclass
        clus
vv       ACTRT2 MUTATED ACTRT2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              0               35
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTRT2 MUTATED        1      2      0
  ACTRT2 WILD-TYPE     61     49     31
D110V9, multiclass
        clus
vv       ACTRT2 MUTATED ACTRT2 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              2               49
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTRT2 MUTATED        2      0      1
  ACTRT2 WILD-TYPE     73     45     23
D110V10, multiclass
        clus
vv       ACTRT2 MUTATED ACTRT2 WILD-TYPE
  CLUS_1              2               73
  CLUS_2              0               45
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(111) Variable = DNAH7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        5      1      1
  DNAH7 WILD-TYPE     61     64     13
D111V1, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             5              61
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED        1      1      2      3
  DNAH7 WILD-TYPE     37     28     43     31
D111V2, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             1              28
  CLUS_3             2              43
  CLUS_4             3              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED        0      3      1      1      0
  DNAH7 WILD-TYPE     34     13     10     10     13
D111V3, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             3              13
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAH7 MUTATED        0      3      1      0      0      0      1
  DNAH7 WILD-TYPE     12     14     20      9      6     14      5
D111V4, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             3              14
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        5      1      1
  DNAH7 WILD-TYPE     66     42     31
D111V5, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              42
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        2      4      1
  DNAH7 WILD-TYPE     65     59     15
D111V6, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             4              59
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED        2      1      3      1
  DNAH7 WILD-TYPE     60     35     25     19
D111V7, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              35
  CLUS_3             3              25
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        6      0      1
  DNAH7 WILD-TYPE     83     35     21
D111V8, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             6              83
  CLUS_2             0              35
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        4      2      1
  DNAH7 WILD-TYPE     58     49     30
D111V9, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             2              49
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        5      1      1
  DNAH7 WILD-TYPE     70     44     23
D111V10, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             5              70
  CLUS_2             1              44
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(112) Variable = OR1N2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1N2 MUTATED        4      1      0
  OR1N2 WILD-TYPE     62     64     14
D112V1, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             4              62
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1N2 MUTATED        2      0      1      2
  OR1N2 WILD-TYPE     36     29     44     32
D112V2, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR1N2 MUTATED        2      0      1      2      0
  OR1N2 WILD-TYPE     32     16     10      9     13
D112V3, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             2               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR1N2 MUTATED        1      0      2      0      0      1      1
  OR1N2 WILD-TYPE     11     17     19      9      6     13      5
D112V4, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             1              11
  CLUS_2             0              17
  CLUS_3             2              19
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1N2 MUTATED        2      1      2
  OR1N2 WILD-TYPE     69     42     30
D112V5, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             2              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1N2 MUTATED        1      2      2
  OR1N2 WILD-TYPE     66     61     14
D112V6, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             2              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1N2 MUTATED        1      1      2      1
  OR1N2 WILD-TYPE     61     35     26     19
D112V7, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             2              26
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1N2 MUTATED        3      0      2
  OR1N2 WILD-TYPE     86     35     20
D112V8, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             2              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1N2 MUTATED        2      3      0
  OR1N2 WILD-TYPE     60     48     31
D112V9, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             3              48
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1N2 MUTATED        2      1      2
  OR1N2 WILD-TYPE     73     44     22
D112V10, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             1              44
  CLUS_3             2              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(113) Variable = BRD8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED        3      0      0
  BRD8 WILD-TYPE     63     65     14
D113V1, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            3             63
  CLUS_2            0             65
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD8 MUTATED        2      0      0      1
  BRD8 WILD-TYPE     36     29     45     33
D113V2, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            2             36
  CLUS_2            0             29
  CLUS_3            0             45
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRD8 MUTATED        0      1      1      0      0
  BRD8 WILD-TYPE     34     15     10     11     13
D113V3, multiclass
[1] "Remove cluster labels:" "BRD8 MUTATED"          
clus
  BRD8 MUTATED BRD8 WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-8001 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7652 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-M8-A5N4 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM     TCGA-S4-A8RO 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776     TCGA-US-A779 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL     TCGA-XN-A8T5 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRD8 MUTATED        0      1      0      0      0      0      1
  BRD8 WILD-TYPE     12     16     21      9      6     14      5
D113V4, multiclass
[1] "Remove cluster labels:" "BRD8 MUTATED"          
clus
  BRD8 MUTATED BRD8 WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-8001 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7652 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-M8-A5N4 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM     TCGA-S4-A8RO 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776     TCGA-US-A779 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL     TCGA-XN-A8T5 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"BRD8 WILD-TYPE" "BRD8 WILD-TYPE" "BRD8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED        2      1      0
  BRD8 WILD-TYPE     69     42     32
D113V5, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             42
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED        2      1      0
  BRD8 WILD-TYPE     65     62     16
D113V6, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            1             62
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD8 MUTATED        0      1      2      0
  BRD8 WILD-TYPE     62     35     26     20
D113V7, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            0             62
  CLUS_2            1             35
  CLUS_3            2             26
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED        3      0      0
  BRD8 WILD-TYPE     86     35     22
D113V8, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            0             35
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED        1      2      0
  BRD8 WILD-TYPE     61     49     31
D113V9, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            2             49
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED        1      2      0
  BRD8 WILD-TYPE     74     43     24
D113V10, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            1             74
  CLUS_2            2             43
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(114) Variable = MIPEP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIPEP MUTATED        0      2      1
  MIPEP WILD-TYPE     66     63     13
D114V1, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             0              66
  CLUS_2             2              63
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPEP MUTATED        1      0      1      1
  MIPEP WILD-TYPE     37     29     44     33
D114V2, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             1              37
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MIPEP MUTATED        1      0      0      0      2
  MIPEP WILD-TYPE     33     16     11     11     11
D114V3, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             0              11
  CLUS_4             0              11
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MIPEP MUTATED        0      0      0      0      0      2      1
  MIPEP WILD-TYPE     12     17     21      9      6     12      5
D114V4, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             2              12
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIPEP MUTATED        3      0      0
  MIPEP WILD-TYPE     68     43     32
D114V5, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              43
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIPEP MUTATED        0      3      0
  MIPEP WILD-TYPE     67     60     16
D114V6, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             0              67
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPEP MUTATED        2      0      1      0
  MIPEP WILD-TYPE     60     36     27     20
D114V7, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              36
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIPEP MUTATED        3      0      0
  MIPEP WILD-TYPE     86     35     22
D114V8, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIPEP MUTATED        2      0      0
  MIPEP WILD-TYPE     60     51     31
D114V9, multiclass
[1] "Remove cluster labels:" "MIPEP MUTATED"         
clus
  MIPEP MUTATED MIPEP WILD-TYPE 
              2             142 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-2J-AABU      TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9I7 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A44H 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-AAPS 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-FB-AAPU      TCGA-FB-AAPY      TCGA-FB-AAPZ      TCGA-FB-AAQ0 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ2      TCGA-FB-AAQ3      TCGA-H6-8124 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4      TCGA-HV-A5A5 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HV-A7OL      TCGA-HV-AA8V      TCGA-HV-AA8X 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-7926 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8315 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-8317      TCGA-HZ-8519      TCGA-HZ-8636      TCGA-HZ-8637 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A49I      TCGA-HZ-A4BH 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-A4BK      TCGA-HZ-A77O      TCGA-HZ-A77P      TCGA-HZ-A77Q 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ      TCGA-IB-7644 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG      TCGA-IB-A7LX 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-AAUT      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-S4-A8RM      TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-YY-A8LH      TCGA-Z5-AAPL 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIPEP MUTATED        1      1      0
  MIPEP WILD-TYPE     74     44     24
D114V10, multiclass
[1] "Remove cluster labels:" "MIPEP MUTATED"         
clus
  MIPEP MUTATED MIPEP WILD-TYPE 
              2             142 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-2J-AABU      TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9I7 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A44H 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-AAPS 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-FB-AAPU      TCGA-FB-AAPY      TCGA-FB-AAPZ      TCGA-FB-AAQ0 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ2      TCGA-FB-AAQ3      TCGA-H6-8124 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4      TCGA-HV-A5A5 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HV-A7OL      TCGA-HV-AA8V      TCGA-HV-AA8X 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-7926 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8315 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-8317      TCGA-HZ-8519      TCGA-HZ-8636      TCGA-HZ-8637 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A49I      TCGA-HZ-A4BH 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-A4BK      TCGA-HZ-A77O      TCGA-HZ-A77P      TCGA-HZ-A77Q 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ      TCGA-IB-7644 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG      TCGA-IB-A7LX 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-IB-AAUT      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-S4-A8RM      TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-YY-A8LH      TCGA-Z5-AAPL 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 

Clustering(115) Variable = SIGLEC14 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        2      1      0
  SIGLEC14 WILD-TYPE     64     64     14
D115V1, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                2                 64
  CLUS_2                1                 64
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC14 MUTATED        1      1      1      0
  SIGLEC14 WILD-TYPE     37     28     44     34
D115V2, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                 37
  CLUS_2                1                 28
  CLUS_3                1                 44
  CLUS_4                0                 34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC14 MUTATED        0      0      0      0      0
  SIGLEC14 WILD-TYPE     34     16     11     11     13
D115V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SIGLEC14 MUTATED        0      0      0      0      0      0      0
  SIGLEC14 WILD-TYPE     12     17     21      9      6     14      6
D115V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        1      1      1
  SIGLEC14 WILD-TYPE     70     42     31
D115V5, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                1                 42
  CLUS_3                1                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        2      1      0
  SIGLEC14 WILD-TYPE     65     62     16
D115V6, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                2                 65
  CLUS_2                1                 62
  CLUS_3                0                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC14 MUTATED        2      0      1      0
  SIGLEC14 WILD-TYPE     60     36     27     20
D115V7, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                2                 60
  CLUS_2                0                 36
  CLUS_3                1                 27
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        2      1      0
  SIGLEC14 WILD-TYPE     87     34     22
D115V8, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                1                 34
  CLUS_3                0                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        2      1      0
  SIGLEC14 WILD-TYPE     60     50     31
D115V9, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                2                 60
  CLUS_2                1                 50
  CLUS_3                0                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        2      1      0
  SIGLEC14 WILD-TYPE     73     44     24
D115V10, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                2                 73
  CLUS_2                1                 44
  CLUS_3                0                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(116) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        4      1      2
  ARID1A WILD-TYPE     62     64     12
D116V1, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               62
  CLUS_2              1               64
  CLUS_3              2               12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        3      0      1      3
  ARID1A WILD-TYPE     35     29     44     31
D116V2, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               35
  CLUS_2              0               29
  CLUS_3              1               44
  CLUS_4              3               31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        1      0      1      0      1
  ARID1A WILD-TYPE     33     16     10     11     12
D116V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              1               33
  CLUS_2              0               16
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID1A MUTATED        1      1      0      0      0      0      1
  ARID1A WILD-TYPE     11     16     21      9      6     14      5
D116V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              1               11
  CLUS_2              1               16
  CLUS_3              0               21
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        3      2      2
  ARID1A WILD-TYPE     68     41     30
D116V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               68
  CLUS_2              2               41
  CLUS_3              2               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        2      4      1
  ARID1A WILD-TYPE     65     59     15
D116V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               65
  CLUS_2              4               59
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        2      2      3      0
  ARID1A WILD-TYPE     60     34     25     20
D116V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               60
  CLUS_2              2               34
  CLUS_3              3               25
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        4      1      2
  ARID1A WILD-TYPE     85     34     20
D116V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               85
  CLUS_2              1               34
  CLUS_3              2               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        2      3      2
  ARID1A WILD-TYPE     60     48     29
D116V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               60
  CLUS_2              3               48
  CLUS_3              2               29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        3      2      2
  ARID1A WILD-TYPE     72     43     22
D116V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               72
  CLUS_2              2               43
  CLUS_3              2               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(117) Variable = POM121 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        3      2      0
  POM121 WILD-TYPE     63     63     14
D117V1, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              3               63
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POM121 MUTATED        1      1      2      1
  POM121 WILD-TYPE     37     28     43     33
D117V2, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              1               28
  CLUS_3              2               43
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POM121 MUTATED        2      1      1      0      0
  POM121 WILD-TYPE     32     15     10     11     13
D117V3, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              1               15
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  POM121 MUTATED        0      1      2      0      0      0      1
  POM121 WILD-TYPE     12     16     19      9      6     14      5
D117V4, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              1               16
  CLUS_3              2               19
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        2      2      1
  POM121 WILD-TYPE     69     41     31
D117V5, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               41
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        3      1      1
  POM121 WILD-TYPE     64     62     15
D117V6, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              1               62
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POM121 MUTATED        1      3      0      1
  POM121 WILD-TYPE     61     33     28     19
D117V7, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              3               33
  CLUS_3              0               28
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        3      1      1
  POM121 WILD-TYPE     86     34     21
D117V8, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              1               34
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        3      1      1
  POM121 WILD-TYPE     59     50     30
D117V9, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               50
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        1      3      1
  POM121 WILD-TYPE     74     42     23
D117V10, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              3               42
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(118) Variable = LCP2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP2 MUTATED        3      0      0
  LCP2 WILD-TYPE     63     65     14
D118V1, multiclass
        clus
vv       LCP2 MUTATED LCP2 WILD-TYPE
  CLUS_1            3             63
  CLUS_2            0             65
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCP2 MUTATED        1      1      0      1
  LCP2 WILD-TYPE     37     28     45     33
D118V2, multiclass
        clus
vv       LCP2 MUTATED LCP2 WILD-TYPE
  CLUS_1            1             37
  CLUS_2            1             28
  CLUS_3            0             45
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LCP2 MUTATED        0      1      1      0      0
  LCP2 WILD-TYPE     34     15     10     11     13
D118V3, multiclass
[1] "Remove cluster labels:" "LCP2 MUTATED"          
clus
  LCP2 MUTATED LCP2 WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-8001 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7652 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-M8-A5N4 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM     TCGA-S4-A8RO 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776     TCGA-US-A779 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL     TCGA-XN-A8T5 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LCP2 MUTATED        0      1      0      0      0      0      1
  LCP2 WILD-TYPE     12     16     21      9      6     14      5
D118V4, multiclass
[1] "Remove cluster labels:" "LCP2 MUTATED"          
clus
  LCP2 MUTATED LCP2 WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-8001 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7652 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-M8-A5N4 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM     TCGA-S4-A8RO 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776     TCGA-US-A779 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL     TCGA-XN-A8T5 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"LCP2 WILD-TYPE" "LCP2 WILD-TYPE" "LCP2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP2 MUTATED        1      2      0
  LCP2 WILD-TYPE     70     41     32
D118V5, multiclass
        clus
vv       LCP2 MUTATED LCP2 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             41
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP2 MUTATED        2      1      0
  LCP2 WILD-TYPE     65     62     16
D118V6, multiclass
        clus
vv       LCP2 MUTATED LCP2 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            1             62
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCP2 MUTATED        0      2      1      0
  LCP2 WILD-TYPE     62     34     27     20
D118V7, multiclass
        clus
vv       LCP2 MUTATED LCP2 WILD-TYPE
  CLUS_1            0             62
  CLUS_2            2             34
  CLUS_3            1             27
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP2 MUTATED        2      1      0
  LCP2 WILD-TYPE     87     34     22
D118V8, multiclass
        clus
vv       LCP2 MUTATED LCP2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            1             34
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP2 MUTATED        1      2      0
  LCP2 WILD-TYPE     61     49     31
D118V9, multiclass
        clus
vv       LCP2 MUTATED LCP2 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            2             49
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCP2 MUTATED        1      1      1
  LCP2 WILD-TYPE     74     44     23
D118V10, multiclass
        clus
vv       LCP2 MUTATED LCP2 WILD-TYPE
  CLUS_1            1             74
  CLUS_2            1             44
  CLUS_3            1             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(119) Variable = L1CAM MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        4      2      0
  L1CAM WILD-TYPE     62     63     14
D119V1, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             4              62
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  L1CAM MUTATED        1      1      2      2
  L1CAM WILD-TYPE     37     28     43     32
D119V2, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             1              37
  CLUS_2             1              28
  CLUS_3             2              43
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  L1CAM MUTATED        0      2      0      2      0
  L1CAM WILD-TYPE     34     14     11      9     13
D119V3, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             0              34
  CLUS_2             2              14
  CLUS_3             0              11
  CLUS_4             2               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  L1CAM MUTATED        0      1      3      0      0      0      0
  L1CAM WILD-TYPE     12     16     18      9      6     14      6
D119V4, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             3              18
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             0               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        4      2      0
  L1CAM WILD-TYPE     67     41     32
D119V5, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              41
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        2      4      0
  L1CAM WILD-TYPE     65     59     16
D119V6, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             2              65
  CLUS_2             4              59
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  L1CAM MUTATED        3      2      1      0
  L1CAM WILD-TYPE     59     34     27     20
D119V7, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             3              59
  CLUS_2             2              34
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        4      2      0
  L1CAM WILD-TYPE     85     33     22
D119V8, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             4              85
  CLUS_2             2              33
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        3      2      1
  L1CAM WILD-TYPE     59     49     30
D119V9, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             3              59
  CLUS_2             2              49
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        4      2      0
  L1CAM WILD-TYPE     71     43     24
D119V10, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             4              71
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(120) Variable = ABCG5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCG5 MUTATED        1      1      1
  ABCG5 WILD-TYPE     65     64     13
D120V1, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCG5 MUTATED        2      0      1      0
  ABCG5 WILD-TYPE     36     29     44     34
D120V2, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCG5 MUTATED        0      1      1      0      1
  ABCG5 WILD-TYPE     34     15     10     11     12
D120V3, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCG5 MUTATED        0      1      0      0      0      1      1
  ABCG5 WILD-TYPE     12     16     21      9      6     13      5
D120V4, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCG5 MUTATED        2      1      0
  ABCG5 WILD-TYPE     69     42     32
D120V5, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCG5 MUTATED        1      2      0
  ABCG5 WILD-TYPE     66     61     16
D120V6, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCG5 MUTATED        1      1      1      0
  ABCG5 WILD-TYPE     61     35     27     20
D120V7, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCG5 MUTATED        3      0      0
  ABCG5 WILD-TYPE     86     35     22
D120V8, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCG5 MUTATED        2      0      0
  ABCG5 WILD-TYPE     60     51     31
D120V9, multiclass
[1] "Remove cluster labels:" "ABCG5 MUTATED"         
clus
  ABCG5 MUTATED ABCG5 WILD-TYPE 
              2             142 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-2J-AABU      TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9I7 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-F2-A44H      TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A4P5 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-FB-A4P6      TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-FB-AAPS      TCGA-FB-AAPU      TCGA-FB-AAPY      TCGA-FB-AAPZ 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-FB-AAQ0      TCGA-FB-AAQ1      TCGA-FB-AAQ2      TCGA-FB-AAQ3 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HV-A5A5      TCGA-HV-A5A6      TCGA-HV-A7OL      TCGA-HV-AA8V 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HV-AA8X      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8317      TCGA-HZ-8519      TCGA-HZ-8636 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HZ-8637      TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A49I 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-HZ-A77O      TCGA-HZ-A77P 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HZ-A77Q      TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG      TCGA-IB-A7LX 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-AAUT      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-S4-A8RM      TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-YY-A8LH      TCGA-Z5-AAPL 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCG5 MUTATED        1      1      0
  ABCG5 WILD-TYPE     74     44     24
D120V10, multiclass
[1] "Remove cluster labels:" "ABCG5 MUTATED"         
clus
  ABCG5 MUTATED ABCG5 WILD-TYPE 
              2             142 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-2J-AABU      TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9I7 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-F2-A44H      TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A4P5 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-FB-A4P6      TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-FB-AAPS      TCGA-FB-AAPU      TCGA-FB-AAPY      TCGA-FB-AAPZ 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-FB-AAQ0      TCGA-FB-AAQ1      TCGA-FB-AAQ2      TCGA-FB-AAQ3 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HV-A5A5      TCGA-HV-A5A6      TCGA-HV-A7OL      TCGA-HV-AA8V 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HV-AA8X      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8317      TCGA-HZ-8519      TCGA-HZ-8636 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HZ-8637      TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A49I 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-HZ-A77O      TCGA-HZ-A77P 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-HZ-A77Q      TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG      TCGA-IB-A7LX 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-IB-AAUT      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-S4-A8RM      TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-YY-A8LH      TCGA-Z5-AAPL 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 

Clustering(121) Variable = KRT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT2 MUTATED        3      2      0
  KRT2 WILD-TYPE     63     63     14
D121V1, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            3             63
  CLUS_2            2             63
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT2 MUTATED        1      1      2      1
  KRT2 WILD-TYPE     37     28     43     33
D121V2, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            1             37
  CLUS_2            1             28
  CLUS_3            2             43
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT2 MUTATED        0      0      2      0      0
  KRT2 WILD-TYPE     34     16      9     11     13
D121V3, multiclass
[1] "Remove cluster labels:" "KRT2 MUTATED"          
clus
  KRT2 MUTATED KRT2 WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8005     TCGA-HZ-8315 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7652 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-M8-A5N4 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM     TCGA-S4-A8RO 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776     TCGA-US-A779 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL     TCGA-XN-A8T5 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT2 MUTATED        0      0      0      1      0      0      1
  KRT2 WILD-TYPE     12     17     21      8      6     14      5
D121V4, multiclass
[1] "Remove cluster labels:" "KRT2 MUTATED"          
clus
  KRT2 MUTATED KRT2 WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8005     TCGA-HZ-8315 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7652 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-M8-A5N4 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM     TCGA-S4-A8RO 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776     TCGA-US-A779 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL     TCGA-XN-A8T5 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT2 MUTATED        2      2      1
  KRT2 WILD-TYPE     69     41     31
D121V5, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             41
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT2 MUTATED        4      1      0
  KRT2 WILD-TYPE     63     62     16
D121V6, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            4             63
  CLUS_2            1             62
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT2 MUTATED        3      2      0      0
  KRT2 WILD-TYPE     59     34     28     20
D121V7, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            2             34
  CLUS_3            0             28
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT2 MUTATED        3      2      0
  KRT2 WILD-TYPE     86     33     22
D121V8, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            2             33
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT2 MUTATED        4      1      0
  KRT2 WILD-TYPE     58     50     31
D121V9, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             50
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT2 MUTATED        2      3      0
  KRT2 WILD-TYPE     73     42     24
D121V10, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            2             73
  CLUS_2            3             42
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(122) Variable = ZNF780A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF780A MUTATED        2      2      1
  ZNF780A WILD-TYPE     64     63     13
D122V1, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               2                64
  CLUS_2               2                63
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF780A MUTATED        2      0      2      1
  ZNF780A WILD-TYPE     36     29     43     33
D122V2, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               2                36
  CLUS_2               0                29
  CLUS_3               2                43
  CLUS_4               1                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF780A MUTATED        1      2      0      1      0
  ZNF780A WILD-TYPE     33     14     11     10     13
D122V3, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               1                33
  CLUS_2               2                14
  CLUS_3               0                11
  CLUS_4               1                10
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF780A MUTATED        0      1      1      0      0      2      0
  ZNF780A WILD-TYPE     12     16     20      9      6     12      6
D122V4, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               0                12
  CLUS_2               1                16
  CLUS_3               1                20
  CLUS_4               0                 9
  CLUS_5               0                 6
  CLUS_6               2                12
  CLUS_7               0                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF780A MUTATED        3      1      1
  ZNF780A WILD-TYPE     68     42     31
D122V5, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                42
  CLUS_3               1                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF780A MUTATED        2      3      0
  ZNF780A WILD-TYPE     65     60     16
D122V6, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               2                65
  CLUS_2               3                60
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF780A MUTATED        4      1      0      0
  ZNF780A WILD-TYPE     58     35     28     20
D122V7, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               4                58
  CLUS_2               1                35
  CLUS_3               0                28
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF780A MUTATED        4      1      0
  ZNF780A WILD-TYPE     85     34     22
D122V8, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               4                85
  CLUS_2               1                34
  CLUS_3               0                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF780A MUTATED        2      1      2
  ZNF780A WILD-TYPE     60     50     29
D122V9, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               2                60
  CLUS_2               1                50
  CLUS_3               2                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF780A MUTATED        4      1      0
  ZNF780A WILD-TYPE     71     44     24
D122V10, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               4                71
  CLUS_2               1                44
  CLUS_3               0                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(123) Variable = DDX4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX4 MUTATED        5      0      0
  DDX4 WILD-TYPE     61     65     14
D123V1, multiclass
        clus
vv       DDX4 MUTATED DDX4 WILD-TYPE
  CLUS_1            5             61
  CLUS_2            0             65
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX4 MUTATED        2      0      0      3
  DDX4 WILD-TYPE     36     29     45     31
D123V2, multiclass
        clus
vv       DDX4 MUTATED DDX4 WILD-TYPE
  CLUS_1            2             36
  CLUS_2            0             29
  CLUS_3            0             45
  CLUS_4            3             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX4 MUTATED        0      2      1      0      0
  DDX4 WILD-TYPE     34     14     10     11     13
D123V3, multiclass
        clus
vv       DDX4 MUTATED DDX4 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            2             14
  CLUS_3            1             10
  CLUS_4            0             11
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX4 MUTATED        0      2      0      0      0      0      1
  DDX4 WILD-TYPE     12     15     21      9      6     14      5
D123V4, multiclass
        clus
vv       DDX4 MUTATED DDX4 WILD-TYPE
  CLUS_1            0             12
  CLUS_2            2             15
  CLUS_3            0             21
  CLUS_4            0              9
  CLUS_5            0              6
  CLUS_6            0             14
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX4 MUTATED        4      1      0
  DDX4 WILD-TYPE     67     42     32
D123V5, multiclass
        clus
vv       DDX4 MUTATED DDX4 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            1             42
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX4 MUTATED        2      3      0
  DDX4 WILD-TYPE     65     60     16
D123V6, multiclass
        clus
vv       DDX4 MUTATED DDX4 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            3             60
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX4 MUTATED        0      1      4      0
  DDX4 WILD-TYPE     62     35     24     20
D123V7, multiclass
        clus
vv       DDX4 MUTATED DDX4 WILD-TYPE
  CLUS_1            0             62
  CLUS_2            1             35
  CLUS_3            4             24
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX4 MUTATED        5      0      0
  DDX4 WILD-TYPE     84     35     22
D123V8, multiclass
        clus
vv       DDX4 MUTATED DDX4 WILD-TYPE
  CLUS_1            5             84
  CLUS_2            0             35
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX4 MUTATED        2      2      1
  DDX4 WILD-TYPE     60     49     30
D123V9, multiclass
        clus
vv       DDX4 MUTATED DDX4 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            2             49
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX4 MUTATED        3      2      0
  DDX4 WILD-TYPE     72     43     24
D123V10, multiclass
        clus
vv       DDX4 MUTATED DDX4 WILD-TYPE
  CLUS_1            3             72
  CLUS_2            2             43
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(124) Variable = BTN2A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A1 MUTATED        1      2      0
  BTN2A1 WILD-TYPE     65     63     14
D124V1, multiclass
        clus
vv       BTN2A1 MUTATED BTN2A1 WILD-TYPE
  CLUS_1              1               65
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTN2A1 MUTATED        2      0      1      0
  BTN2A1 WILD-TYPE     36     29     44     34
D124V2, multiclass
        clus
vv       BTN2A1 MUTATED BTN2A1 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              0               29
  CLUS_3              1               44
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTN2A1 MUTATED        1      0      2      0      0
  BTN2A1 WILD-TYPE     33     16      9     11     13
D124V3, multiclass
        clus
vv       BTN2A1 MUTATED BTN2A1 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              0               16
  CLUS_3              2                9
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BTN2A1 MUTATED        1      0      0      1      0      0      1
  BTN2A1 WILD-TYPE     11     17     21      8      6     14      5
D124V4, multiclass
        clus
vv       BTN2A1 MUTATED BTN2A1 WILD-TYPE
  CLUS_1              1               11
  CLUS_2              0               17
  CLUS_3              0               21
  CLUS_4              1                8
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A1 MUTATED        0      2      1
  BTN2A1 WILD-TYPE     71     41     31
D124V5, multiclass
        clus
vv       BTN2A1 MUTATED BTN2A1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              2               41
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A1 MUTATED        2      1      0
  BTN2A1 WILD-TYPE     65     62     16
D124V6, multiclass
        clus
vv       BTN2A1 MUTATED BTN2A1 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              1               62
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTN2A1 MUTATED        1      1      0      1
  BTN2A1 WILD-TYPE     61     35     28     19
D124V7, multiclass
        clus
vv       BTN2A1 MUTATED BTN2A1 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              1               35
  CLUS_3              0               28
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A1 MUTATED        2      0      1
  BTN2A1 WILD-TYPE     87     35     21
D124V8, multiclass
        clus
vv       BTN2A1 MUTATED BTN2A1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              0               35
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A1 MUTATED        1      1      1
  BTN2A1 WILD-TYPE     61     50     30
D124V9, multiclass
        clus
vv       BTN2A1 MUTATED BTN2A1 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              1               50
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A1 MUTATED        0      2      1
  BTN2A1 WILD-TYPE     75     43     23
D124V10, multiclass
        clus
vv       BTN2A1 MUTATED BTN2A1 WILD-TYPE
  CLUS_1              0               75
  CLUS_2              2               43
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(125) Variable = TDRD5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD5 MUTATED        2      2      0
  TDRD5 WILD-TYPE     64     63     14
D125V1, multiclass
        clus
vv       TDRD5 MUTATED TDRD5 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDRD5 MUTATED        2      0      2      0
  TDRD5 WILD-TYPE     36     29     43     34
D125V2, multiclass
        clus
vv       TDRD5 MUTATED TDRD5 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             2              43
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TDRD5 MUTATED        0      1      1      1      0
  TDRD5 WILD-TYPE     34     15     10     10     13
D125V3, multiclass
        clus
vv       TDRD5 MUTATED TDRD5 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TDRD5 MUTATED        0      1      1      0      0      0      1
  TDRD5 WILD-TYPE     12     16     20      9      6     14      5
D125V4, multiclass
        clus
vv       TDRD5 MUTATED TDRD5 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD5 MUTATED        3      1      0
  TDRD5 WILD-TYPE     68     42     32
D125V5, multiclass
        clus
vv       TDRD5 MUTATED TDRD5 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD5 MUTATED        2      2      0
  TDRD5 WILD-TYPE     65     61     16
D125V6, multiclass
        clus
vv       TDRD5 MUTATED TDRD5 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDRD5 MUTATED        2      1      1      0
  TDRD5 WILD-TYPE     60     35     27     20
D125V7, multiclass
        clus
vv       TDRD5 MUTATED TDRD5 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD5 MUTATED        4      0      0
  TDRD5 WILD-TYPE     85     35     22
D125V8, multiclass
        clus
vv       TDRD5 MUTATED TDRD5 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD5 MUTATED        3      1      0
  TDRD5 WILD-TYPE     59     50     31
D125V9, multiclass
        clus
vv       TDRD5 MUTATED TDRD5 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD5 MUTATED        2      2      0
  TDRD5 WILD-TYPE     73     43     24
D125V10, multiclass
        clus
vv       TDRD5 MUTATED TDRD5 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(126) Variable = OR2A14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2A14 MUTATED        2      2      0
  OR2A14 WILD-TYPE     64     63     14
D126V1, multiclass
        clus
vv       OR2A14 MUTATED OR2A14 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2A14 MUTATED        2      0      1      1
  OR2A14 WILD-TYPE     36     29     44     33
D126V2, multiclass
        clus
vv       OR2A14 MUTATED OR2A14 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              0               29
  CLUS_3              1               44
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2A14 MUTATED        0      2      0      0      0
  OR2A14 WILD-TYPE     34     14     11     11     13
D126V3, multiclass
[1] "Remove cluster labels:" "OR2A14 MUTATED"        
clus
  OR2A14 MUTATED OR2A14 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2A14 MUTATED        0      2      0      0      0      0      0
  OR2A14 WILD-TYPE     12     15     21      9      6     14      6
D126V4, multiclass
[1] "Remove cluster labels:" "OR2A14 MUTATED"        
clus
  OR2A14 MUTATED OR2A14 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" "OR2A14 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2A14 MUTATED        4      0      0
  OR2A14 WILD-TYPE     67     43     32
D126V5, multiclass
        clus
vv       OR2A14 MUTATED OR2A14 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               43
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2A14 MUTATED        1      3      0
  OR2A14 WILD-TYPE     66     60     16
D126V6, multiclass
        clus
vv       OR2A14 MUTATED OR2A14 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              3               60
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2A14 MUTATED        2      0      2      0
  OR2A14 WILD-TYPE     60     36     26     20
D126V7, multiclass
        clus
vv       OR2A14 MUTATED OR2A14 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               36
  CLUS_3              2               26
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2A14 MUTATED        4      0      0
  OR2A14 WILD-TYPE     85     35     22
D126V8, multiclass
        clus
vv       OR2A14 MUTATED OR2A14 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2A14 MUTATED        3      1      0
  OR2A14 WILD-TYPE     59     50     31
D126V9, multiclass
        clus
vv       OR2A14 MUTATED OR2A14 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               50
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2A14 MUTATED        3      1      0
  OR2A14 WILD-TYPE     72     44     24
D126V10, multiclass
        clus
vv       OR2A14 MUTATED OR2A14 WILD-TYPE
  CLUS_1              3               72
  CLUS_2              1               44
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(127) Variable = PBRM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        3      1      1
  PBRM1 WILD-TYPE     63     64     13
D127V1, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        2      0      1      2
  PBRM1 WILD-TYPE     36     29     44     32
D127V2, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBRM1 MUTATED        1      0      1      0      0
  PBRM1 WILD-TYPE     33     16     10     11     13
D127V3, multiclass
[1] "Remove cluster labels:" "PBRM1 MUTATED"         
clus
  PBRM1 MUTATED PBRM1 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PBRM1 MUTATED        0      0      1      0      0      0      1
  PBRM1 WILD-TYPE     12     17     20      9      6     14      5
D127V4, multiclass
[1] "Remove cluster labels:" "PBRM1 MUTATED"         
clus
  PBRM1 MUTATED PBRM1 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" "PBRM1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        3      1      1
  PBRM1 WILD-TYPE     68     42     31
D127V5, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              42
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        1      3      1
  PBRM1 WILD-TYPE     66     60     15
D127V6, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             3              60
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        2      1      2      0
  PBRM1 WILD-TYPE     60     35     26     20
D127V7, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              35
  CLUS_3             2              26
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        4      0      1
  PBRM1 WILD-TYPE     85     35     21
D127V8, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             0              35
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        3      1      1
  PBRM1 WILD-TYPE     59     50     30
D127V9, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              50
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        3      1      1
  PBRM1 WILD-TYPE     72     44     23
D127V10, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             1              44
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(128) Variable = SEPT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEPT2 MUTATED        3      0      0
  SEPT2 WILD-TYPE     63     65     14
D128V1, multiclass
        clus
vv       SEPT2 MUTATED SEPT2 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             0              65
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEPT2 MUTATED        2      1      0      0
  SEPT2 WILD-TYPE     36     28     45     34
D128V2, multiclass
        clus
vv       SEPT2 MUTATED SEPT2 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             1              28
  CLUS_3             0              45
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEPT2 MUTATED        0      1      1      0      0
  SEPT2 WILD-TYPE     34     15     10     11     13
D128V3, multiclass
[1] "Remove cluster labels:" "SEPT2 MUTATED"         
clus
  SEPT2 MUTATED SEPT2 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7652 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SEPT2 MUTATED        0      1      0      0      0      0      1
  SEPT2 WILD-TYPE     12     16     21      9      6     14      5
D128V4, multiclass
[1] "Remove cluster labels:" "SEPT2 MUTATED"         
clus
  SEPT2 MUTATED SEPT2 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7652 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" "SEPT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEPT2 MUTATED        1      2      0
  SEPT2 WILD-TYPE     70     41     32
D128V5, multiclass
        clus
vv       SEPT2 MUTATED SEPT2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              41
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEPT2 MUTATED        3      0      0
  SEPT2 WILD-TYPE     64     63     16
D128V6, multiclass
        clus
vv       SEPT2 MUTATED SEPT2 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             0              63
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEPT2 MUTATED        0      2      1      0
  SEPT2 WILD-TYPE     62     34     27     20
D128V7, multiclass
        clus
vv       SEPT2 MUTATED SEPT2 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             2              34
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEPT2 MUTATED        2      1      0
  SEPT2 WILD-TYPE     87     34     22
D128V8, multiclass
        clus
vv       SEPT2 MUTATED SEPT2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEPT2 MUTATED        1      2      0
  SEPT2 WILD-TYPE     61     49     31
D128V9, multiclass
        clus
vv       SEPT2 MUTATED SEPT2 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              49
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEPT2 MUTATED        0      3      0
  SEPT2 WILD-TYPE     75     42     24
D128V10, multiclass
        clus
vv       SEPT2 MUTATED SEPT2 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             3              42
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(129) Variable = WDHD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDHD1 MUTATED        1      1      1
  WDHD1 WILD-TYPE     65     64     13
D129V1, multiclass
        clus
vv       WDHD1 MUTATED WDHD1 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDHD1 MUTATED        2      0      1      0
  WDHD1 WILD-TYPE     36     29     44     34
D129V2, multiclass
        clus
vv       WDHD1 MUTATED WDHD1 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDHD1 MUTATED        0      0      1      0      1
  WDHD1 WILD-TYPE     34     16     10     11     12
D129V3, multiclass
[1] "Remove cluster labels:" "WDHD1 MUTATED"         
clus
  WDHD1 MUTATED WDHD1 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8315 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7652 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDHD1 MUTATED        0      0      0      0      0      1      1
  WDHD1 WILD-TYPE     12     17     21      9      6     13      5
D129V4, multiclass
[1] "Remove cluster labels:" "WDHD1 MUTATED"         
clus
  WDHD1 MUTATED WDHD1 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8315 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7652 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDHD1 MUTATED        2      1      0
  WDHD1 WILD-TYPE     69     42     32
D129V5, multiclass
        clus
vv       WDHD1 MUTATED WDHD1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDHD1 MUTATED        1      2      0
  WDHD1 WILD-TYPE     66     61     16
D129V6, multiclass
        clus
vv       WDHD1 MUTATED WDHD1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDHD1 MUTATED        1      1      1      0
  WDHD1 WILD-TYPE     61     35     27     20
D129V7, multiclass
        clus
vv       WDHD1 MUTATED WDHD1 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDHD1 MUTATED        3      0      0
  WDHD1 WILD-TYPE     86     35     22
D129V8, multiclass
        clus
vv       WDHD1 MUTATED WDHD1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDHD1 MUTATED        2      0      0
  WDHD1 WILD-TYPE     60     51     31
D129V9, multiclass
[1] "Remove cluster labels:" "WDHD1 MUTATED"         
clus
  WDHD1 MUTATED WDHD1 WILD-TYPE 
              2             142 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-2J-AABU      TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9I7 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-F2-A44H      TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A4P5 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-FB-A4P6      TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-FB-AAPS      TCGA-FB-AAPU      TCGA-FB-AAPY      TCGA-FB-AAPZ 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-FB-AAQ0      TCGA-FB-AAQ1      TCGA-FB-AAQ2      TCGA-FB-AAQ3 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HV-A5A5      TCGA-HV-A5A6      TCGA-HV-A7OL      TCGA-HV-AA8V 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HV-AA8X      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8317      TCGA-HZ-8519      TCGA-HZ-8636 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-8637      TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A4BH 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-A4BK      TCGA-HZ-A77O      TCGA-HZ-A77P      TCGA-HZ-A77Q 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ      TCGA-IB-7644 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG      TCGA-IB-A7LX 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-AAUT      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-S4-A8RM      TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-YY-A8LH      TCGA-Z5-AAPL 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDHD1 MUTATED        1      1      0
  WDHD1 WILD-TYPE     74     44     24
D129V10, multiclass
[1] "Remove cluster labels:" "WDHD1 MUTATED"         
clus
  WDHD1 MUTATED WDHD1 WILD-TYPE 
              2             142 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-2J-AABU      TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-2L-AAQJ      TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9I7 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-F2-A44H      TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A4P5 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-FB-A4P6      TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-FB-AAPS      TCGA-FB-AAPU      TCGA-FB-AAPY      TCGA-FB-AAPZ 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-FB-AAQ0      TCGA-FB-AAQ1      TCGA-FB-AAQ2      TCGA-FB-AAQ3 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HV-A5A5      TCGA-HV-A5A6      TCGA-HV-A7OL      TCGA-HV-AA8V 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HV-AA8X      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8317      TCGA-HZ-8519      TCGA-HZ-8636 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-8637      TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A4BH 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-A4BK      TCGA-HZ-A77O      TCGA-HZ-A77P      TCGA-HZ-A77Q 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ      TCGA-IB-7644 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG      TCGA-IB-A7LX 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-IB-AAUT      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-S4-A8RM      TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 
     TCGA-YY-A8LH      TCGA-Z5-AAPL 
"WDHD1 WILD-TYPE" "WDHD1 WILD-TYPE" 

Clustering(130) Variable = ANKRD49 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD49 MUTATED        1      1      1
  ANKRD49 WILD-TYPE     65     64     13
D130V1, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               1                65
  CLUS_2               1                64
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD49 MUTATED        2      0      0      1
  ANKRD49 WILD-TYPE     36     29     45     33
D130V2, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               2                36
  CLUS_2               0                29
  CLUS_3               0                45
  CLUS_4               1                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD49 MUTATED        0      0      1      0      2
  ANKRD49 WILD-TYPE     34     16     10     11     11
D130V3, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               0                34
  CLUS_2               0                16
  CLUS_3               1                10
  CLUS_4               0                11
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD49 MUTATED        0      0      0      0      0      2      1
  ANKRD49 WILD-TYPE     12     17     21      9      6     12      5
D130V4, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               0                12
  CLUS_2               0                17
  CLUS_3               0                21
  CLUS_4               0                 9
  CLUS_5               0                 6
  CLUS_6               2                12
  CLUS_7               1                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD49 MUTATED        2      1      0
  ANKRD49 WILD-TYPE     69     42     32
D130V5, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                42
  CLUS_3               0                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD49 MUTATED        1      2      0
  ANKRD49 WILD-TYPE     66     61     16
D130V6, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               1                66
  CLUS_2               2                61
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD49 MUTATED        1      1      1      0
  ANKRD49 WILD-TYPE     61     35     27     20
D130V7, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               1                61
  CLUS_2               1                35
  CLUS_3               1                27
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD49 MUTATED        3      0      0
  ANKRD49 WILD-TYPE     86     35     22
D130V8, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               0                35
  CLUS_3               0                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD49 MUTATED        2      0      0
  ANKRD49 WILD-TYPE     60     51     31
D130V9, multiclass
[1] "Remove cluster labels:" "ANKRD49 MUTATED"       
clus
  ANKRD49 MUTATED ANKRD49 WILD-TYPE 
                2               142 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABR 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-2J-AABU        TCGA-2L-AAQA        TCGA-2L-AAQE        TCGA-2L-AAQI 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-2L-AAQJ        TCGA-2L-AAQL        TCGA-3A-A9I5        TCGA-3A-A9I7 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-3A-A9I9        TCGA-3A-A9IB        TCGA-3A-A9IC        TCGA-3A-A9IH 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3A-A9J0 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-6879        TCGA-F2-A44G 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-F2-A44H        TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A4P5 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-FB-A4P6        TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-FB-AAPS        TCGA-FB-AAPU        TCGA-FB-AAPY        TCGA-FB-AAPZ 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-FB-AAQ0        TCGA-FB-AAQ1        TCGA-FB-AAQ2        TCGA-FB-AAQ3 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HV-A7OL        TCGA-HV-AA8V 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HV-AA8X        TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7925 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HZ-8315        TCGA-HZ-8317        TCGA-HZ-8519        TCGA-HZ-8636 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HZ-8637        TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-HZ-A77O        TCGA-HZ-A77P 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HZ-A77Q        TCGA-HZ-A8P0        TCGA-HZ-A8P1        TCGA-HZ-A9TJ 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A6UG        TCGA-IB-A7LX 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-AAUP        TCGA-IB-AAUQ        TCGA-IB-AAUR        TCGA-IB-AAUS 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-AAUT        TCGA-IB-AAUU        TCGA-LB-A7SX        TCGA-LB-A8F3 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-M8-A5N4        TCGA-OE-A75W        TCGA-PZ-A5RE 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-S4-A8RM        TCGA-S4-A8RO        TCGA-S4-A8RP        TCGA-US-A774 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-XD-AAUG        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-XN-A8T3        TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-YY-A8LH        TCGA-Z5-AAPL 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD49 MUTATED        0      2      0
  ANKRD49 WILD-TYPE     75     43     24
D130V10, multiclass
[1] "Remove cluster labels:" "ANKRD49 MUTATED"       
clus
  ANKRD49 MUTATED ANKRD49 WILD-TYPE 
                2               142 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABR 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-2J-AABU        TCGA-2L-AAQA        TCGA-2L-AAQE        TCGA-2L-AAQI 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-2L-AAQJ        TCGA-2L-AAQL        TCGA-3A-A9I5        TCGA-3A-A9I7 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-3A-A9I9        TCGA-3A-A9IB        TCGA-3A-A9IC        TCGA-3A-A9IH 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3A-A9J0 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-6879        TCGA-F2-A44G 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-F2-A44H        TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A4P5 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-FB-A4P6        TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-FB-AAPS        TCGA-FB-AAPU        TCGA-FB-AAPY        TCGA-FB-AAPZ 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-FB-AAQ0        TCGA-FB-AAQ1        TCGA-FB-AAQ2        TCGA-FB-AAQ3 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HV-A7OL        TCGA-HV-AA8V 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HV-AA8X        TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7925 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HZ-8315        TCGA-HZ-8317        TCGA-HZ-8519        TCGA-HZ-8636 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HZ-8637        TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-HZ-A77O        TCGA-HZ-A77P 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-HZ-A77Q        TCGA-HZ-A8P0        TCGA-HZ-A8P1        TCGA-HZ-A9TJ 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A6UG        TCGA-IB-A7LX 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-AAUP        TCGA-IB-AAUQ        TCGA-IB-AAUR        TCGA-IB-AAUS 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-IB-AAUT        TCGA-IB-AAUU        TCGA-LB-A7SX        TCGA-LB-A8F3 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-M8-A5N4        TCGA-OE-A75W        TCGA-PZ-A5RE 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-S4-A8RM        TCGA-S4-A8RO        TCGA-S4-A8RP        TCGA-US-A774 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-XD-AAUG        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-XN-A8T3        TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 
       TCGA-YY-A8LH        TCGA-Z5-AAPL 
"ANKRD49 WILD-TYPE" "ANKRD49 WILD-TYPE" 

Clustering(131) Variable = PAPSS2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAPSS2 MUTATED        2      2      0
  PAPSS2 WILD-TYPE     64     63     14
D131V1, multiclass
        clus
vv       PAPSS2 MUTATED PAPSS2 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAPSS2 MUTATED        1      0      1      2
  PAPSS2 WILD-TYPE     37     29     44     32
D131V2, multiclass
        clus
vv       PAPSS2 MUTATED PAPSS2 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              0               29
  CLUS_3              1               44
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPSS2 MUTATED        0      0      2      0      2
  PAPSS2 WILD-TYPE     34     16      9     11     11
D131V3, multiclass
        clus
vv       PAPSS2 MUTATED PAPSS2 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              0               16
  CLUS_3              2                9
  CLUS_4              0               11
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAPSS2 MUTATED        0      0      0      1      1      1      1
  PAPSS2 WILD-TYPE     12     17     21      8      5     13      5
D131V4, multiclass
        clus
vv       PAPSS2 MUTATED PAPSS2 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              0               17
  CLUS_3              0               21
  CLUS_4              1                8
  CLUS_5              1                5
  CLUS_6              1               13
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAPSS2 MUTATED        2      2      0
  PAPSS2 WILD-TYPE     69     41     32
D131V5, multiclass
        clus
vv       PAPSS2 MUTATED PAPSS2 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               41
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAPSS2 MUTATED        2      2      0
  PAPSS2 WILD-TYPE     65     61     16
D131V6, multiclass
        clus
vv       PAPSS2 MUTATED PAPSS2 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              2               61
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAPSS2 MUTATED        2      1      1      0
  PAPSS2 WILD-TYPE     60     35     27     20
D131V7, multiclass
        clus
vv       PAPSS2 MUTATED PAPSS2 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               35
  CLUS_3              1               27
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAPSS2 MUTATED        4      0      0
  PAPSS2 WILD-TYPE     85     35     22
D131V8, multiclass
        clus
vv       PAPSS2 MUTATED PAPSS2 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAPSS2 MUTATED        3      0      1
  PAPSS2 WILD-TYPE     59     51     30
D131V9, multiclass
        clus
vv       PAPSS2 MUTATED PAPSS2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               51
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAPSS2 MUTATED        1      3      0
  PAPSS2 WILD-TYPE     74     42     24
D131V10, multiclass
        clus
vv       PAPSS2 MUTATED PAPSS2 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              3               42
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(132) Variable = GPRC6A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRC6A MUTATED        5      0      0
  GPRC6A WILD-TYPE     61     65     14
D132V1, multiclass
        clus
vv       GPRC6A MUTATED GPRC6A WILD-TYPE
  CLUS_1              5               61
  CLUS_2              0               65
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRC6A MUTATED        2      1      0      2
  GPRC6A WILD-TYPE     36     28     45     32
D132V2, multiclass
        clus
vv       GPRC6A MUTATED GPRC6A WILD-TYPE
  CLUS_1              2               36
  CLUS_2              1               28
  CLUS_3              0               45
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPRC6A MUTATED        1      2      1      0      1
  GPRC6A WILD-TYPE     33     14     10     11     12
D132V3, multiclass
        clus
vv       GPRC6A MUTATED GPRC6A WILD-TYPE
  CLUS_1              1               33
  CLUS_2              2               14
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPRC6A MUTATED        0      3      1      0      0      0      1
  GPRC6A WILD-TYPE     12     14     20      9      6     14      5
D132V4, multiclass
        clus
vv       GPRC6A MUTATED GPRC6A WILD-TYPE
  CLUS_1              0               12
  CLUS_2              3               14
  CLUS_3              1               20
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRC6A MUTATED        2      2      1
  GPRC6A WILD-TYPE     69     41     31
D132V5, multiclass
        clus
vv       GPRC6A MUTATED GPRC6A WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               41
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRC6A MUTATED        2      2      1
  GPRC6A WILD-TYPE     65     61     15
D132V6, multiclass
        clus
vv       GPRC6A MUTATED GPRC6A WILD-TYPE
  CLUS_1              2               65
  CLUS_2              2               61
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRC6A MUTATED        0      2      3      0
  GPRC6A WILD-TYPE     62     34     25     20
D132V7, multiclass
        clus
vv       GPRC6A MUTATED GPRC6A WILD-TYPE
  CLUS_1              0               62
  CLUS_2              2               34
  CLUS_3              3               25
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRC6A MUTATED        3      1      1
  GPRC6A WILD-TYPE     86     34     21
D132V8, multiclass
        clus
vv       GPRC6A MUTATED GPRC6A WILD-TYPE
  CLUS_1              3               86
  CLUS_2              1               34
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRC6A MUTATED        2      3      0
  GPRC6A WILD-TYPE     60     48     31
D132V9, multiclass
        clus
vv       GPRC6A MUTATED GPRC6A WILD-TYPE
  CLUS_1              2               60
  CLUS_2              3               48
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRC6A MUTATED        2      2      1
  GPRC6A WILD-TYPE     73     43     23
D132V10, multiclass
        clus
vv       GPRC6A MUTATED GPRC6A WILD-TYPE
  CLUS_1              2               73
  CLUS_2              2               43
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(133) Variable = PDXDC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDXDC1 MUTATED        1      1      1
  PDXDC1 WILD-TYPE     65     64     13
D133V1, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              1               65
  CLUS_2              1               64
  CLUS_3              1               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDXDC1 MUTATED        1      0      2      0
  PDXDC1 WILD-TYPE     37     29     43     34
D133V2, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              0               29
  CLUS_3              2               43
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDXDC1 MUTATED        0      0      1      0      0
  PDXDC1 WILD-TYPE     34     16     10     11     13
D133V3, multiclass
[1] "Remove cluster labels:" "PDXDC1 MUTATED"        
clus
  PDXDC1 MUTATED PDXDC1 WILD-TYPE 
               1               84 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-HV-A5A6       TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-HZ-8001       TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-HZ-8315       TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-M8-A5N4       TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-S4-A8RO       TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDXDC1 MUTATED        0      0      0      0      0      0      1
  PDXDC1 WILD-TYPE     12     17     21      9      6     14      5
D133V4, multiclass
[1] "Remove cluster labels:" "PDXDC1 MUTATED"        
clus
  PDXDC1 MUTATED PDXDC1 WILD-TYPE 
               1               84 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-HV-A5A6       TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-HZ-8001       TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-HZ-8315       TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-M8-A5N4       TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-S4-A8RO       TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDXDC1 MUTATED        2      1      0
  PDXDC1 WILD-TYPE     69     42     32
D133V5, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               42
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDXDC1 MUTATED        3      0      0
  PDXDC1 WILD-TYPE     64     63     16
D133V6, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              0               63
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDXDC1 MUTATED        2      1      0      0
  PDXDC1 WILD-TYPE     60     35     28     20
D133V7, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               35
  CLUS_3              0               28
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDXDC1 MUTATED        2      1      0
  PDXDC1 WILD-TYPE     87     34     22
D133V8, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              1               34
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDXDC1 MUTATED        3      0      0
  PDXDC1 WILD-TYPE     59     51     31
D133V9, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               51
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDXDC1 MUTATED        1      2      0
  PDXDC1 WILD-TYPE     74     43     24
D133V10, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              2               43
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(134) Variable = TGM5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TGM5 MUTATED        3      1      0
  TGM5 WILD-TYPE     63     64     14
D134V1, multiclass
        clus
vv       TGM5 MUTATED TGM5 WILD-TYPE
  CLUS_1            3             63
  CLUS_2            1             64
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGM5 MUTATED        1      1      0      2
  TGM5 WILD-TYPE     37     28     45     32
D134V2, multiclass
        clus
vv       TGM5 MUTATED TGM5 WILD-TYPE
  CLUS_1            1             37
  CLUS_2            1             28
  CLUS_3            0             45
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGM5 MUTATED        0      2      0      0      1
  TGM5 WILD-TYPE     34     14     11     11     12
D134V3, multiclass
        clus
vv       TGM5 MUTATED TGM5 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            2             14
  CLUS_3            0             11
  CLUS_4            0             11
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGM5 MUTATED        0      2      0      0      1      0      0
  TGM5 WILD-TYPE     12     15     21      9      5     14      6
D134V4, multiclass
        clus
vv       TGM5 MUTATED TGM5 WILD-TYPE
  CLUS_1            0             12
  CLUS_2            2             15
  CLUS_3            0             21
  CLUS_4            0              9
  CLUS_5            1              5
  CLUS_6            0             14
  CLUS_7            0              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TGM5 MUTATED        2      1      1
  TGM5 WILD-TYPE     69     42     31
D134V5, multiclass
        clus
vv       TGM5 MUTATED TGM5 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             42
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TGM5 MUTATED        2      2      0
  TGM5 WILD-TYPE     65     61     16
D134V6, multiclass
        clus
vv       TGM5 MUTATED TGM5 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            2             61
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGM5 MUTATED        1      1      2      0
  TGM5 WILD-TYPE     61     35     26     20
D134V7, multiclass
        clus
vv       TGM5 MUTATED TGM5 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             35
  CLUS_3            2             26
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TGM5 MUTATED        2      2      0
  TGM5 WILD-TYPE     87     33     22
D134V8, multiclass
        clus
vv       TGM5 MUTATED TGM5 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2             33
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TGM5 MUTATED        2      2      0
  TGM5 WILD-TYPE     60     49     31
D134V9, multiclass
        clus
vv       TGM5 MUTATED TGM5 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            2             49
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TGM5 MUTATED        2      2      0
  TGM5 WILD-TYPE     73     43     24
D134V10, multiclass
        clus
vv       TGM5 MUTATED TGM5 WILD-TYPE
  CLUS_1            2             73
  CLUS_2            2             43
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(135) Variable = NUP54 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP54 MUTATED        1      2      0
  NUP54 WILD-TYPE     65     63     14
D135V1, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP54 MUTATED        2      0      1      0
  NUP54 WILD-TYPE     36     29     44     34
D135V2, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUP54 MUTATED        1      1      1      0      0
  NUP54 WILD-TYPE     33     15     10     11     13
D135V3, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUP54 MUTATED        0      1      0      0      0      0      2
  NUP54 WILD-TYPE     12     16     21      9      6     14      4
D135V4, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             2               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP54 MUTATED        2      1      0
  NUP54 WILD-TYPE     69     42     32
D135V5, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP54 MUTATED        1      2      0
  NUP54 WILD-TYPE     66     61     16
D135V6, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP54 MUTATED        2      1      0      0
  NUP54 WILD-TYPE     60     35     28     20
D135V7, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              35
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP54 MUTATED        3      0      0
  NUP54 WILD-TYPE     86     35     22
D135V8, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP54 MUTATED        3      0      0
  NUP54 WILD-TYPE     59     51     31
D135V9, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              51
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP54 MUTATED        2      1      0
  NUP54 WILD-TYPE     73     44     24
D135V10, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(136) Variable = NLRP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP6 MUTATED        1      1      1
  NLRP6 WILD-TYPE     65     64     13
D136V1, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP6 MUTATED        2      0      0      1
  NLRP6 WILD-TYPE     36     29     45     33
D136V2, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             0              45
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLRP6 MUTATED        1      0      0      1      0
  NLRP6 WILD-TYPE     33     16     11     10     13
D136V3, multiclass
[1] "Remove cluster labels:" "NLRP6 MUTATED"         
clus
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-AAUS      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A776      TCGA-US-A779 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NLRP6 MUTATED        0      0      1      0      0      0      1
  NLRP6 WILD-TYPE     12     17     20      9      6     14      5
D136V4, multiclass
[1] "Remove cluster labels:" "NLRP6 MUTATED"         
clus
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IB-AAUS      TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-M8-A5N4      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A776      TCGA-US-A779 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP6 MUTATED        1      2      0
  NLRP6 WILD-TYPE     70     41     32
D136V5, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              41
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP6 MUTATED        2      1      0
  NLRP6 WILD-TYPE     65     62     16
D136V6, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              62
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP6 MUTATED        1      2      0      0
  NLRP6 WILD-TYPE     61     34     28     20
D136V7, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              34
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP6 MUTATED        2      1      0
  NLRP6 WILD-TYPE     87     34     22
D136V8, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP6 MUTATED        1      0      2
  NLRP6 WILD-TYPE     61     51     29
D136V9, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             0              51
  CLUS_3             2              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP6 MUTATED        2      1      0
  NLRP6 WILD-TYPE     73     44     24
D136V10, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(137) Variable = DHX35 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX35 MUTATED        3      1      0
  DHX35 WILD-TYPE     63     64     14
D137V1, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX35 MUTATED        2      0      0      2
  DHX35 WILD-TYPE     36     29     45     32
D137V2, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             0              45
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX35 MUTATED        1      1      0      0      1
  DHX35 WILD-TYPE     33     15     11     11     12
D137V3, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              15
  CLUS_3             0              11
  CLUS_4             0              11
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DHX35 MUTATED        0      1      1      0      0      1      0
  DHX35 WILD-TYPE     12     16     20      9      6     13      6
D137V4, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             0               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX35 MUTATED        3      0      1
  DHX35 WILD-TYPE     68     43     31
D137V5, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              43
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX35 MUTATED        1      2      1
  DHX35 WILD-TYPE     66     61     15
D137V6, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX35 MUTATED        2      0      2      0
  DHX35 WILD-TYPE     60     36     26     20
D137V7, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              36
  CLUS_3             2              26
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX35 MUTATED        3      0      1
  DHX35 WILD-TYPE     86     35     21
D137V8, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX35 MUTATED        3      1      0
  DHX35 WILD-TYPE     59     50     31
D137V9, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX35 MUTATED        2      1      1
  DHX35 WILD-TYPE     73     44     23
D137V10, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             1              44
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(138) Variable = CEACAM4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM4 MUTATED        1      3      0
  CEACAM4 WILD-TYPE     65     62     14
D138V1, multiclass
        clus
vv       CEACAM4 MUTATED CEACAM4 WILD-TYPE
  CLUS_1               1                65
  CLUS_2               3                62
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM4 MUTATED        3      0      1      0
  CEACAM4 WILD-TYPE     35     29     44     34
D138V2, multiclass
        clus
vv       CEACAM4 MUTATED CEACAM4 WILD-TYPE
  CLUS_1               3                35
  CLUS_2               0                29
  CLUS_3               1                44
  CLUS_4               0                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM4 MUTATED        0      0      1      0      0
  CEACAM4 WILD-TYPE     34     16     10     11     13
D138V3, multiclass
[1] "Remove cluster labels:" "CEACAM4 MUTATED"       
clus
  CEACAM4 MUTATED CEACAM4 WILD-TYPE 
                1                84 
       TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-3A-A9I5        TCGA-3A-A9IB        TCGA-3A-A9IH        TCGA-3A-A9IU 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ        TCGA-F2-6879 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-H6-A45N 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-HV-A5A6        TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7925 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8005 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-HZ-8315        TCGA-HZ-8519        TCGA-HZ-A4BH        TCGA-HZ-A4BK 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SO 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-LB-A7SX        TCGA-LB-A8F3        TCGA-LB-A9Q5 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-M8-A5N4        TCGA-OE-A75W        TCGA-PZ-A5RE        TCGA-Q3-A5QY 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RM 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-S4-A8RO        TCGA-S4-A8RP        TCGA-US-A774        TCGA-US-A776 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-XD-AAUL 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEACAM4 MUTATED        0      0      0      0      0      0      1
  CEACAM4 WILD-TYPE     12     17     21      9      6     14      5
D138V4, multiclass
[1] "Remove cluster labels:" "CEACAM4 MUTATED"       
clus
  CEACAM4 MUTATED CEACAM4 WILD-TYPE 
                1                84 
       TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-3A-A9I5        TCGA-3A-A9IB        TCGA-3A-A9IH        TCGA-3A-A9IU 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ        TCGA-F2-6879 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-H6-A45N 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-HV-A5A6        TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7925 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8005 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-HZ-8315        TCGA-HZ-8519        TCGA-HZ-A4BH        TCGA-HZ-A4BK 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SO 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-LB-A7SX        TCGA-LB-A8F3        TCGA-LB-A9Q5 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-M8-A5N4        TCGA-OE-A75W        TCGA-PZ-A5RE        TCGA-Q3-A5QY 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RM 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-S4-A8RO        TCGA-S4-A8RP        TCGA-US-A774        TCGA-US-A776 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-XD-AAUL 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" "CEACAM4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM4 MUTATED        1      1      2
  CEACAM4 WILD-TYPE     70     42     30
D138V5, multiclass
        clus
vv       CEACAM4 MUTATED CEACAM4 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               1                42
  CLUS_3               2                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM4 MUTATED        1      3      0
  CEACAM4 WILD-TYPE     66     60     16
D138V6, multiclass
        clus
vv       CEACAM4 MUTATED CEACAM4 WILD-TYPE
  CLUS_1               1                66
  CLUS_2               3                60
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM4 MUTATED        2      1      0      1
  CEACAM4 WILD-TYPE     60     35     28     19
D138V7, multiclass
        clus
vv       CEACAM4 MUTATED CEACAM4 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               1                35
  CLUS_3               0                28
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM4 MUTATED        3      0      1
  CEACAM4 WILD-TYPE     86     35     21
D138V8, multiclass
        clus
vv       CEACAM4 MUTATED CEACAM4 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               0                35
  CLUS_3               1                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM4 MUTATED        3      0      1
  CEACAM4 WILD-TYPE     59     51     30
D138V9, multiclass
        clus
vv       CEACAM4 MUTATED CEACAM4 WILD-TYPE
  CLUS_1               3                59
  CLUS_2               0                51
  CLUS_3               1                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM4 MUTATED        3      1      0
  CEACAM4 WILD-TYPE     72     44     24
D138V10, multiclass
        clus
vv       CEACAM4 MUTATED CEACAM4 WILD-TYPE
  CLUS_1               3                72
  CLUS_2               1                44
  CLUS_3               0                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(139) Variable = MMP13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        1      0      2
  MMP13 WILD-TYPE     65     65     12
D139V1, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             0              65
  CLUS_3             2              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP13 MUTATED        2      0      1      0
  MMP13 WILD-TYPE     36     29     44     34
D139V2, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP13 MUTATED        0      0      1      1      0
  MMP13 WILD-TYPE     34     16     10     10     13
D139V3, multiclass
[1] "Remove cluster labels:" "MMP13 MUTATED"         
clus
  MMP13 MUTATED MMP13 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N      TCGA-HV-A5A6 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7652 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MMP13 MUTATED        0      0      0      0      1      0      1
  MMP13 WILD-TYPE     12     17     21      9      5     14      5
D139V4, multiclass
[1] "Remove cluster labels:" "MMP13 MUTATED"         
clus
  MMP13 MUTATED MMP13 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N      TCGA-HV-A5A6 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7652 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        1      2      0
  MMP13 WILD-TYPE     70     41     32
D139V5, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              41
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        3      0      0
  MMP13 WILD-TYPE     64     63     16
D139V6, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             0              63
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP13 MUTATED        0      2      1      0
  MMP13 WILD-TYPE     62     34     27     20
D139V7, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             2              34
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        3      0      0
  MMP13 WILD-TYPE     86     35     22
D139V8, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        1      0      2
  MMP13 WILD-TYPE     61     51     29
D139V9, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             0              51
  CLUS_3             2              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        2      1      0
  MMP13 WILD-TYPE     73     44     24
D139V10, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(140) Variable = SYCP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP2 MUTATED        4      0      1
  SYCP2 WILD-TYPE     62     65     13
D140V1, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             4              62
  CLUS_2             0              65
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP2 MUTATED        1      1      1      2
  SYCP2 WILD-TYPE     37     28     44     32
D140V2, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             1              28
  CLUS_3             1              44
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2 MUTATED        0      2      1      0      0
  SYCP2 WILD-TYPE     34     14     10     11     13
D140V3, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             2              14
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYCP2 MUTATED        0      2      0      0      0      0      1
  SYCP2 WILD-TYPE     12     15     21      9      6     14      5
D140V4, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             2              15
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP2 MUTATED        2      3      0
  SYCP2 WILD-TYPE     69     40     32
D140V5, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             3              40
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP2 MUTATED        3      2      0
  SYCP2 WILD-TYPE     64     61     16
D140V6, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             2              61
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP2 MUTATED        0      3      2      0
  SYCP2 WILD-TYPE     62     33     26     20
D140V7, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             3              33
  CLUS_3             2              26
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP2 MUTATED        3      2      0
  SYCP2 WILD-TYPE     86     33     22
D140V8, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2              33
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP2 MUTATED        2      1      2
  SYCP2 WILD-TYPE     60     50     29
D140V9, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              50
  CLUS_3             2              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP2 MUTATED        2      3      0
  SYCP2 WILD-TYPE     73     42     24
D140V10, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             3              42
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(141) Variable = LACTB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LACTB MUTATED        3      0      0
  LACTB WILD-TYPE     63     65     14
D141V1, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             3              63
  CLUS_2             0              65
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LACTB MUTATED        1      1      0      1
  LACTB WILD-TYPE     37     28     45     33
D141V2, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             1              37
  CLUS_2             1              28
  CLUS_3             0              45
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LACTB MUTATED        0      2      1      0      0
  LACTB WILD-TYPE     34     14     10     11     13
D141V3, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             0              34
  CLUS_2             2              14
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LACTB MUTATED        0      2      0      0      0      0      1
  LACTB WILD-TYPE     12     15     21      9      6     14      5
D141V4, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             0              12
  CLUS_2             2              15
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LACTB MUTATED        1      2      0
  LACTB WILD-TYPE     70     41     32
D141V5, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              41
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LACTB MUTATED        2      1      0
  LACTB WILD-TYPE     65     62     16
D141V6, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              62
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LACTB MUTATED        0      2      1      0
  LACTB WILD-TYPE     62     34     27     20
D141V7, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             0              62
  CLUS_2             2              34
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LACTB MUTATED        2      1      0
  LACTB WILD-TYPE     87     34     22
D141V8, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LACTB MUTATED        2      1      0
  LACTB WILD-TYPE     60     50     31
D141V9, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LACTB MUTATED        1      2      0
  LACTB WILD-TYPE     74     43     24
D141V10, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(142) Variable = TEKT4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEKT4 MUTATED        5      1      0
  TEKT4 WILD-TYPE     61     64     14
D142V1, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             5              61
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEKT4 MUTATED        3      1      0      2
  TEKT4 WILD-TYPE     35     28     45     32
D142V2, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             1              28
  CLUS_3             0              45
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEKT4 MUTATED        1      0      2      1      0
  TEKT4 WILD-TYPE     33     16      9     10     13
D142V3, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             2               9
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TEKT4 MUTATED        0      0      1      1      0      1      1
  TEKT4 WILD-TYPE     12     17     20      8      6     13      5
D142V4, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             1              20
  CLUS_4             1               8
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEKT4 MUTATED        2      3      1
  TEKT4 WILD-TYPE     69     40     31
D142V5, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             3              40
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEKT4 MUTATED        3      2      1
  TEKT4 WILD-TYPE     64     61     15
D142V6, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             2              61
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEKT4 MUTATED        0      3      2      1
  TEKT4 WILD-TYPE     62     33     26     19
D142V7, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             3              33
  CLUS_3             2              26
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEKT4 MUTATED        3      2      1
  TEKT4 WILD-TYPE     86     33     21
D142V8, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2              33
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEKT4 MUTATED        2      3      1
  TEKT4 WILD-TYPE     60     48     30
D142V9, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             3              48
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEKT4 MUTATED        2      3      1
  TEKT4 WILD-TYPE     73     42     23
D142V10, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             3              42
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(143) Variable = MC3R MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MC3R MUTATED        1      2      1
  MC3R WILD-TYPE     65     63     13
D143V1, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            1             65
  CLUS_2            2             63
  CLUS_3            1             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MC3R MUTATED        3      0      1      0
  MC3R WILD-TYPE     35     29     44     34
D143V2, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            3             35
  CLUS_2            0             29
  CLUS_3            1             44
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MC3R MUTATED        1      1      2      0      0
  MC3R WILD-TYPE     33     15      9     11     13
D143V3, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            1             33
  CLUS_2            1             15
  CLUS_3            2              9
  CLUS_4            0             11
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MC3R MUTATED        0      1      1      1      0      0      1
  MC3R WILD-TYPE     12     16     20      8      6     14      5
D143V4, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            0             12
  CLUS_2            1             16
  CLUS_3            1             20
  CLUS_4            1              8
  CLUS_5            0              6
  CLUS_6            0             14
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MC3R MUTATED        1      2      1
  MC3R WILD-TYPE     70     41     31
D143V5, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             41
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MC3R MUTATED        2      2      0
  MC3R WILD-TYPE     65     61     16
D143V6, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            2             65
  CLUS_2            2             61
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MC3R MUTATED        1      2      0      1
  MC3R WILD-TYPE     61     34     28     19
D143V7, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            1             61
  CLUS_2            2             34
  CLUS_3            0             28
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MC3R MUTATED        3      1      0
  MC3R WILD-TYPE     86     34     22
D143V8, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            3             86
  CLUS_2            1             34
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MC3R MUTATED        2      1      1
  MC3R WILD-TYPE     60     50     30
D143V9, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             50
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MC3R MUTATED        2      2      0
  MC3R WILD-TYPE     73     43     24
D143V10, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            2             73
  CLUS_2            2             43
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(144) Variable = CSRNP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSRNP3 MUTATED        3      0      0
  CSRNP3 WILD-TYPE     63     65     14
D144V1, multiclass
        clus
vv       CSRNP3 MUTATED CSRNP3 WILD-TYPE
  CLUS_1              3               63
  CLUS_2              0               65
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSRNP3 MUTATED        1      1      0      2
  CSRNP3 WILD-TYPE     37     28     45     32
D144V2, multiclass
        clus
vv       CSRNP3 MUTATED CSRNP3 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              1               28
  CLUS_3              0               45
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSRNP3 MUTATED        1      0      1      0      0
  CSRNP3 WILD-TYPE     33     16     10     11     13
D144V3, multiclass
[1] "Remove cluster labels:" "CSRNP3 MUTATED"        
clus
  CSRNP3 MUTATED CSRNP3 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A545 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N       TCGA-HV-A5A6 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7652 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSRNP3 MUTATED        0      0      1      0      0      0      1
  CSRNP3 WILD-TYPE     12     17     20      9      6     14      5
D144V4, multiclass
[1] "Remove cluster labels:" "CSRNP3 MUTATED"        
clus
  CSRNP3 MUTATED CSRNP3 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A545 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N       TCGA-HV-A5A6 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7652 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" "CSRNP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSRNP3 MUTATED        0      2      2
  CSRNP3 WILD-TYPE     71     41     30
D144V5, multiclass
        clus
vv       CSRNP3 MUTATED CSRNP3 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              2               41
  CLUS_3              2               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSRNP3 MUTATED        2      0      2
  CSRNP3 WILD-TYPE     65     63     14
D144V6, multiclass
        clus
vv       CSRNP3 MUTATED CSRNP3 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              0               63
  CLUS_3              2               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSRNP3 MUTATED        0      2      1      1
  CSRNP3 WILD-TYPE     62     34     27     19
D144V7, multiclass
        clus
vv       CSRNP3 MUTATED CSRNP3 WILD-TYPE
  CLUS_1              0               62
  CLUS_2              2               34
  CLUS_3              1               27
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSRNP3 MUTATED        1      1      2
  CSRNP3 WILD-TYPE     88     34     20
D144V8, multiclass
        clus
vv       CSRNP3 MUTATED CSRNP3 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1               34
  CLUS_3              2               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSRNP3 MUTATED        1      3      0
  CSRNP3 WILD-TYPE     61     48     31
D144V9, multiclass
        clus
vv       CSRNP3 MUTATED CSRNP3 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              3               48
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSRNP3 MUTATED        0      2      2
  CSRNP3 WILD-TYPE     75     43     22
D144V10, multiclass
        clus
vv       CSRNP3 MUTATED CSRNP3 WILD-TYPE
  CLUS_1              0               75
  CLUS_2              2               43
  CLUS_3              2               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(145) Variable = PHF15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF15 MUTATED        2      2      0
  PHF15 WILD-TYPE     64     63     14
D145V1, multiclass
        clus
vv       PHF15 MUTATED PHF15 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF15 MUTATED        2      0      1      1
  PHF15 WILD-TYPE     36     29     44     33
D145V2, multiclass
        clus
vv       PHF15 MUTATED PHF15 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF15 MUTATED        1      1      2      0      0
  PHF15 WILD-TYPE     33     15      9     11     13
D145V3, multiclass
        clus
vv       PHF15 MUTATED PHF15 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              15
  CLUS_3             2               9
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHF15 MUTATED        1      1      0      1      0      0      1
  PHF15 WILD-TYPE     11     16     21      8      6     14      5
D145V4, multiclass
        clus
vv       PHF15 MUTATED PHF15 WILD-TYPE
  CLUS_1             1              11
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             1               8
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF15 MUTATED        1      3      0
  PHF15 WILD-TYPE     70     40     32
D145V5, multiclass
        clus
vv       PHF15 MUTATED PHF15 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             3              40
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF15 MUTATED        3      1      0
  PHF15 WILD-TYPE     64     62     16
D145V6, multiclass
        clus
vv       PHF15 MUTATED PHF15 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             1              62
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF15 MUTATED        1      2      1      0
  PHF15 WILD-TYPE     61     34     27     20
D145V7, multiclass
        clus
vv       PHF15 MUTATED PHF15 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              34
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF15 MUTATED        4      0      0
  PHF15 WILD-TYPE     85     35     22
D145V8, multiclass
        clus
vv       PHF15 MUTATED PHF15 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF15 MUTATED        2      1      1
  PHF15 WILD-TYPE     60     50     30
D145V9, multiclass
        clus
vv       PHF15 MUTATED PHF15 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              50
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF15 MUTATED        2      2      0
  PHF15 WILD-TYPE     73     43     24
D145V10, multiclass
        clus
vv       PHF15 MUTATED PHF15 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(146) Variable = ZBTB4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZBTB4 MUTATED        2      2      0
  ZBTB4 WILD-TYPE     64     63     14
D146V1, multiclass
        clus
vv       ZBTB4 MUTATED ZBTB4 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB4 MUTATED        2      0      2      0
  ZBTB4 WILD-TYPE     36     29     43     34
D146V2, multiclass
        clus
vv       ZBTB4 MUTATED ZBTB4 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             2              43
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB4 MUTATED        0      2      1      0      0
  ZBTB4 WILD-TYPE     34     14     10     11     13
D146V3, multiclass
        clus
vv       ZBTB4 MUTATED ZBTB4 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             2              14
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZBTB4 MUTATED        0      1      1      0      0      0      1
  ZBTB4 WILD-TYPE     12     16     20      9      6     14      5
D146V4, multiclass
        clus
vv       ZBTB4 MUTATED ZBTB4 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZBTB4 MUTATED        3      1      0
  ZBTB4 WILD-TYPE     68     42     32
D146V5, multiclass
        clus
vv       ZBTB4 MUTATED ZBTB4 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZBTB4 MUTATED        1      3      0
  ZBTB4 WILD-TYPE     66     60     16
D146V6, multiclass
        clus
vv       ZBTB4 MUTATED ZBTB4 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB4 MUTATED        3      1      0      0
  ZBTB4 WILD-TYPE     59     35     28     20
D146V7, multiclass
        clus
vv       ZBTB4 MUTATED ZBTB4 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              35
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZBTB4 MUTATED        4      0      0
  ZBTB4 WILD-TYPE     85     35     22
D146V8, multiclass
        clus
vv       ZBTB4 MUTATED ZBTB4 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZBTB4 MUTATED        4      0      0
  ZBTB4 WILD-TYPE     58     51     31
D146V9, multiclass
        clus
vv       ZBTB4 MUTATED ZBTB4 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              51
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZBTB4 MUTATED        2      2      0
  ZBTB4 WILD-TYPE     73     43     24
D146V10, multiclass
        clus
vv       ZBTB4 MUTATED ZBTB4 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(147) Variable = RSPO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPO1 MUTATED        2      1      0
  RSPO1 WILD-TYPE     64     64     14
D147V1, multiclass
        clus
vv       RSPO1 MUTATED RSPO1 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPO1 MUTATED        1      0      1      1
  RSPO1 WILD-TYPE     37     29     44     33
D147V2, multiclass
        clus
vv       RSPO1 MUTATED RSPO1 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSPO1 MUTATED        1      0      1      0      0
  RSPO1 WILD-TYPE     33     16     10     11     13
D147V3, multiclass
[1] "Remove cluster labels:" "RSPO1 MUTATED"         
clus
  RSPO1 MUTATED RSPO1 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-A44G 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N      TCGA-HV-A5A6 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7652 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RSPO1 MUTATED        0      0      0      0      0      0      2
  RSPO1 WILD-TYPE     12     17     21      9      6     14      4
D147V4, multiclass
[1] "Remove cluster labels:" "RSPO1 MUTATED"         
clus
  RSPO1 MUTATED RSPO1 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-A44G 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N      TCGA-HV-A5A6 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7652 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" "RSPO1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPO1 MUTATED        1      1      1
  RSPO1 WILD-TYPE     70     42     31
D147V5, multiclass
        clus
vv       RSPO1 MUTATED RSPO1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              42
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPO1 MUTATED        2      1      0
  RSPO1 WILD-TYPE     65     62     16
D147V6, multiclass
        clus
vv       RSPO1 MUTATED RSPO1 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              62
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPO1 MUTATED        1      1      1      0
  RSPO1 WILD-TYPE     61     35     27     20
D147V7, multiclass
        clus
vv       RSPO1 MUTATED RSPO1 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPO1 MUTATED        2      1      0
  RSPO1 WILD-TYPE     87     34     22
D147V8, multiclass
        clus
vv       RSPO1 MUTATED RSPO1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPO1 MUTATED        2      1      0
  RSPO1 WILD-TYPE     60     50     31
D147V9, multiclass
        clus
vv       RSPO1 MUTATED RSPO1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPO1 MUTATED        1      1      1
  RSPO1 WILD-TYPE     74     44     23
D147V10, multiclass
        clus
vv       RSPO1 MUTATED RSPO1 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             1              44
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(148) Variable = WWP2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWP2 MUTATED        4      1      0
  WWP2 WILD-TYPE     62     64     14
D148V1, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            4             62
  CLUS_2            1             64
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWP2 MUTATED        1      1      1      2
  WWP2 WILD-TYPE     37     28     44     32
D148V2, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            1             37
  CLUS_2            1             28
  CLUS_3            1             44
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WWP2 MUTATED        0      1      0      1      0
  WWP2 WILD-TYPE     34     15     11     10     13
D148V3, multiclass
[1] "Remove cluster labels:" "WWP2 MUTATED"          
clus
  WWP2 MUTATED WWP2 WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-HZ-8315     TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-7891     TCGA-IB-7893     TCGA-IB-8126     TCGA-IB-8127 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUP     TCGA-IB-AAUS 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77G     TCGA-XD-AAUL     TCGA-XN-A8T5 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WWP2 MUTATED        0      0      2      0      0      0      0
  WWP2 WILD-TYPE     12     17     19      9      6     14      6
D148V4, multiclass
[1] "Remove cluster labels:" "WWP2 MUTATED"          
clus
  WWP2 MUTATED WWP2 WILD-TYPE 
             2             83 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-HZ-8315     TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-7891     TCGA-IB-7893     TCGA-IB-8126     TCGA-IB-8127 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUP     TCGA-IB-AAUS 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77G     TCGA-XD-AAUL     TCGA-XN-A8T5 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"WWP2 WILD-TYPE" "WWP2 WILD-TYPE" "WWP2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWP2 MUTATED        2      2      1
  WWP2 WILD-TYPE     69     41     31
D148V5, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             41
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWP2 MUTATED        1      3      1
  WWP2 WILD-TYPE     66     60     15
D148V6, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            3             60
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWP2 MUTATED        2      1      1      1
  WWP2 WILD-TYPE     60     35     27     19
D148V7, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             35
  CLUS_3            1             27
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWP2 MUTATED        3      1      1
  WWP2 WILD-TYPE     86     34     21
D148V8, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            1             34
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWP2 MUTATED        2      3      0
  WWP2 WILD-TYPE     60     48     31
D148V9, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            3             48
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWP2 MUTATED        3      1      1
  WWP2 WILD-TYPE     72     44     23
D148V10, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            3             72
  CLUS_2            1             44
  CLUS_3            1             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(149) Variable = CPNE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPNE2 MUTATED        3      0      0
  CPNE2 WILD-TYPE     63     65     14
D149V1, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             0              65
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPNE2 MUTATED        3      0      0      0
  CPNE2 WILD-TYPE     35     29     45     34
D149V2, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             0              29
  CLUS_3             0              45
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPNE2 MUTATED        1      0      1      1      0
  CPNE2 WILD-TYPE     33     16     10     10     13
D149V3, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CPNE2 MUTATED        0      0      2      0      0      0      1
  CPNE2 WILD-TYPE     12     17     19      9      6     14      5
D149V4, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             2              19
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPNE2 MUTATED        1      1      1
  CPNE2 WILD-TYPE     70     42     31
D149V5, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              42
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPNE2 MUTATED        1      1      1
  CPNE2 WILD-TYPE     66     62     15
D149V6, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             1              62
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPNE2 MUTATED        0      1      1      1
  CPNE2 WILD-TYPE     62     35     27     19
D149V7, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPNE2 MUTATED        2      0      1
  CPNE2 WILD-TYPE     87     35     21
D149V8, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             0              35
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPNE2 MUTATED        1      2      0
  CPNE2 WILD-TYPE     61     49     31
D149V9, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              49
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPNE2 MUTATED        1      1      1
  CPNE2 WILD-TYPE     74     44     23
D149V10, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             1              44
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(150) Variable = WDR36 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR36 MUTATED        3      0      0
  WDR36 WILD-TYPE     63     65     14
D150V1, multiclass
        clus
vv       WDR36 MUTATED WDR36 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             0              65
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR36 MUTATED        0      2      0      1
  WDR36 WILD-TYPE     38     27     45     33
D150V2, multiclass
        clus
vv       WDR36 MUTATED WDR36 WILD-TYPE
  CLUS_1             0              38
  CLUS_2             2              27
  CLUS_3             0              45
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR36 MUTATED        0      2      0      0      0
  WDR36 WILD-TYPE     34     14     11     11     13
D150V3, multiclass
[1] "Remove cluster labels:" "WDR36 MUTATED"         
clus
  WDR36 MUTATED WDR36 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-8001 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7651      TCGA-IB-7652 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR36 MUTATED        0      2      0      0      0      0      0
  WDR36 WILD-TYPE     12     15     21      9      6     14      6
D150V4, multiclass
[1] "Remove cluster labels:" "WDR36 MUTATED"         
clus
  WDR36 MUTATED WDR36 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-8001 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7651      TCGA-IB-7652 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"WDR36 WILD-TYPE" "WDR36 WILD-TYPE" "WDR36 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR36 MUTATED        1      2      0
  WDR36 WILD-TYPE     70     41     32
D150V5, multiclass
        clus
vv       WDR36 MUTATED WDR36 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              41
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR36 MUTATED        2      1      0
  WDR36 WILD-TYPE     65     62     16
D150V6, multiclass
        clus
vv       WDR36 MUTATED WDR36 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              62
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR36 MUTATED        0      2      1      0
  WDR36 WILD-TYPE     62     34     27     20
D150V7, multiclass
        clus
vv       WDR36 MUTATED WDR36 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             2              34
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR36 MUTATED        1      2      0
  WDR36 WILD-TYPE     88     33     22
D150V8, multiclass
        clus
vv       WDR36 MUTATED WDR36 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2              33
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR36 MUTATED        0      3      0
  WDR36 WILD-TYPE     62     48     31
D150V9, multiclass
        clus
vv       WDR36 MUTATED WDR36 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             3              48
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR36 MUTATED        1      2      0
  WDR36 WILD-TYPE     74     43     24
D150V10, multiclass
        clus
vv       WDR36 MUTATED WDR36 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(151) Variable = CYTH4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYTH4 MUTATED        1      2      0
  CYTH4 WILD-TYPE     65     63     14
D151V1, multiclass
        clus
vv       CYTH4 MUTATED CYTH4 WILD-TYPE
  CLUS_1             1              65
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYTH4 MUTATED        2      0      0      1
  CYTH4 WILD-TYPE     36     29     45     33
D151V2, multiclass
        clus
vv       CYTH4 MUTATED CYTH4 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             0              45
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYTH4 MUTATED        0      0      1      0      1
  CYTH4 WILD-TYPE     34     16     10     11     12
D151V3, multiclass
[1] "Remove cluster labels:" "CYTH4 MUTATED"         
clus
  CYTH4 MUTATED CYTH4 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYTH4 MUTATED        0      0      0      1      0      1      0
  CYTH4 WILD-TYPE     12     17     21      8      6     13      6
D151V4, multiclass
[1] "Remove cluster labels:" "CYTH4 MUTATED"         
clus
  CYTH4 MUTATED CYTH4 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-S4-A8RO      TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" "CYTH4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYTH4 MUTATED        2      1      0
  CYTH4 WILD-TYPE     69     42     32
D151V5, multiclass
        clus
vv       CYTH4 MUTATED CYTH4 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYTH4 MUTATED        2      1      0
  CYTH4 WILD-TYPE     65     62     16
D151V6, multiclass
        clus
vv       CYTH4 MUTATED CYTH4 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              62
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYTH4 MUTATED        1      1      1      0
  CYTH4 WILD-TYPE     61     35     27     20
D151V7, multiclass
        clus
vv       CYTH4 MUTATED CYTH4 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYTH4 MUTATED        2      1      0
  CYTH4 WILD-TYPE     87     34     22
D151V8, multiclass
        clus
vv       CYTH4 MUTATED CYTH4 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYTH4 MUTATED        1      1      1
  CYTH4 WILD-TYPE     61     50     30
D151V9, multiclass
        clus
vv       CYTH4 MUTATED CYTH4 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              50
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYTH4 MUTATED        0      3      0
  CYTH4 WILD-TYPE     75     42     24
D151V10, multiclass
        clus
vv       CYTH4 MUTATED CYTH4 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             3              42
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(152) Variable = BOC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BOC MUTATED        1      2      1
  BOC WILD-TYPE     65     63     13
D152V1, multiclass
        clus
vv       BOC MUTATED BOC WILD-TYPE
  CLUS_1           1            65
  CLUS_2           2            63
  CLUS_3           1            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BOC MUTATED        2      0      1      1
  BOC WILD-TYPE     36     29     44     33
D152V2, multiclass
        clus
vv       BOC MUTATED BOC WILD-TYPE
  CLUS_1           2            36
  CLUS_2           0            29
  CLUS_3           1            44
  CLUS_4           1            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BOC MUTATED        0      0      1      0      0
  BOC WILD-TYPE     34     16     10     11     13
D152V3, multiclass
[1] "Remove cluster labels:" "BOC MUTATED"           
clus
  BOC MUTATED BOC WILD-TYPE 
            1            84 
   TCGA-2L-AAQA    TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-3A-A9I5 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-6879    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A4P5 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-H6-A45N 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-HV-A5A6    TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7925    TCGA-HZ-8001 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005    TCGA-HZ-8315    TCGA-HZ-8519 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7646    TCGA-IB-7647 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-7649    TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-7888    TCGA-IB-7889    TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A7LX    TCGA-IB-A7M4 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP    TCGA-IB-AAUS 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-AAUU    TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5    TCGA-M8-A5N4 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-OE-A75W    TCGA-PZ-A5RE    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-RB-AA9M    TCGA-S4-A8RM    TCGA-S4-A8RO    TCGA-S4-A8RP    TCGA-US-A774 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77G    TCGA-XD-AAUL 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BOC MUTATED        0      0      0      0      0      0      1
  BOC WILD-TYPE     12     17     21      9      6     14      5
D152V4, multiclass
[1] "Remove cluster labels:" "BOC MUTATED"           
clus
  BOC MUTATED BOC WILD-TYPE 
            1            84 
   TCGA-2L-AAQA    TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-3A-A9I5 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-6879    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A4P5 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-H6-A45N 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-HV-A5A6    TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7925    TCGA-HZ-8001 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005    TCGA-HZ-8315    TCGA-HZ-8519 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7646    TCGA-IB-7647 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-7649    TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-7888    TCGA-IB-7889    TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A7LX    TCGA-IB-A7M4 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP    TCGA-IB-AAUS 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-IB-AAUU    TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5    TCGA-M8-A5N4 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-OE-A75W    TCGA-PZ-A5RE    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-RB-AA9M    TCGA-S4-A8RM    TCGA-S4-A8RO    TCGA-S4-A8RP    TCGA-US-A774 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77G    TCGA-XD-AAUL 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BOC MUTATED        2      1      1
  BOC WILD-TYPE     69     42     31
D152V5, multiclass
        clus
vv       BOC MUTATED BOC WILD-TYPE
  CLUS_1           2            69
  CLUS_2           1            42
  CLUS_3           1            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BOC MUTATED        2      2      0
  BOC WILD-TYPE     65     61     16
D152V6, multiclass
        clus
vv       BOC MUTATED BOC WILD-TYPE
  CLUS_1           2            65
  CLUS_2           2            61
  CLUS_3           0            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BOC MUTATED        2      1      1      0
  BOC WILD-TYPE     60     35     27     20
D152V7, multiclass
        clus
vv       BOC MUTATED BOC WILD-TYPE
  CLUS_1           2            60
  CLUS_2           1            35
  CLUS_3           1            27
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BOC MUTATED        3      0      1
  BOC WILD-TYPE     86     35     21
D152V8, multiclass
        clus
vv       BOC MUTATED BOC WILD-TYPE
  CLUS_1           3            86
  CLUS_2           0            35
  CLUS_3           1            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BOC MUTATED        2      1      1
  BOC WILD-TYPE     60     50     30
D152V9, multiclass
        clus
vv       BOC MUTATED BOC WILD-TYPE
  CLUS_1           2            60
  CLUS_2           1            50
  CLUS_3           1            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BOC MUTATED        2      1      1
  BOC WILD-TYPE     73     44     23
D152V10, multiclass
        clus
vv       BOC MUTATED BOC WILD-TYPE
  CLUS_1           2            73
  CLUS_2           1            44
  CLUS_3           1            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(153) Variable = C5ORF51 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF51 MUTATED        2      0      1
  C5ORF51 WILD-TYPE     64     65     13
D153V1, multiclass
        clus
vv       C5ORF51 MUTATED C5ORF51 WILD-TYPE
  CLUS_1               2                64
  CLUS_2               0                65
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF51 MUTATED        2      0      0      1
  C5ORF51 WILD-TYPE     36     29     45     33
D153V2, multiclass
        clus
vv       C5ORF51 MUTATED C5ORF51 WILD-TYPE
  CLUS_1               2                36
  CLUS_2               0                29
  CLUS_3               0                45
  CLUS_4               1                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C5ORF51 MUTATED        0      1      1      0      1
  C5ORF51 WILD-TYPE     34     15     10     11     12
D153V3, multiclass
        clus
vv       C5ORF51 MUTATED C5ORF51 WILD-TYPE
  CLUS_1               0                34
  CLUS_2               1                15
  CLUS_3               1                10
  CLUS_4               0                11
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C5ORF51 MUTATED        0      1      0      0      0      1      1
  C5ORF51 WILD-TYPE     12     16     21      9      6     13      5
D153V4, multiclass
        clus
vv       C5ORF51 MUTATED C5ORF51 WILD-TYPE
  CLUS_1               0                12
  CLUS_2               1                16
  CLUS_3               0                21
  CLUS_4               0                 9
  CLUS_5               0                 6
  CLUS_6               1                13
  CLUS_7               1                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF51 MUTATED        2      1      0
  C5ORF51 WILD-TYPE     69     42     32
D153V5, multiclass
        clus
vv       C5ORF51 MUTATED C5ORF51 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                42
  CLUS_3               0                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF51 MUTATED        1      2      0
  C5ORF51 WILD-TYPE     66     61     16
D153V6, multiclass
        clus
vv       C5ORF51 MUTATED C5ORF51 WILD-TYPE
  CLUS_1               1                66
  CLUS_2               2                61
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF51 MUTATED        0      1      2      0
  C5ORF51 WILD-TYPE     62     35     26     20
D153V7, multiclass
        clus
vv       C5ORF51 MUTATED C5ORF51 WILD-TYPE
  CLUS_1               0                62
  CLUS_2               1                35
  CLUS_3               2                26
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF51 MUTATED        3      0      0
  C5ORF51 WILD-TYPE     86     35     22
D153V8, multiclass
        clus
vv       C5ORF51 MUTATED C5ORF51 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               0                35
  CLUS_3               0                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF51 MUTATED        2      0      0
  C5ORF51 WILD-TYPE     60     51     31
D153V9, multiclass
[1] "Remove cluster labels:" "C5ORF51 MUTATED"       
clus
  C5ORF51 MUTATED C5ORF51 WILD-TYPE 
                2               142 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABR 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-2J-AABU        TCGA-2L-AAQA        TCGA-2L-AAQE        TCGA-2L-AAQI 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-2L-AAQJ        TCGA-2L-AAQL        TCGA-3A-A9I5        TCGA-3A-A9I7 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-3A-A9I9        TCGA-3A-A9IB        TCGA-3A-A9IC        TCGA-3A-A9IH 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3A-A9J0 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-6879        TCGA-F2-A44G 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-F2-A44H        TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A4P5 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-FB-A4P6        TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-FB-AAPS        TCGA-FB-AAPU        TCGA-FB-AAPY        TCGA-FB-AAPZ 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-FB-AAQ0        TCGA-FB-AAQ1        TCGA-FB-AAQ2        TCGA-FB-AAQ3 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HV-A7OL        TCGA-HV-AA8V 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HV-AA8X        TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7925 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HZ-8315        TCGA-HZ-8317        TCGA-HZ-8519        TCGA-HZ-8636 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HZ-8637        TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-HZ-A77O        TCGA-HZ-A77P 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HZ-A77Q        TCGA-HZ-A8P0        TCGA-HZ-A8P1        TCGA-HZ-A9TJ 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7652        TCGA-IB-7886        TCGA-IB-7887 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A6UG        TCGA-IB-A7LX 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-AAUP        TCGA-IB-AAUQ        TCGA-IB-AAUR        TCGA-IB-AAUS 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-AAUT        TCGA-IB-AAUU        TCGA-LB-A7SX        TCGA-LB-A8F3 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-M8-A5N4        TCGA-OE-A75W        TCGA-PZ-A5RE 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-S4-A8RM        TCGA-S4-A8RO        TCGA-S4-A8RP        TCGA-US-A774 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-XD-AAUG        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-XN-A8T3        TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-YY-A8LH        TCGA-Z5-AAPL 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF51 MUTATED        1      1      0
  C5ORF51 WILD-TYPE     74     44     24
D153V10, multiclass
[1] "Remove cluster labels:" "C5ORF51 MUTATED"       
clus
  C5ORF51 MUTATED C5ORF51 WILD-TYPE 
                2               142 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABR 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-2J-AABU        TCGA-2L-AAQA        TCGA-2L-AAQE        TCGA-2L-AAQI 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-2L-AAQJ        TCGA-2L-AAQL        TCGA-3A-A9I5        TCGA-3A-A9I7 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-3A-A9I9        TCGA-3A-A9IB        TCGA-3A-A9IC        TCGA-3A-A9IH 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3A-A9J0 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-6879        TCGA-F2-A44G 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-F2-A44H        TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A4P5 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-FB-A4P6        TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-FB-AAPS        TCGA-FB-AAPU        TCGA-FB-AAPY        TCGA-FB-AAPZ 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-FB-AAQ0        TCGA-FB-AAQ1        TCGA-FB-AAQ2        TCGA-FB-AAQ3 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HV-A7OL        TCGA-HV-AA8V 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HV-AA8X        TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7925 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HZ-8315        TCGA-HZ-8317        TCGA-HZ-8519        TCGA-HZ-8636 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HZ-8637        TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-HZ-A77O        TCGA-HZ-A77P 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-HZ-A77Q        TCGA-HZ-A8P0        TCGA-HZ-A8P1        TCGA-HZ-A9TJ 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7652        TCGA-IB-7886        TCGA-IB-7887 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A6UG        TCGA-IB-A7LX 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-AAUP        TCGA-IB-AAUQ        TCGA-IB-AAUR        TCGA-IB-AAUS 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-IB-AAUT        TCGA-IB-AAUU        TCGA-LB-A7SX        TCGA-LB-A8F3 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-M8-A5N4        TCGA-OE-A75W        TCGA-PZ-A5RE 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-S4-A8RM        TCGA-S4-A8RO        TCGA-S4-A8RP        TCGA-US-A774 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-XD-AAUG        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-XN-A8T3        TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 
       TCGA-YY-A8LH        TCGA-Z5-AAPL 
"C5ORF51 WILD-TYPE" "C5ORF51 WILD-TYPE" 

Clustering(154) Variable = LILRB2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LILRB2 MUTATED        4      0      0
  LILRB2 WILD-TYPE     62     65     14
D154V1, multiclass
        clus
vv       LILRB2 MUTATED LILRB2 WILD-TYPE
  CLUS_1              4               62
  CLUS_2              0               65
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LILRB2 MUTATED        1      1      0      2
  LILRB2 WILD-TYPE     37     28     45     32
D154V2, multiclass
        clus
vv       LILRB2 MUTATED LILRB2 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              1               28
  CLUS_3              0               45
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LILRB2 MUTATED        1      0      1      1      0
  LILRB2 WILD-TYPE     33     16     10     10     13
D154V3, multiclass
        clus
vv       LILRB2 MUTATED LILRB2 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              0               16
  CLUS_3              1               10
  CLUS_4              1               10
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LILRB2 MUTATED        0      0      1      0      0      1      1
  LILRB2 WILD-TYPE     12     17     20      9      6     13      5
D154V4, multiclass
        clus
vv       LILRB2 MUTATED LILRB2 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              0               17
  CLUS_3              1               20
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LILRB2 MUTATED        0      2      2
  LILRB2 WILD-TYPE     71     41     30
D154V5, multiclass
        clus
vv       LILRB2 MUTATED LILRB2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              2               41
  CLUS_3              2               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LILRB2 MUTATED        2      0      2
  LILRB2 WILD-TYPE     65     63     14
D154V6, multiclass
        clus
vv       LILRB2 MUTATED LILRB2 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              0               63
  CLUS_3              2               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LILRB2 MUTATED        0      1      1      2
  LILRB2 WILD-TYPE     62     35     27     18
D154V7, multiclass
        clus
vv       LILRB2 MUTATED LILRB2 WILD-TYPE
  CLUS_1              0               62
  CLUS_2              1               35
  CLUS_3              1               27
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LILRB2 MUTATED        1      1      2
  LILRB2 WILD-TYPE     88     34     20
D154V8, multiclass
        clus
vv       LILRB2 MUTATED LILRB2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1               34
  CLUS_3              2               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LILRB2 MUTATED        1      3      0
  LILRB2 WILD-TYPE     61     48     31
D154V9, multiclass
        clus
vv       LILRB2 MUTATED LILRB2 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              3               48
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LILRB2 MUTATED        0      2      2
  LILRB2 WILD-TYPE     75     43     22
D154V10, multiclass
        clus
vv       LILRB2 MUTATED LILRB2 WILD-TYPE
  CLUS_1              0               75
  CLUS_2              2               43
  CLUS_3              2               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(155) Variable = FLVCR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FLVCR1 MUTATED        2      1      0
  FLVCR1 WILD-TYPE     64     64     14
D155V1, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              1               64
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLVCR1 MUTATED        1      0      1      1
  FLVCR1 WILD-TYPE     37     29     44     33
D155V2, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              0               29
  CLUS_3              1               44
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLVCR1 MUTATED        0      0      1      1      0
  FLVCR1 WILD-TYPE     34     16     10     10     13
D155V3, multiclass
[1] "Remove cluster labels:" "FLVCR1 MUTATED"        
clus
  FLVCR1 MUTATED FLVCR1 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IX 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879       TCGA-F2-A44G 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A545 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N       TCGA-HV-A5A6 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7652 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FLVCR1 MUTATED        0      0      0      0      1      0      1
  FLVCR1 WILD-TYPE     12     17     21      9      5     14      5
D155V4, multiclass
[1] "Remove cluster labels:" "FLVCR1 MUTATED"        
clus
  FLVCR1 MUTATED FLVCR1 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IX 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879       TCGA-F2-A44G 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A545 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N       TCGA-HV-A5A6 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7652 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FLVCR1 MUTATED        2      1      0
  FLVCR1 WILD-TYPE     69     42     32
D155V5, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               42
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FLVCR1 MUTATED        2      1      0
  FLVCR1 WILD-TYPE     65     62     16
D155V6, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              1               62
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLVCR1 MUTATED        1      1      1      0
  FLVCR1 WILD-TYPE     61     35     27     20
D155V7, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              1               35
  CLUS_3              1               27
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FLVCR1 MUTATED        3      0      0
  FLVCR1 WILD-TYPE     86     35     22
D155V8, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FLVCR1 MUTATED        2      0      1
  FLVCR1 WILD-TYPE     60     51     30
D155V9, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               51
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FLVCR1 MUTATED        1      2      0
  FLVCR1 WILD-TYPE     74     43     24
D155V10, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              2               43
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(156) Variable = ZNF483 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF483 MUTATED        1      3      0
  ZNF483 WILD-TYPE     65     62     14
D156V1, multiclass
        clus
vv       ZNF483 MUTATED ZNF483 WILD-TYPE
  CLUS_1              1               65
  CLUS_2              3               62
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF483 MUTATED        1      1      1      1
  ZNF483 WILD-TYPE     37     28     44     33
D156V2, multiclass
        clus
vv       ZNF483 MUTATED ZNF483 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              1               28
  CLUS_3              1               44
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF483 MUTATED        0      0      1      1      1
  ZNF483 WILD-TYPE     34     16     10     10     12
D156V3, multiclass
        clus
vv       ZNF483 MUTATED ZNF483 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              0               16
  CLUS_3              1               10
  CLUS_4              1               10
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF483 MUTATED        0      0      1      1      0      1      0
  ZNF483 WILD-TYPE     12     17     20      8      6     13      6
D156V4, multiclass
        clus
vv       ZNF483 MUTATED ZNF483 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              0               17
  CLUS_3              1               20
  CLUS_4              1                8
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              0                6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF483 MUTATED        2      2      0
  ZNF483 WILD-TYPE     69     41     32
D156V5, multiclass
        clus
vv       ZNF483 MUTATED ZNF483 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               41
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF483 MUTATED        3      1      0
  ZNF483 WILD-TYPE     64     62     16
D156V6, multiclass
        clus
vv       ZNF483 MUTATED ZNF483 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              1               62
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF483 MUTATED        2      2      0      0
  ZNF483 WILD-TYPE     60     34     28     20
D156V7, multiclass
        clus
vv       ZNF483 MUTATED ZNF483 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              2               34
  CLUS_3              0               28
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF483 MUTATED        3      1      0
  ZNF483 WILD-TYPE     86     34     22
D156V8, multiclass
        clus
vv       ZNF483 MUTATED ZNF483 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              1               34
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF483 MUTATED        3      1      0
  ZNF483 WILD-TYPE     59     50     31
D156V9, multiclass
        clus
vv       ZNF483 MUTATED ZNF483 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               50
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF483 MUTATED        1      3      0
  ZNF483 WILD-TYPE     74     42     24
D156V10, multiclass
        clus
vv       ZNF483 MUTATED ZNF483 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              3               42
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(157) Variable = NDUFV2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        0      3      0
  NDUFV2 WILD-TYPE     66     62     14
D157V1, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              0               66
  CLUS_2              3               62
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFV2 MUTATED        2      0      1      0
  NDUFV2 WILD-TYPE     36     29     44     34
D157V2, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              0               29
  CLUS_3              1               44
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDUFV2 MUTATED        3      0      0      0      0
  NDUFV2 WILD-TYPE     31     16     11     11     13
D157V3, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              3               31
  CLUS_2              0               16
  CLUS_3              0               11
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NDUFV2 MUTATED        2      0      0      0      0      0      1
  NDUFV2 WILD-TYPE     10     17     21      9      6     14      5
D157V4, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              2               10
  CLUS_2              0               17
  CLUS_3              0               21
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        3      0      0
  NDUFV2 WILD-TYPE     68     43     32
D157V5, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               43
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        0      3      0
  NDUFV2 WILD-TYPE     67     60     16
D157V6, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              0               67
  CLUS_2              3               60
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFV2 MUTATED        3      0      0      0
  NDUFV2 WILD-TYPE     59     36     28     20
D157V7, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               36
  CLUS_3              0               28
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        3      0      0
  NDUFV2 WILD-TYPE     86     35     22
D157V8, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        2      0      1
  NDUFV2 WILD-TYPE     60     51     30
D157V9, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               51
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        3      0      0
  NDUFV2 WILD-TYPE     72     45     24
D157V10, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              3               72
  CLUS_2              0               45
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(158) Variable = PSMB4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB4 MUTATED        2      1      1
  PSMB4 WILD-TYPE     64     64     13
D158V1, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMB4 MUTATED        2      0      0      2
  PSMB4 WILD-TYPE     36     29     45     32
D158V2, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             0              45
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSMB4 MUTATED        3      0      0      0      0
  PSMB4 WILD-TYPE     31     16     11     11     13
D158V3, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             0              16
  CLUS_3             0              11
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSMB4 MUTATED        1      0      1      0      0      1      0
  PSMB4 WILD-TYPE     11     17     20      9      6     13      6
D158V4, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             1              11
  CLUS_2             0              17
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             0               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB4 MUTATED        3      0      1
  PSMB4 WILD-TYPE     68     43     31
D158V5, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              43
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB4 MUTATED        1      2      1
  PSMB4 WILD-TYPE     66     61     15
D158V6, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              61
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMB4 MUTATED        2      0      1      1
  PSMB4 WILD-TYPE     60     36     27     19
D158V7, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              36
  CLUS_3             1              27
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB4 MUTATED        4      0      0
  PSMB4 WILD-TYPE     85     35     22
D158V8, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB4 MUTATED        2      2      0
  PSMB4 WILD-TYPE     60     49     31
D158V9, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              49
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB4 MUTATED        3      1      0
  PSMB4 WILD-TYPE     72     44     24
D158V10, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(159) Variable = KIAA1045 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1045 MUTATED        4      1      0
  KIAA1045 WILD-TYPE     62     64     14
D159V1, multiclass
        clus
vv       KIAA1045 MUTATED KIAA1045 WILD-TYPE
  CLUS_1                4                 62
  CLUS_2                1                 64
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1045 MUTATED        1      1      0      3
  KIAA1045 WILD-TYPE     37     28     45     31
D159V2, multiclass
        clus
vv       KIAA1045 MUTATED KIAA1045 WILD-TYPE
  CLUS_1                1                 37
  CLUS_2                1                 28
  CLUS_3                0                 45
  CLUS_4                3                 31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1045 MUTATED        0      1      1      1      1
  KIAA1045 WILD-TYPE     34     15     10     10     12
D159V3, multiclass
        clus
vv       KIAA1045 MUTATED KIAA1045 WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                1                 15
  CLUS_3                1                 10
  CLUS_4                1                 10
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1045 MUTATED        0      1      0      0      1      1      1
  KIAA1045 WILD-TYPE     12     16     21      9      5     13      5
D159V4, multiclass
        clus
vv       KIAA1045 MUTATED KIAA1045 WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                1                 16
  CLUS_3                0                 21
  CLUS_4                0                  9
  CLUS_5                1                  5
  CLUS_6                1                 13
  CLUS_7                1                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1045 MUTATED        1      1      3
  KIAA1045 WILD-TYPE     70     42     29
D159V5, multiclass
        clus
vv       KIAA1045 MUTATED KIAA1045 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                1                 42
  CLUS_3                3                 29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1045 MUTATED        4      1      0
  KIAA1045 WILD-TYPE     63     62     16
D159V6, multiclass
        clus
vv       KIAA1045 MUTATED KIAA1045 WILD-TYPE
  CLUS_1                4                 63
  CLUS_2                1                 62
  CLUS_3                0                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1045 MUTATED        0      2      3      0
  KIAA1045 WILD-TYPE     62     34     25     20
D159V7, multiclass
        clus
vv       KIAA1045 MUTATED KIAA1045 WILD-TYPE
  CLUS_1                0                 62
  CLUS_2                2                 34
  CLUS_3                3                 25
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1045 MUTATED        2      2      1
  KIAA1045 WILD-TYPE     87     33     21
D159V8, multiclass
        clus
vv       KIAA1045 MUTATED KIAA1045 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                2                 33
  CLUS_3                1                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1045 MUTATED        2      3      0
  KIAA1045 WILD-TYPE     60     48     31
D159V9, multiclass
        clus
vv       KIAA1045 MUTATED KIAA1045 WILD-TYPE
  CLUS_1                2                 60
  CLUS_2                3                 48
  CLUS_3                0                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1045 MUTATED        1      2      2
  KIAA1045 WILD-TYPE     74     43     22
D159V10, multiclass
        clus
vv       KIAA1045 MUTATED KIAA1045 WILD-TYPE
  CLUS_1                1                 74
  CLUS_2                2                 43
  CLUS_3                2                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(160) Variable = KLK15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK15 MUTATED        3      1      1
  KLK15 WILD-TYPE     63     64     13
D160V1, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK15 MUTATED        4      1      0      0
  KLK15 WILD-TYPE     34     28     45     34
D160V2, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             4              34
  CLUS_2             1              28
  CLUS_3             0              45
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLK15 MUTATED        0      0      1      1      0
  KLK15 WILD-TYPE     34     16     10     10     13
D160V3, multiclass
[1] "Remove cluster labels:" "KLK15 MUTATED"         
clus
  KLK15 MUTATED KLK15 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N      TCGA-HV-A5A6 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7652 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLK15 MUTATED        0      0      1      0      0      0      1
  KLK15 WILD-TYPE     12     17     20      9      6     14      5
D160V4, multiclass
[1] "Remove cluster labels:" "KLK15 MUTATED"         
clus
  KLK15 MUTATED KLK15 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879      TCGA-F2-A44G 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N      TCGA-HV-A5A6 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7652 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-M8-A5N4 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"KLK15 WILD-TYPE" "KLK15 WILD-TYPE" "KLK15 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK15 MUTATED        1      3      1
  KLK15 WILD-TYPE     70     40     31
D160V5, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             3              40
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK15 MUTATED        3      1      1
  KLK15 WILD-TYPE     64     62     15
D160V6, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             1              62
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK15 MUTATED        1      3      0      1
  KLK15 WILD-TYPE     61     33     28     19
D160V7, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             3              33
  CLUS_3             0              28
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK15 MUTATED        2      2      1
  KLK15 WILD-TYPE     87     33     21
D160V8, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2              33
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK15 MUTATED        2      2      1
  KLK15 WILD-TYPE     60     49     30
D160V9, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              49
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK15 MUTATED        1      3      1
  KLK15 WILD-TYPE     74     42     23
D160V10, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             3              42
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(161) Variable = ZNF660 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF660 MUTATED        3      0      0
  ZNF660 WILD-TYPE     63     65     14
D161V1, multiclass
        clus
vv       ZNF660 MUTATED ZNF660 WILD-TYPE
  CLUS_1              3               63
  CLUS_2              0               65
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF660 MUTATED        2      0      0      1
  ZNF660 WILD-TYPE     36     29     45     33
D161V2, multiclass
        clus
vv       ZNF660 MUTATED ZNF660 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              0               29
  CLUS_3              0               45
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF660 MUTATED        1      1      1      0      0
  ZNF660 WILD-TYPE     33     15     10     11     13
D161V3, multiclass
        clus
vv       ZNF660 MUTATED ZNF660 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              1               15
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF660 MUTATED        0      1      0      0      0      1      1
  ZNF660 WILD-TYPE     12     16     21      9      6     13      5
D161V4, multiclass
        clus
vv       ZNF660 MUTATED ZNF660 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              1               16
  CLUS_3              0               21
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF660 MUTATED        1      2      0
  ZNF660 WILD-TYPE     70     41     32
D161V5, multiclass
        clus
vv       ZNF660 MUTATED ZNF660 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              2               41
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF660 MUTATED        2      1      0
  ZNF660 WILD-TYPE     65     62     16
D161V6, multiclass
        clus
vv       ZNF660 MUTATED ZNF660 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              1               62
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF660 MUTATED        0      2      1      0
  ZNF660 WILD-TYPE     62     34     27     20
D161V7, multiclass
        clus
vv       ZNF660 MUTATED ZNF660 WILD-TYPE
  CLUS_1              0               62
  CLUS_2              2               34
  CLUS_3              1               27
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF660 MUTATED        2      1      0
  ZNF660 WILD-TYPE     87     34     22
D161V8, multiclass
        clus
vv       ZNF660 MUTATED ZNF660 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              1               34
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF660 MUTATED        2      1      0
  ZNF660 WILD-TYPE     60     50     31
D161V9, multiclass
        clus
vv       ZNF660 MUTATED ZNF660 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               50
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF660 MUTATED        1      2      0
  ZNF660 WILD-TYPE     74     43     24
D161V10, multiclass
        clus
vv       ZNF660 MUTATED ZNF660 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              2               43
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(162) Variable = CCDC87 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC87 MUTATED        1      1      1
  CCDC87 WILD-TYPE     65     64     13
D162V1, multiclass
        clus
vv       CCDC87 MUTATED CCDC87 WILD-TYPE
  CLUS_1              1               65
  CLUS_2              1               64
  CLUS_3              1               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC87 MUTATED        0      0      2      1
  CCDC87 WILD-TYPE     38     29     43     33
D162V2, multiclass
        clus
vv       CCDC87 MUTATED CCDC87 WILD-TYPE
  CLUS_1              0               38
  CLUS_2              0               29
  CLUS_3              2               43
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC87 MUTATED        1      1      0      0      1
  CCDC87 WILD-TYPE     33     15     11     11     12
D162V3, multiclass
        clus
vv       CCDC87 MUTATED CCDC87 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              1               15
  CLUS_3              0               11
  CLUS_4              0               11
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC87 MUTATED        1      1      0      0      1      0      0
  CCDC87 WILD-TYPE     11     16     21      9      5     14      6
D162V4, multiclass
        clus
vv       CCDC87 MUTATED CCDC87 WILD-TYPE
  CLUS_1              1               11
  CLUS_2              1               16
  CLUS_3              0               21
  CLUS_4              0                9
  CLUS_5              1                5
  CLUS_6              0               14
  CLUS_7              0                6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC87 MUTATED        2      0      1
  CCDC87 WILD-TYPE     69     43     31
D162V5, multiclass
        clus
vv       CCDC87 MUTATED CCDC87 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               43
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC87 MUTATED        1      2      0
  CCDC87 WILD-TYPE     66     61     16
D162V6, multiclass
        clus
vv       CCDC87 MUTATED CCDC87 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              2               61
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC87 MUTATED        2      0      1      0
  CCDC87 WILD-TYPE     60     36     27     20
D162V7, multiclass
        clus
vv       CCDC87 MUTATED CCDC87 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               36
  CLUS_3              1               27
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC87 MUTATED        2      0      1
  CCDC87 WILD-TYPE     87     35     21
D162V8, multiclass
        clus
vv       CCDC87 MUTATED CCDC87 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              0               35
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC87 MUTATED        1      1      1
  CCDC87 WILD-TYPE     61     50     30
D162V9, multiclass
        clus
vv       CCDC87 MUTATED CCDC87 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              1               50
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC87 MUTATED        2      0      1
  CCDC87 WILD-TYPE     73     45     23
D162V10, multiclass
        clus
vv       CCDC87 MUTATED CCDC87 WILD-TYPE
  CLUS_1              2               73
  CLUS_2              0               45
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(163) Variable = KIF4B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF4B MUTATED        3      1      1
  KIF4B WILD-TYPE     63     64     13
D163V1, multiclass
        clus
vv       KIF4B MUTATED KIF4B WILD-TYPE
  CLUS_1             3              63
  CLUS_2             1              64
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF4B MUTATED        2      1      1      1
  KIF4B WILD-TYPE     36     28     44     33
D163V2, multiclass
        clus
vv       KIF4B MUTATED KIF4B WILD-TYPE
  CLUS_1             2              36
  CLUS_2             1              28
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF4B MUTATED        0      2      1      1      0
  KIF4B WILD-TYPE     34     14     10     10     13
D163V3, multiclass
        clus
vv       KIF4B MUTATED KIF4B WILD-TYPE
  CLUS_1             0              34
  CLUS_2             2              14
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIF4B MUTATED        0      2      1      0      0      0      1
  KIF4B WILD-TYPE     12     15     20      9      6     14      5
D163V4, multiclass
        clus
vv       KIF4B MUTATED KIF4B WILD-TYPE
  CLUS_1             0              12
  CLUS_2             2              15
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF4B MUTATED        2      2      1
  KIF4B WILD-TYPE     69     41     31
D163V5, multiclass
        clus
vv       KIF4B MUTATED KIF4B WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              41
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF4B MUTATED        2      2      1
  KIF4B WILD-TYPE     65     61     15
D163V6, multiclass
        clus
vv       KIF4B MUTATED KIF4B WILD-TYPE
  CLUS_1             2              65
  CLUS_2             2              61
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF4B MUTATED        1      2      1      1
  KIF4B WILD-TYPE     61     34     27     19
D163V7, multiclass
        clus
vv       KIF4B MUTATED KIF4B WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              34
  CLUS_3             1              27
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF4B MUTATED        3      1      1
  KIF4B WILD-TYPE     86     34     21
D163V8, multiclass
        clus
vv       KIF4B MUTATED KIF4B WILD-TYPE
  CLUS_1             3              86
  CLUS_2             1              34
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF4B MUTATED        3      1      1
  KIF4B WILD-TYPE     59     50     30
D163V9, multiclass
        clus
vv       KIF4B MUTATED KIF4B WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              50
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF4B MUTATED        2      2      1
  KIF4B WILD-TYPE     73     43     23
D163V10, multiclass
        clus
vv       KIF4B MUTATED KIF4B WILD-TYPE
  CLUS_1             2              73
  CLUS_2             2              43
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(164) Variable = ENPP7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP7 MUTATED        4      1      0
  ENPP7 WILD-TYPE     62     64     14
D164V1, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             4              62
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP7 MUTATED        4      0      1      0
  ENPP7 WILD-TYPE     34     29     44     34
D164V2, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             4              34
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENPP7 MUTATED        1      1      1      1      0
  ENPP7 WILD-TYPE     33     15     10     10     13
D164V3, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENPP7 MUTATED        0      0      3      0      0      0      1
  ENPP7 WILD-TYPE     12     17     18      9      6     14      5
D164V4, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             3              18
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP7 MUTATED        4      1      0
  ENPP7 WILD-TYPE     67     42     32
D164V5, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP7 MUTATED        2      3      0
  ENPP7 WILD-TYPE     65     60     16
D164V6, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP7 MUTATED        3      1      1      0
  ENPP7 WILD-TYPE     59     35     27     20
D164V7, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              35
  CLUS_3             1              27
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP7 MUTATED        5      0      0
  ENPP7 WILD-TYPE     84     35     22
D164V8, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP7 MUTATED        4      1      0
  ENPP7 WILD-TYPE     58     50     31
D164V9, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              50
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP7 MUTATED        4      1      0
  ENPP7 WILD-TYPE     71     44     24
D164V10, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             4              71
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(165) Variable = TNRC6C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        4      2      0
  TNRC6C WILD-TYPE     62     63     14
D165V1, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              4               62
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        2      3      1      0
  TNRC6C WILD-TYPE     36     26     44     34
D165V2, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              2               36
  CLUS_2              3               26
  CLUS_3              1               44
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC6C MUTATED        0      0      2      1      0
  TNRC6C WILD-TYPE     34     16      9     10     13
D165V3, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              0               34
  CLUS_2              0               16
  CLUS_3              2                9
  CLUS_4              1               10
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNRC6C MUTATED        0      0      1      1      0      0      1
  TNRC6C WILD-TYPE     12     17     20      8      6     14      5
D165V4, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              0               12
  CLUS_2              0               17
  CLUS_3              1               20
  CLUS_4              1                8
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        1      4      1
  TNRC6C WILD-TYPE     70     39     31
D165V5, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               39
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        4      1      1
  TNRC6C WILD-TYPE     63     62     15
D165V6, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              4               63
  CLUS_2              1               62
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        1      3      1      1
  TNRC6C WILD-TYPE     61     33     27     19
D165V7, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              1               61
  CLUS_2              3               33
  CLUS_3              1               27
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        2      3      1
  TNRC6C WILD-TYPE     87     32     21
D165V8, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3               32
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        3      3      0
  TNRC6C WILD-TYPE     59     48     31
D165V9, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              3               59
  CLUS_2              3               48
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        1      4      1
  TNRC6C WILD-TYPE     74     41     23
D165V10, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              1               74
  CLUS_2              4               41
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(166) Variable = NAA40 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA40 MUTATED        3      0      0
  NAA40 WILD-TYPE     63     65     14
D166V1, multiclass
        clus
vv       NAA40 MUTATED NAA40 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             0              65
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA40 MUTATED        1      1      1      0
  NAA40 WILD-TYPE     37     28     44     34
D166V2, multiclass
        clus
vv       NAA40 MUTATED NAA40 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             1              28
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA40 MUTATED        0      1      1      0      0
  NAA40 WILD-TYPE     34     15     10     11     13
D166V3, multiclass
[1] "Remove cluster labels:" "NAA40 MUTATED"         
clus
  NAA40 MUTATED NAA40 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAA40 MUTATED        0      1      0      0      0      0      1
  NAA40 WILD-TYPE     12     16     21      9      6     14      5
D166V4, multiclass
[1] "Remove cluster labels:" "NAA40 MUTATED"         
clus
  NAA40 MUTATED NAA40 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-H6-A45N 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"NAA40 WILD-TYPE" "NAA40 WILD-TYPE" "NAA40 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA40 MUTATED        1      1      1
  NAA40 WILD-TYPE     70     42     31
D166V5, multiclass
        clus
vv       NAA40 MUTATED NAA40 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              42
  CLUS_3             1              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA40 MUTATED        2      1      0
  NAA40 WILD-TYPE     65     62     16
D166V6, multiclass
        clus
vv       NAA40 MUTATED NAA40 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              62
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA40 MUTATED        1      2      0      0
  NAA40 WILD-TYPE     61     34     28     20
D166V7, multiclass
        clus
vv       NAA40 MUTATED NAA40 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              34
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA40 MUTATED        2      1      0
  NAA40 WILD-TYPE     87     34     22
D166V8, multiclass
        clus
vv       NAA40 MUTATED NAA40 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA40 MUTATED        2      0      1
  NAA40 WILD-TYPE     60     51     30
D166V9, multiclass
        clus
vv       NAA40 MUTATED NAA40 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              51
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA40 MUTATED        1      2      0
  NAA40 WILD-TYPE     74     43     24
D166V10, multiclass
        clus
vv       NAA40 MUTATED NAA40 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2              43
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(167) Variable = AKAP13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP13 MUTATED        5      1      0
  AKAP13 WILD-TYPE     61     64     14
D167V1, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              5               61
  CLUS_2              1               64
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP13 MUTATED        2      2      1      1
  AKAP13 WILD-TYPE     36     27     44     33
D167V2, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              2               27
  CLUS_3              1               44
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP13 MUTATED        0      1      1      1      0
  AKAP13 WILD-TYPE     34     15     10     10     13
D167V3, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              1               15
  CLUS_3              1               10
  CLUS_4              1               10
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKAP13 MUTATED        0      1      0      0      0      1      1
  AKAP13 WILD-TYPE     12     16     21      9      6     13      5
D167V4, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              1               16
  CLUS_3              0               21
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP13 MUTATED        3      2      1
  AKAP13 WILD-TYPE     68     41     31
D167V5, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              2               41
  CLUS_3              1               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP13 MUTATED        4      2      0
  AKAP13 WILD-TYPE     63     61     16
D167V6, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              4               63
  CLUS_2              2               61
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP13 MUTATED        1      2      3      0
  AKAP13 WILD-TYPE     61     34     25     20
D167V7, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              2               34
  CLUS_3              3               25
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP13 MUTATED        4      2      0
  AKAP13 WILD-TYPE     85     33     22
D167V8, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              2               33
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP13 MUTATED        2      3      1
  AKAP13 WILD-TYPE     60     48     30
D167V9, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              3               48
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP13 MUTATED        1      4      1
  AKAP13 WILD-TYPE     74     41     23
D167V10, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              4               41
  CLUS_3              1               23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(168) Variable = ASH1L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        5      1      0
  ASH1L WILD-TYPE     61     64     14
D168V1, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             5              61
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASH1L MUTATED        2      0      1      3
  ASH1L WILD-TYPE     36     29     44     31
D168V2, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             3              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASH1L MUTATED        2      2      1      0      0
  ASH1L WILD-TYPE     32     14     10     11     13
D168V3, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             2              32
  CLUS_2             2              14
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASH1L MUTATED        1      2      1      0      0      0      1
  ASH1L WILD-TYPE     11     15     20      9      6     14      5
D168V4, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             1              11
  CLUS_2             2              15
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        3      1      2
  ASH1L WILD-TYPE     68     42     30
D168V5, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              42
  CLUS_3             2              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        1      5      0
  ASH1L WILD-TYPE     66     58     16
D168V6, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             1              66
  CLUS_2             5              58
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASH1L MUTATED        0      1      3      2
  ASH1L WILD-TYPE     62     35     25     18
D168V7, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             0              62
  CLUS_2             1              35
  CLUS_3             3              25
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        5      0      1
  ASH1L WILD-TYPE     84     35     21
D168V8, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             5              84
  CLUS_2             0              35
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        2      2      2
  ASH1L WILD-TYPE     60     49     29
D168V9, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              49
  CLUS_3             2              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        4      1      1
  ASH1L WILD-TYPE     71     44     23
D168V10, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             4              71
  CLUS_2             1              44
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(169) Variable = ATP2C2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        2      2      0
  ATP2C2 WILD-TYPE     64     63     14
D169V1, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C2 MUTATED        3      0      0      1
  ATP2C2 WILD-TYPE     35     29     45     33
D169V2, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              3               35
  CLUS_2              0               29
  CLUS_3              0               45
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2C2 MUTATED        1      0      2      0      0
  ATP2C2 WILD-TYPE     33     16      9     11     13
D169V3, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              0               16
  CLUS_3              2                9
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP2C2 MUTATED        1      0      0      1      0      0      1
  ATP2C2 WILD-TYPE     11     17     21      8      6     14      5
D169V4, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              1               11
  CLUS_2              0               17
  CLUS_3              0               21
  CLUS_4              1                8
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        0      2      2
  ATP2C2 WILD-TYPE     71     41     30
D169V5, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              2               41
  CLUS_3              2               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        3      1      0
  ATP2C2 WILD-TYPE     64     62     16
D169V6, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              1               62
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C2 MUTATED        0      2      1      1
  ATP2C2 WILD-TYPE     62     34     27     19
D169V7, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              0               62
  CLUS_2              2               34
  CLUS_3              1               27
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        1      2      1
  ATP2C2 WILD-TYPE     88     33     21
D169V8, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2               33
  CLUS_3              1               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        1      2      1
  ATP2C2 WILD-TYPE     61     49     30
D169V9, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              2               49
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        0      2      2
  ATP2C2 WILD-TYPE     75     43     22
D169V10, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              0               75
  CLUS_2              2               43
  CLUS_3              2               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(170) Variable = ANKRD30A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED        3      4      1
  ANKRD30A WILD-TYPE     63     61     13
D170V1, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                3                 63
  CLUS_2                4                 61
  CLUS_3                1                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD30A MUTATED        2      1      3      2
  ANKRD30A WILD-TYPE     36     28     42     32
D170V2, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                2                 36
  CLUS_2                1                 28
  CLUS_3                3                 42
  CLUS_4                2                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD30A MUTATED        1      1      1      1      1
  ANKRD30A WILD-TYPE     33     15     10     10     12
D170V3, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                1                 15
  CLUS_3                1                 10
  CLUS_4                1                 10
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD30A MUTATED        0      1      1      0      1      1      1
  ANKRD30A WILD-TYPE     12     16     20      9      5     13      5
D170V4, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                1                 16
  CLUS_3                1                 20
  CLUS_4                0                  9
  CLUS_5                1                  5
  CLUS_6                1                 13
  CLUS_7                1                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED        2      4      2
  ANKRD30A WILD-TYPE     69     39     30
D170V5, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                4                 39
  CLUS_3                2                 30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED        3      3      2
  ANKRD30A WILD-TYPE     64     60     14
D170V6, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                3                 64
  CLUS_2                3                 60
  CLUS_3                2                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD30A MUTATED        3      2      2      1
  ANKRD30A WILD-TYPE     59     34     26     19
D170V7, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                3                 59
  CLUS_2                2                 34
  CLUS_3                2                 26
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED        5      1      2
  ANKRD30A WILD-TYPE     84     34     20
D170V8, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                5                 84
  CLUS_2                1                 34
  CLUS_3                2                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED        2      3      3
  ANKRD30A WILD-TYPE     60     48     28
D170V9, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                2                 60
  CLUS_2                3                 48
  CLUS_3                3                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED        4      2      2
  ANKRD30A WILD-TYPE     71     43     22
D170V10, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                4                 71
  CLUS_2                2                 43
  CLUS_3                2                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(171) Variable = MKI67 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED        3      2      1
  MKI67 WILD-TYPE     63     63     13
D171V1, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             2              63
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67 MUTATED        2      2      1      1
  MKI67 WILD-TYPE     36     27     44     33
D171V2, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             2              27
  CLUS_3             1              44
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKI67 MUTATED        1      0      1      2      0
  MKI67 WILD-TYPE     33     16     10      9     13
D171V3, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             1              10
  CLUS_4             2               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MKI67 MUTATED        1      0      1      0      0      1      1
  MKI67 WILD-TYPE     11     17     20      9      6     13      5
D171V4, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             1              11
  CLUS_2             0              17
  CLUS_3             1              20
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED        2      2      2
  MKI67 WILD-TYPE     69     41     30
D171V5, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              41
  CLUS_3             2              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED        3      1      2
  MKI67 WILD-TYPE     64     62     14
D171V6, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             1              62
  CLUS_3             2              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67 MUTATED        2      2      0      2
  MKI67 WILD-TYPE     60     34     28     18
D171V7, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              34
  CLUS_3             0              28
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED        3      1      2
  MKI67 WILD-TYPE     86     34     20
D171V8, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             1              34
  CLUS_3             2              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED        3      2      1
  MKI67 WILD-TYPE     59     49     30
D171V9, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             2              49
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED        2      2      2
  MKI67 WILD-TYPE     73     43     22
D171V10, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             2              43
  CLUS_3             2              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(172) Variable = FCGBP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCGBP MUTATED        6      5      1
  FCGBP WILD-TYPE     60     60     13
D172V1, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             6              60
  CLUS_2             5              60
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCGBP MUTATED        4      2      3      3
  FCGBP WILD-TYPE     34     27     42     31
D172V2, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             4              34
  CLUS_2             2              27
  CLUS_3             3              42
  CLUS_4             3              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FCGBP MUTATED        4      0      2      1      0
  FCGBP WILD-TYPE     30     16      9     10     13
D172V3, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             4              30
  CLUS_2             0              16
  CLUS_3             2               9
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FCGBP MUTATED        1      0      3      1      0      1      1
  FCGBP WILD-TYPE     11     17     18      8      6     13      5
D172V4, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             1              11
  CLUS_2             0              17
  CLUS_3             3              18
  CLUS_4             1               8
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCGBP MUTATED        2      5      5
  FCGBP WILD-TYPE     69     38     27
D172V5, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             2              69
  CLUS_2             5              38
  CLUS_3             5              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCGBP MUTATED        6      3      3
  FCGBP WILD-TYPE     61     60     13
D172V6, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             6              61
  CLUS_2             3              60
  CLUS_3             3              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCGBP MUTATED        2      5      0      5
  FCGBP WILD-TYPE     60     31     28     15
D172V7, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             2              60
  CLUS_2             5              31
  CLUS_3             0              28
  CLUS_4             5              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCGBP MUTATED        7      2      3
  FCGBP WILD-TYPE     82     33     19
D172V8, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             7              82
  CLUS_2             2              33
  CLUS_3             3              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCGBP MUTATED        4      4      4
  FCGBP WILD-TYPE     58     47     27
D172V9, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             4              58
  CLUS_2             4              47
  CLUS_3             4              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCGBP MUTATED        5      4      3
  FCGBP WILD-TYPE     70     41     21
D172V10, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             5              70
  CLUS_2             4              41
  CLUS_3             3              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(173) Variable = SRFBP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRFBP1 MUTATED        1      2      0
  SRFBP1 WILD-TYPE     65     63     14
D173V1, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              1               65
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRFBP1 MUTATED        2      0      0      1
  SRFBP1 WILD-TYPE     36     29     45     33
D173V2, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              0               29
  CLUS_3              0               45
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRFBP1 MUTATED        1      0      1      0      1
  SRFBP1 WILD-TYPE     33     16     10     11     12
D173V3, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              0               16
  CLUS_3              1               10
  CLUS_4              0               11
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SRFBP1 MUTATED        1      0      0      0      0      1      1
  SRFBP1 WILD-TYPE     11     17     21      9      6     13      5
D173V4, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              1               11
  CLUS_2              0               17
  CLUS_3              0               21
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              1               13
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRFBP1 MUTATED        2      1      0
  SRFBP1 WILD-TYPE     69     42     32
D173V5, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               42
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRFBP1 MUTATED        1      2      0
  SRFBP1 WILD-TYPE     66     61     16
D173V6, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              2               61
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRFBP1 MUTATED        2      1      0      0
  SRFBP1 WILD-TYPE     60     35     28     20
D173V7, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               35
  CLUS_3              0               28
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRFBP1 MUTATED        3      0      0
  SRFBP1 WILD-TYPE     86     35     22
D173V8, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRFBP1 MUTATED        3      0      0
  SRFBP1 WILD-TYPE     59     51     31
D173V9, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               51
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRFBP1 MUTATED        1      2      0
  SRFBP1 WILD-TYPE     74     43     24
D173V10, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              2               43
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(174) Variable = NFKBIZ MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIZ MUTATED        2      2      0
  NFKBIZ WILD-TYPE     64     63     14
D174V1, multiclass
        clus
vv       NFKBIZ MUTATED NFKBIZ WILD-TYPE
  CLUS_1              2               64
  CLUS_2              2               63
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIZ MUTATED        2      0      1      1
  NFKBIZ WILD-TYPE     36     29     44     33
D174V2, multiclass
        clus
vv       NFKBIZ MUTATED NFKBIZ WILD-TYPE
  CLUS_1              2               36
  CLUS_2              0               29
  CLUS_3              1               44
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFKBIZ MUTATED        1      0      1      1      0
  NFKBIZ WILD-TYPE     33     16     10     10     13
D174V3, multiclass
        clus
vv       NFKBIZ MUTATED NFKBIZ WILD-TYPE
  CLUS_1              1               33
  CLUS_2              0               16
  CLUS_3              1               10
  CLUS_4              1               10
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFKBIZ MUTATED        1      0      1      0      0      0      1
  NFKBIZ WILD-TYPE     11     17     20      9      6     14      5
D174V4, multiclass
        clus
vv       NFKBIZ MUTATED NFKBIZ WILD-TYPE
  CLUS_1              1               11
  CLUS_2              0               17
  CLUS_3              1               20
  CLUS_4              0                9
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIZ MUTATED        2      2      0
  NFKBIZ WILD-TYPE     69     41     32
D174V5, multiclass
        clus
vv       NFKBIZ MUTATED NFKBIZ WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               41
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIZ MUTATED        1      3      0
  NFKBIZ WILD-TYPE     66     60     16
D174V6, multiclass
        clus
vv       NFKBIZ MUTATED NFKBIZ WILD-TYPE
  CLUS_1              1               66
  CLUS_2              3               60
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIZ MUTATED        2      1      1      0
  NFKBIZ WILD-TYPE     60     35     27     20
D174V7, multiclass
        clus
vv       NFKBIZ MUTATED NFKBIZ WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               35
  CLUS_3              1               27
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIZ MUTATED        4      0      0
  NFKBIZ WILD-TYPE     85     35     22
D174V8, multiclass
        clus
vv       NFKBIZ MUTATED NFKBIZ WILD-TYPE
  CLUS_1              4               85
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIZ MUTATED        3      1      0
  NFKBIZ WILD-TYPE     59     50     31
D174V9, multiclass
        clus
vv       NFKBIZ MUTATED NFKBIZ WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               50
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIZ MUTATED        3      1      0
  NFKBIZ WILD-TYPE     72     44     24
D174V10, multiclass
        clus
vv       NFKBIZ MUTATED NFKBIZ WILD-TYPE
  CLUS_1              3               72
  CLUS_2              1               44
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(175) Variable = NBPF10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        0      4      1
  NBPF10 WILD-TYPE     66     61     13
D175V1, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              0               66
  CLUS_2              4               61
  CLUS_3              1               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF10 MUTATED        3      0      2      0
  NBPF10 WILD-TYPE     35     29     43     34
D175V2, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              3               35
  CLUS_2              0               29
  CLUS_3              2               43
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF10 MUTATED        0      0      0      2      1
  NBPF10 WILD-TYPE     34     16     11      9     12
D175V3, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              0               16
  CLUS_3              0               11
  CLUS_4              2                9
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBPF10 MUTATED        0      1      0      0      1      1      0
  NBPF10 WILD-TYPE     12     16     21      9      5     13      6
D175V4, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              1               16
  CLUS_3              0               21
  CLUS_4              0                9
  CLUS_5              1                5
  CLUS_6              1               13
  CLUS_7              0                6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        5      0      0
  NBPF10 WILD-TYPE     66     43     32
D175V5, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              0               43
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        1      4      0
  NBPF10 WILD-TYPE     66     59     16
D175V6, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              4               59
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF10 MUTATED        4      0      1      0
  NBPF10 WILD-TYPE     58     36     27     20
D175V7, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               36
  CLUS_3              1               27
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        5      0      0
  NBPF10 WILD-TYPE     84     35     22
D175V8, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        5      0      0
  NBPF10 WILD-TYPE     57     51     31
D175V9, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              0               51
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        4      1      0
  NBPF10 WILD-TYPE     71     44     24
D175V10, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              4               71
  CLUS_2              1               44
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(176) Variable = ZNF358 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF358 MUTATED        3      1      0
  ZNF358 WILD-TYPE     63     64     14
D176V1, multiclass
        clus
vv       ZNF358 MUTATED ZNF358 WILD-TYPE
  CLUS_1              3               63
  CLUS_2              1               64
  CLUS_3              0               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF358 MUTATED        3      0      0      1
  ZNF358 WILD-TYPE     35     29     45     33
D176V2, multiclass
        clus
vv       ZNF358 MUTATED ZNF358 WILD-TYPE
  CLUS_1              3               35
  CLUS_2              0               29
  CLUS_3              0               45
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF358 MUTATED        0      1      1      0      0
  ZNF358 WILD-TYPE     34     15     10     11     13
D176V3, multiclass
[1] "Remove cluster labels:" "ZNF358 MUTATED"        
clus
  ZNF358 MUTATED ZNF358 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQL       TCGA-3A-A9I5 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879       TCGA-F2-A44G 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A545 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N       TCGA-HV-A5A6 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7652 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF358 MUTATED        0      1      0      0      0      0      1
  ZNF358 WILD-TYPE     12     16     21      9      6     14      5
D176V4, multiclass
[1] "Remove cluster labels:" "ZNF358 MUTATED"        
clus
  ZNF358 MUTATED ZNF358 WILD-TYPE 
               2               83 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQL       TCGA-3A-A9I5 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-3A-A9IB       TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-3A-A9IZ       TCGA-3E-AAAZ       TCGA-F2-6879       TCGA-F2-A44G 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-F2-A8YN       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A545 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-H6-A45N       TCGA-HV-A5A6 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7925       TCGA-HZ-8001 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-HZ-8002       TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-HZ-8519       TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7652 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-M8-A5N4 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RM       TCGA-S4-A8RO 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-S4-A8RP       TCGA-US-A774       TCGA-US-A776       TCGA-US-A779 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-US-A77E       TCGA-US-A77G       TCGA-XD-AAUL       TCGA-XN-A8T5 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" "ZNF358 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF358 MUTATED        3      1      0
  ZNF358 WILD-TYPE     68     42     32
D176V5, multiclass
        clus
vv       ZNF358 MUTATED ZNF358 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               42
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF358 MUTATED        2      2      0
  ZNF358 WILD-TYPE     65     61     16
D176V6, multiclass
        clus
vv       ZNF358 MUTATED ZNF358 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              2               61
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF358 MUTATED        1      1      2      0
  ZNF358 WILD-TYPE     61     35     26     20
D176V7, multiclass
        clus
vv       ZNF358 MUTATED ZNF358 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              1               35
  CLUS_3              2               26
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF358 MUTATED        4      0      0
  ZNF358 WILD-TYPE     85     35     22
D176V8, multiclass
        clus
vv       ZNF358 MUTATED ZNF358 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF358 MUTATED        2      1      1
  ZNF358 WILD-TYPE     60     50     30
D176V9, multiclass
        clus
vv       ZNF358 MUTATED ZNF358 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               50
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF358 MUTATED        2      2      0
  ZNF358 WILD-TYPE     73     43     24
D176V10, multiclass
        clus
vv       ZNF358 MUTATED ZNF358 WILD-TYPE
  CLUS_1              2               73
  CLUS_2              2               43
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(177) Variable = HIST1H2BK MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BK MUTATED        1      2      0
  HIST1H2BK WILD-TYPE     65     63     14
D177V1, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 1                  65
  CLUS_2                 2                  63
  CLUS_3                 0                  14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BK MUTATED        2      0      0      1
  HIST1H2BK WILD-TYPE     36     29     45     33
D177V2, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 2                  36
  CLUS_2                 0                  29
  CLUS_3                 0                  45
  CLUS_4                 1                  33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BK MUTATED        1      0      1      0      0
  HIST1H2BK WILD-TYPE     33     16     10     11     13
D177V3, multiclass
[1] "Remove cluster labels:" "HIST1H2BK MUTATED"     
clus
  HIST1H2BK MUTATED HIST1H2BK WILD-TYPE 
                  2                  83 
         TCGA-2L-AAQA          TCGA-2L-AAQI          TCGA-2L-AAQJ 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-2L-AAQL          TCGA-3A-A9I5          TCGA-3A-A9IB 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-3A-A9IH          TCGA-3A-A9IU          TCGA-3A-A9IX 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-3A-A9IZ          TCGA-3E-AAAZ          TCGA-F2-6879 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-F2-A44G          TCGA-F2-A8YN          TCGA-FB-A4P5 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-FB-A4P6          TCGA-FB-A545          TCGA-FB-A5VM 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-FB-A78T          TCGA-H6-A45N          TCGA-HV-A5A6 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-HZ-7919          TCGA-HZ-7922          TCGA-HZ-7925 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-HZ-8001          TCGA-HZ-8002          TCGA-HZ-8003 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-HZ-8005          TCGA-HZ-8315          TCGA-HZ-8519 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-HZ-A4BH          TCGA-HZ-A4BK          TCGA-IB-7644 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-7646          TCGA-IB-7647          TCGA-IB-7649 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-7651          TCGA-IB-7652          TCGA-IB-7885 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-7886          TCGA-IB-7887          TCGA-IB-7888 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-7889          TCGA-IB-7890          TCGA-IB-7891 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-7893          TCGA-IB-8126          TCGA-IB-8127 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-A5SO          TCGA-IB-A5SP          TCGA-IB-A5SQ 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-A5SS          TCGA-IB-A5ST          TCGA-IB-A6UF 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-A7LX          TCGA-IB-A7M4          TCGA-IB-AAUM 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-AAUN          TCGA-IB-AAUO          TCGA-IB-AAUP 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-AAUS          TCGA-IB-AAUU          TCGA-LB-A7SX 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-LB-A8F3          TCGA-LB-A9Q5          TCGA-M8-A5N4 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-OE-A75W          TCGA-PZ-A5RE          TCGA-Q3-A5QY 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-Q3-AA2A          TCGA-RB-A7B8          TCGA-RB-AA9M 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-S4-A8RM          TCGA-S4-A8RP          TCGA-US-A774 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-US-A776          TCGA-US-A779          TCGA-US-A77E 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-XD-AAUL          TCGA-XN-A8T5          TCGA-YB-A89D 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-YH-A8SY          TCGA-YY-A8LH 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H2BK MUTATED        1      0      0      1      0      0      0
  HIST1H2BK WILD-TYPE     11     17     21      8      6     14      6
D177V4, multiclass
[1] "Remove cluster labels:" "HIST1H2BK MUTATED"     
clus
  HIST1H2BK MUTATED HIST1H2BK WILD-TYPE 
                  2                  83 
         TCGA-2L-AAQA          TCGA-2L-AAQI          TCGA-2L-AAQJ 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-2L-AAQL          TCGA-3A-A9I5          TCGA-3A-A9IB 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-3A-A9IH          TCGA-3A-A9IU          TCGA-3A-A9IX 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-3A-A9IZ          TCGA-3E-AAAZ          TCGA-F2-6879 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-F2-A44G          TCGA-F2-A8YN          TCGA-FB-A4P5 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-FB-A4P6          TCGA-FB-A545          TCGA-FB-A5VM 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-FB-A78T          TCGA-H6-A45N          TCGA-HV-A5A6 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-HZ-7919          TCGA-HZ-7922          TCGA-HZ-7925 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-HZ-8001          TCGA-HZ-8002          TCGA-HZ-8003 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-HZ-8005          TCGA-HZ-8315          TCGA-HZ-8519 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-HZ-A4BH          TCGA-HZ-A4BK          TCGA-IB-7644 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-7646          TCGA-IB-7647          TCGA-IB-7649 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-7651          TCGA-IB-7652          TCGA-IB-7885 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-7886          TCGA-IB-7887          TCGA-IB-7888 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-7889          TCGA-IB-7890          TCGA-IB-7891 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-7893          TCGA-IB-8126          TCGA-IB-8127 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-A5SO          TCGA-IB-A5SP          TCGA-IB-A5SQ 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-A5SS          TCGA-IB-A5ST          TCGA-IB-A6UF 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-A7LX          TCGA-IB-A7M4          TCGA-IB-AAUM 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-AAUN          TCGA-IB-AAUO          TCGA-IB-AAUP 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-IB-AAUS          TCGA-IB-AAUU          TCGA-LB-A7SX 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-LB-A8F3          TCGA-LB-A9Q5          TCGA-M8-A5N4 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-OE-A75W          TCGA-PZ-A5RE          TCGA-Q3-A5QY 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-Q3-AA2A          TCGA-RB-A7B8          TCGA-RB-AA9M 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-S4-A8RM          TCGA-S4-A8RP          TCGA-US-A774 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-US-A776          TCGA-US-A779          TCGA-US-A77E 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-XD-AAUL          TCGA-XN-A8T5          TCGA-YB-A89D 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
         TCGA-YH-A8SY          TCGA-YY-A8LH 
"HIST1H2BK WILD-TYPE" "HIST1H2BK WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BK MUTATED        1      1      1
  HIST1H2BK WILD-TYPE     70     42     31
D177V5, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 1                  70
  CLUS_2                 1                  42
  CLUS_3                 1                  31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BK MUTATED        1      1      1
  HIST1H2BK WILD-TYPE     66     62     15
D177V6, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 1                  66
  CLUS_2                 1                  62
  CLUS_3                 1                  15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BK MUTATED        1      1      0      1
  HIST1H2BK WILD-TYPE     61     35     28     19
D177V7, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 1                  61
  CLUS_2                 1                  35
  CLUS_3                 0                  28
  CLUS_4                 1                  19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BK MUTATED        1      1      1
  HIST1H2BK WILD-TYPE     88     34     21
D177V8, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 1                  88
  CLUS_2                 1                  34
  CLUS_3                 1                  21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BK MUTATED        0      1      2
  HIST1H2BK WILD-TYPE     62     50     29
D177V9, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 0                  62
  CLUS_2                 1                  50
  CLUS_3                 2                  29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BK MUTATED        1      1      1
  HIST1H2BK WILD-TYPE     74     44     23
D177V10, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 1                  74
  CLUS_2                 1                  44
  CLUS_3                 1                  23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(178) Variable = DDB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDB1 MUTATED        4      1      0
  DDB1 WILD-TYPE     62     64     14
D178V1, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            4             62
  CLUS_2            1             64
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDB1 MUTATED        2      0      0      3
  DDB1 WILD-TYPE     36     29     45     31
D178V2, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            2             36
  CLUS_2            0             29
  CLUS_3            0             45
  CLUS_4            3             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDB1 MUTATED        1      0      1      0      1
  DDB1 WILD-TYPE     33     16     10     11     12
D178V3, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            0             16
  CLUS_3            1             10
  CLUS_4            0             11
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDB1 MUTATED        1      0      0      0      1      0      1
  DDB1 WILD-TYPE     11     17     21      9      5     14      5
D178V4, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            1             11
  CLUS_2            0             17
  CLUS_3            0             21
  CLUS_4            0              9
  CLUS_5            1              5
  CLUS_6            0             14
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDB1 MUTATED        3      1      1
  DDB1 WILD-TYPE     68     42     31
D178V5, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            1             42
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDB1 MUTATED        1      3      1
  DDB1 WILD-TYPE     66     60     15
D178V6, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            3             60
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDB1 MUTATED        1      1      3      0
  DDB1 WILD-TYPE     61     35     25     20
D178V7, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             35
  CLUS_3            3             25
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDB1 MUTATED        4      0      1
  DDB1 WILD-TYPE     85     35     21
D178V8, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            0             35
  CLUS_3            1             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDB1 MUTATED        3      1      1
  DDB1 WILD-TYPE     59     50     30
D178V9, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             50
  CLUS_3            1             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDB1 MUTATED        3      1      1
  DDB1 WILD-TYPE     72     44     23
D178V10, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            3             72
  CLUS_2            1             44
  CLUS_3            1             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(179) Variable = BVES MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BVES MUTATED        2      1      1
  BVES WILD-TYPE     64     64     13
D179V1, multiclass
        clus
vv       BVES MUTATED BVES WILD-TYPE
  CLUS_1            2             64
  CLUS_2            1             64
  CLUS_3            1             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BVES MUTATED        2      1      1      0
  BVES WILD-TYPE     36     28     44     34
D179V2, multiclass
        clus
vv       BVES MUTATED BVES WILD-TYPE
  CLUS_1            2             36
  CLUS_2            1             28
  CLUS_3            1             44
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BVES MUTATED        0      0      1      0      2
  BVES WILD-TYPE     34     16     10     11     11
D179V3, multiclass
        clus
vv       BVES MUTATED BVES WILD-TYPE
  CLUS_1            0             34
  CLUS_2            0             16
  CLUS_3            1             10
  CLUS_4            0             11
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BVES MUTATED        0      1      0      0      1      0      1
  BVES WILD-TYPE     12     16     21      9      5     14      5
D179V4, multiclass
        clus
vv       BVES MUTATED BVES WILD-TYPE
  CLUS_1            0             12
  CLUS_2            1             16
  CLUS_3            0             21
  CLUS_4            0              9
  CLUS_5            1              5
  CLUS_6            0             14
  CLUS_7            1              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BVES MUTATED        2      2      0
  BVES WILD-TYPE     69     41     32
D179V5, multiclass
        clus
vv       BVES MUTATED BVES WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             41
  CLUS_3            0             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BVES MUTATED        3      1      0
  BVES WILD-TYPE     64     62     16
D179V6, multiclass
        clus
vv       BVES MUTATED BVES WILD-TYPE
  CLUS_1            3             64
  CLUS_2            1             62
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BVES MUTATED        1      2      1      0
  BVES WILD-TYPE     61     34     27     20
D179V7, multiclass
        clus
vv       BVES MUTATED BVES WILD-TYPE
  CLUS_1            1             61
  CLUS_2            2             34
  CLUS_3            1             27
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BVES MUTATED        3      1      0
  BVES WILD-TYPE     86     34     22
D179V8, multiclass
        clus
vv       BVES MUTATED BVES WILD-TYPE
  CLUS_1            3             86
  CLUS_2            1             34
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BVES MUTATED        3      1      0
  BVES WILD-TYPE     59     50     31
D179V9, multiclass
        clus
vv       BVES MUTATED BVES WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             50
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BVES MUTATED        2      2      0
  BVES WILD-TYPE     73     43     24
D179V10, multiclass
        clus
vv       BVES MUTATED BVES WILD-TYPE
  CLUS_1            2             73
  CLUS_2            2             43
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(180) Variable = SLC26A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A3 MUTATED        2      1      0
  SLC26A3 WILD-TYPE     64     64     14
D180V1, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               2                64
  CLUS_2               1                64
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A3 MUTATED        1      1      1      0
  SLC26A3 WILD-TYPE     37     28     44     34
D180V2, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               1                37
  CLUS_2               1                28
  CLUS_3               1                44
  CLUS_4               0                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A3 MUTATED        0      1      1      0      1
  SLC26A3 WILD-TYPE     34     15     10     11     12
D180V3, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               0                34
  CLUS_2               1                15
  CLUS_3               1                10
  CLUS_4               0                11
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC26A3 MUTATED        0      1      0      0      0      1      1
  SLC26A3 WILD-TYPE     12     16     21      9      6     13      5
D180V4, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               0                12
  CLUS_2               1                16
  CLUS_3               0                21
  CLUS_4               0                 9
  CLUS_5               0                 6
  CLUS_6               1                13
  CLUS_7               1                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A3 MUTATED        1      2      0
  SLC26A3 WILD-TYPE     70     41     32
D180V5, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               2                41
  CLUS_3               0                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A3 MUTATED        3      0      0
  SLC26A3 WILD-TYPE     64     63     16
D180V6, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               3                64
  CLUS_2               0                63
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A3 MUTATED        1      2      0      0
  SLC26A3 WILD-TYPE     61     34     28     20
D180V7, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               1                61
  CLUS_2               2                34
  CLUS_3               0                28
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A3 MUTATED        2      1      0
  SLC26A3 WILD-TYPE     87     34     22
D180V8, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               1                34
  CLUS_3               0                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A3 MUTATED        2      1      0
  SLC26A3 WILD-TYPE     60     50     31
D180V9, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               1                50
  CLUS_3               0                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A3 MUTATED        1      2      0
  SLC26A3 WILD-TYPE     74     43     24
D180V10, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               1                74
  CLUS_2               2                43
  CLUS_3               0                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(181) Variable = CMYA5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CMYA5 MUTATED        6      2      0
  CMYA5 WILD-TYPE     60     63     14
D181V1, multiclass
        clus
vv       CMYA5 MUTATED CMYA5 WILD-TYPE
  CLUS_1             6              60
  CLUS_2             2              63
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CMYA5 MUTATED        2      2      1      3
  CMYA5 WILD-TYPE     36     27     44     31
D181V2, multiclass
        clus
vv       CMYA5 MUTATED CMYA5 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             2              27
  CLUS_3             1              44
  CLUS_4             3              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CMYA5 MUTATED        1      1      1      1      0
  CMYA5 WILD-TYPE     33     15     10     10     13
D181V3, multiclass
        clus
vv       CMYA5 MUTATED CMYA5 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CMYA5 MUTATED        0      1      0      0      0      2      1
  CMYA5 WILD-TYPE     12     16     21      9      6     12      5
D181V4, multiclass
        clus
vv       CMYA5 MUTATED CMYA5 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             0               9
  CLUS_5             0               6
  CLUS_6             2              12
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CMYA5 MUTATED        2      4      2
  CMYA5 WILD-TYPE     69     39     30
D181V5, multiclass
        clus
vv       CMYA5 MUTATED CMYA5 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             4              39
  CLUS_3             2              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CMYA5 MUTATED        5      3      0
  CMYA5 WILD-TYPE     62     60     16
D181V6, multiclass
        clus
vv       CMYA5 MUTATED CMYA5 WILD-TYPE
  CLUS_1             5              62
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CMYA5 MUTATED        2      3      2      1
  CMYA5 WILD-TYPE     60     33     26     19
D181V7, multiclass
        clus
vv       CMYA5 MUTATED CMYA5 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             3              33
  CLUS_3             2              26
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CMYA5 MUTATED        5      3      0
  CMYA5 WILD-TYPE     84     32     22
D181V8, multiclass
        clus
vv       CMYA5 MUTATED CMYA5 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             3              32
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CMYA5 MUTATED        1      5      2
  CMYA5 WILD-TYPE     61     46     29
D181V9, multiclass
        clus
vv       CMYA5 MUTATED CMYA5 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             5              46
  CLUS_3             2              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CMYA5 MUTATED        4      3      1
  CMYA5 WILD-TYPE     71     42     23
D181V10, multiclass
        clus
vv       CMYA5 MUTATED CMYA5 WILD-TYPE
  CLUS_1             4              71
  CLUS_2             3              42
  CLUS_3             1              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(182) Variable = CHSY3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHSY3 MUTATED        4      1      0
  CHSY3 WILD-TYPE     62     64     14
D182V1, multiclass
        clus
vv       CHSY3 MUTATED CHSY3 WILD-TYPE
  CLUS_1             4              62
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHSY3 MUTATED        2      1      0      2
  CHSY3 WILD-TYPE     36     28     45     32
D182V2, multiclass
        clus
vv       CHSY3 MUTATED CHSY3 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             1              28
  CLUS_3             0              45
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHSY3 MUTATED        0      0      2      1      0
  CHSY3 WILD-TYPE     34     16      9     10     13
D182V3, multiclass
        clus
vv       CHSY3 MUTATED CHSY3 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             0              16
  CLUS_3             2               9
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHSY3 MUTATED        0      0      0      1      0      1      1
  CHSY3 WILD-TYPE     12     17     21      8      6     13      5
D182V4, multiclass
        clus
vv       CHSY3 MUTATED CHSY3 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             0              21
  CLUS_4             1               8
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHSY3 MUTATED        0      3      2
  CHSY3 WILD-TYPE     71     40     30
D182V5, multiclass
        clus
vv       CHSY3 MUTATED CHSY3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              40
  CLUS_3             2              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHSY3 MUTATED        4      0      1
  CHSY3 WILD-TYPE     63     63     15
D182V6, multiclass
        clus
vv       CHSY3 MUTATED CHSY3 WILD-TYPE
  CLUS_1             4              63
  CLUS_2             0              63
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHSY3 MUTATED        0      3      1      1
  CHSY3 WILD-TYPE     62     33     27     19
D182V7, multiclass
        clus
vv       CHSY3 MUTATED CHSY3 WILD-TYPE
  CLUS_1             0              62
  CLUS_2             3              33
  CLUS_3             1              27
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHSY3 MUTATED        1      3      1
  CHSY3 WILD-TYPE     88     32     21
D182V8, multiclass
        clus
vv       CHSY3 MUTATED CHSY3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3              32
  CLUS_3             1              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHSY3 MUTATED        1      3      1
  CHSY3 WILD-TYPE     61     48     30
D182V9, multiclass
        clus
vv       CHSY3 MUTATED CHSY3 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             3              48
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHSY3 MUTATED        0      3      2
  CHSY3 WILD-TYPE     75     42     22
D182V10, multiclass
        clus
vv       CHSY3 MUTATED CHSY3 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             3              42
  CLUS_3             2              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(183) Variable = AGAP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP6 MUTATED        2      4      1
  AGAP6 WILD-TYPE     64     61     13
D183V1, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             4              61
  CLUS_3             1              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        3      2      2      0
  AGAP6 WILD-TYPE     35     27     43     34
D183V2, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             2              27
  CLUS_3             2              43
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP6 MUTATED        1      0      3      1      0
  AGAP6 WILD-TYPE     33     16      8     10     13
D183V3, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              16
  CLUS_3             3               8
  CLUS_4             1              10
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGAP6 MUTATED        0      0      1      2      0      1      1
  AGAP6 WILD-TYPE     12     17     20      7      6     13      5
D183V4, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             0              17
  CLUS_3             1              20
  CLUS_4             2               7
  CLUS_5             0               6
  CLUS_6             1              13
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP6 MUTATED        2      5      0
  AGAP6 WILD-TYPE     69     38     32
D183V5, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             5              38
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP6 MUTATED        6      1      0
  AGAP6 WILD-TYPE     61     62     16
D183V6, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             6              61
  CLUS_2             1              62
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        3      4      0      0
  AGAP6 WILD-TYPE     59     32     28     20
D183V7, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             4              32
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP6 MUTATED        5      2      0
  AGAP6 WILD-TYPE     84     33     22
D183V8, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             2              33
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP6 MUTATED        5      1      1
  AGAP6 WILD-TYPE     57     50     30
D183V9, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             1              50
  CLUS_3             1              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP6 MUTATED        1      6      0
  AGAP6 WILD-TYPE     74     39     24
D183V10, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             6              39
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(184) Variable = NGF MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NGF MUTATED        3      1      0
  NGF WILD-TYPE     63     64     14
D184V1, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           3            63
  CLUS_2           1            64
  CLUS_3           0            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGF MUTATED        1      0      2      1
  NGF WILD-TYPE     37     29     43     33
D184V2, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           1            37
  CLUS_2           0            29
  CLUS_3           2            43
  CLUS_4           1            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NGF MUTATED        1      2      1      0      0
  NGF WILD-TYPE     33     14     10     11     13
D184V3, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           1            33
  CLUS_2           2            14
  CLUS_3           1            10
  CLUS_4           0            11
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NGF MUTATED        0      2      1      0      0      0      1
  NGF WILD-TYPE     12     15     20      9      6     14      5
D184V4, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           0            12
  CLUS_2           2            15
  CLUS_3           1            20
  CLUS_4           0             9
  CLUS_5           0             6
  CLUS_6           0            14
  CLUS_7           1             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NGF MUTATED        2      1      1
  NGF WILD-TYPE     69     42     31
D184V5, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           2            69
  CLUS_2           1            42
  CLUS_3           1            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NGF MUTATED        1      3      0
  NGF WILD-TYPE     66     60     16
D184V6, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           1            66
  CLUS_2           3            60
  CLUS_3           0            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGF MUTATED        1      1      1      1
  NGF WILD-TYPE     61     35     27     19
D184V7, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           1            61
  CLUS_2           1            35
  CLUS_3           1            27
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NGF MUTATED        4      0      0
  NGF WILD-TYPE     85     35     22
D184V8, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           4            85
  CLUS_2           0            35
  CLUS_3           0            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NGF MUTATED        3      0      1
  NGF WILD-TYPE     59     51     30
D184V9, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           3            59
  CLUS_2           0            51
  CLUS_3           1            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NGF MUTATED        3      1      0
  NGF WILD-TYPE     72     44     24
D184V10, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           3            72
  CLUS_2           1            44
  CLUS_3           0            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(185) Variable = SARS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SARS2 MUTATED        2      1      0
  SARS2 WILD-TYPE     64     64     14
D185V1, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             2              64
  CLUS_2             1              64
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SARS2 MUTATED        2      0      1      0
  SARS2 WILD-TYPE     36     29     44     34
D185V2, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SARS2 MUTATED        0      1      1      0      0
  SARS2 WILD-TYPE     34     15     10     11     13
D185V3, multiclass
[1] "Remove cluster labels:" "SARS2 MUTATED"         
clus
  SARS2 MUTATED SARS2 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-H6-A45N      TCGA-HV-A5A6 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SARS2 MUTATED        0      1      0      1      0      0      0
  SARS2 WILD-TYPE     12     16     21      8      6     14      6
D185V4, multiclass
[1] "Remove cluster labels:" "SARS2 MUTATED"         
clus
  SARS2 MUTATED SARS2 WILD-TYPE 
              2              83 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH      TCGA-3A-A9IU 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ      TCGA-F2-6879 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-H6-A45N      TCGA-HV-A5A6 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7925      TCGA-HZ-8001 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-HZ-8519      TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-M8-A5N4      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-AA9M      TCGA-S4-A8RM      TCGA-S4-A8RO 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-S4-A8RP      TCGA-US-A774      TCGA-US-A776      TCGA-US-A779 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77G      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"SARS2 WILD-TYPE" "SARS2 WILD-TYPE" "SARS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SARS2 MUTATED        2      1      0
  SARS2 WILD-TYPE     69     42     32
D185V5, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SARS2 MUTATED        2      1      0
  SARS2 WILD-TYPE     65     62     16
D185V6, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              62
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SARS2 MUTATED        2      1      0      0
  SARS2 WILD-TYPE     60     35     28     20
D185V7, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              35
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SARS2 MUTATED        2      1      0
  SARS2 WILD-TYPE     87     34     22
D185V8, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1              34
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SARS2 MUTATED        3      0      0
  SARS2 WILD-TYPE     59     51     31
D185V9, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              51
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SARS2 MUTATED        2      1      0
  SARS2 WILD-TYPE     73     44     24
D185V10, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(186) Variable = ADORA3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADORA3 MUTATED        2      2      1
  ADORA3 WILD-TYPE     64     63     13
D186V1, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              2               64
  CLUS_2              2               63
  CLUS_3              1               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADORA3 MUTATED        2      0      2      1
  ADORA3 WILD-TYPE     36     29     43     33
D186V2, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              0               29
  CLUS_3              2               43
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADORA3 MUTATED        3      0      2      0      0
  ADORA3 WILD-TYPE     31     16      9     11     13
D186V3, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              3               31
  CLUS_2              0               16
  CLUS_3              2                9
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADORA3 MUTATED        0      0      3      1      0      0      1
  ADORA3 WILD-TYPE     12     17     18      8      6     14      5
D186V4, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              0               12
  CLUS_2              0               17
  CLUS_3              3               18
  CLUS_4              1                8
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADORA3 MUTATED        2      3      0
  ADORA3 WILD-TYPE     69     40     32
D186V5, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              3               40
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADORA3 MUTATED        4      1      0
  ADORA3 WILD-TYPE     63     62     16
D186V6, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              4               63
  CLUS_2              1               62
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADORA3 MUTATED        3      2      0      0
  ADORA3 WILD-TYPE     59     34     28     20
D186V7, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              2               34
  CLUS_3              0               28
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADORA3 MUTATED        4      1      0
  ADORA3 WILD-TYPE     85     34     22
D186V8, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              1               34
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADORA3 MUTATED        3      1      1
  ADORA3 WILD-TYPE     59     50     30
D186V9, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               50
  CLUS_3              1               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADORA3 MUTATED        2      3      0
  ADORA3 WILD-TYPE     73     42     24
D186V10, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              2               73
  CLUS_2              3               42
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(187) Variable = LUZP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        0      4      0
  LUZP1 WILD-TYPE     66     61     14
D187V1, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             0              66
  CLUS_2             4              61
  CLUS_3             0              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUZP1 MUTATED        3      0      1      0
  LUZP1 WILD-TYPE     35     29     44     34
D187V2, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             0              29
  CLUS_3             1              44
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LUZP1 MUTATED        1      1      1      0      0
  LUZP1 WILD-TYPE     33     15     10     11     13
D187V3, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              15
  CLUS_3             1              10
  CLUS_4             0              11
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LUZP1 MUTATED        0      1      0      1      0      0      1
  LUZP1 WILD-TYPE     12     16     21      8      6     14      5
D187V4, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             0              12
  CLUS_2             1              16
  CLUS_3             0              21
  CLUS_4             1               8
  CLUS_5             0               6
  CLUS_6             0              14
  CLUS_7             1               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        3      1      0
  LUZP1 WILD-TYPE     68     42     32
D187V5, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              42
  CLUS_3             0              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        1      3      0
  LUZP1 WILD-TYPE     66     60     16
D187V6, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             3              60
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUZP1 MUTATED        3      1      0      0
  LUZP1 WILD-TYPE     59     35     28     20
D187V7, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              35
  CLUS_3             0              28
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        4      0      0
  LUZP1 WILD-TYPE     85     35     22
D187V8, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             0              35
  CLUS_3             0              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        4      0      0
  LUZP1 WILD-TYPE     58     51     31
D187V9, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              51
  CLUS_3             0              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        3      1      0
  LUZP1 WILD-TYPE     72     44     24
D187V10, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             1              44
  CLUS_3             0              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(188) Variable = ATP11B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11B MUTATED        2      1      1
  ATP11B WILD-TYPE     64     64     13
D188V1, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              2               64
  CLUS_2              1               64
  CLUS_3              1               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11B MUTATED        1      0      3      0
  ATP11B WILD-TYPE     37     29     42     34
D188V2, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              1               37
  CLUS_2              0               29
  CLUS_3              3               42
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP11B MUTATED        0      2      2      0      0
  ATP11B WILD-TYPE     34     14      9     11     13
D188V3, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              0               34
  CLUS_2              2               14
  CLUS_3              2                9
  CLUS_4              0               11
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP11B MUTATED        0      2      0      1      0      0      1
  ATP11B WILD-TYPE     12     15     21      8      6     14      5
D188V4, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              0               12
  CLUS_2              2               15
  CLUS_3              0               21
  CLUS_4              1                8
  CLUS_5              0                6
  CLUS_6              0               14
  CLUS_7              1                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11B MUTATED        3      1      0
  ATP11B WILD-TYPE     68     42     32
D188V5, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               42
  CLUS_3              0               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11B MUTATED        1      3      0
  ATP11B WILD-TYPE     66     60     16
D188V6, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              1               66
  CLUS_2              3               60
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11B MUTATED        3      1      0      0
  ATP11B WILD-TYPE     59     35     28     20
D188V7, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               35
  CLUS_3              0               28
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11B MUTATED        4      0      0
  ATP11B WILD-TYPE     85     35     22
D188V8, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              4               85
  CLUS_2              0               35
  CLUS_3              0               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11B MUTATED        4      0      0
  ATP11B WILD-TYPE     58     51     31
D188V9, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               51
  CLUS_3              0               31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11B MUTATED        3      1      0
  ATP11B WILD-TYPE     72     44     24
D188V10, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              3               72
  CLUS_2              1               44
  CLUS_3              0               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(189) Variable = RAG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        1      3      0
  RAG1 WILD-TYPE     65     62     14
D189V1, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            1             65
  CLUS_2            3             62
  CLUS_3            0             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1 MUTATED        3      0      1      0
  RAG1 WILD-TYPE     35     29     44     34
D189V2, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            3             35
  CLUS_2            0             29
  CLUS_3            1             44
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAG1 MUTATED        0      0      1      0      0
  RAG1 WILD-TYPE     34     16     10     11     13
D189V3, multiclass
[1] "Remove cluster labels:" "RAG1 MUTATED"          
clus
  RAG1 MUTATED RAG1 WILD-TYPE 
             1             84 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-HZ-8315     TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAG1 MUTATED        0      0      0      0      0      0      1
  RAG1 WILD-TYPE     12     17     21      9      6     14      5
D189V4, multiclass
[1] "Remove cluster labels:" "RAG1 MUTATED"          
clus
  RAG1 MUTATED RAG1 WILD-TYPE 
             1             84 
    TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH     TCGA-3A-A9IU 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ     TCGA-F2-6879 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-H6-A45N 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7925 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-HZ-8315     TCGA-HZ-8519     TCGA-HZ-A4BH     TCGA-HZ-A4BK 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-M8-A5N4     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RM 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-S4-A8RP     TCGA-US-A774     TCGA-US-A776 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-XD-AAUL 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" "RAG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        2      1      1
  RAG1 WILD-TYPE     69     42     31
D189V5, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             42
  CLUS_3            1             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        2      2      0
  RAG1 WILD-TYPE     65     61     16
D189V6, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            2             61
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1 MUTATED        2      1      0      1
  RAG1 WILD-TYPE     60     35     28     19
D189V7, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             35
  CLUS_3            0             28
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        4      0      0
  RAG1 WILD-TYPE     85     35     22
D189V8, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            0             35
  CLUS_3            0             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        3      1      0
  RAG1 WILD-TYPE     59     50     31
D189V9, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             50
  CLUS_3            0             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        3      1      0
  RAG1 WILD-TYPE     72     44     24
D189V10, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            3             72
  CLUS_2            1             44
  CLUS_3            0             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(190) Variable = HK2 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HK2 MUTATED        2      2      0
  HK2 WILD-TYPE     64     63     14
D190V1, multiclass
        clus
vv       HK2 MUTATED HK2 WILD-TYPE
  CLUS_1           2            64
  CLUS_2           2            63
  CLUS_3           0            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HK2 MUTATED        1      0      1      2
  HK2 WILD-TYPE     37     29     44     32
D190V2, multiclass
        clus
vv       HK2 MUTATED HK2 WILD-TYPE
  CLUS_1           1            37
  CLUS_2           0            29
  CLUS_3           1            44
  CLUS_4           2            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HK2 MUTATED        1      1      1      0      1
  HK2 WILD-TYPE     33     15     10     11     12
D190V3, multiclass
        clus
vv       HK2 MUTATED HK2 WILD-TYPE
  CLUS_1           1            33
  CLUS_2           1            15
  CLUS_3           1            10
  CLUS_4           0            11
  CLUS_5           1            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HK2 MUTATED        0      1      1      0      0      1      1
  HK2 WILD-TYPE     12     16     20      9      6     13      5
D190V4, multiclass
        clus
vv       HK2 MUTATED HK2 WILD-TYPE
  CLUS_1           0            12
  CLUS_2           1            16
  CLUS_3           1            20
  CLUS_4           0             9
  CLUS_5           0             6
  CLUS_6           1            13
  CLUS_7           1             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HK2 MUTATED        2      2      0
  HK2 WILD-TYPE     69     41     32
D190V5, multiclass
        clus
vv       HK2 MUTATED HK2 WILD-TYPE
  CLUS_1           2            69
  CLUS_2           2            41
  CLUS_3           0            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HK2 MUTATED        2      2      0
  HK2 WILD-TYPE     65     61     16
D190V6, multiclass
        clus
vv       HK2 MUTATED HK2 WILD-TYPE
  CLUS_1           2            65
  CLUS_2           2            61
  CLUS_3           0            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HK2 MUTATED        2      1      1      0
  HK2 WILD-TYPE     60     35     27     20
D190V7, multiclass
        clus
vv       HK2 MUTATED HK2 WILD-TYPE
  CLUS_1           2            60
  CLUS_2           1            35
  CLUS_3           1            27
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HK2 MUTATED        4      0      0
  HK2 WILD-TYPE     85     35     22
D190V8, multiclass
        clus
vv       HK2 MUTATED HK2 WILD-TYPE
  CLUS_1           4            85
  CLUS_2           0            35
  CLUS_3           0            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HK2 MUTATED        3      0      1
  HK2 WILD-TYPE     59     51     30
D190V9, multiclass
        clus
vv       HK2 MUTATED HK2 WILD-TYPE
  CLUS_1           3            59
  CLUS_2           0            51
  CLUS_3           1            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HK2 MUTATED        2      2      0
  HK2 WILD-TYPE     73     43     24
D190V10, multiclass
        clus
vv       HK2 MUTATED HK2 WILD-TYPE
  CLUS_1           2            73
  CLUS_2           2            43
  CLUS_3           0            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
