[1] "ofn"        "-oTPRAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/15115159/PRAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/15098590/transformed.cor.cli.txt"

nPatients in clinical file=498, in cluster file=492, common to both=492
[1]  65 492
[1] "AMP PEAK  1(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         40                         452 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         40                         452 
[1] "AMP PEAK  2(3Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE 
                           75                           417 
  AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE 
                           75                           417 
[1] "AMP PEAK  3(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           86                           406 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           86                           406 
[1] "AMP PEAK  4(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE 
                           20                           472 
  AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE 
                           20                           472 
[1] "AMP PEAK  5(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE 
                           22                           470 
  AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE 
                           22                           470 
[1] "AMP PEAK  6(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                           28                           464 
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                           28                           464 
[1] "AMP PEAK  7(7P14.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE 
                          104                           388 
  AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE 
                          104                           388 
[1] "AMP PEAK  8(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE 
                          101                           391 
  AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE 
                          101                           391 
[1] "AMP PEAK  9(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                            67                            425 
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                            67                            425 
[1] "AMP PEAK 10(8Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE 
                          157                           335 
  AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE 
                          157                           335 
[1] "AMP PEAK 11(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           152                            340 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           152                            340 
[1] "AMP PEAK 12(9Q33.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE 
                           62                           430 
  AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE 
                           62                           430 
[1] "AMP PEAK 13(11Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE 
                            48                            444 
  AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE 
                            48                            444 
[1] "AMP PEAK 14(12Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE 
                            36                            456 
  AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE 
                            36                            456 
[1] "AMP PEAK 15(13Q12.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE 
                             25                             467 
  AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE 
                             25                             467 
[1] "AMP PEAK 16(14Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE 
                            30                            462 
  AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE 
                            30                            462 
[1] "AMP PEAK 17(15Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE 
                            16                            476 
  AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE 
                            16                            476 
[1] "AMP PEAK 18(16Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE 
                            30                            462 
  AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE 
                            30                            462 
[1] "AMP PEAK 19(17Q23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q23.2) MUTATED AMP PEAK 19(17Q23.2) WILD-TYPE 
                            25                            467 
  AMP PEAK 19(17Q23.2) MUTATED AMP PEAK 19(17Q23.2) WILD-TYPE 
                            25                            467 
[1] "AMP PEAK 20(19Q13.43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(19Q13.43) MUTATED AMP PEAK 20(19Q13.43) WILD-TYPE 
                             19                             473 
  AMP PEAK 20(19Q13.43) MUTATED AMP PEAK 20(19Q13.43) WILD-TYPE 
                             19                             473 
[1] "AMP PEAK 21(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE 
                            45                            447 
  AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE 
                            45                            447 
[1] "AMP PEAK 22(XP22.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE 
                            26                            466 
  AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE 
                            26                            466 
[1] "AMP PEAK 23(XP22.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(XP22.11) MUTATED AMP PEAK 23(XP22.11) WILD-TYPE 
                            25                            467 
  AMP PEAK 23(XP22.11) MUTATED AMP PEAK 23(XP22.11) WILD-TYPE 
                            25                            467 
[1] "AMP PEAK 24(XP21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(XP21.1) MUTATED AMP PEAK 24(XP21.1) WILD-TYPE 
                           23                           469 
  AMP PEAK 24(XP21.1) MUTATED AMP PEAK 24(XP21.1) WILD-TYPE 
                           23                           469 
[1] "AMP PEAK 25(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                           16                           476 
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                           16                           476 
[1] "AMP PEAK 26(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE 
                           14                           478 
  AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE 
                           14                           478 
[1] "AMP PEAK 27(XQ25) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE 
                         19                         473 
  AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE 
                         19                         473 
[1] "AMP PEAK 28(XQ27.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(XQ27.1) MUTATED AMP PEAK 28(XQ27.1) WILD-TYPE 
                           19                           473 
  AMP PEAK 28(XQ27.1) MUTATED AMP PEAK 28(XQ27.1) WILD-TYPE 
                           19                           473 
[1] "DEL PEAK  1(1P31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           60                           432 
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           60                           432 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           58                           434 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           58                           434 
[1] "DEL PEAK  3(1Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE 
                           28                           464 
  DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE 
                           28                           464 
[1] "DEL PEAK  4(1Q42.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE 
                           47                           445 
  DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE 
                           47                           445 
[1] "DEL PEAK  5(2P21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE 
                         46                         446 
  DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE 
                         46                         446 
[1] "DEL PEAK  6(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE 
                           92                           400 
  DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE 
                           92                           400 
[1] "DEL PEAK  7(2Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE 
                           85                           407 
  DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE 
                           85                           407 
[1] "DEL PEAK  8(3P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE 
                         78                         414 
  DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE 
                         78                         414 
[1] "DEL PEAK  9(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE 
                         32                         460 
  DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE 
                         32                         460 
[1] "DEL PEAK 10(4Q28.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE 
                           51                           441 
  DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE 
                           51                           441 
[1] "DEL PEAK 11(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                          100                           392 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                          100                           392 
[1] "DEL PEAK 12(5Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE 
                           99                           393 
  DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE 
                           99                           393 
[1] "DEL PEAK 13(5Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE 
                          109                           383 
  DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE 
                          109                           383 
[1] "DEL PEAK 14(6P25.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE 
                           46                           446 
  DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE 
                           46                           446 
[1] "DEL PEAK 15(6Q14.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE 
                          180                           312 
  DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE 
                          180                           312 
[1] "DEL PEAK 16(7Q31.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(7Q31.33) MUTATED DEL PEAK 16(7Q31.33) WILD-TYPE 
                            28                            464 
  DEL PEAK 16(7Q31.33) MUTATED DEL PEAK 16(7Q31.33) WILD-TYPE 
                            28                            464 
[1] "DEL PEAK 17(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE 
                          224                           268 
  DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE 
                          224                           268 
[1] "DEL PEAK 18(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P21.3) MUTATED DEL PEAK 18(8P21.3) WILD-TYPE 
                          294                           198 
  DEL PEAK 18(8P21.3) MUTATED DEL PEAK 18(8P21.3) WILD-TYPE 
                          294                           198 
[1] "DEL PEAK 19(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9P23) MUTATED DEL PEAK 19(9P23) WILD-TYPE 
                         45                         447 
  DEL PEAK 19(9P23) MUTATED DEL PEAK 19(9P23) WILD-TYPE 
                         45                         447 
[1] "DEL PEAK 20(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            157                             335 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            157                             335 
[1] "DEL PEAK 21(11P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11P11.2) MUTATED DEL PEAK 21(11P11.2) WILD-TYPE 
                            34                            458 
  DEL PEAK 21(11P11.2) MUTATED DEL PEAK 21(11P11.2) WILD-TYPE 
                            34                            458 
[1] "DEL PEAK 22(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11Q22.3) MUTATED DEL PEAK 22(11Q22.3) WILD-TYPE 
                            43                            449 
  DEL PEAK 22(11Q22.3) MUTATED DEL PEAK 22(11Q22.3) WILD-TYPE 
                            43                            449 
[1] "DEL PEAK 23(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE 
                            48                            444 
  DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE 
                            48                            444 
[1] "DEL PEAK 24(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE 
                           124                            368 
  DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE 
                           124                            368 
[1] "DEL PEAK 25(12Q24.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(12Q24.32) MUTATED DEL PEAK 25(12Q24.32) WILD-TYPE 
                             43                             449 
  DEL PEAK 25(12Q24.32) MUTATED DEL PEAK 25(12Q24.32) WILD-TYPE 
                             43                             449 
[1] "DEL PEAK 26(13Q14.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(13Q14.13) MUTATED DEL PEAK 26(13Q14.13) WILD-TYPE 
                            227                             265 
  DEL PEAK 26(13Q14.13) MUTATED DEL PEAK 26(13Q14.13) WILD-TYPE 
                            227                             265 
[1] "DEL PEAK 27(13Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(13Q22.1) MUTATED DEL PEAK 27(13Q22.1) WILD-TYPE 
                           176                            316 
  DEL PEAK 27(13Q22.1) MUTATED DEL PEAK 27(13Q22.1) WILD-TYPE 
                           176                            316 
[1] "DEL PEAK 28(15Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(15Q21.3) MUTATED DEL PEAK 28(15Q21.3) WILD-TYPE 
                            67                            425 
  DEL PEAK 28(15Q21.3) MUTATED DEL PEAK 28(15Q21.3) WILD-TYPE 
                            67                            425 
[1] "DEL PEAK 29(16Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(16Q22.3) MUTATED DEL PEAK 29(16Q22.3) WILD-TYPE 
                           191                            301 
  DEL PEAK 29(16Q22.3) MUTATED DEL PEAK 29(16Q22.3) WILD-TYPE 
                           191                            301 
[1] "DEL PEAK 30(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(16Q24.1) MUTATED DEL PEAK 30(16Q24.1) WILD-TYPE 
                           213                            279 
  DEL PEAK 30(16Q24.1) MUTATED DEL PEAK 30(16Q24.1) WILD-TYPE 
                           213                            279 
[1] "DEL PEAK 31(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(17P13.1) MUTATED DEL PEAK 31(17P13.1) WILD-TYPE 
                           163                            329 
  DEL PEAK 31(17P13.1) MUTATED DEL PEAK 31(17P13.1) WILD-TYPE 
                           163                            329 
[1] "DEL PEAK 32(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE 
                             96                             396 
  DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE 
                             96                             396 
[1] "DEL PEAK 33(18Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(18Q21.31) MUTATED DEL PEAK 33(18Q21.31) WILD-TYPE 
                            131                             361 
  DEL PEAK 33(18Q21.31) MUTATED DEL PEAK 33(18Q21.31) WILD-TYPE 
                            131                             361 
[1] "DEL PEAK 34(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE 
                         137                          355 
  DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE 
                         137                          355 
[1] "DEL PEAK 35(19Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(19Q13.2) MUTATED DEL PEAK 35(19Q13.2) WILD-TYPE 
                            52                            440 
  DEL PEAK 35(19Q13.2) MUTATED DEL PEAK 35(19Q13.2) WILD-TYPE 
                            52                            440 
[1] "DEL PEAK 36(21Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(21Q22.2) MUTATED DEL PEAK 36(21Q22.2) WILD-TYPE 
                            52                            440 
  DEL PEAK 36(21Q22.2) MUTATED DEL PEAK 36(21Q22.2) WILD-TYPE 
                            52                            440 
[1] "DEL PEAK 37(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE 
                           147                            345 
  DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE 
                           147                            345 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 492 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 492 columns, 0 survival variables, and 8 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED       11     28      1
  AMP PEAK  1(1Q22) WILD-TYPE    262    106     84
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        11                         262
  CLUS_2                        28                         106
  CLUS_3                         1                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        6     17     17
  AMP PEAK  1(1Q22) WILD-TYPE    154    148    150
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         6                         154
  CLUS_2                        17                         148
  CLUS_3                        17                         150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        3     15     22
  AMP PEAK  1(1Q22) WILD-TYPE    143    156    152
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         3                         143
  CLUS_2                        15                         156
  CLUS_3                        22                         152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        3     25     12
  AMP PEAK  1(1Q22) WILD-TYPE    168    180    103
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         3                         168
  CLUS_2                        25                         180
  CLUS_3                        12                         103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        8      8     24
  AMP PEAK  1(1Q22) WILD-TYPE    150    139    159
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         8                         150
  CLUS_2                         8                         139
  CLUS_3                        24                         159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q22) MUTATED        5      7      5     22      1
  AMP PEAK  1(1Q22) WILD-TYPE    142     91     54    106     55
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         5                         142
  CLUS_2                         7                          91
  CLUS_3                         5                          54
  CLUS_4                        22                         106
  CLUS_5                         1                          55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        2     15      2      7
  AMP PEAK  1(1Q22) WILD-TYPE     60     91     58     83
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         2                          60
  CLUS_2                        15                          91
  CLUS_3                         2                          58
  CLUS_4                         7                          83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q22) MUTATED        1      2      5     13      1      4
  AMP PEAK  1(1Q22) WILD-TYPE     69     39     35     69     24     56
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         1                          69
  CLUS_2                         2                          39
  CLUS_3                         5                          35
  CLUS_4                        13                          69
  CLUS_5                         1                          24
  CLUS_6                         4                          56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(3Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       15     48     12
  AMP PEAK  2(3Q21.3) WILD-TYPE    258     86     73
D2V1, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          15                           258
  CLUS_2                          48                            86
  CLUS_3                          12                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       13     38     24
  AMP PEAK  2(3Q21.3) WILD-TYPE    147    127    143
D2V2, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          13                           147
  CLUS_2                          38                           127
  CLUS_3                          24                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       10     39     26
  AMP PEAK  2(3Q21.3) WILD-TYPE    136    132    148
D2V3, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          10                           136
  CLUS_2                          39                           132
  CLUS_3                          26                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       11     45     19
  AMP PEAK  2(3Q21.3) WILD-TYPE    160    160     96
D2V4, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          11                           160
  CLUS_2                          45                           160
  CLUS_3                          19                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       18     17     39
  AMP PEAK  2(3Q21.3) WILD-TYPE    140    130    144
D2V5, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          18                           140
  CLUS_2                          17                           130
  CLUS_3                          39                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(3Q21.3) MUTATED       12     15      6     35      6
  AMP PEAK  2(3Q21.3) WILD-TYPE    135     83     53     93     50
D2V6, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          12                           135
  CLUS_2                          15                            83
  CLUS_3                           6                            53
  CLUS_4                          35                            93
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(3Q21.3) MUTATED        2     22     10     12
  AMP PEAK  2(3Q21.3) WILD-TYPE     60     84     50     78
D2V7, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           2                            60
  CLUS_2                          22                            84
  CLUS_3                          10                            50
  CLUS_4                          12                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(3Q21.3) MUTATED        5      4     16     14      1      6
  AMP PEAK  2(3Q21.3) WILD-TYPE     65     37     24     68     24     54
D2V8, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           5                            65
  CLUS_2                           4                            37
  CLUS_3                          16                            24
  CLUS_4                          14                            68
  CLUS_5                           1                            24
  CLUS_6                           6                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       22     51     13
  AMP PEAK  3(3Q26.2) WILD-TYPE    251     83     72
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          22                           251
  CLUS_2                          51                            83
  CLUS_3                          13                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       20     38     28
  AMP PEAK  3(3Q26.2) WILD-TYPE    140    127    139
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          20                           140
  CLUS_2                          38                           127
  CLUS_3                          28                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       15     41     30
  AMP PEAK  3(3Q26.2) WILD-TYPE    131    130    144
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          15                           131
  CLUS_2                          41                           130
  CLUS_3                          30                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       19     46     21
  AMP PEAK  3(3Q26.2) WILD-TYPE    152    159     94
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          19                           152
  CLUS_2                          46                           159
  CLUS_3                          21                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       24     20     41
  AMP PEAK  3(3Q26.2) WILD-TYPE    134    127    142
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          24                           134
  CLUS_2                          20                           127
  CLUS_3                          41                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.2) MUTATED       17     16      8     36      8
  AMP PEAK  3(3Q26.2) WILD-TYPE    130     82     51     92     48
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          17                           130
  CLUS_2                          16                            82
  CLUS_3                           8                            51
  CLUS_4                          36                            92
  CLUS_5                           8                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.2) MUTATED        5     25     14      9
  AMP PEAK  3(3Q26.2) WILD-TYPE     57     81     46     81
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           5                            57
  CLUS_2                          25                            81
  CLUS_3                          14                            46
  CLUS_4                           9                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.2) MUTATED        4      6     17     19      4      3
  AMP PEAK  3(3Q26.2) WILD-TYPE     66     35     23     63     21     57
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           6                            35
  CLUS_3                          17                            23
  CLUS_4                          19                            63
  CLUS_5                           4                            21
  CLUS_6                           3                            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4P16.3) MUTATED        2     17      1
  AMP PEAK  4(4P16.3) WILD-TYPE    271    117     84
D4V1, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           2                           271
  CLUS_2                          17                           117
  CLUS_3                           1                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4P16.3) MUTATED        1     11      8
  AMP PEAK  4(4P16.3) WILD-TYPE    159    154    159
D4V2, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           1                           159
  CLUS_2                          11                           154
  CLUS_3                           8                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4P16.3) MUTATED        1     11      8
  AMP PEAK  4(4P16.3) WILD-TYPE    145    160    166
D4V3, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           1                           145
  CLUS_2                          11                           160
  CLUS_3                           8                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4P16.3) MUTATED        4     13      3
  AMP PEAK  4(4P16.3) WILD-TYPE    167    192    112
D4V4, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           4                           167
  CLUS_2                          13                           192
  CLUS_3                           3                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4P16.3) MUTATED        4      5     10
  AMP PEAK  4(4P16.3) WILD-TYPE    154    142    173
D4V5, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           4                           154
  CLUS_2                           5                           142
  CLUS_3                          10                           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(4P16.3) MUTATED        4      2      1     11      1
  AMP PEAK  4(4P16.3) WILD-TYPE    143     96     58    117     55
D4V6, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           4                           143
  CLUS_2                           2                            96
  CLUS_3                           1                            58
  CLUS_4                          11                           117
  CLUS_5                           1                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4P16.3) MUTATED        2      5      1      5
  AMP PEAK  4(4P16.3) WILD-TYPE     60    101     59     85
D4V7, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           2                            60
  CLUS_2                           5                           101
  CLUS_3                           1                            59
  CLUS_4                           5                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4P16.3) MUTATED        1      1      1      6      1      3
  AMP PEAK  4(4P16.3) WILD-TYPE     69     40     39     76     24     57
D4V8, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           1                            69
  CLUS_2                           1                            40
  CLUS_3                           1                            39
  CLUS_4                           6                            76
  CLUS_5                           1                            24
  CLUS_6                           3                            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q13.3) MUTATED        5     17      0
  AMP PEAK  5(4Q13.3) WILD-TYPE    268    117     85
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           5                           268
  CLUS_2                          17                           117
  CLUS_3                           0                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q13.3) MUTATED        6     10      6
  AMP PEAK  5(4Q13.3) WILD-TYPE    154    155    161
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           6                           154
  CLUS_2                          10                           155
  CLUS_3                           6                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q13.3) MUTATED        3     12      7
  AMP PEAK  5(4Q13.3) WILD-TYPE    143    159    167
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           3                           143
  CLUS_2                          12                           159
  CLUS_3                           7                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q13.3) MUTATED        5     13      4
  AMP PEAK  5(4Q13.3) WILD-TYPE    166    192    111
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           5                           166
  CLUS_2                          13                           192
  CLUS_3                           4                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q13.3) MUTATED        4      3     14
  AMP PEAK  5(4Q13.3) WILD-TYPE    154    144    169
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           4                           154
  CLUS_2                           3                           144
  CLUS_3                          14                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q13.3) MUTATED        3      5      3     10      0
  AMP PEAK  5(4Q13.3) WILD-TYPE    144     93     56    118     56
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           3                           144
  CLUS_2                           5                            93
  CLUS_3                           3                            56
  CLUS_4                          10                           118
  CLUS_5                           0                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q13.3) MUTATED        1      6      4      0
  AMP PEAK  5(4Q13.3) WILD-TYPE     61    100     56     90
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           1                            61
  CLUS_2                           6                           100
  CLUS_3                           4                            56
  CLUS_4                           0                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q13.3) MUTATED        1      1      3      5      1      0
  AMP PEAK  5(4Q13.3) WILD-TYPE     69     40     37     77     24     60
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           1                            69
  CLUS_2                           1                            40
  CLUS_3                           3                            37
  CLUS_4                           5                            77
  CLUS_5                           1                            24
  CLUS_6                           0                            60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5Q35.3) MUTATED        4     24      0
  AMP PEAK  6(5Q35.3) WILD-TYPE    269    110     85
D6V1, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           4                           269
  CLUS_2                          24                           110
  CLUS_3                           0                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5Q35.3) MUTATED        3     15     10
  AMP PEAK  6(5Q35.3) WILD-TYPE    157    150    157
D6V2, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           3                           157
  CLUS_2                          15                           150
  CLUS_3                          10                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5Q35.3) MUTATED        3     13     12
  AMP PEAK  6(5Q35.3) WILD-TYPE    143    158    162
D6V3, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           3                           143
  CLUS_2                          13                           158
  CLUS_3                          12                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5Q35.3) MUTATED        4     16      8
  AMP PEAK  6(5Q35.3) WILD-TYPE    167    189    107
D6V4, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           4                           167
  CLUS_2                          16                           189
  CLUS_3                           8                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5Q35.3) MUTATED        8      5     15
  AMP PEAK  6(5Q35.3) WILD-TYPE    150    142    168
D6V5, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           8                           150
  CLUS_2                           5                           142
  CLUS_3                          15                           168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5Q35.3) MUTATED        6      6      0     16      0
  AMP PEAK  6(5Q35.3) WILD-TYPE    141     92     59    112     56
D6V6, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           6                           141
  CLUS_2                           6                            92
  CLUS_3                           0                            59
  CLUS_4                          16                           112
  CLUS_5                           0                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5Q35.3) MUTATED        1     13      2      3
  AMP PEAK  6(5Q35.3) WILD-TYPE     61     93     58     87
D6V7, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           1                            61
  CLUS_2                          13                            93
  CLUS_3                           2                            58
  CLUS_4                           3                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5Q35.3) MUTATED        4      1      3      9      0      2
  AMP PEAK  6(5Q35.3) WILD-TYPE     66     40     37     73     25     58
D6V8, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           1                            40
  CLUS_3                           3                            37
  CLUS_4                           9                            73
  CLUS_5                           0                            25
  CLUS_6                           2                            58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(7P14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P14.3) MUTATED       13     69     22
  AMP PEAK  7(7P14.3) WILD-TYPE    260     65     63
D7V1, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          13                           260
  CLUS_2                          69                            65
  CLUS_3                          22                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P14.3) MUTATED       14     60     30
  AMP PEAK  7(7P14.3) WILD-TYPE    146    105    137
D7V2, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          14                           146
  CLUS_2                          60                           105
  CLUS_3                          30                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P14.3) MUTATED       11     64     29
  AMP PEAK  7(7P14.3) WILD-TYPE    135    107    145
D7V3, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          11                           135
  CLUS_2                          64                           107
  CLUS_3                          29                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P14.3) MUTATED       22     64     18
  AMP PEAK  7(7P14.3) WILD-TYPE    149    141     97
D7V4, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          22                           149
  CLUS_2                          64                           141
  CLUS_3                          18                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P14.3) MUTATED       21     31     51
  AMP PEAK  7(7P14.3) WILD-TYPE    137    116    132
D7V5, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          21                           137
  CLUS_2                          31                           116
  CLUS_3                          51                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7P14.3) MUTATED       17     28     13     38      7
  AMP PEAK  7(7P14.3) WILD-TYPE    130     70     46     90     49
D7V6, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          17                           130
  CLUS_2                          28                            70
  CLUS_3                          13                            46
  CLUS_4                          38                            90
  CLUS_5                           7                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P14.3) MUTATED        5     35     10     20
  AMP PEAK  7(7P14.3) WILD-TYPE     57     71     50     70
D7V7, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                           5                            57
  CLUS_2                          35                            71
  CLUS_3                          10                            50
  CLUS_4                          20                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7P14.3) MUTATED        6     12     12     24      3     13
  AMP PEAK  7(7P14.3) WILD-TYPE     64     29     28     58     22     47
D7V8, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                           6                            64
  CLUS_2                          12                            29
  CLUS_3                          12                            28
  CLUS_4                          24                            58
  CLUS_5                           3                            22
  CLUS_6                          13                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(7Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q22.1) MUTATED       13     66     22
  AMP PEAK  8(7Q22.1) WILD-TYPE    260     68     63
D8V1, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          13                           260
  CLUS_2                          66                            68
  CLUS_3                          22                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q22.1) MUTATED       15     59     27
  AMP PEAK  8(7Q22.1) WILD-TYPE    145    106    140
D8V2, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          15                           145
  CLUS_2                          59                           106
  CLUS_3                          27                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q22.1) MUTATED       11     64     26
  AMP PEAK  8(7Q22.1) WILD-TYPE    135    107    148
D8V3, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          11                           135
  CLUS_2                          64                           107
  CLUS_3                          26                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q22.1) MUTATED       22     64     15
  AMP PEAK  8(7Q22.1) WILD-TYPE    149    141    100
D8V4, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          22                           149
  CLUS_2                          64                           141
  CLUS_3                          15                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q22.1) MUTATED       20     32     48
  AMP PEAK  8(7Q22.1) WILD-TYPE    138    115    135
D8V5, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          20                           138
  CLUS_2                          32                           115
  CLUS_3                          48                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7Q22.1) MUTATED       13     30     16     36      5
  AMP PEAK  8(7Q22.1) WILD-TYPE    134     68     43     92     51
D8V6, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          13                           134
  CLUS_2                          30                            68
  CLUS_3                          16                            43
  CLUS_4                          36                            92
  CLUS_5                           5                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q22.1) MUTATED        4     35     12     18
  AMP PEAK  8(7Q22.1) WILD-TYPE     58     71     48     72
D8V7, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                           4                            58
  CLUS_2                          35                            71
  CLUS_3                          12                            48
  CLUS_4                          18                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(7Q22.1) MUTATED        6     12     12     25      2     12
  AMP PEAK  8(7Q22.1) WILD-TYPE     64     29     28     57     23     48
D8V8, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                           6                            64
  CLUS_2                          12                            29
  CLUS_3                          12                            28
  CLUS_4                          25                            57
  CLUS_5                           2                            23
  CLUS_6                          12                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED        9     49      9
  AMP PEAK  9(8P11.23) WILD-TYPE    264     85     76
D9V1, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                            9                            264
  CLUS_2                           49                             85
  CLUS_3                            9                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED        8     45     14
  AMP PEAK  9(8P11.23) WILD-TYPE    152    120    153
D9V2, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                            8                            152
  CLUS_2                           45                            120
  CLUS_3                           14                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED       10     43     14
  AMP PEAK  9(8P11.23) WILD-TYPE    136    128    160
D9V3, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           10                            136
  CLUS_2                           43                            128
  CLUS_3                           14                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED       13     43     11
  AMP PEAK  9(8P11.23) WILD-TYPE    158    162    104
D9V4, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           13                            158
  CLUS_2                           43                            162
  CLUS_3                           11                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED       14     19     33
  AMP PEAK  9(8P11.23) WILD-TYPE    144    128    150
D9V5, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           14                            144
  CLUS_2                           19                            128
  CLUS_3                           33                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8P11.23) MUTATED       10     12      6     31      7
  AMP PEAK  9(8P11.23) WILD-TYPE    137     86     53     97     49
D9V6, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           10                            137
  CLUS_2                           12                             86
  CLUS_3                            6                             53
  CLUS_4                           31                             97
  CLUS_5                            7                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.23) MUTATED        2     31      4      8
  AMP PEAK  9(8P11.23) WILD-TYPE     60     75     56     82
D9V7, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                            2                             60
  CLUS_2                           31                             75
  CLUS_3                            4                             56
  CLUS_4                            8                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8P11.23) MUTATED        5      5      4     25      1      5
  AMP PEAK  9(8P11.23) WILD-TYPE     65     36     36     57     24     55
D9V8, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                            5                             65
  CLUS_2                            5                             36
  CLUS_3                            4                             36
  CLUS_4                           25                             57
  CLUS_5                            1                             24
  CLUS_6                            5                             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q22.1) MUTATED       45    100     12
  AMP PEAK 10(8Q22.1) WILD-TYPE    228     34     73
D10V1, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          45                           228
  CLUS_2                         100                            34
  CLUS_3                          12                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q22.1) MUTATED       25     83     49
  AMP PEAK 10(8Q22.1) WILD-TYPE    135     82    118
D10V2, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          25                           135
  CLUS_2                          83                            82
  CLUS_3                          49                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q22.1) MUTATED       27     74     56
  AMP PEAK 10(8Q22.1) WILD-TYPE    119     97    118
D10V3, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          27                           119
  CLUS_2                          74                            97
  CLUS_3                          56                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q22.1) MUTATED       31     90     36
  AMP PEAK 10(8Q22.1) WILD-TYPE    140    115     79
D10V4, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          31                           140
  CLUS_2                          90                           115
  CLUS_3                          36                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q22.1) MUTATED       38     36     81
  AMP PEAK 10(8Q22.1) WILD-TYPE    120    111    102
D10V5, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          38                           120
  CLUS_2                          36                           111
  CLUS_3                          81                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8Q22.1) MUTATED       25     29     24     65     12
  AMP PEAK 10(8Q22.1) WILD-TYPE    122     69     35     63     44
D10V6, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          25                           122
  CLUS_2                          29                            69
  CLUS_3                          24                            35
  CLUS_4                          65                            63
  CLUS_5                          12                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q22.1) MUTATED       10     56     12     23
  AMP PEAK 10(8Q22.1) WILD-TYPE     52     50     48     67
D10V7, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          10                            52
  CLUS_2                          56                            50
  CLUS_3                          12                            48
  CLUS_4                          23                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8Q22.1) MUTATED       12      9     16     43      6     15
  AMP PEAK 10(8Q22.1) WILD-TYPE     58     32     24     39     19     45
D10V8, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          12                            58
  CLUS_2                           9                            32
  CLUS_3                          16                            24
  CLUS_4                          43                            39
  CLUS_5                           6                            19
  CLUS_6                          15                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       43     98     11
  AMP PEAK 11(8Q24.21) WILD-TYPE    230     36     74
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           43                            230
  CLUS_2                           98                             36
  CLUS_3                           11                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       25     80     47
  AMP PEAK 11(8Q24.21) WILD-TYPE    135     85    120
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           25                            135
  CLUS_2                           80                             85
  CLUS_3                           47                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       24     76     52
  AMP PEAK 11(8Q24.21) WILD-TYPE    122     95    122
D11V3, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           24                            122
  CLUS_2                           76                             95
  CLUS_3                           52                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       29     90     33
  AMP PEAK 11(8Q24.21) WILD-TYPE    142    115     82
D11V4, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           29                            142
  CLUS_2                           90                            115
  CLUS_3                           33                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       33     35     82
  AMP PEAK 11(8Q24.21) WILD-TYPE    125    112    101
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           33                            125
  CLUS_2                           35                            112
  CLUS_3                           82                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8Q24.21) MUTATED       21     29     23     65     12
  AMP PEAK 11(8Q24.21) WILD-TYPE    126     69     36     63     44
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           21                            126
  CLUS_2                           29                             69
  CLUS_3                           23                             36
  CLUS_4                           65                             63
  CLUS_5                           12                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       10     53     14     21
  AMP PEAK 11(8Q24.21) WILD-TYPE     52     53     46     69
D11V7, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           10                             52
  CLUS_2                           53                             53
  CLUS_3                           14                             46
  CLUS_4                           21                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED       13      9     15     41      6     14
  AMP PEAK 11(8Q24.21) WILD-TYPE     57     32     25     41     19     46
D11V8, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                            9                             32
  CLUS_3                           15                             25
  CLUS_4                           41                             41
  CLUS_5                            6                             19
  CLUS_6                           14                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(9Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9Q33.3) MUTATED        9     53      0
  AMP PEAK 12(9Q33.3) WILD-TYPE    264     81     85
D12V1, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                           9                           264
  CLUS_2                          53                            81
  CLUS_3                           0                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9Q33.3) MUTATED       11     24     27
  AMP PEAK 12(9Q33.3) WILD-TYPE    149    141    140
D12V2, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                          11                           149
  CLUS_2                          24                           141
  CLUS_3                          27                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9Q33.3) MUTATED        8     23     31
  AMP PEAK 12(9Q33.3) WILD-TYPE    138    148    143
D12V3, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                           8                           138
  CLUS_2                          23                           148
  CLUS_3                          31                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9Q33.3) MUTATED       12     34     16
  AMP PEAK 12(9Q33.3) WILD-TYPE    159    171     99
D12V4, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                          12                           159
  CLUS_2                          34                           171
  CLUS_3                          16                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9Q33.3) MUTATED       14     14     33
  AMP PEAK 12(9Q33.3) WILD-TYPE    144    133    150
D12V5, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                          14                           144
  CLUS_2                          14                           133
  CLUS_3                          33                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(9Q33.3) MUTATED       10     10      7     30      4
  AMP PEAK 12(9Q33.3) WILD-TYPE    137     88     52     98     52
D12V6, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                          10                           137
  CLUS_2                          10                            88
  CLUS_3                           7                            52
  CLUS_4                          30                            98
  CLUS_5                           4                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(9Q33.3) MUTATED        2     19      4      9
  AMP PEAK 12(9Q33.3) WILD-TYPE     60     87     56     81
D12V7, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                           2                            60
  CLUS_2                          19                            87
  CLUS_3                           4                            56
  CLUS_4                           9                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(9Q33.3) MUTATED        3      2     10     13      1      5
  AMP PEAK 12(9Q33.3) WILD-TYPE     67     39     30     69     24     55
D12V8, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                           3                            67
  CLUS_2                           2                            39
  CLUS_3                          10                            30
  CLUS_4                          13                            69
  CLUS_5                           1                            24
  CLUS_6                           5                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(11Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.2) MUTATED        7     39      2
  AMP PEAK 13(11Q13.2) WILD-TYPE    266     95     83
D13V1, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            7                            266
  CLUS_2                           39                             95
  CLUS_3                            2                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.2) MUTATED        8     25     15
  AMP PEAK 13(11Q13.2) WILD-TYPE    152    140    152
D13V2, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            8                            152
  CLUS_2                           25                            140
  CLUS_3                           15                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.2) MUTATED        7     26     15
  AMP PEAK 13(11Q13.2) WILD-TYPE    139    145    159
D13V3, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            7                            139
  CLUS_2                           26                            145
  CLUS_3                           15                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.2) MUTATED        8     33      7
  AMP PEAK 13(11Q13.2) WILD-TYPE    163    172    108
D13V4, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            8                            163
  CLUS_2                           33                            172
  CLUS_3                            7                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.2) MUTATED       10     11     26
  AMP PEAK 13(11Q13.2) WILD-TYPE    148    136    157
D13V5, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                           10                            148
  CLUS_2                           11                            136
  CLUS_3                           26                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(11Q13.2) MUTATED        6     11      5     24      1
  AMP PEAK 13(11Q13.2) WILD-TYPE    141     87     54    104     55
D13V6, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            6                            141
  CLUS_2                           11                             87
  CLUS_3                            5                             54
  CLUS_4                           24                            104
  CLUS_5                            1                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.2) MUTATED        1     17      6      5
  AMP PEAK 13(11Q13.2) WILD-TYPE     61     89     54     85
D13V7, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            1                             61
  CLUS_2                           17                             89
  CLUS_3                            6                             54
  CLUS_4                            5                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q13.2) MUTATED        3      2      8     11      0      5
  AMP PEAK 13(11Q13.2) WILD-TYPE     67     39     32     71     25     55
D13V8, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            3                             67
  CLUS_2                            2                             39
  CLUS_3                            8                             32
  CLUS_4                           11                             71
  CLUS_5                            0                             25
  CLUS_6                            5                             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q23.1) MUTATED       12     23      1
  AMP PEAK 14(12Q23.1) WILD-TYPE    261    111     84
D14V1, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                           12                            261
  CLUS_2                           23                            111
  CLUS_3                            1                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q23.1) MUTATED        8     22      6
  AMP PEAK 14(12Q23.1) WILD-TYPE    152    143    161
D14V2, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            8                            152
  CLUS_2                           22                            143
  CLUS_3                            6                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q23.1) MUTATED        9     19      8
  AMP PEAK 14(12Q23.1) WILD-TYPE    137    152    166
D14V3, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            9                            137
  CLUS_2                           19                            152
  CLUS_3                            8                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q23.1) MUTATED        8     26      2
  AMP PEAK 14(12Q23.1) WILD-TYPE    163    179    113
D14V4, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            8                            163
  CLUS_2                           26                            179
  CLUS_3                            2                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q23.1) MUTATED       12      8     15
  AMP PEAK 14(12Q23.1) WILD-TYPE    146    139    168
D14V5, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                           12                            146
  CLUS_2                            8                            139
  CLUS_3                           15                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12Q23.1) MUTATED        7      6      3     19      0
  AMP PEAK 14(12Q23.1) WILD-TYPE    140     92     56    109     56
D14V6, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            7                            140
  CLUS_2                            6                             92
  CLUS_3                            3                             56
  CLUS_4                           19                            109
  CLUS_5                            0                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q23.1) MUTATED        3     12      4      4
  AMP PEAK 14(12Q23.1) WILD-TYPE     59     94     56     86
D14V7, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            3                             59
  CLUS_2                           12                             94
  CLUS_3                            4                             56
  CLUS_4                            4                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(12Q23.1) MUTATED        4      1      7      7      2      2
  AMP PEAK 14(12Q23.1) WILD-TYPE     66     40     33     75     23     58
D14V8, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            4                             66
  CLUS_2                            1                             40
  CLUS_3                            7                             33
  CLUS_4                            7                             75
  CLUS_5                            2                             23
  CLUS_6                            2                             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q12.11) MUTATED        4     20      1
  AMP PEAK 15(13Q12.11) WILD-TYPE    269    114     84
D15V1, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             4                             269
  CLUS_2                            20                             114
  CLUS_3                             1                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q12.11) MUTATED        1     11     13
  AMP PEAK 15(13Q12.11) WILD-TYPE    159    154    154
D15V2, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             1                             159
  CLUS_2                            11                             154
  CLUS_3                            13                             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q12.11) MUTATED        1     13     11
  AMP PEAK 15(13Q12.11) WILD-TYPE    145    158    163
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             1                             145
  CLUS_2                            13                             158
  CLUS_3                            11                             163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q12.11) MUTATED        4     14      7
  AMP PEAK 15(13Q12.11) WILD-TYPE    167    191    108
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             4                             167
  CLUS_2                            14                             191
  CLUS_3                             7                             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q12.11) MUTATED        4      4     16
  AMP PEAK 15(13Q12.11) WILD-TYPE    154    143    167
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             4                             154
  CLUS_2                             4                             143
  CLUS_3                            16                             167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q12.11) MUTATED        2      4      5     11      2
  AMP PEAK 15(13Q12.11) WILD-TYPE    145     94     54    117     54
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             2                             145
  CLUS_2                             4                              94
  CLUS_3                             5                              54
  CLUS_4                            11                             117
  CLUS_5                             2                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q12.11) MUTATED        1     10      1      3
  AMP PEAK 15(13Q12.11) WILD-TYPE     61     96     59     87
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             1                              61
  CLUS_2                            10                              96
  CLUS_3                             1                              59
  CLUS_4                             3                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q12.11) MUTATED        1      0      3      8      0      3
  AMP PEAK 15(13Q12.11) WILD-TYPE     69     41     37     74     25     57
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             1                              69
  CLUS_2                             0                              41
  CLUS_3                             3                              37
  CLUS_4                             8                              74
  CLUS_5                             0                              25
  CLUS_6                             3                              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(14Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(14Q21.1) MUTATED        1     25      4
  AMP PEAK 16(14Q21.1) WILD-TYPE    272    109     81
D16V1, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            1                            272
  CLUS_2                           25                            109
  CLUS_3                            4                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(14Q21.1) MUTATED        5     15     10
  AMP PEAK 16(14Q21.1) WILD-TYPE    155    150    157
D16V2, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            5                            155
  CLUS_2                           15                            150
  CLUS_3                           10                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(14Q21.1) MUTATED        3     17     10
  AMP PEAK 16(14Q21.1) WILD-TYPE    143    154    164
D16V3, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            3                            143
  CLUS_2                           17                            154
  CLUS_3                           10                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(14Q21.1) MUTATED        5     19      6
  AMP PEAK 16(14Q21.1) WILD-TYPE    166    186    109
D16V4, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            5                            166
  CLUS_2                           19                            186
  CLUS_3                            6                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(14Q21.1) MUTATED        4      7     19
  AMP PEAK 16(14Q21.1) WILD-TYPE    154    140    164
D16V5, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            4                            154
  CLUS_2                            7                            140
  CLUS_3                           19                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(14Q21.1) MUTATED        3      5      3     16      3
  AMP PEAK 16(14Q21.1) WILD-TYPE    144     93     56    112     53
D16V6, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            3                            144
  CLUS_2                            5                             93
  CLUS_3                            3                             56
  CLUS_4                           16                            112
  CLUS_5                            3                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(14Q21.1) MUTATED        1     13      3      6
  AMP PEAK 16(14Q21.1) WILD-TYPE     61     93     57     84
D16V7, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            1                             61
  CLUS_2                           13                             93
  CLUS_3                            3                             57
  CLUS_4                            6                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(14Q21.1) MUTATED        1      2      7      9      1      3
  AMP PEAK 16(14Q21.1) WILD-TYPE     69     39     33     73     24     57
D16V8, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            1                             69
  CLUS_2                            2                             39
  CLUS_3                            7                             33
  CLUS_4                            9                             73
  CLUS_5                            1                             24
  CLUS_6                            3                             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q11.2) MUTATED        5     10      1
  AMP PEAK 17(15Q11.2) WILD-TYPE    268    124     84
D17V1, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            5                            268
  CLUS_2                           10                            124
  CLUS_3                            1                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q11.2) MUTATED        3      7      6
  AMP PEAK 17(15Q11.2) WILD-TYPE    157    158    161
D17V2, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            3                            157
  CLUS_2                            7                            158
  CLUS_3                            6                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q11.2) MUTATED        4      6      6
  AMP PEAK 17(15Q11.2) WILD-TYPE    142    165    168
D17V3, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            4                            142
  CLUS_2                            6                            165
  CLUS_3                            6                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q11.2) MUTATED        4      9      3
  AMP PEAK 17(15Q11.2) WILD-TYPE    167    196    112
D17V4, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            4                            167
  CLUS_2                            9                            196
  CLUS_3                            3                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q11.2) MUTATED        3      3     10
  AMP PEAK 17(15Q11.2) WILD-TYPE    155    144    173
D17V5, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            3                            155
  CLUS_2                            3                            144
  CLUS_3                           10                            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q11.2) MUTATED        4      2      2      7      1
  AMP PEAK 17(15Q11.2) WILD-TYPE    143     96     57    121     55
D17V6, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            4                            143
  CLUS_2                            2                             96
  CLUS_3                            2                             57
  CLUS_4                            7                            121
  CLUS_5                            1                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q11.2) MUTATED        0      4      2      3
  AMP PEAK 17(15Q11.2) WILD-TYPE     62    102     58     87
D17V7, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            0                             62
  CLUS_2                            4                            102
  CLUS_3                            2                             58
  CLUS_4                            3                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(15Q11.2) MUTATED        1      0      4      2      0      2
  AMP PEAK 17(15Q11.2) WILD-TYPE     69     41     36     80     25     58
D17V8, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            1                             69
  CLUS_2                            0                             41
  CLUS_3                            4                             36
  CLUS_4                            2                             80
  CLUS_5                            0                             25
  CLUS_6                            2                             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(16Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16Q11.2) MUTATED        8     21      1
  AMP PEAK 18(16Q11.2) WILD-TYPE    265    113     84
D18V1, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            8                            265
  CLUS_2                           21                            113
  CLUS_3                            1                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16Q11.2) MUTATED        5     13     12
  AMP PEAK 18(16Q11.2) WILD-TYPE    155    152    155
D18V2, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            5                            155
  CLUS_2                           13                            152
  CLUS_3                           12                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16Q11.2) MUTATED        5     15     10
  AMP PEAK 18(16Q11.2) WILD-TYPE    141    156    164
D18V3, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            5                            141
  CLUS_2                           15                            156
  CLUS_3                           10                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16Q11.2) MUTATED        5     18      7
  AMP PEAK 18(16Q11.2) WILD-TYPE    166    187    108
D18V4, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            5                            166
  CLUS_2                           18                            187
  CLUS_3                            7                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16Q11.2) MUTATED        2      9     18
  AMP PEAK 18(16Q11.2) WILD-TYPE    156    138    165
D18V5, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            2                            156
  CLUS_2                            9                            138
  CLUS_3                           18                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(16Q11.2) MUTATED        1      5      4     15      4
  AMP PEAK 18(16Q11.2) WILD-TYPE    146     93     55    113     52
D18V6, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            1                            146
  CLUS_2                            5                             93
  CLUS_3                            4                             55
  CLUS_4                           15                            113
  CLUS_5                            4                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16Q11.2) MUTATED        1      9      1      8
  AMP PEAK 18(16Q11.2) WILD-TYPE     61     97     59     82
D18V7, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            1                             61
  CLUS_2                            9                             97
  CLUS_3                            1                             59
  CLUS_4                            8                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(16Q11.2) MUTATED        1      2      3      5      1      7
  AMP PEAK 18(16Q11.2) WILD-TYPE     69     39     37     77     24     53
D18V8, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            1                             69
  CLUS_2                            2                             39
  CLUS_3                            3                             37
  CLUS_4                            5                             77
  CLUS_5                            1                             24
  CLUS_6                            7                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q23.2) MUTATED        6     19      0
  AMP PEAK 19(17Q23.2) WILD-TYPE    267    115     85
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q23.2) MUTATED AMP PEAK 19(17Q23.2) WILD-TYPE
  CLUS_1                            6                            267
  CLUS_2                           19                            115
  CLUS_3                            0                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q23.2) MUTATED        7     10      8
  AMP PEAK 19(17Q23.2) WILD-TYPE    153    155    159
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q23.2) MUTATED AMP PEAK 19(17Q23.2) WILD-TYPE
  CLUS_1                            7                            153
  CLUS_2                           10                            155
  CLUS_3                            8                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q23.2) MUTATED        3      9     13
  AMP PEAK 19(17Q23.2) WILD-TYPE    143    162    161
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q23.2) MUTATED AMP PEAK 19(17Q23.2) WILD-TYPE
  CLUS_1                            3                            143
  CLUS_2                            9                            162
  CLUS_3                           13                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q23.2) MUTATED        5     12      8
  AMP PEAK 19(17Q23.2) WILD-TYPE    166    193    107
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q23.2) MUTATED AMP PEAK 19(17Q23.2) WILD-TYPE
  CLUS_1                            5                            166
  CLUS_2                           12                            193
  CLUS_3                            8                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q23.2) MUTATED        9      5     11
  AMP PEAK 19(17Q23.2) WILD-TYPE    149    142    172
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q23.2) MUTATED AMP PEAK 19(17Q23.2) WILD-TYPE
  CLUS_1                            9                            149
  CLUS_2                            5                            142
  CLUS_3                           11                            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q23.2) MUTATED        4      4      7     10      0
  AMP PEAK 19(17Q23.2) WILD-TYPE    143     94     52    118     56
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q23.2) MUTATED AMP PEAK 19(17Q23.2) WILD-TYPE
  CLUS_1                            4                            143
  CLUS_2                            4                             94
  CLUS_3                            7                             52
  CLUS_4                           10                            118
  CLUS_5                            0                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q23.2) MUTATED        1      8      2      5
  AMP PEAK 19(17Q23.2) WILD-TYPE     61     98     58     85
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q23.2) MUTATED AMP PEAK 19(17Q23.2) WILD-TYPE
  CLUS_1                            1                             61
  CLUS_2                            8                             98
  CLUS_3                            2                             58
  CLUS_4                            5                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q23.2) MUTATED        3      0      6      4      1      2
  AMP PEAK 19(17Q23.2) WILD-TYPE     67     41     34     78     24     58
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q23.2) MUTATED AMP PEAK 19(17Q23.2) WILD-TYPE
  CLUS_1                            3                             67
  CLUS_2                            0                             41
  CLUS_3                            6                             34
  CLUS_4                            4                             78
  CLUS_5                            1                             24
  CLUS_6                            2                             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19Q13.43) MUTATED        0     19      0
  AMP PEAK 20(19Q13.43) WILD-TYPE    273    115     85
D20V1, multiclass
        clus
vv       AMP PEAK 20(19Q13.43) MUTATED AMP PEAK 20(19Q13.43) WILD-TYPE
  CLUS_1                             0                             273
  CLUS_2                            19                             115
  CLUS_3                             0                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19Q13.43) MUTATED        2     11      6
  AMP PEAK 20(19Q13.43) WILD-TYPE    158    154    161
D20V2, multiclass
        clus
vv       AMP PEAK 20(19Q13.43) MUTATED AMP PEAK 20(19Q13.43) WILD-TYPE
  CLUS_1                             2                             158
  CLUS_2                            11                             154
  CLUS_3                             6                             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19Q13.43) MUTATED        0     11      8
  AMP PEAK 20(19Q13.43) WILD-TYPE    146    160    166
D20V3, multiclass
        clus
vv       AMP PEAK 20(19Q13.43) MUTATED AMP PEAK 20(19Q13.43) WILD-TYPE
  CLUS_1                             0                             146
  CLUS_2                            11                             160
  CLUS_3                             8                             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19Q13.43) MUTATED        2     13      4
  AMP PEAK 20(19Q13.43) WILD-TYPE    169    192    111
D20V4, multiclass
        clus
vv       AMP PEAK 20(19Q13.43) MUTATED AMP PEAK 20(19Q13.43) WILD-TYPE
  CLUS_1                             2                             169
  CLUS_2                            13                             192
  CLUS_3                             4                             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19Q13.43) MUTATED        1      5     13
  AMP PEAK 20(19Q13.43) WILD-TYPE    157    142    170
D20V5, multiclass
        clus
vv       AMP PEAK 20(19Q13.43) MUTATED AMP PEAK 20(19Q13.43) WILD-TYPE
  CLUS_1                             1                             157
  CLUS_2                             5                             142
  CLUS_3                            13                             170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(19Q13.43) MUTATED        0      5      1     11      2
  AMP PEAK 20(19Q13.43) WILD-TYPE    147     93     58    117     54
D20V6, multiclass
        clus
vv       AMP PEAK 20(19Q13.43) MUTATED AMP PEAK 20(19Q13.43) WILD-TYPE
  CLUS_1                             0                             147
  CLUS_2                             5                              93
  CLUS_3                             1                              58
  CLUS_4                            11                             117
  CLUS_5                             2                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19Q13.43) MUTATED        0      6      1      5
  AMP PEAK 20(19Q13.43) WILD-TYPE     62    100     59     85
D20V7, multiclass
        clus
vv       AMP PEAK 20(19Q13.43) MUTATED AMP PEAK 20(19Q13.43) WILD-TYPE
  CLUS_1                             0                              62
  CLUS_2                             6                             100
  CLUS_3                             1                              59
  CLUS_4                             5                              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19Q13.43) MUTATED        0      0      5      5      0      2
  AMP PEAK 20(19Q13.43) WILD-TYPE     70     41     35     77     25     58
D20V8, multiclass
        clus
vv       AMP PEAK 20(19Q13.43) MUTATED AMP PEAK 20(19Q13.43) WILD-TYPE
  CLUS_1                             0                              70
  CLUS_2                             0                              41
  CLUS_3                             5                              35
  CLUS_4                             5                              77
  CLUS_5                             0                              25
  CLUS_6                             2                              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q13.2) MUTATED        5     37      3
  AMP PEAK 21(20Q13.2) WILD-TYPE    268     97     82
D21V1, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                            5                            268
  CLUS_2                           37                             97
  CLUS_3                            3                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q13.2) MUTATED        5     28     12
  AMP PEAK 21(20Q13.2) WILD-TYPE    155    137    155
D21V2, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                            5                            155
  CLUS_2                           28                            137
  CLUS_3                           12                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q13.2) MUTATED        4     23     18
  AMP PEAK 21(20Q13.2) WILD-TYPE    142    148    156
D21V3, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                            4                            142
  CLUS_2                           23                            148
  CLUS_3                           18                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q13.2) MUTATED        7     30      8
  AMP PEAK 21(20Q13.2) WILD-TYPE    164    175    107
D21V4, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                            7                            164
  CLUS_2                           30                            175
  CLUS_3                            8                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q13.2) MUTATED        5     12     28
  AMP PEAK 21(20Q13.2) WILD-TYPE    153    135    155
D21V5, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                            5                            153
  CLUS_2                           12                            135
  CLUS_3                           28                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20Q13.2) MUTATED        5     13      1     23      3
  AMP PEAK 21(20Q13.2) WILD-TYPE    142     85     58    105     53
D21V6, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                            5                            142
  CLUS_2                           13                             85
  CLUS_3                            1                             58
  CLUS_4                           23                            105
  CLUS_5                            3                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q13.2) MUTATED        2     14      4      7
  AMP PEAK 21(20Q13.2) WILD-TYPE     60     92     56     83
D21V7, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                            2                             60
  CLUS_2                           14                             92
  CLUS_3                            4                             56
  CLUS_4                            7                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(20Q13.2) MUTATED        1      1     12      5      2      6
  AMP PEAK 21(20Q13.2) WILD-TYPE     69     40     28     77     23     54
D21V8, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                            1                             69
  CLUS_2                            1                             40
  CLUS_3                           12                             28
  CLUS_4                            5                             77
  CLUS_5                            2                             23
  CLUS_6                            6                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(XP22.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        5     19      2
  AMP PEAK 22(XP22.11) WILD-TYPE    268    115     83
D22V1, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            5                            268
  CLUS_2                           19                            115
  CLUS_3                            2                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        4     11     11
  AMP PEAK 22(XP22.11) WILD-TYPE    156    154    156
D22V2, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            4                            156
  CLUS_2                           11                            154
  CLUS_3                           11                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        3     12     11
  AMP PEAK 22(XP22.11) WILD-TYPE    143    159    163
D22V3, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            3                            143
  CLUS_2                           12                            159
  CLUS_3                           11                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        4     16      6
  AMP PEAK 22(XP22.11) WILD-TYPE    167    189    109
D22V4, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            4                            167
  CLUS_2                           16                            189
  CLUS_3                            6                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        5      4     17
  AMP PEAK 22(XP22.11) WILD-TYPE    153    143    166
D22V5, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            5                            153
  CLUS_2                            4                            143
  CLUS_3                           17                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(XP22.11) MUTATED        1      6      3     13      3
  AMP PEAK 22(XP22.11) WILD-TYPE    146     92     56    115     53
D22V6, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            1                            146
  CLUS_2                            6                             92
  CLUS_3                            3                             56
  CLUS_4                           13                            115
  CLUS_5                            3                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(XP22.11) MUTATED        0     10      2      5
  AMP PEAK 22(XP22.11) WILD-TYPE     62     96     58     85
D22V7, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            0                             62
  CLUS_2                           10                             96
  CLUS_3                            2                             58
  CLUS_4                            5                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(XP22.11) MUTATED        1      2      3      7      0      4
  AMP PEAK 22(XP22.11) WILD-TYPE     69     39     37     75     25     56
D22V8, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            1                             69
  CLUS_2                            2                             39
  CLUS_3                            3                             37
  CLUS_4                            7                             75
  CLUS_5                            0                             25
  CLUS_6                            4                             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(XP22.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP22.11) MUTATED        5     18      2
  AMP PEAK 23(XP22.11) WILD-TYPE    268    116     83
D23V1, multiclass
        clus
vv       AMP PEAK 23(XP22.11) MUTATED AMP PEAK 23(XP22.11) WILD-TYPE
  CLUS_1                            5                            268
  CLUS_2                           18                            116
  CLUS_3                            2                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP22.11) MUTATED        5     11      9
  AMP PEAK 23(XP22.11) WILD-TYPE    155    154    158
D23V2, multiclass
        clus
vv       AMP PEAK 23(XP22.11) MUTATED AMP PEAK 23(XP22.11) WILD-TYPE
  CLUS_1                            5                            155
  CLUS_2                           11                            154
  CLUS_3                            9                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP22.11) MUTATED        2     12     11
  AMP PEAK 23(XP22.11) WILD-TYPE    144    159    163
D23V3, multiclass
        clus
vv       AMP PEAK 23(XP22.11) MUTATED AMP PEAK 23(XP22.11) WILD-TYPE
  CLUS_1                            2                            144
  CLUS_2                           12                            159
  CLUS_3                           11                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP22.11) MUTATED        3     17      5
  AMP PEAK 23(XP22.11) WILD-TYPE    168    188    110
D23V4, multiclass
        clus
vv       AMP PEAK 23(XP22.11) MUTATED AMP PEAK 23(XP22.11) WILD-TYPE
  CLUS_1                            3                            168
  CLUS_2                           17                            188
  CLUS_3                            5                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP22.11) MUTATED        4      4     17
  AMP PEAK 23(XP22.11) WILD-TYPE    154    143    166
D23V5, multiclass
        clus
vv       AMP PEAK 23(XP22.11) MUTATED AMP PEAK 23(XP22.11) WILD-TYPE
  CLUS_1                            4                            154
  CLUS_2                            4                            143
  CLUS_3                           17                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(XP22.11) MUTATED        2      8      2     12      1
  AMP PEAK 23(XP22.11) WILD-TYPE    145     90     57    116     55
D23V6, multiclass
        clus
vv       AMP PEAK 23(XP22.11) MUTATED AMP PEAK 23(XP22.11) WILD-TYPE
  CLUS_1                            2                            145
  CLUS_2                            8                             90
  CLUS_3                            2                             57
  CLUS_4                           12                            116
  CLUS_5                            1                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(XP22.11) MUTATED        2     10      2      1
  AMP PEAK 23(XP22.11) WILD-TYPE     60     96     58     89
D23V7, multiclass
        clus
vv       AMP PEAK 23(XP22.11) MUTATED AMP PEAK 23(XP22.11) WILD-TYPE
  CLUS_1                            2                             60
  CLUS_2                           10                             96
  CLUS_3                            2                             58
  CLUS_4                            1                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(XP22.11) MUTATED        1      2      2      7      2      1
  AMP PEAK 23(XP22.11) WILD-TYPE     69     39     38     75     23     59
D23V8, multiclass
        clus
vv       AMP PEAK 23(XP22.11) MUTATED AMP PEAK 23(XP22.11) WILD-TYPE
  CLUS_1                            1                             69
  CLUS_2                            2                             39
  CLUS_3                            2                             38
  CLUS_4                            7                             75
  CLUS_5                            2                             23
  CLUS_6                            1                             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.1) MUTATED        4     17      2
  AMP PEAK 24(XP21.1) WILD-TYPE    269    117     83
D24V1, multiclass
        clus
vv       AMP PEAK 24(XP21.1) MUTATED AMP PEAK 24(XP21.1) WILD-TYPE
  CLUS_1                           4                           269
  CLUS_2                          17                           117
  CLUS_3                           2                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.1) MUTATED        2     11     10
  AMP PEAK 24(XP21.1) WILD-TYPE    158    154    157
D24V2, multiclass
        clus
vv       AMP PEAK 24(XP21.1) MUTATED AMP PEAK 24(XP21.1) WILD-TYPE
  CLUS_1                           2                           158
  CLUS_2                          11                           154
  CLUS_3                          10                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.1) MUTATED        2     12      9
  AMP PEAK 24(XP21.1) WILD-TYPE    144    159    165
D24V3, multiclass
        clus
vv       AMP PEAK 24(XP21.1) MUTATED AMP PEAK 24(XP21.1) WILD-TYPE
  CLUS_1                           2                           144
  CLUS_2                          12                           159
  CLUS_3                           9                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.1) MUTATED        4     14      5
  AMP PEAK 24(XP21.1) WILD-TYPE    167    191    110
D24V4, multiclass
        clus
vv       AMP PEAK 24(XP21.1) MUTATED AMP PEAK 24(XP21.1) WILD-TYPE
  CLUS_1                           4                           167
  CLUS_2                          14                           191
  CLUS_3                           5                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.1) MUTATED        5      3     15
  AMP PEAK 24(XP21.1) WILD-TYPE    153    144    168
D24V5, multiclass
        clus
vv       AMP PEAK 24(XP21.1) MUTATED AMP PEAK 24(XP21.1) WILD-TYPE
  CLUS_1                           5                           153
  CLUS_2                           3                           144
  CLUS_3                          15                           168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(XP21.1) MUTATED        3      8      1     11      0
  AMP PEAK 24(XP21.1) WILD-TYPE    144     90     58    117     56
D24V6, multiclass
        clus
vv       AMP PEAK 24(XP21.1) MUTATED AMP PEAK 24(XP21.1) WILD-TYPE
  CLUS_1                           3                           144
  CLUS_2                           8                            90
  CLUS_3                           1                            58
  CLUS_4                          11                           117
  CLUS_5                           0                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP21.1) MUTATED        0      8      2      0
  AMP PEAK 24(XP21.1) WILD-TYPE     62     98     58     90
D24V7, multiclass
        clus
vv       AMP PEAK 24(XP21.1) MUTATED AMP PEAK 24(XP21.1) WILD-TYPE
  CLUS_1                           0                            62
  CLUS_2                           8                            98
  CLUS_3                           2                            58
  CLUS_4                           0                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP21.1) MUTATED        1      2      1      6      0      0
  AMP PEAK 24(XP21.1) WILD-TYPE     69     39     39     76     25     60
D24V8, multiclass
        clus
vv       AMP PEAK 24(XP21.1) MUTATED AMP PEAK 24(XP21.1) WILD-TYPE
  CLUS_1                           1                            69
  CLUS_2                           2                            39
  CLUS_3                           1                            39
  CLUS_4                           6                            76
  CLUS_5                           0                            25
  CLUS_6                           0                            60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        3     11      2
  AMP PEAK 25(XQ21.1) WILD-TYPE    270    123     83
D25V1, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           3                           270
  CLUS_2                          11                           123
  CLUS_3                           2                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        1      9      6
  AMP PEAK 25(XQ21.1) WILD-TYPE    159    156    161
D25V2, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           1                           159
  CLUS_2                           9                           156
  CLUS_3                           6                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        0      9      7
  AMP PEAK 25(XQ21.1) WILD-TYPE    146    162    167
D25V3, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           0                           146
  CLUS_2                           9                           162
  CLUS_3                           7                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        1     11      4
  AMP PEAK 25(XQ21.1) WILD-TYPE    170    194    111
D25V4, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           1                           170
  CLUS_2                          11                           194
  CLUS_3                           4                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        3      4      9
  AMP PEAK 25(XQ21.1) WILD-TYPE    155    143    174
D25V5, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           3                           155
  CLUS_2                           4                           143
  CLUS_3                           9                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(XQ21.1) MUTATED        3      6      1      5      1
  AMP PEAK 25(XQ21.1) WILD-TYPE    144     92     58    123     55
D25V6, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           3                           144
  CLUS_2                           6                            92
  CLUS_3                           1                            58
  CLUS_4                           5                           123
  CLUS_5                           1                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ21.1) MUTATED        1      4      0      1
  AMP PEAK 25(XQ21.1) WILD-TYPE     61    102     60     89
D25V7, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           1                            61
  CLUS_2                           4                           102
  CLUS_3                           0                            60
  CLUS_4                           1                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ21.1) MUTATED        1      2      0      2      1      0
  AMP PEAK 25(XQ21.1) WILD-TYPE     69     39     40     80     24     60
D25V8, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           1                            69
  CLUS_2                           2                            39
  CLUS_3                           0                            40
  CLUS_4                           2                            80
  CLUS_5                           1                            24
  CLUS_6                           0                            60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.1) MUTATED        2      9      3
  AMP PEAK 26(XQ21.1) WILD-TYPE    271    125     82
D26V1, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           2                           271
  CLUS_2                           9                           125
  CLUS_3                           3                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.1) MUTATED        2     10      2
  AMP PEAK 26(XQ21.1) WILD-TYPE    158    155    165
D26V2, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           2                           158
  CLUS_2                          10                           155
  CLUS_3                           2                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.1) MUTATED        2      8      4
  AMP PEAK 26(XQ21.1) WILD-TYPE    144    163    170
D26V3, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           2                           144
  CLUS_2                           8                           163
  CLUS_3                           4                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.1) MUTATED        1     12      1
  AMP PEAK 26(XQ21.1) WILD-TYPE    170    193    114
D26V4, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           1                           170
  CLUS_2                          12                           193
  CLUS_3                           1                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.1) MUTATED        1      4      9
  AMP PEAK 26(XQ21.1) WILD-TYPE    157    143    174
D26V5, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           1                           157
  CLUS_2                           4                           143
  CLUS_3                           9                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(XQ21.1) MUTATED        2      5      0      5      2
  AMP PEAK 26(XQ21.1) WILD-TYPE    145     93     59    123     54
D26V6, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           2                           145
  CLUS_2                           5                            93
  CLUS_3                           0                            59
  CLUS_4                           5                           123
  CLUS_5                           2                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(XQ21.1) MUTATED        0      4      0      2
  AMP PEAK 26(XQ21.1) WILD-TYPE     62    102     60     88
D26V7, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           0                            62
  CLUS_2                           4                           102
  CLUS_3                           0                            60
  CLUS_4                           2                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(XQ21.1) MUTATED        1      2      0      2      0      1
  AMP PEAK 26(XQ21.1) WILD-TYPE     69     39     40     80     25     59
D26V8, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           1                            69
  CLUS_2                           2                            39
  CLUS_3                           0                            40
  CLUS_4                           2                            80
  CLUS_5                           0                            25
  CLUS_6                           1                            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(XQ25) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        4     11      4
  AMP PEAK 27(XQ25) WILD-TYPE    269    123     81
D27V1, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         4                         269
  CLUS_2                        11                         123
  CLUS_3                         4                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        2     12      5
  AMP PEAK 27(XQ25) WILD-TYPE    158    153    162
D27V2, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         2                         158
  CLUS_2                        12                         153
  CLUS_3                         5                         162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        3     11      5
  AMP PEAK 27(XQ25) WILD-TYPE    143    160    169
D27V3, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         3                         143
  CLUS_2                        11                         160
  CLUS_3                         5                         169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        3     14      2
  AMP PEAK 27(XQ25) WILD-TYPE    168    191    113
D27V4, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         3                         168
  CLUS_2                        14                         191
  CLUS_3                         2                         113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        4      4     11
  AMP PEAK 27(XQ25) WILD-TYPE    154    143    172
D27V5, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         4                         154
  CLUS_2                         4                         143
  CLUS_3                        11                         172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(XQ25) MUTATED        4      6      0      8      1
  AMP PEAK 27(XQ25) WILD-TYPE    143     92     59    120     55
D27V6, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         4                         143
  CLUS_2                         6                          92
  CLUS_3                         0                          59
  CLUS_4                         8                         120
  CLUS_5                         1                          55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ25) MUTATED        2      5      1      2
  AMP PEAK 27(XQ25) WILD-TYPE     60    101     59     88
D27V7, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         2                          60
  CLUS_2                         5                         101
  CLUS_3                         1                          59
  CLUS_4                         2                          88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(XQ25) MUTATED        1      3      1      3      2      0
  AMP PEAK 27(XQ25) WILD-TYPE     69     38     39     79     23     60
D27V8, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         1                          69
  CLUS_2                         3                          38
  CLUS_3                         1                          39
  CLUS_4                         3                          79
  CLUS_5                         2                          23
  CLUS_6                         0                          60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(XQ27.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ27.1) MUTATED        4     10      5
  AMP PEAK 28(XQ27.1) WILD-TYPE    269    124     80
D28V1, multiclass
        clus
vv       AMP PEAK 28(XQ27.1) MUTATED AMP PEAK 28(XQ27.1) WILD-TYPE
  CLUS_1                           4                           269
  CLUS_2                          10                           124
  CLUS_3                           5                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ27.1) MUTATED        2     11      6
  AMP PEAK 28(XQ27.1) WILD-TYPE    158    154    161
D28V2, multiclass
        clus
vv       AMP PEAK 28(XQ27.1) MUTATED AMP PEAK 28(XQ27.1) WILD-TYPE
  CLUS_1                           2                           158
  CLUS_2                          11                           154
  CLUS_3                           6                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ27.1) MUTATED        2     10      7
  AMP PEAK 28(XQ27.1) WILD-TYPE    144    161    167
D28V3, multiclass
        clus
vv       AMP PEAK 28(XQ27.1) MUTATED AMP PEAK 28(XQ27.1) WILD-TYPE
  CLUS_1                           2                           144
  CLUS_2                          10                           161
  CLUS_3                           7                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ27.1) MUTATED        3     12      4
  AMP PEAK 28(XQ27.1) WILD-TYPE    168    193    111
D28V4, multiclass
        clus
vv       AMP PEAK 28(XQ27.1) MUTATED AMP PEAK 28(XQ27.1) WILD-TYPE
  CLUS_1                           3                           168
  CLUS_2                          12                           193
  CLUS_3                           4                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ27.1) MUTATED        0     10      9
  AMP PEAK 28(XQ27.1) WILD-TYPE    158    137    174
D28V5, multiclass
        clus
vv       AMP PEAK 28(XQ27.1) MUTATED AMP PEAK 28(XQ27.1) WILD-TYPE
  CLUS_1                           0                           158
  CLUS_2                          10                           137
  CLUS_3                           9                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(XQ27.1) MUTATED        0      7      0      6      6
  AMP PEAK 28(XQ27.1) WILD-TYPE    147     91     59    122     50
D28V6, multiclass
        clus
vv       AMP PEAK 28(XQ27.1) MUTATED AMP PEAK 28(XQ27.1) WILD-TYPE
  CLUS_1                           0                           147
  CLUS_2                           7                            91
  CLUS_3                           0                            59
  CLUS_4                           6                           122
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ27.1) MUTATED        0      4      1      8
  AMP PEAK 28(XQ27.1) WILD-TYPE     62    102     59     82
D28V7, multiclass
        clus
vv       AMP PEAK 28(XQ27.1) MUTATED AMP PEAK 28(XQ27.1) WILD-TYPE
  CLUS_1                           0                            62
  CLUS_2                           4                           102
  CLUS_3                           1                            59
  CLUS_4                           8                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(XQ27.1) MUTATED        1      4      1      2      0      5
  AMP PEAK 28(XQ27.1) WILD-TYPE     69     37     39     80     25     55
D28V8, multiclass
        clus
vv       AMP PEAK 28(XQ27.1) MUTATED AMP PEAK 28(XQ27.1) WILD-TYPE
  CLUS_1                           1                            69
  CLUS_2                           4                            37
  CLUS_3                           1                            39
  CLUS_4                           2                            80
  CLUS_5                           0                            25
  CLUS_6                           5                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  1(1P31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED       17     39      4
  DEL PEAK  1(1P31.3) WILD-TYPE    256     95     81
D29V1, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          17                           256
  CLUS_2                          39                            95
  CLUS_3                           4                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED        3     19     38
  DEL PEAK  1(1P31.3) WILD-TYPE    157    146    129
D29V2, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           3                           157
  CLUS_2                          19                           146
  CLUS_3                          38                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED        3     18     39
  DEL PEAK  1(1P31.3) WILD-TYPE    143    153    135
D29V3, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           3                           143
  CLUS_2                          18                           153
  CLUS_3                          39                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED        5     26     29
  DEL PEAK  1(1P31.3) WILD-TYPE    166    179     86
D29V4, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           5                           166
  CLUS_2                          26                           179
  CLUS_3                          29                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED        9     17     33
  DEL PEAK  1(1P31.3) WILD-TYPE    149    130    150
D29V5, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           9                           149
  CLUS_2                          17                           130
  CLUS_3                          33                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P31.3) MUTATED       11     11      8     22      7
  DEL PEAK  1(1P31.3) WILD-TYPE    136     87     51    106     49
D29V6, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          11                           136
  CLUS_2                          11                            87
  CLUS_3                           8                            51
  CLUS_4                          22                           106
  CLUS_5                           7                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P31.3) MUTATED        3     25      6     12
  DEL PEAK  1(1P31.3) WILD-TYPE     59     81     54     78
D29V7, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           3                            59
  CLUS_2                          25                            81
  CLUS_3                           6                            54
  CLUS_4                          12                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P31.3) MUTATED        2      4     11     18      2      9
  DEL PEAK  1(1P31.3) WILD-TYPE     68     37     29     64     23     51
D29V8, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           2                            68
  CLUS_2                           4                            37
  CLUS_3                          11                            29
  CLUS_4                          18                            64
  CLUS_5                           2                            23
  CLUS_6                           9                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       11     38      9
  DEL PEAK  2(1P22.1) WILD-TYPE    262     96     76
D30V1, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          11                           262
  CLUS_2                          38                            96
  CLUS_3                           9                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED        4     29     25
  DEL PEAK  2(1P22.1) WILD-TYPE    156    136    142
D30V2, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           4                           156
  CLUS_2                          29                           136
  CLUS_3                          25                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED        6     24     28
  DEL PEAK  2(1P22.1) WILD-TYPE    140    147    146
D30V3, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           6                           140
  CLUS_2                          24                           147
  CLUS_3                          28                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED        7     31     20
  DEL PEAK  2(1P22.1) WILD-TYPE    164    174     95
D30V4, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           7                           164
  CLUS_2                          31                           174
  CLUS_3                          20                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       11     14     32
  DEL PEAK  2(1P22.1) WILD-TYPE    147    133    151
D30V5, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          11                           147
  CLUS_2                          14                           133
  CLUS_3                          32                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED       10      6      9     26      6
  DEL PEAK  2(1P22.1) WILD-TYPE    137     92     50    102     50
D30V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          10                           137
  CLUS_2                           6                            92
  CLUS_3                           9                            50
  CLUS_4                          26                           102
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED        3     22      4     12
  DEL PEAK  2(1P22.1) WILD-TYPE     59     84     56     78
D30V7, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           3                            59
  CLUS_2                          22                            84
  CLUS_3                           4                            56
  CLUS_4                          12                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED        4      5      9     17      0      6
  DEL PEAK  2(1P22.1) WILD-TYPE     66     36     31     65     25     54
D30V8, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           5                            36
  CLUS_3                           9                            31
  CLUS_4                          17                            65
  CLUS_5                           0                            25
  CLUS_6                           6                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  3(1Q23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q23.1) MUTATED        8     10     10
  DEL PEAK  3(1Q23.1) WILD-TYPE    265    124     75
D31V1, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           8                           265
  CLUS_2                          10                           124
  CLUS_3                          10                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q23.1) MUTATED        1     19      8
  DEL PEAK  3(1Q23.1) WILD-TYPE    159    146    159
D31V2, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           1                           159
  CLUS_2                          19                           146
  CLUS_3                           8                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q23.1) MUTATED        2     20      6
  DEL PEAK  3(1Q23.1) WILD-TYPE    144    151    168
D31V3, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           2                           144
  CLUS_2                          20                           151
  CLUS_3                           6                           168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q23.1) MUTATED        2     20      6
  DEL PEAK  3(1Q23.1) WILD-TYPE    169    185    109
D31V4, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           2                           169
  CLUS_2                          20                           185
  CLUS_3                           6                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q23.1) MUTATED        4      8     16
  DEL PEAK  3(1Q23.1) WILD-TYPE    154    139    167
D31V5, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           4                           154
  CLUS_2                           8                           139
  CLUS_3                          16                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q23.1) MUTATED        3      8      2      9      6
  DEL PEAK  3(1Q23.1) WILD-TYPE    144     90     57    119     50
D31V6, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           3                           144
  CLUS_2                           8                            90
  CLUS_3                           2                            57
  CLUS_4                           9                           119
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q23.1) MUTATED        0     12      3      5
  DEL PEAK  3(1Q23.1) WILD-TYPE     62     94     57     85
D31V7, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           0                            62
  CLUS_2                          12                            94
  CLUS_3                           3                            57
  CLUS_4                           5                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q23.1) MUTATED        2      6      3      5      0      4
  DEL PEAK  3(1Q23.1) WILD-TYPE     68     35     37     77     25     56
D31V8, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           2                            68
  CLUS_2                           6                            35
  CLUS_3                           3                            37
  CLUS_4                           5                            77
  CLUS_5                           0                            25
  CLUS_6                           4                            56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  4(1Q42.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q42.3) MUTATED       15     23      9
  DEL PEAK  4(1Q42.3) WILD-TYPE    258    111     76
D32V1, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          15                           258
  CLUS_2                          23                           111
  CLUS_3                           9                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q42.3) MUTATED        7     30     10
  DEL PEAK  4(1Q42.3) WILD-TYPE    153    135    157
D32V2, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                           7                           153
  CLUS_2                          30                           135
  CLUS_3                          10                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q42.3) MUTATED       12     21     14
  DEL PEAK  4(1Q42.3) WILD-TYPE    134    150    160
D32V3, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          12                           134
  CLUS_2                          21                           150
  CLUS_3                          14                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q42.3) MUTATED       11     27      9
  DEL PEAK  4(1Q42.3) WILD-TYPE    160    178    106
D32V4, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          11                           160
  CLUS_2                          27                           178
  CLUS_3                           9                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q42.3) MUTATED       10     13     24
  DEL PEAK  4(1Q42.3) WILD-TYPE    148    134    159
D32V5, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          10                           148
  CLUS_2                          13                           134
  CLUS_3                          24                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q42.3) MUTATED       10      6      3     21      7
  DEL PEAK  4(1Q42.3) WILD-TYPE    137     92     56    107     49
D32V6, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          10                           137
  CLUS_2                           6                            92
  CLUS_3                           3                            56
  CLUS_4                          21                           107
  CLUS_5                           7                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q42.3) MUTATED        4     13      6     10
  DEL PEAK  4(1Q42.3) WILD-TYPE     58     93     54     80
D32V7, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                           4                            58
  CLUS_2                          13                            93
  CLUS_3                           6                            54
  CLUS_4                          10                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(1Q42.3) MUTATED        3      2      6     15      1      6
  DEL PEAK  4(1Q42.3) WILD-TYPE     67     39     34     67     24     54
D32V8, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                           3                            67
  CLUS_2                           2                            39
  CLUS_3                           6                            34
  CLUS_4                          15                            67
  CLUS_5                           1                            24
  CLUS_6                           6                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  5(2P21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED       14     28      4
  DEL PEAK  5(2P21) WILD-TYPE    259    106     81
D33V1, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                        14                         259
  CLUS_2                        28                         106
  CLUS_3                         4                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        2     21     23
  DEL PEAK  5(2P21) WILD-TYPE    158    144    144
D33V2, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         2                         158
  CLUS_2                        21                         144
  CLUS_3                        23                         144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        5     13     28
  DEL PEAK  5(2P21) WILD-TYPE    141    158    146
D33V3, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         5                         141
  CLUS_2                        13                         158
  CLUS_3                        28                         146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        8     23     15
  DEL PEAK  5(2P21) WILD-TYPE    163    182    100
D33V4, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         8                         163
  CLUS_2                        23                         182
  CLUS_3                        15                         100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED       13      4     26
  DEL PEAK  5(2P21) WILD-TYPE    145    143    157
D33V5, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                        13                         145
  CLUS_2                         4                         143
  CLUS_3                        26                         157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2P21) MUTATED       11      4      4     19      5
  DEL PEAK  5(2P21) WILD-TYPE    136     94     55    109     51
D33V6, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                        11                         136
  CLUS_2                         4                          94
  CLUS_3                         4                          55
  CLUS_4                        19                         109
  CLUS_5                         5                          51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        3     15      2      4
  DEL PEAK  5(2P21) WILD-TYPE     59     91     58     86
D33V7, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         3                          59
  CLUS_2                        15                          91
  CLUS_3                         2                          58
  CLUS_4                         4                          86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2P21) MUTATED        2      0      4     12      3      3
  DEL PEAK  5(2P21) WILD-TYPE     68     41     36     70     22     57
D33V8, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         2                          68
  CLUS_2                         0                          41
  CLUS_3                         4                          36
  CLUS_4                        12                          70
  CLUS_5                         3                          22
  CLUS_6                         3                          57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  6(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED       13     49     30
  DEL PEAK  6(2Q22.1) WILD-TYPE    260     85     55
D34V1, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                          13                           260
  CLUS_2                          49                            85
  CLUS_3                          30                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED        7     64     21
  DEL PEAK  6(2Q22.1) WILD-TYPE    153    101    146
D34V2, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           7                           153
  CLUS_2                          64                           101
  CLUS_3                          21                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED       10     55     27
  DEL PEAK  6(2Q22.1) WILD-TYPE    136    116    147
D34V3, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                          10                           136
  CLUS_2                          55                           116
  CLUS_3                          27                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED       10     64     18
  DEL PEAK  6(2Q22.1) WILD-TYPE    161    141     97
D34V4, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                          10                           161
  CLUS_2                          64                           141
  CLUS_3                          18                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED       15     21     56
  DEL PEAK  6(2Q22.1) WILD-TYPE    143    126    127
D34V5, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                          15                           143
  CLUS_2                          21                           126
  CLUS_3                          56                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q22.1) MUTATED       16     20      3     39     14
  DEL PEAK  6(2Q22.1) WILD-TYPE    131     78     56     89     42
D34V6, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                          16                           131
  CLUS_2                          20                            78
  CLUS_3                           3                            56
  CLUS_4                          39                            89
  CLUS_5                          14                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q22.1) MUTATED        5     32      7     17
  DEL PEAK  6(2Q22.1) WILD-TYPE     57     74     53     73
D34V7, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           5                            57
  CLUS_2                          32                            74
  CLUS_3                           7                            53
  CLUS_4                          17                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q22.1) MUTATED        6      6     10     27      1     11
  DEL PEAK  6(2Q22.1) WILD-TYPE     64     35     30     55     24     49
D34V8, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           6                            64
  CLUS_2                           6                            35
  CLUS_3                          10                            30
  CLUS_4                          27                            55
  CLUS_5                           1                            24
  CLUS_6                          11                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  7(2Q22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.3) MUTATED       11     46     28
  DEL PEAK  7(2Q22.3) WILD-TYPE    262     88     57
D35V1, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                          11                           262
  CLUS_2                          46                            88
  CLUS_3                          28                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.3) MUTATED        8     56     21
  DEL PEAK  7(2Q22.3) WILD-TYPE    152    109    146
D35V2, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                           8                           152
  CLUS_2                          56                           109
  CLUS_3                          21                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.3) MUTATED       11     49     25
  DEL PEAK  7(2Q22.3) WILD-TYPE    135    122    149
D35V3, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                          11                           135
  CLUS_2                          49                           122
  CLUS_3                          25                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.3) MUTATED       12     56     17
  DEL PEAK  7(2Q22.3) WILD-TYPE    159    149     98
D35V4, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                          12                           159
  CLUS_2                          56                           149
  CLUS_3                          17                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.3) MUTATED       17     19     49
  DEL PEAK  7(2Q22.3) WILD-TYPE    141    128    134
D35V5, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                          17                           141
  CLUS_2                          19                           128
  CLUS_3                          49                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q22.3) MUTATED       14     15      4     36     16
  DEL PEAK  7(2Q22.3) WILD-TYPE    133     83     55     92     40
D35V6, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                          14                           133
  CLUS_2                          15                            83
  CLUS_3                           4                            55
  CLUS_4                          36                            92
  CLUS_5                          16                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.3) MUTATED        5     26      6     19
  DEL PEAK  7(2Q22.3) WILD-TYPE     57     80     54     71
D35V7, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                           5                            57
  CLUS_2                          26                            80
  CLUS_3                           6                            54
  CLUS_4                          19                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(2Q22.3) MUTATED        5      5     11     24      0     11
  DEL PEAK  7(2Q22.3) WILD-TYPE     65     36     29     58     25     49
D35V8, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                           5                            65
  CLUS_2                           5                            36
  CLUS_3                          11                            29
  CLUS_4                          24                            58
  CLUS_5                           0                            25
  CLUS_6                          11                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  8(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P13) MUTATED       58     15      5
  DEL PEAK  8(3P13) WILD-TYPE    215    119     80
D36V1, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        58                         215
  CLUS_2                        15                         119
  CLUS_3                         5                          80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P13) MUTATED       18     12     48
  DEL PEAK  8(3P13) WILD-TYPE    142    153    119
D36V2, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        18                         142
  CLUS_2                        12                         153
  CLUS_3                        48                         119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P13) MUTATED       15     12     51
  DEL PEAK  8(3P13) WILD-TYPE    131    159    123
D36V3, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        15                         131
  CLUS_2                        12                         159
  CLUS_3                        51                         123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P13) MUTATED       20     19     39
  DEL PEAK  8(3P13) WILD-TYPE    151    186     76
D36V4, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        20                         151
  CLUS_2                        19                         186
  CLUS_3                        39                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P13) MUTATED       24     18     34
  DEL PEAK  8(3P13) WILD-TYPE    134    129    149
D36V5, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        24                         134
  CLUS_2                        18                         129
  CLUS_3                        34                         149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P13) MUTATED       23     12     17     18      6
  DEL PEAK  8(3P13) WILD-TYPE    124     86     42    110     50
D36V6, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        23                         124
  CLUS_2                        12                          86
  CLUS_3                        17                          42
  CLUS_4                        18                         110
  CLUS_5                         6                          50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P13) MUTATED       13     19      6      6
  DEL PEAK  8(3P13) WILD-TYPE     49     87     54     84
D36V7, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        13                          49
  CLUS_2                        19                          87
  CLUS_3                         6                          54
  CLUS_4                         6                          84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P13) MUTATED        9      4      4     13      8      6
  DEL PEAK  8(3P13) WILD-TYPE     61     37     36     69     17     54
D36V8, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                         9                          61
  CLUS_2                         4                          37
  CLUS_3                         4                          36
  CLUS_4                        13                          69
  CLUS_5                         8                          17
  CLUS_6                         6                          54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  9(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q29) MUTATED       17     11      4
  DEL PEAK  9(3Q29) WILD-TYPE    256    123     81
D37V1, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                        17                         256
  CLUS_2                        11                         123
  CLUS_3                         4                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q29) MUTATED        8      9     15
  DEL PEAK  9(3Q29) WILD-TYPE    152    156    152
D37V2, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         8                         152
  CLUS_2                         9                         156
  CLUS_3                        15                         152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q29) MUTATED        5      9     18
  DEL PEAK  9(3Q29) WILD-TYPE    141    162    156
D37V3, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         5                         141
  CLUS_2                         9                         162
  CLUS_3                        18                         156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q29) MUTATED        9     10     13
  DEL PEAK  9(3Q29) WILD-TYPE    162    195    102
D37V4, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         9                         162
  CLUS_2                        10                         195
  CLUS_3                        13                         102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q29) MUTATED       10      6     15
  DEL PEAK  9(3Q29) WILD-TYPE    148    141    168
D37V5, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                        10                         148
  CLUS_2                         6                         141
  CLUS_3                        15                         168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3Q29) MUTATED        7      4      5     13      2
  DEL PEAK  9(3Q29) WILD-TYPE    140     94     54    115     54
D37V6, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         7                         140
  CLUS_2                         4                          94
  CLUS_3                         5                          54
  CLUS_4                        13                         115
  CLUS_5                         2                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q29) MUTATED        4      7      7      2
  DEL PEAK  9(3Q29) WILD-TYPE     58     99     53     88
D37V7, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         4                          58
  CLUS_2                         7                          99
  CLUS_3                         7                          53
  CLUS_4                         2                          88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q29) MUTATED        7      3      1      5      2      2
  DEL PEAK  9(3Q29) WILD-TYPE     63     38     39     77     23     58
D37V8, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         7                          63
  CLUS_2                         3                          38
  CLUS_3                         1                          39
  CLUS_4                         5                          77
  CLUS_5                         2                          23
  CLUS_6                         2                          58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 10(4Q28.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q28.2) MUTATED        7     30     14
  DEL PEAK 10(4Q28.2) WILD-TYPE    266    104     71
D38V1, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           7                           266
  CLUS_2                          30                           104
  CLUS_3                          14                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q28.2) MUTATED        3     35     13
  DEL PEAK 10(4Q28.2) WILD-TYPE    157    130    154
D38V2, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           3                           157
  CLUS_2                          35                           130
  CLUS_3                          13                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q28.2) MUTATED        4     35     12
  DEL PEAK 10(4Q28.2) WILD-TYPE    142    136    162
D38V3, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           4                           142
  CLUS_2                          35                           136
  CLUS_3                          12                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q28.2) MUTATED        5     37      9
  DEL PEAK 10(4Q28.2) WILD-TYPE    166    168    106
D38V4, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           5                           166
  CLUS_2                          37                           168
  CLUS_3                           9                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q28.2) MUTATED       13     11     26
  DEL PEAK 10(4Q28.2) WILD-TYPE    145    136    157
D38V5, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                          13                           145
  CLUS_2                          11                           136
  CLUS_3                          26                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q28.2) MUTATED       11      8      3     24      4
  DEL PEAK 10(4Q28.2) WILD-TYPE    136     90     56    104     52
D38V6, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                          11                           136
  CLUS_2                           8                            90
  CLUS_3                           3                            56
  CLUS_4                          24                           104
  CLUS_5                           4                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q28.2) MUTATED        0     18      5      6
  DEL PEAK 10(4Q28.2) WILD-TYPE     62     88     55     84
D38V7, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           0                            62
  CLUS_2                          18                            88
  CLUS_3                           5                            55
  CLUS_4                           6                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q28.2) MUTATED        4      2      7     13      0      3
  DEL PEAK 10(4Q28.2) WILD-TYPE     66     39     33     69     25     57
D38V8, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           2                            39
  CLUS_3                           7                            33
  CLUS_4                          13                            69
  CLUS_5                           0                            25
  CLUS_6                           3                            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 11(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q11.2) MUTATED       23     64     13
  DEL PEAK 11(5Q11.2) WILD-TYPE    250     70     72
D39V1, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          23                           250
  CLUS_2                          64                            70
  CLUS_3                          13                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q11.2) MUTATED       11     51     38
  DEL PEAK 11(5Q11.2) WILD-TYPE    149    114    129
D39V2, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          11                           149
  CLUS_2                          51                           114
  CLUS_3                          38                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q11.2) MUTATED       14     44     42
  DEL PEAK 11(5Q11.2) WILD-TYPE    132    127    132
D39V3, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          14                           132
  CLUS_2                          44                           127
  CLUS_3                          42                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q11.2) MUTATED       15     55     30
  DEL PEAK 11(5Q11.2) WILD-TYPE    156    150     85
D39V4, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          15                           156
  CLUS_2                          55                           150
  CLUS_3                          30                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q11.2) MUTATED       23     20     56
  DEL PEAK 11(5Q11.2) WILD-TYPE    135    127    127
D39V5, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          23                           135
  CLUS_2                          20                           127
  CLUS_3                          56                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q11.2) MUTATED       19      9     15     45     11
  DEL PEAK 11(5Q11.2) WILD-TYPE    128     89     44     83     45
D39V6, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          19                           128
  CLUS_2                           9                            89
  CLUS_3                          15                            44
  CLUS_4                          45                            83
  CLUS_5                          11                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q11.2) MUTATED        6     36      9     18
  DEL PEAK 11(5Q11.2) WILD-TYPE     56     70     51     72
D39V7, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                           6                            56
  CLUS_2                          36                            70
  CLUS_3                           9                            51
  CLUS_4                          18                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q11.2) MUTATED        9      4     16     28      2     10
  DEL PEAK 11(5Q11.2) WILD-TYPE     61     37     24     54     23     50
D39V8, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                           9                            61
  CLUS_2                           4                            37
  CLUS_3                          16                            24
  CLUS_4                          28                            54
  CLUS_5                           2                            23
  CLUS_6                          10                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 12(5Q13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q13.2) MUTATED       19     67     13
  DEL PEAK 12(5Q13.2) WILD-TYPE    254     67     72
D40V1, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          19                           254
  CLUS_2                          67                            67
  CLUS_3                          13                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q13.2) MUTATED       12     53     34
  DEL PEAK 12(5Q13.2) WILD-TYPE    148    112    133
D40V2, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          12                           148
  CLUS_2                          53                           112
  CLUS_3                          34                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q13.2) MUTATED       15     44     40
  DEL PEAK 12(5Q13.2) WILD-TYPE    131    127    134
D40V3, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          15                           131
  CLUS_2                          44                           127
  CLUS_3                          40                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q13.2) MUTATED       21     54     24
  DEL PEAK 12(5Q13.2) WILD-TYPE    150    151     91
D40V4, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          21                           150
  CLUS_2                          54                           151
  CLUS_3                          24                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q13.2) MUTATED       32     15     51
  DEL PEAK 12(5Q13.2) WILD-TYPE    126    132    132
D40V5, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          32                           126
  CLUS_2                          15                           132
  CLUS_3                          51                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q13.2) MUTATED       27      7     14     44      6
  DEL PEAK 12(5Q13.2) WILD-TYPE    120     91     45     84     50
D40V6, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          27                           120
  CLUS_2                           7                            91
  CLUS_3                          14                            45
  CLUS_4                          44                            84
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q13.2) MUTATED        7     34      7     16
  DEL PEAK 12(5Q13.2) WILD-TYPE     55     72     53     74
D40V7, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                           7                            55
  CLUS_2                          34                            72
  CLUS_3                           7                            53
  CLUS_4                          16                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q13.2) MUTATED       10      3     14     27      4      6
  DEL PEAK 12(5Q13.2) WILD-TYPE     60     38     26     55     21     54
D40V8, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          10                            60
  CLUS_2                           3                            38
  CLUS_3                          14                            26
  CLUS_4                          27                            55
  CLUS_5                           4                            21
  CLUS_6                           6                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 13(5Q21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.1) MUTATED       13     60     36
  DEL PEAK 13(5Q21.1) WILD-TYPE    260     74     49
D41V1, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          13                           260
  CLUS_2                          60                            74
  CLUS_3                          36                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.1) MUTATED       11     73     25
  DEL PEAK 13(5Q21.1) WILD-TYPE    149     92    142
D41V2, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          11                           149
  CLUS_2                          73                            92
  CLUS_3                          25                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.1) MUTATED       13     69     27
  DEL PEAK 13(5Q21.1) WILD-TYPE    133    102    147
D41V3, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          13                           133
  CLUS_2                          69                           102
  CLUS_3                          27                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.1) MUTATED       17     72     20
  DEL PEAK 13(5Q21.1) WILD-TYPE    154    133     95
D41V4, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          17                           154
  CLUS_2                          72                           133
  CLUS_3                          20                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.1) MUTATED       30     20     58
  DEL PEAK 13(5Q21.1) WILD-TYPE    128    127    125
D41V5, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          30                           128
  CLUS_2                          20                           127
  CLUS_3                          58                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(5Q21.1) MUTATED       26     14     14     44     10
  DEL PEAK 13(5Q21.1) WILD-TYPE    121     84     45     84     46
D41V6, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          26                           121
  CLUS_2                          14                            84
  CLUS_3                          14                            45
  CLUS_4                          44                            84
  CLUS_5                          10                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.1) MUTATED        8     28      9     22
  DEL PEAK 13(5Q21.1) WILD-TYPE     54     78     51     68
D41V7, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                           8                            54
  CLUS_2                          28                            78
  CLUS_3                           9                            51
  CLUS_4                          22                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q21.1) MUTATED        8      7     10     29      2     11
  DEL PEAK 13(5Q21.1) WILD-TYPE     62     34     30     53     23     49
D41V8, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                           8                            62
  CLUS_2                           7                            34
  CLUS_3                          10                            30
  CLUS_4                          29                            53
  CLUS_5                           2                            23
  CLUS_6                          11                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 14(6P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6P25.1) MUTATED       12     30      4
  DEL PEAK 14(6P25.1) WILD-TYPE    261    104     81
D42V1, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                          12                           261
  CLUS_2                          30                           104
  CLUS_3                           4                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6P25.1) MUTATED        8     14     24
  DEL PEAK 14(6P25.1) WILD-TYPE    152    151    143
D42V2, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           8                           152
  CLUS_2                          14                           151
  CLUS_3                          24                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6P25.1) MUTATED        6     15     25
  DEL PEAK 14(6P25.1) WILD-TYPE    140    156    149
D42V3, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           6                           140
  CLUS_2                          15                           156
  CLUS_3                          25                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6P25.1) MUTATED       10     17     19
  DEL PEAK 14(6P25.1) WILD-TYPE    161    188     96
D42V4, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                          10                           161
  CLUS_2                          17                           188
  CLUS_3                          19                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6P25.1) MUTATED       14      9     23
  DEL PEAK 14(6P25.1) WILD-TYPE    144    138    160
D42V5, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                          14                           144
  CLUS_2                           9                           138
  CLUS_3                          23                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6P25.1) MUTATED        9      5      8     19      5
  DEL PEAK 14(6P25.1) WILD-TYPE    138     93     51    109     51
D42V6, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           9                           138
  CLUS_2                           5                            93
  CLUS_3                           8                            51
  CLUS_4                          19                           109
  CLUS_5                           5                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6P25.1) MUTATED        3     14      6      9
  DEL PEAK 14(6P25.1) WILD-TYPE     59     92     54     81
D42V7, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           3                            59
  CLUS_2                          14                            92
  CLUS_3                           6                            54
  CLUS_4                           9                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(6P25.1) MUTATED        3      1      9     12      2      5
  DEL PEAK 14(6P25.1) WILD-TYPE     67     40     31     70     23     55
D42V8, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           3                            67
  CLUS_2                           1                            40
  CLUS_3                           9                            31
  CLUS_4                          12                            70
  CLUS_5                           2                            23
  CLUS_6                           5                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 15(6Q14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6Q14.3) MUTATED       50     76     54
  DEL PEAK 15(6Q14.3) WILD-TYPE    223     58     31
D43V1, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          50                           223
  CLUS_2                          76                            58
  CLUS_3                          54                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6Q14.3) MUTATED       24    118     38
  DEL PEAK 15(6Q14.3) WILD-TYPE    136     47    129
D43V2, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          24                           136
  CLUS_2                         118                            47
  CLUS_3                          38                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6Q14.3) MUTATED       31    102     47
  DEL PEAK 15(6Q14.3) WILD-TYPE    115     69    127
D43V3, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          31                           115
  CLUS_2                         102                            69
  CLUS_3                          47                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6Q14.3) MUTATED       33    117     30
  DEL PEAK 15(6Q14.3) WILD-TYPE    138     88     85
D43V4, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          33                           138
  CLUS_2                         117                            88
  CLUS_3                          30                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6Q14.3) MUTATED       43     42     94
  DEL PEAK 15(6Q14.3) WILD-TYPE    115    105     89
D43V5, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          43                           115
  CLUS_2                          42                           105
  CLUS_3                          94                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(6Q14.3) MUTATED       38     35     14     68     24
  DEL PEAK 15(6Q14.3) WILD-TYPE    109     63     45     60     32
D43V6, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          38                           109
  CLUS_2                          35                            63
  CLUS_3                          14                            45
  CLUS_4                          68                            60
  CLUS_5                          24                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6Q14.3) MUTATED       13     51     18     27
  DEL PEAK 15(6Q14.3) WILD-TYPE     49     55     42     63
D43V7, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          13                            49
  CLUS_2                          51                            55
  CLUS_3                          18                            42
  CLUS_4                          27                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6Q14.3) MUTATED       17     13     16     41      4     18
  DEL PEAK 15(6Q14.3) WILD-TYPE     53     28     24     41     21     42
D43V8, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          17                            53
  CLUS_2                          13                            28
  CLUS_3                          16                            24
  CLUS_4                          41                            41
  CLUS_5                           4                            21
  CLUS_6                          18                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 16(7Q31.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.33) MUTATED        7     18      3
  DEL PEAK 16(7Q31.33) WILD-TYPE    266    116     82
D44V1, multiclass
        clus
vv       DEL PEAK 16(7Q31.33) MUTATED DEL PEAK 16(7Q31.33) WILD-TYPE
  CLUS_1                            7                            266
  CLUS_2                           18                            116
  CLUS_3                            3                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.33) MUTATED        3     15     10
  DEL PEAK 16(7Q31.33) WILD-TYPE    157    150    157
D44V2, multiclass
        clus
vv       DEL PEAK 16(7Q31.33) MUTATED DEL PEAK 16(7Q31.33) WILD-TYPE
  CLUS_1                            3                            157
  CLUS_2                           15                            150
  CLUS_3                           10                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.33) MUTATED        0     15     13
  DEL PEAK 16(7Q31.33) WILD-TYPE    146    156    161
D44V3, multiclass
        clus
vv       DEL PEAK 16(7Q31.33) MUTATED DEL PEAK 16(7Q31.33) WILD-TYPE
  CLUS_1                            0                            146
  CLUS_2                           15                            156
  CLUS_3                           13                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.33) MUTATED        1     17     10
  DEL PEAK 16(7Q31.33) WILD-TYPE    170    188    105
D44V4, multiclass
        clus
vv       DEL PEAK 16(7Q31.33) MUTATED DEL PEAK 16(7Q31.33) WILD-TYPE
  CLUS_1                            1                            170
  CLUS_2                           17                            188
  CLUS_3                           10                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.33) MUTATED        4      4     20
  DEL PEAK 16(7Q31.33) WILD-TYPE    154    143    163
D44V5, multiclass
        clus
vv       DEL PEAK 16(7Q31.33) MUTATED DEL PEAK 16(7Q31.33) WILD-TYPE
  CLUS_1                            4                            154
  CLUS_2                            4                            143
  CLUS_3                           20                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(7Q31.33) MUTATED        4      1      2     18      3
  DEL PEAK 16(7Q31.33) WILD-TYPE    143     97     57    110     53
D44V6, multiclass
        clus
vv       DEL PEAK 16(7Q31.33) MUTATED DEL PEAK 16(7Q31.33) WILD-TYPE
  CLUS_1                            4                            143
  CLUS_2                            1                             97
  CLUS_3                            2                             57
  CLUS_4                           18                            110
  CLUS_5                            3                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.33) MUTATED        2      7      2      5
  DEL PEAK 16(7Q31.33) WILD-TYPE     60     99     58     85
D44V7, multiclass
        clus
vv       DEL PEAK 16(7Q31.33) MUTATED DEL PEAK 16(7Q31.33) WILD-TYPE
  CLUS_1                            2                             60
  CLUS_2                            7                             99
  CLUS_3                            2                             58
  CLUS_4                            5                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(7Q31.33) MUTATED        3      0      5      7      0      1
  DEL PEAK 16(7Q31.33) WILD-TYPE     67     41     35     75     25     59
D44V8, multiclass
        clus
vv       DEL PEAK 16(7Q31.33) MUTATED DEL PEAK 16(7Q31.33) WILD-TYPE
  CLUS_1                            3                             67
  CLUS_2                            0                             41
  CLUS_3                            5                             35
  CLUS_4                            7                             75
  CLUS_5                            0                             25
  CLUS_6                            1                             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 17(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.2) MUTATED      123     90     11
  DEL PEAK 17(8P23.2) WILD-TYPE    150     44     74
D45V1, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                         123                           150
  CLUS_2                          90                            44
  CLUS_3                          11                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.2) MUTATED       43     80    101
  DEL PEAK 17(8P23.2) WILD-TYPE    117     85     66
D45V2, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          43                           117
  CLUS_2                          80                            85
  CLUS_3                         101                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.2) MUTATED       46     75    103
  DEL PEAK 17(8P23.2) WILD-TYPE    100     96     71
D45V3, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          46                           100
  CLUS_2                          75                            96
  CLUS_3                         103                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.2) MUTATED       52    101     71
  DEL PEAK 17(8P23.2) WILD-TYPE    119    104     44
D45V4, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          52                           119
  CLUS_2                         101                           104
  CLUS_3                          71                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.2) MUTATED       61     56    105
  DEL PEAK 17(8P23.2) WILD-TYPE     97     91     78
D45V5, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          61                            97
  CLUS_2                          56                            91
  CLUS_3                         105                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(8P23.2) MUTATED       53     34     31     75     29
  DEL PEAK 17(8P23.2) WILD-TYPE     94     64     28     53     27
D45V6, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          53                            94
  CLUS_2                          34                            64
  CLUS_3                          31                            28
  CLUS_4                          75                            53
  CLUS_5                          29                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(8P23.2) MUTATED       17     51     22     42
  DEL PEAK 17(8P23.2) WILD-TYPE     45     55     38     48
D45V7, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          17                            45
  CLUS_2                          51                            55
  CLUS_3                          22                            38
  CLUS_4                          42                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(8P23.2) MUTATED       22     11     25     39      6     29
  DEL PEAK 17(8P23.2) WILD-TYPE     48     30     15     43     19     31
D45V8, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          11                            30
  CLUS_3                          25                            15
  CLUS_4                          39                            43
  CLUS_5                           6                            19
  CLUS_6                          29                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 18(8P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P21.3) MUTATED      161    107     26
  DEL PEAK 18(8P21.3) WILD-TYPE    112     27     59
D46V1, multiclass
        clus
vv       DEL PEAK 18(8P21.3) MUTATED DEL PEAK 18(8P21.3) WILD-TYPE
  CLUS_1                         161                           112
  CLUS_2                         107                            27
  CLUS_3                          26                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P21.3) MUTATED       60    106    128
  DEL PEAK 18(8P21.3) WILD-TYPE    100     59     39
D46V2, multiclass
        clus
vv       DEL PEAK 18(8P21.3) MUTATED DEL PEAK 18(8P21.3) WILD-TYPE
  CLUS_1                          60                           100
  CLUS_2                         106                            59
  CLUS_3                         128                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P21.3) MUTATED       62     97    135
  DEL PEAK 18(8P21.3) WILD-TYPE     84     74     39
D46V3, multiclass
        clus
vv       DEL PEAK 18(8P21.3) MUTATED DEL PEAK 18(8P21.3) WILD-TYPE
  CLUS_1                          62                            84
  CLUS_2                          97                            74
  CLUS_3                         135                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P21.3) MUTATED       77    128     89
  DEL PEAK 18(8P21.3) WILD-TYPE     94     77     26
D46V4, multiclass
        clus
vv       DEL PEAK 18(8P21.3) MUTATED DEL PEAK 18(8P21.3) WILD-TYPE
  CLUS_1                          77                            94
  CLUS_2                         128                            77
  CLUS_3                          89                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P21.3) MUTATED       81     77    134
  DEL PEAK 18(8P21.3) WILD-TYPE     77     70     49
D46V5, multiclass
        clus
vv       DEL PEAK 18(8P21.3) MUTATED DEL PEAK 18(8P21.3) WILD-TYPE
  CLUS_1                          81                            77
  CLUS_2                          77                            70
  CLUS_3                         134                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P21.3) MUTATED       67     50     42     97     36
  DEL PEAK 18(8P21.3) WILD-TYPE     80     48     17     31     20
D46V6, multiclass
        clus
vv       DEL PEAK 18(8P21.3) MUTATED DEL PEAK 18(8P21.3) WILD-TYPE
  CLUS_1                          67                            80
  CLUS_2                          50                            48
  CLUS_3                          42                            17
  CLUS_4                          97                            31
  CLUS_5                          36                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P21.3) MUTATED       26     69     28     55
  DEL PEAK 18(8P21.3) WILD-TYPE     36     37     32     35
D46V7, multiclass
        clus
vv       DEL PEAK 18(8P21.3) MUTATED DEL PEAK 18(8P21.3) WILD-TYPE
  CLUS_1                          26                            36
  CLUS_2                          69                            37
  CLUS_3                          28                            32
  CLUS_4                          55                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P21.3) MUTATED       24     17     32     53     14     38
  DEL PEAK 18(8P21.3) WILD-TYPE     46     24      8     29     11     22
D46V8, multiclass
        clus
vv       DEL PEAK 18(8P21.3) MUTATED DEL PEAK 18(8P21.3) WILD-TYPE
  CLUS_1                          24                            46
  CLUS_2                          17                            24
  CLUS_3                          32                             8
  CLUS_4                          53                            29
  CLUS_5                          14                            11
  CLUS_6                          38                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 19(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9P23) MUTATED       15     28      2
  DEL PEAK 19(9P23) WILD-TYPE    258    106     83
D47V1, multiclass
        clus
vv       DEL PEAK 19(9P23) MUTATED DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                        15                         258
  CLUS_2                        28                         106
  CLUS_3                         2                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9P23) MUTATED       10     15     20
  DEL PEAK 19(9P23) WILD-TYPE    150    150    147
D47V2, multiclass
        clus
vv       DEL PEAK 19(9P23) MUTATED DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                        10                         150
  CLUS_2                        15                         150
  CLUS_3                        20                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9P23) MUTATED        3     16     26
  DEL PEAK 19(9P23) WILD-TYPE    143    155    148
D47V3, multiclass
        clus
vv       DEL PEAK 19(9P23) MUTATED DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                         3                         143
  CLUS_2                        16                         155
  CLUS_3                        26                         148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9P23) MUTATED        7     19     19
  DEL PEAK 19(9P23) WILD-TYPE    164    186     96
D47V4, multiclass
        clus
vv       DEL PEAK 19(9P23) MUTATED DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                         7                         164
  CLUS_2                        19                         186
  CLUS_3                        19                          96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9P23) MUTATED       13      7     24
  DEL PEAK 19(9P23) WILD-TYPE    145    140    159
D47V5, multiclass
        clus
vv       DEL PEAK 19(9P23) MUTATED DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                        13                         145
  CLUS_2                         7                         140
  CLUS_3                        24                         159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9P23) MUTATED        9      9     10     14      2
  DEL PEAK 19(9P23) WILD-TYPE    138     89     49    114     54
D47V6, multiclass
        clus
vv       DEL PEAK 19(9P23) MUTATED DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                         9                         138
  CLUS_2                         9                          89
  CLUS_3                        10                          49
  CLUS_4                        14                         114
  CLUS_5                         2                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9P23) MUTATED        3     15      2      9
  DEL PEAK 19(9P23) WILD-TYPE     59     91     58     81
D47V7, multiclass
        clus
vv       DEL PEAK 19(9P23) MUTATED DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                         3                          59
  CLUS_2                        15                          91
  CLUS_3                         2                          58
  CLUS_4                         9                          81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9P23) MUTATED        1      3      8     10      3      4
  DEL PEAK 19(9P23) WILD-TYPE     69     38     32     72     22     56
D47V8, multiclass
        clus
vv       DEL PEAK 19(9P23) MUTATED DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                         1                          69
  CLUS_2                         3                          38
  CLUS_3                         8                          32
  CLUS_4                        10                          72
  CLUS_5                         3                          22
  CLUS_6                         4                          56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 20(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       78     68     11
  DEL PEAK 20(10Q23.31) WILD-TYPE    195     66     74
D48V1, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            78                             195
  CLUS_2                            68                              66
  CLUS_3                            11                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       28     39     90
  DEL PEAK 20(10Q23.31) WILD-TYPE    132    126     77
D48V2, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            28                             132
  CLUS_2                            39                             126
  CLUS_3                            90                              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       21     31    105
  DEL PEAK 20(10Q23.31) WILD-TYPE    125    140     69
D48V3, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            21                             125
  CLUS_2                            31                             140
  CLUS_3                           105                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       33     47     77
  DEL PEAK 20(10Q23.31) WILD-TYPE    138    158     38
D48V4, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            33                             138
  CLUS_2                            47                             158
  CLUS_3                            77                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       47     36     72
  DEL PEAK 20(10Q23.31) WILD-TYPE    111    111    111
D48V5, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            47                             111
  CLUS_2                            36                             111
  CLUS_3                            72                             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       41     12     25     57     20
  DEL PEAK 20(10Q23.31) WILD-TYPE    106     86     34     71     36
D48V6, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            41                             106
  CLUS_2                            12                              86
  CLUS_3                            25                              34
  CLUS_4                            57                              71
  CLUS_5                            20                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q23.31) MUTATED       16     41     15     39
  DEL PEAK 20(10Q23.31) WILD-TYPE     46     65     45     51
D48V7, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            16                              46
  CLUS_2                            41                              65
  CLUS_3                            15                              45
  CLUS_4                            39                              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       10      3     32     31      9     26
  DEL PEAK 20(10Q23.31) WILD-TYPE     60     38      8     51     16     34
D48V8, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            10                              60
  CLUS_2                             3                              38
  CLUS_3                            32                               8
  CLUS_4                            31                              51
  CLUS_5                             9                              16
  CLUS_6                            26                              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 21(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P11.2) MUTATED        5     23      6
  DEL PEAK 21(11P11.2) WILD-TYPE    268    111     79
D49V1, multiclass
        clus
vv       DEL PEAK 21(11P11.2) MUTATED DEL PEAK 21(11P11.2) WILD-TYPE
  CLUS_1                            5                            268
  CLUS_2                           23                            111
  CLUS_3                            6                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P11.2) MUTATED        6     21      7
  DEL PEAK 21(11P11.2) WILD-TYPE    154    144    160
D49V2, multiclass
        clus
vv       DEL PEAK 21(11P11.2) MUTATED DEL PEAK 21(11P11.2) WILD-TYPE
  CLUS_1                            6                            154
  CLUS_2                           21                            144
  CLUS_3                            7                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P11.2) MUTATED        6     22      6
  DEL PEAK 21(11P11.2) WILD-TYPE    140    149    168
D49V3, multiclass
        clus
vv       DEL PEAK 21(11P11.2) MUTATED DEL PEAK 21(11P11.2) WILD-TYPE
  CLUS_1                            6                            140
  CLUS_2                           22                            149
  CLUS_3                            6                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P11.2) MUTATED        7     22      5
  DEL PEAK 21(11P11.2) WILD-TYPE    164    183    110
D49V4, multiclass
        clus
vv       DEL PEAK 21(11P11.2) MUTATED DEL PEAK 21(11P11.2) WILD-TYPE
  CLUS_1                            7                            164
  CLUS_2                           22                            183
  CLUS_3                            5                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P11.2) MUTATED        6      8     20
  DEL PEAK 21(11P11.2) WILD-TYPE    152    139    163
D49V5, multiclass
        clus
vv       DEL PEAK 21(11P11.2) MUTATED DEL PEAK 21(11P11.2) WILD-TYPE
  CLUS_1                            6                            152
  CLUS_2                            8                            139
  CLUS_3                           20                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11P11.2) MUTATED        5      7      2     17      3
  DEL PEAK 21(11P11.2) WILD-TYPE    142     91     57    111     53
D49V6, multiclass
        clus
vv       DEL PEAK 21(11P11.2) MUTATED DEL PEAK 21(11P11.2) WILD-TYPE
  CLUS_1                            5                            142
  CLUS_2                            7                             91
  CLUS_3                            2                             57
  CLUS_4                           17                            111
  CLUS_5                            3                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P11.2) MUTATED        0     13      3      4
  DEL PEAK 21(11P11.2) WILD-TYPE     62     93     57     86
D49V7, multiclass
        clus
vv       DEL PEAK 21(11P11.2) MUTATED DEL PEAK 21(11P11.2) WILD-TYPE
  CLUS_1                            0                             62
  CLUS_2                           13                             93
  CLUS_3                            3                             57
  CLUS_4                            4                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P11.2) MUTATED        3      2      2      9      0      4
  DEL PEAK 21(11P11.2) WILD-TYPE     67     39     38     73     25     56
D49V8, multiclass
        clus
vv       DEL PEAK 21(11P11.2) MUTATED DEL PEAK 21(11P11.2) WILD-TYPE
  CLUS_1                            3                             67
  CLUS_2                            2                             39
  CLUS_3                            2                             38
  CLUS_4                            9                             73
  CLUS_5                            0                             25
  CLUS_6                            4                             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 22(11Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q22.3) MUTATED       19     19      5
  DEL PEAK 22(11Q22.3) WILD-TYPE    254    115     80
D50V1, multiclass
        clus
vv       DEL PEAK 22(11Q22.3) MUTATED DEL PEAK 22(11Q22.3) WILD-TYPE
  CLUS_1                           19                            254
  CLUS_2                           19                            115
  CLUS_3                            5                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q22.3) MUTATED       10     23     10
  DEL PEAK 22(11Q22.3) WILD-TYPE    150    142    157
D50V2, multiclass
        clus
vv       DEL PEAK 22(11Q22.3) MUTATED DEL PEAK 22(11Q22.3) WILD-TYPE
  CLUS_1                           10                            150
  CLUS_2                           23                            142
  CLUS_3                           10                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q22.3) MUTATED       15     17     11
  DEL PEAK 22(11Q22.3) WILD-TYPE    131    154    163
D50V3, multiclass
        clus
vv       DEL PEAK 22(11Q22.3) MUTATED DEL PEAK 22(11Q22.3) WILD-TYPE
  CLUS_1                           15                            131
  CLUS_2                           17                            154
  CLUS_3                           11                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q22.3) MUTATED       15     23      5
  DEL PEAK 22(11Q22.3) WILD-TYPE    156    182    110
D50V4, multiclass
        clus
vv       DEL PEAK 22(11Q22.3) MUTATED DEL PEAK 22(11Q22.3) WILD-TYPE
  CLUS_1                           15                            156
  CLUS_2                           23                            182
  CLUS_3                            5                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q22.3) MUTATED       13     12     18
  DEL PEAK 22(11Q22.3) WILD-TYPE    145    135    165
D50V5, multiclass
        clus
vv       DEL PEAK 22(11Q22.3) MUTATED DEL PEAK 22(11Q22.3) WILD-TYPE
  CLUS_1                           13                            145
  CLUS_2                           12                            135
  CLUS_3                           18                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11Q22.3) MUTATED       11      8      5     15      4
  DEL PEAK 22(11Q22.3) WILD-TYPE    136     90     54    113     52
D50V6, multiclass
        clus
vv       DEL PEAK 22(11Q22.3) MUTATED DEL PEAK 22(11Q22.3) WILD-TYPE
  CLUS_1                           11                            136
  CLUS_2                            8                             90
  CLUS_3                            5                             54
  CLUS_4                           15                            113
  CLUS_5                            4                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q22.3) MUTATED        2     12      2      6
  DEL PEAK 22(11Q22.3) WILD-TYPE     60     94     58     84
D50V7, multiclass
        clus
vv       DEL PEAK 22(11Q22.3) MUTATED DEL PEAK 22(11Q22.3) WILD-TYPE
  CLUS_1                            2                             60
  CLUS_2                           12                             94
  CLUS_3                            2                             58
  CLUS_4                            6                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q22.3) MUTATED        2      0      1     12      1      6
  DEL PEAK 22(11Q22.3) WILD-TYPE     68     41     39     70     24     54
D50V8, multiclass
        clus
vv       DEL PEAK 22(11Q22.3) MUTATED DEL PEAK 22(11Q22.3) WILD-TYPE
  CLUS_1                            2                             68
  CLUS_2                            0                             41
  CLUS_3                            1                             39
  CLUS_4                           12                             70
  CLUS_5                            1                             24
  CLUS_6                            6                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 23(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       23     19      6
  DEL PEAK 23(11Q23.2) WILD-TYPE    250    115     79
D51V1, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           23                            250
  CLUS_2                           19                            115
  CLUS_3                            6                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       11     23     14
  DEL PEAK 23(11Q23.2) WILD-TYPE    149    142    153
D51V2, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           11                            149
  CLUS_2                           23                            142
  CLUS_3                           14                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       14     17     17
  DEL PEAK 23(11Q23.2) WILD-TYPE    132    154    157
D51V3, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           14                            132
  CLUS_2                           17                            154
  CLUS_3                           17                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       17     21     10
  DEL PEAK 23(11Q23.2) WILD-TYPE    154    184    105
D51V4, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           17                            154
  CLUS_2                           21                            184
  CLUS_3                           10                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       11     14     23
  DEL PEAK 23(11Q23.2) WILD-TYPE    147    133    160
D51V5, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           11                            147
  CLUS_2                           14                            133
  CLUS_3                           23                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q23.2) MUTATED       10     11      5     17      5
  DEL PEAK 23(11Q23.2) WILD-TYPE    137     87     54    111     51
D51V6, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           10                            137
  CLUS_2                           11                             87
  CLUS_3                            5                             54
  CLUS_4                           17                            111
  CLUS_5                            5                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q23.2) MUTATED        3     14      4      9
  DEL PEAK 23(11Q23.2) WILD-TYPE     59     92     56     81
D51V7, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                            3                             59
  CLUS_2                           14                             92
  CLUS_3                            4                             56
  CLUS_4                            9                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q23.2) MUTATED        4      1      4     12      2      7
  DEL PEAK 23(11Q23.2) WILD-TYPE     66     40     36     70     23     53
D51V8, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                            4                             66
  CLUS_2                            1                             40
  CLUS_3                            4                             36
  CLUS_4                           12                             70
  CLUS_5                            2                             23
  CLUS_6                            7                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 24(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       59     54     11
  DEL PEAK 24(12P13.1) WILD-TYPE    214     80     74
D52V1, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           59                            214
  CLUS_2                           54                             80
  CLUS_3                           11                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       20     53     51
  DEL PEAK 24(12P13.1) WILD-TYPE    140    112    116
D52V2, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           20                            140
  CLUS_2                           53                            112
  CLUS_3                           51                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       25     39     60
  DEL PEAK 24(12P13.1) WILD-TYPE    121    132    114
D52V3, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           25                            121
  CLUS_2                           39                            132
  CLUS_3                           60                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       31     52     41
  DEL PEAK 24(12P13.1) WILD-TYPE    140    153     74
D52V4, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           31                            140
  CLUS_2                           52                            153
  CLUS_3                           41                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       36     29     56
  DEL PEAK 24(12P13.1) WILD-TYPE    122    118    127
D52V5, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           36                            122
  CLUS_2                           29                            118
  CLUS_3                           56                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(12P13.1) MUTATED       31     10     18     47     15
  DEL PEAK 24(12P13.1) WILD-TYPE    116     88     41     81     41
D52V6, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           31                            116
  CLUS_2                           10                             88
  CLUS_3                           18                             41
  CLUS_4                           47                             81
  CLUS_5                           15                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12P13.1) MUTATED        5     41     12     21
  DEL PEAK 24(12P13.1) WILD-TYPE     57     65     48     69
D52V7, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                            5                             57
  CLUS_2                           41                             65
  CLUS_3                           12                             48
  CLUS_4                           21                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(12P13.1) MUTATED       14      4     16     29      3     13
  DEL PEAK 24(12P13.1) WILD-TYPE     56     37     24     53     22     47
D52V8, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           14                             56
  CLUS_2                            4                             37
  CLUS_3                           16                             24
  CLUS_4                           29                             53
  CLUS_5                            3                             22
  CLUS_6                           13                             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 25(12Q24.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.32) MUTATED       15     25      3
  DEL PEAK 25(12Q24.32) WILD-TYPE    258    109     82
D53V1, multiclass
        clus
vv       DEL PEAK 25(12Q24.32) MUTATED DEL PEAK 25(12Q24.32) WILD-TYPE
  CLUS_1                            15                             258
  CLUS_2                            25                             109
  CLUS_3                             3                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.32) MUTATED       10     17     16
  DEL PEAK 25(12Q24.32) WILD-TYPE    150    148    151
D53V2, multiclass
        clus
vv       DEL PEAK 25(12Q24.32) MUTATED DEL PEAK 25(12Q24.32) WILD-TYPE
  CLUS_1                            10                             150
  CLUS_2                            17                             148
  CLUS_3                            16                             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.32) MUTATED        8     18     17
  DEL PEAK 25(12Q24.32) WILD-TYPE    138    153    157
D53V3, multiclass
        clus
vv       DEL PEAK 25(12Q24.32) MUTATED DEL PEAK 25(12Q24.32) WILD-TYPE
  CLUS_1                             8                             138
  CLUS_2                            18                             153
  CLUS_3                            17                             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.32) MUTATED       12     19     12
  DEL PEAK 25(12Q24.32) WILD-TYPE    159    186    103
D53V4, multiclass
        clus
vv       DEL PEAK 25(12Q24.32) MUTATED DEL PEAK 25(12Q24.32) WILD-TYPE
  CLUS_1                            12                             159
  CLUS_2                            19                             186
  CLUS_3                            12                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.32) MUTATED       15     10     18
  DEL PEAK 25(12Q24.32) WILD-TYPE    143    137    165
D53V5, multiclass
        clus
vv       DEL PEAK 25(12Q24.32) MUTATED DEL PEAK 25(12Q24.32) WILD-TYPE
  CLUS_1                            15                             143
  CLUS_2                            10                             137
  CLUS_3                            18                             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12Q24.32) MUTATED       12      7      5     16      3
  DEL PEAK 25(12Q24.32) WILD-TYPE    135     91     54    112     53
D53V6, multiclass
        clus
vv       DEL PEAK 25(12Q24.32) MUTATED DEL PEAK 25(12Q24.32) WILD-TYPE
  CLUS_1                            12                             135
  CLUS_2                             7                              91
  CLUS_3                             5                              54
  CLUS_4                            16                             112
  CLUS_5                             3                              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q24.32) MUTATED        2     11      5      6
  DEL PEAK 25(12Q24.32) WILD-TYPE     60     95     55     84
D53V7, multiclass
        clus
vv       DEL PEAK 25(12Q24.32) MUTATED DEL PEAK 25(12Q24.32) WILD-TYPE
  CLUS_1                             2                              60
  CLUS_2                            11                              95
  CLUS_3                             5                              55
  CLUS_4                             6                              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q24.32) MUTATED        3      1      8      6      1      5
  DEL PEAK 25(12Q24.32) WILD-TYPE     67     40     32     76     24     55
D53V8, multiclass
        clus
vv       DEL PEAK 25(12Q24.32) MUTATED DEL PEAK 25(12Q24.32) WILD-TYPE
  CLUS_1                             3                              67
  CLUS_2                             1                              40
  CLUS_3                             8                              32
  CLUS_4                             6                              76
  CLUS_5                             1                              24
  CLUS_6                             5                              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 26(13Q14.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.13) MUTATED       86     90     51
  DEL PEAK 26(13Q14.13) WILD-TYPE    187     44     34
D54V1, multiclass
        clus
vv       DEL PEAK 26(13Q14.13) MUTATED DEL PEAK 26(13Q14.13) WILD-TYPE
  CLUS_1                            86                             187
  CLUS_2                            90                              44
  CLUS_3                            51                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.13) MUTATED       43     98     86
  DEL PEAK 26(13Q14.13) WILD-TYPE    117     67     81
D54V2, multiclass
        clus
vv       DEL PEAK 26(13Q14.13) MUTATED DEL PEAK 26(13Q14.13) WILD-TYPE
  CLUS_1                            43                             117
  CLUS_2                            98                              67
  CLUS_3                            86                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.13) MUTATED       45     89     93
  DEL PEAK 26(13Q14.13) WILD-TYPE    101     82     81
D54V3, multiclass
        clus
vv       DEL PEAK 26(13Q14.13) MUTATED DEL PEAK 26(13Q14.13) WILD-TYPE
  CLUS_1                            45                             101
  CLUS_2                            89                              82
  CLUS_3                            93                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.13) MUTATED       56    105     66
  DEL PEAK 26(13Q14.13) WILD-TYPE    115    100     49
D54V4, multiclass
        clus
vv       DEL PEAK 26(13Q14.13) MUTATED DEL PEAK 26(13Q14.13) WILD-TYPE
  CLUS_1                            56                             115
  CLUS_2                           105                             100
  CLUS_3                            66                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.13) MUTATED       60     58    108
  DEL PEAK 26(13Q14.13) WILD-TYPE     98     89     75
D54V5, multiclass
        clus
vv       DEL PEAK 26(13Q14.13) MUTATED DEL PEAK 26(13Q14.13) WILD-TYPE
  CLUS_1                            60                              98
  CLUS_2                            58                              89
  CLUS_3                           108                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(13Q14.13) MUTATED       55     37     25     78     31
  DEL PEAK 26(13Q14.13) WILD-TYPE     92     61     34     50     25
D54V6, multiclass
        clus
vv       DEL PEAK 26(13Q14.13) MUTATED DEL PEAK 26(13Q14.13) WILD-TYPE
  CLUS_1                            55                              92
  CLUS_2                            37                              61
  CLUS_3                            25                              34
  CLUS_4                            78                              50
  CLUS_5                            31                              25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(13Q14.13) MUTATED       19     66     21     46
  DEL PEAK 26(13Q14.13) WILD-TYPE     43     40     39     44
D54V7, multiclass
        clus
vv       DEL PEAK 26(13Q14.13) MUTATED DEL PEAK 26(13Q14.13) WILD-TYPE
  CLUS_1                            19                              43
  CLUS_2                            66                              40
  CLUS_3                            21                              39
  CLUS_4                            46                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(13Q14.13) MUTATED       19     14     23     53     11     32
  DEL PEAK 26(13Q14.13) WILD-TYPE     51     27     17     29     14     28
D54V8, multiclass
        clus
vv       DEL PEAK 26(13Q14.13) MUTATED DEL PEAK 26(13Q14.13) WILD-TYPE
  CLUS_1                            19                              51
  CLUS_2                            14                              27
  CLUS_3                            23                              17
  CLUS_4                            53                              29
  CLUS_5                            11                              14
  CLUS_6                            32                              28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 27(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q22.1) MUTATED       56     88     32
  DEL PEAK 27(13Q22.1) WILD-TYPE    217     46     53
D55V1, multiclass
        clus
vv       DEL PEAK 27(13Q22.1) MUTATED DEL PEAK 27(13Q22.1) WILD-TYPE
  CLUS_1                           56                            217
  CLUS_2                           88                             46
  CLUS_3                           32                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q22.1) MUTATED       35     74     67
  DEL PEAK 27(13Q22.1) WILD-TYPE    125     91    100
D55V2, multiclass
        clus
vv       DEL PEAK 27(13Q22.1) MUTATED DEL PEAK 27(13Q22.1) WILD-TYPE
  CLUS_1                           35                            125
  CLUS_2                           74                             91
  CLUS_3                           67                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q22.1) MUTATED       29     72     75
  DEL PEAK 27(13Q22.1) WILD-TYPE    117     99     99
D55V3, multiclass
        clus
vv       DEL PEAK 27(13Q22.1) MUTATED DEL PEAK 27(13Q22.1) WILD-TYPE
  CLUS_1                           29                            117
  CLUS_2                           72                             99
  CLUS_3                           75                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q22.1) MUTATED       40     86     50
  DEL PEAK 27(13Q22.1) WILD-TYPE    131    119     65
D55V4, multiclass
        clus
vv       DEL PEAK 27(13Q22.1) MUTATED DEL PEAK 27(13Q22.1) WILD-TYPE
  CLUS_1                           40                            131
  CLUS_2                           86                            119
  CLUS_3                           50                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q22.1) MUTATED       46     46     82
  DEL PEAK 27(13Q22.1) WILD-TYPE    112    101    101
D55V5, multiclass
        clus
vv       DEL PEAK 27(13Q22.1) MUTATED DEL PEAK 27(13Q22.1) WILD-TYPE
  CLUS_1                           46                            112
  CLUS_2                           46                            101
  CLUS_3                           82                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(13Q22.1) MUTATED       42     27     19     64     22
  DEL PEAK 27(13Q22.1) WILD-TYPE    105     71     40     64     34
D55V6, multiclass
        clus
vv       DEL PEAK 27(13Q22.1) MUTATED DEL PEAK 27(13Q22.1) WILD-TYPE
  CLUS_1                           42                            105
  CLUS_2                           27                             71
  CLUS_3                           19                             40
  CLUS_4                           64                             64
  CLUS_5                           22                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(13Q22.1) MUTATED       13     50     17     39
  DEL PEAK 27(13Q22.1) WILD-TYPE     49     56     43     51
D55V7, multiclass
        clus
vv       DEL PEAK 27(13Q22.1) MUTATED DEL PEAK 27(13Q22.1) WILD-TYPE
  CLUS_1                           13                             49
  CLUS_2                           50                             56
  CLUS_3                           17                             43
  CLUS_4                           39                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(13Q22.1) MUTATED       17      9     22     44      6     21
  DEL PEAK 27(13Q22.1) WILD-TYPE     53     32     18     38     19     39
D55V8, multiclass
        clus
vv       DEL PEAK 27(13Q22.1) MUTATED DEL PEAK 27(13Q22.1) WILD-TYPE
  CLUS_1                           17                             53
  CLUS_2                            9                             32
  CLUS_3                           22                             18
  CLUS_4                           44                             38
  CLUS_5                            6                             19
  CLUS_6                           21                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 28(15Q21.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q21.3) MUTATED       17     47      3
  DEL PEAK 28(15Q21.3) WILD-TYPE    256     87     82
D56V1, multiclass
        clus
vv       DEL PEAK 28(15Q21.3) MUTATED DEL PEAK 28(15Q21.3) WILD-TYPE
  CLUS_1                           17                            256
  CLUS_2                           47                             87
  CLUS_3                            3                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q21.3) MUTATED        5     29     33
  DEL PEAK 28(15Q21.3) WILD-TYPE    155    136    134
D56V2, multiclass
        clus
vv       DEL PEAK 28(15Q21.3) MUTATED DEL PEAK 28(15Q21.3) WILD-TYPE
  CLUS_1                            5                            155
  CLUS_2                           29                            136
  CLUS_3                           33                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q21.3) MUTATED        3     28     36
  DEL PEAK 28(15Q21.3) WILD-TYPE    143    143    138
D56V3, multiclass
        clus
vv       DEL PEAK 28(15Q21.3) MUTATED DEL PEAK 28(15Q21.3) WILD-TYPE
  CLUS_1                            3                            143
  CLUS_2                           28                            143
  CLUS_3                           36                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q21.3) MUTATED        7     37     23
  DEL PEAK 28(15Q21.3) WILD-TYPE    164    168     92
D56V4, multiclass
        clus
vv       DEL PEAK 28(15Q21.3) MUTATED DEL PEAK 28(15Q21.3) WILD-TYPE
  CLUS_1                            7                            164
  CLUS_2                           37                            168
  CLUS_3                           23                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q21.3) MUTATED        8     15     42
  DEL PEAK 28(15Q21.3) WILD-TYPE    150    132    141
D56V5, multiclass
        clus
vv       DEL PEAK 28(15Q21.3) MUTATED DEL PEAK 28(15Q21.3) WILD-TYPE
  CLUS_1                            8                            150
  CLUS_2                           15                            132
  CLUS_3                           42                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(15Q21.3) MUTATED        7      8     10     28     12
  DEL PEAK 28(15Q21.3) WILD-TYPE    140     90     49    100     44
D56V6, multiclass
        clus
vv       DEL PEAK 28(15Q21.3) MUTATED DEL PEAK 28(15Q21.3) WILD-TYPE
  CLUS_1                            7                            140
  CLUS_2                            8                             90
  CLUS_3                           10                             49
  CLUS_4                           28                            100
  CLUS_5                           12                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(15Q21.3) MUTATED        1     26      5     12
  DEL PEAK 28(15Q21.3) WILD-TYPE     61     80     55     78
D56V7, multiclass
        clus
vv       DEL PEAK 28(15Q21.3) MUTATED DEL PEAK 28(15Q21.3) WILD-TYPE
  CLUS_1                            1                             61
  CLUS_2                           26                             80
  CLUS_3                            5                             55
  CLUS_4                           12                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(15Q21.3) MUTATED        0      2     14     18      1      9
  DEL PEAK 28(15Q21.3) WILD-TYPE     70     39     26     64     24     51
D56V8, multiclass
        clus
vv       DEL PEAK 28(15Q21.3) MUTATED DEL PEAK 28(15Q21.3) WILD-TYPE
  CLUS_1                            0                             70
  CLUS_2                            2                             39
  CLUS_3                           14                             26
  CLUS_4                           18                             64
  CLUS_5                            1                             24
  CLUS_6                            9                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 29(16Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q22.3) MUTATED       88     93     10
  DEL PEAK 29(16Q22.3) WILD-TYPE    185     41     75
D57V1, multiclass
        clus
vv       DEL PEAK 29(16Q22.3) MUTATED DEL PEAK 29(16Q22.3) WILD-TYPE
  CLUS_1                           88                            185
  CLUS_2                           93                             41
  CLUS_3                           10                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q22.3) MUTATED       32     72     87
  DEL PEAK 29(16Q22.3) WILD-TYPE    128     93     80
D57V2, multiclass
        clus
vv       DEL PEAK 29(16Q22.3) MUTATED DEL PEAK 29(16Q22.3) WILD-TYPE
  CLUS_1                           32                            128
  CLUS_2                           72                             93
  CLUS_3                           87                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q22.3) MUTATED       35     60     96
  DEL PEAK 29(16Q22.3) WILD-TYPE    111    111     78
D57V3, multiclass
        clus
vv       DEL PEAK 29(16Q22.3) MUTATED DEL PEAK 29(16Q22.3) WILD-TYPE
  CLUS_1                           35                            111
  CLUS_2                           60                            111
  CLUS_3                           96                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q22.3) MUTATED       51     77     63
  DEL PEAK 29(16Q22.3) WILD-TYPE    120    128     52
D57V4, multiclass
        clus
vv       DEL PEAK 29(16Q22.3) MUTATED DEL PEAK 29(16Q22.3) WILD-TYPE
  CLUS_1                           51                            120
  CLUS_2                           77                            128
  CLUS_3                           63                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q22.3) MUTATED       56     39     94
  DEL PEAK 29(16Q22.3) WILD-TYPE    102    108     89
D57V5, multiclass
        clus
vv       DEL PEAK 29(16Q22.3) MUTATED DEL PEAK 29(16Q22.3) WILD-TYPE
  CLUS_1                           56                            102
  CLUS_2                           39                            108
  CLUS_3                           94                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(16Q22.3) MUTATED       44     22     28     78     17
  DEL PEAK 29(16Q22.3) WILD-TYPE    103     76     31     50     39
D57V6, multiclass
        clus
vv       DEL PEAK 29(16Q22.3) MUTATED DEL PEAK 29(16Q22.3) WILD-TYPE
  CLUS_1                           44                            103
  CLUS_2                           22                             76
  CLUS_3                           28                             31
  CLUS_4                           78                             50
  CLUS_5                           17                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q22.3) MUTATED       10     57     16     31
  DEL PEAK 29(16Q22.3) WILD-TYPE     52     49     44     59
D57V7, multiclass
        clus
vv       DEL PEAK 29(16Q22.3) MUTATED DEL PEAK 29(16Q22.3) WILD-TYPE
  CLUS_1                           10                             52
  CLUS_2                           57                             49
  CLUS_3                           16                             44
  CLUS_4                           31                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q22.3) MUTATED       16      4     20     46      4     24
  DEL PEAK 29(16Q22.3) WILD-TYPE     54     37     20     36     21     36
D57V8, multiclass
        clus
vv       DEL PEAK 29(16Q22.3) MUTATED DEL PEAK 29(16Q22.3) WILD-TYPE
  CLUS_1                           16                             54
  CLUS_2                            4                             37
  CLUS_3                           20                             20
  CLUS_4                           46                             36
  CLUS_5                            4                             21
  CLUS_6                           24                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 30(16Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.1) MUTATED      105    101      7
  DEL PEAK 30(16Q24.1) WILD-TYPE    168     33     78
D58V1, multiclass
        clus
vv       DEL PEAK 30(16Q24.1) MUTATED DEL PEAK 30(16Q24.1) WILD-TYPE
  CLUS_1                          105                            168
  CLUS_2                          101                             33
  CLUS_3                            7                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.1) MUTATED       39     79     95
  DEL PEAK 30(16Q24.1) WILD-TYPE    121     86     72
D58V2, multiclass
        clus
vv       DEL PEAK 30(16Q24.1) MUTATED DEL PEAK 30(16Q24.1) WILD-TYPE
  CLUS_1                           39                            121
  CLUS_2                           79                             86
  CLUS_3                           95                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.1) MUTATED       44     65    104
  DEL PEAK 30(16Q24.1) WILD-TYPE    102    106     70
D58V3, multiclass
        clus
vv       DEL PEAK 30(16Q24.1) MUTATED DEL PEAK 30(16Q24.1) WILD-TYPE
  CLUS_1                           44                            102
  CLUS_2                           65                            106
  CLUS_3                          104                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.1) MUTATED       63     86     64
  DEL PEAK 30(16Q24.1) WILD-TYPE    108    119     51
D58V4, multiclass
        clus
vv       DEL PEAK 30(16Q24.1) MUTATED DEL PEAK 30(16Q24.1) WILD-TYPE
  CLUS_1                           63                            108
  CLUS_2                           86                            119
  CLUS_3                           64                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.1) MUTATED       64     47     99
  DEL PEAK 30(16Q24.1) WILD-TYPE     94    100     84
D58V5, multiclass
        clus
vv       DEL PEAK 30(16Q24.1) MUTATED DEL PEAK 30(16Q24.1) WILD-TYPE
  CLUS_1                           64                             94
  CLUS_2                           47                            100
  CLUS_3                           99                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q24.1) MUTATED       50     25     32     86     17
  DEL PEAK 30(16Q24.1) WILD-TYPE     97     73     27     42     39
D58V6, multiclass
        clus
vv       DEL PEAK 30(16Q24.1) MUTATED DEL PEAK 30(16Q24.1) WILD-TYPE
  CLUS_1                           50                             97
  CLUS_2                           25                             73
  CLUS_3                           32                             27
  CLUS_4                           86                             42
  CLUS_5                           17                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q24.1) MUTATED       16     57     21     35
  DEL PEAK 30(16Q24.1) WILD-TYPE     46     49     39     55
D58V7, multiclass
        clus
vv       DEL PEAK 30(16Q24.1) MUTATED DEL PEAK 30(16Q24.1) WILD-TYPE
  CLUS_1                           16                             46
  CLUS_2                           57                             49
  CLUS_3                           21                             39
  CLUS_4                           35                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(16Q24.1) MUTATED       16      7     22     49      8     27
  DEL PEAK 30(16Q24.1) WILD-TYPE     54     34     18     33     17     33
D58V8, multiclass
        clus
vv       DEL PEAK 30(16Q24.1) MUTATED DEL PEAK 30(16Q24.1) WILD-TYPE
  CLUS_1                           16                             54
  CLUS_2                            7                             34
  CLUS_3                           22                             18
  CLUS_4                           49                             33
  CLUS_5                            8                             17
  CLUS_6                           27                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 31(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P13.1) MUTATED       71     85      7
  DEL PEAK 31(17P13.1) WILD-TYPE    202     49     78
D59V1, multiclass
        clus
vv       DEL PEAK 31(17P13.1) MUTATED DEL PEAK 31(17P13.1) WILD-TYPE
  CLUS_1                           71                            202
  CLUS_2                           85                             49
  CLUS_3                            7                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P13.1) MUTATED       32     44     87
  DEL PEAK 31(17P13.1) WILD-TYPE    128    121     80
D59V2, multiclass
        clus
vv       DEL PEAK 31(17P13.1) MUTATED DEL PEAK 31(17P13.1) WILD-TYPE
  CLUS_1                           32                            128
  CLUS_2                           44                            121
  CLUS_3                           87                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P13.1) MUTATED       27     37     99
  DEL PEAK 31(17P13.1) WILD-TYPE    119    134     75
D59V3, multiclass
        clus
vv       DEL PEAK 31(17P13.1) MUTATED DEL PEAK 31(17P13.1) WILD-TYPE
  CLUS_1                           27                            119
  CLUS_2                           37                            134
  CLUS_3                           99                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P13.1) MUTATED       38     54     71
  DEL PEAK 31(17P13.1) WILD-TYPE    133    151     44
D59V4, multiclass
        clus
vv       DEL PEAK 31(17P13.1) MUTATED DEL PEAK 31(17P13.1) WILD-TYPE
  CLUS_1                           38                            133
  CLUS_2                           54                            151
  CLUS_3                           71                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P13.1) MUTATED       46     34     81
  DEL PEAK 31(17P13.1) WILD-TYPE    112    113    102
D59V5, multiclass
        clus
vv       DEL PEAK 31(17P13.1) MUTATED DEL PEAK 31(17P13.1) WILD-TYPE
  CLUS_1                           46                            112
  CLUS_2                           34                            113
  CLUS_3                           81                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17P13.1) MUTATED       36     15     34     60     16
  DEL PEAK 31(17P13.1) WILD-TYPE    111     83     25     68     40
D59V6, multiclass
        clus
vv       DEL PEAK 31(17P13.1) MUTATED DEL PEAK 31(17P13.1) WILD-TYPE
  CLUS_1                           36                            111
  CLUS_2                           15                             83
  CLUS_3                           34                             25
  CLUS_4                           60                             68
  CLUS_5                           16                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17P13.1) MUTATED       14     52     15     32
  DEL PEAK 31(17P13.1) WILD-TYPE     48     54     45     58
D59V7, multiclass
        clus
vv       DEL PEAK 31(17P13.1) MUTATED DEL PEAK 31(17P13.1) WILD-TYPE
  CLUS_1                           14                             48
  CLUS_2                           52                             54
  CLUS_3                           15                             45
  CLUS_4                           32                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17P13.1) MUTATED       16      3     28     40      8     18
  DEL PEAK 31(17P13.1) WILD-TYPE     54     38     12     42     17     42
D59V8, multiclass
        clus
vv       DEL PEAK 31(17P13.1) MUTATED DEL PEAK 31(17P13.1) WILD-TYPE
  CLUS_1                           16                             54
  CLUS_2                            3                             38
  CLUS_3                           28                             12
  CLUS_4                           40                             42
  CLUS_5                            8                             17
  CLUS_6                           18                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 32(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q21.31) MUTATED       52     41      3
  DEL PEAK 32(17Q21.31) WILD-TYPE    221     93     82
D60V1, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            52                             221
  CLUS_2                            41                              93
  CLUS_3                             3                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q21.31) MUTATED       21     17     58
  DEL PEAK 32(17Q21.31) WILD-TYPE    139    148    109
D60V2, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            21                             139
  CLUS_2                            17                             148
  CLUS_3                            58                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q21.31) MUTATED       19     14     63
  DEL PEAK 32(17Q21.31) WILD-TYPE    127    157    111
D60V3, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            19                             127
  CLUS_2                            14                             157
  CLUS_3                            63                             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q21.31) MUTATED       33     26     37
  DEL PEAK 32(17Q21.31) WILD-TYPE    138    179     78
D60V4, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            33                             138
  CLUS_2                            26                             179
  CLUS_3                            37                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q21.31) MUTATED       28     26     40
  DEL PEAK 32(17Q21.31) WILD-TYPE    130    121    143
D60V5, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            28                             130
  CLUS_2                            26                             121
  CLUS_3                            40                             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(17Q21.31) MUTATED       23     14     19     25     13
  DEL PEAK 32(17Q21.31) WILD-TYPE    124     84     40    103     43
D60V6, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            23                             124
  CLUS_2                            14                              84
  CLUS_3                            19                              40
  CLUS_4                            25                             103
  CLUS_5                            13                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17Q21.31) MUTATED        7     24      9     21
  DEL PEAK 32(17Q21.31) WILD-TYPE     55     82     51     69
D60V7, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                             7                              55
  CLUS_2                            24                              82
  CLUS_3                             9                              51
  CLUS_4                            21                              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q21.31) MUTATED       12      4     11     14      5     15
  DEL PEAK 32(17Q21.31) WILD-TYPE     58     37     29     68     20     45
D60V8, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            12                              58
  CLUS_2                             4                              37
  CLUS_3                            11                              29
  CLUS_4                            14                              68
  CLUS_5                             5                              20
  CLUS_6                            15                              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 33(18Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q21.31) MUTATED       45     72     14
  DEL PEAK 33(18Q21.31) WILD-TYPE    228     62     71
D61V1, multiclass
        clus
vv       DEL PEAK 33(18Q21.31) MUTATED DEL PEAK 33(18Q21.31) WILD-TYPE
  CLUS_1                            45                             228
  CLUS_2                            72                              62
  CLUS_3                            14                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q21.31) MUTATED       27     54     50
  DEL PEAK 33(18Q21.31) WILD-TYPE    133    111    117
D61V2, multiclass
        clus
vv       DEL PEAK 33(18Q21.31) MUTATED DEL PEAK 33(18Q21.31) WILD-TYPE
  CLUS_1                            27                             133
  CLUS_2                            54                             111
  CLUS_3                            50                             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q21.31) MUTATED       21     53     57
  DEL PEAK 33(18Q21.31) WILD-TYPE    125    118    117
D61V3, multiclass
        clus
vv       DEL PEAK 33(18Q21.31) MUTATED DEL PEAK 33(18Q21.31) WILD-TYPE
  CLUS_1                            21                             125
  CLUS_2                            53                             118
  CLUS_3                            57                             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q21.31) MUTATED       32     63     36
  DEL PEAK 33(18Q21.31) WILD-TYPE    139    142     79
D61V4, multiclass
        clus
vv       DEL PEAK 33(18Q21.31) MUTATED DEL PEAK 33(18Q21.31) WILD-TYPE
  CLUS_1                            32                             139
  CLUS_2                            63                             142
  CLUS_3                            36                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q21.31) MUTATED       31     30     68
  DEL PEAK 33(18Q21.31) WILD-TYPE    127    117    115
D61V5, multiclass
        clus
vv       DEL PEAK 33(18Q21.31) MUTATED DEL PEAK 33(18Q21.31) WILD-TYPE
  CLUS_1                            31                             127
  CLUS_2                            30                             117
  CLUS_3                            68                             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(18Q21.31) MUTATED       29     20     20     45     15
  DEL PEAK 33(18Q21.31) WILD-TYPE    118     78     39     83     41
D61V6, multiclass
        clus
vv       DEL PEAK 33(18Q21.31) MUTATED DEL PEAK 33(18Q21.31) WILD-TYPE
  CLUS_1                            29                             118
  CLUS_2                            20                              78
  CLUS_3                            20                              39
  CLUS_4                            45                              83
  CLUS_5                            15                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(18Q21.31) MUTATED        9     41     12     24
  DEL PEAK 33(18Q21.31) WILD-TYPE     53     65     48     66
D61V7, multiclass
        clus
vv       DEL PEAK 33(18Q21.31) MUTATED DEL PEAK 33(18Q21.31) WILD-TYPE
  CLUS_1                             9                              53
  CLUS_2                            41                              65
  CLUS_3                            12                              48
  CLUS_4                            24                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(18Q21.31) MUTATED        9      4     21     33      5     14
  DEL PEAK 33(18Q21.31) WILD-TYPE     61     37     19     49     20     46
D61V8, multiclass
        clus
vv       DEL PEAK 33(18Q21.31) MUTATED DEL PEAK 33(18Q21.31) WILD-TYPE
  CLUS_1                             9                              61
  CLUS_2                             4                              37
  CLUS_3                            21                              19
  CLUS_4                            33                              49
  CLUS_5                             5                              20
  CLUS_6                            14                              46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 34(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(18Q23) MUTATED       48     77     12
  DEL PEAK 34(18Q23) WILD-TYPE    225     57     73
D62V1, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         48                          225
  CLUS_2                         77                           57
  CLUS_3                         12                           73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(18Q23) MUTATED       31     50     56
  DEL PEAK 34(18Q23) WILD-TYPE    129    115    111
D62V2, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         31                          129
  CLUS_2                         50                          115
  CLUS_3                         56                          111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(18Q23) MUTATED       23     49     65
  DEL PEAK 34(18Q23) WILD-TYPE    123    122    109
D62V3, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         23                          123
  CLUS_2                         49                          122
  CLUS_3                         65                          109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(18Q23) MUTATED       37     60     40
  DEL PEAK 34(18Q23) WILD-TYPE    134    145     75
D62V4, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         37                          134
  CLUS_2                         60                          145
  CLUS_3                         40                           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(18Q23) MUTATED       35     35     65
  DEL PEAK 34(18Q23) WILD-TYPE    123    112    118
D62V5, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         35                          123
  CLUS_2                         35                          112
  CLUS_3                         65                          118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(18Q23) MUTATED       29     21     22     46     17
  DEL PEAK 34(18Q23) WILD-TYPE    118     77     37     82     39
D62V6, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         29                          118
  CLUS_2                         21                           77
  CLUS_3                         22                           37
  CLUS_4                         46                           82
  CLUS_5                         17                           39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(18Q23) MUTATED       11     40     11     29
  DEL PEAK 34(18Q23) WILD-TYPE     51     66     49     61
D62V7, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         11                           51
  CLUS_2                         40                           66
  CLUS_3                         11                           49
  CLUS_4                         29                           61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(18Q23) MUTATED       11      3     21     32      6     18
  DEL PEAK 34(18Q23) WILD-TYPE     59     38     19     50     19     42
D62V8, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         11                           59
  CLUS_2                          3                           38
  CLUS_3                         21                           19
  CLUS_4                         32                           50
  CLUS_5                          6                           19
  CLUS_6                         18                           42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 35(19Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.2) MUTATED       14     32      6
  DEL PEAK 35(19Q13.2) WILD-TYPE    259    102     79
D63V1, multiclass
        clus
vv       DEL PEAK 35(19Q13.2) MUTATED DEL PEAK 35(19Q13.2) WILD-TYPE
  CLUS_1                           14                            259
  CLUS_2                           32                            102
  CLUS_3                            6                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.2) MUTATED        6     24     22
  DEL PEAK 35(19Q13.2) WILD-TYPE    154    141    145
D63V2, multiclass
        clus
vv       DEL PEAK 35(19Q13.2) MUTATED DEL PEAK 35(19Q13.2) WILD-TYPE
  CLUS_1                            6                            154
  CLUS_2                           24                            141
  CLUS_3                           22                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.2) MUTATED        6     22     24
  DEL PEAK 35(19Q13.2) WILD-TYPE    140    149    150
D63V3, multiclass
        clus
vv       DEL PEAK 35(19Q13.2) MUTATED DEL PEAK 35(19Q13.2) WILD-TYPE
  CLUS_1                            6                            140
  CLUS_2                           22                            149
  CLUS_3                           24                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.2) MUTATED       11     29     12
  DEL PEAK 35(19Q13.2) WILD-TYPE    160    176    103
D63V4, multiclass
        clus
vv       DEL PEAK 35(19Q13.2) MUTATED DEL PEAK 35(19Q13.2) WILD-TYPE
  CLUS_1                           11                            160
  CLUS_2                           29                            176
  CLUS_3                           12                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.2) MUTATED       12      8     30
  DEL PEAK 35(19Q13.2) WILD-TYPE    146    139    153
D63V5, multiclass
        clus
vv       DEL PEAK 35(19Q13.2) MUTATED DEL PEAK 35(19Q13.2) WILD-TYPE
  CLUS_1                           12                            146
  CLUS_2                            8                            139
  CLUS_3                           30                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(19Q13.2) MUTATED        6      7     13     19      5
  DEL PEAK 35(19Q13.2) WILD-TYPE    141     91     46    109     51
D63V6, multiclass
        clus
vv       DEL PEAK 35(19Q13.2) MUTATED DEL PEAK 35(19Q13.2) WILD-TYPE
  CLUS_1                            6                            141
  CLUS_2                            7                             91
  CLUS_3                           13                             46
  CLUS_4                           19                            109
  CLUS_5                            5                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19Q13.2) MUTATED        2     20      2      9
  DEL PEAK 35(19Q13.2) WILD-TYPE     60     86     58     81
D63V7, multiclass
        clus
vv       DEL PEAK 35(19Q13.2) MUTATED DEL PEAK 35(19Q13.2) WILD-TYPE
  CLUS_1                            2                             60
  CLUS_2                           20                             86
  CLUS_3                            2                             58
  CLUS_4                            9                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.2) MUTATED        1      2      5     18      2      5
  DEL PEAK 35(19Q13.2) WILD-TYPE     69     39     35     64     23     55
D63V8, multiclass
        clus
vv       DEL PEAK 35(19Q13.2) MUTATED DEL PEAK 35(19Q13.2) WILD-TYPE
  CLUS_1                            1                             69
  CLUS_2                            2                             39
  CLUS_3                            5                             35
  CLUS_4                           18                             64
  CLUS_5                            2                             23
  CLUS_6                            5                             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 36(21Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.2) MUTATED       29     22      1
  DEL PEAK 36(21Q22.2) WILD-TYPE    244    112     84
D64V1, multiclass
        clus
vv       DEL PEAK 36(21Q22.2) MUTATED DEL PEAK 36(21Q22.2) WILD-TYPE
  CLUS_1                           29                            244
  CLUS_2                           22                            112
  CLUS_3                            1                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.2) MUTATED       11      9     32
  DEL PEAK 36(21Q22.2) WILD-TYPE    149    156    135
D64V2, multiclass
        clus
vv       DEL PEAK 36(21Q22.2) MUTATED DEL PEAK 36(21Q22.2) WILD-TYPE
  CLUS_1                           11                            149
  CLUS_2                            9                            156
  CLUS_3                           32                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.2) MUTATED       11      7     34
  DEL PEAK 36(21Q22.2) WILD-TYPE    135    164    140
D64V3, multiclass
        clus
vv       DEL PEAK 36(21Q22.2) MUTATED DEL PEAK 36(21Q22.2) WILD-TYPE
  CLUS_1                           11                            135
  CLUS_2                            7                            164
  CLUS_3                           34                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.2) MUTATED       12     15     25
  DEL PEAK 36(21Q22.2) WILD-TYPE    159    190     90
D64V4, multiclass
        clus
vv       DEL PEAK 36(21Q22.2) MUTATED DEL PEAK 36(21Q22.2) WILD-TYPE
  CLUS_1                           12                            159
  CLUS_2                           15                            190
  CLUS_3                           25                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.2) MUTATED       17     10     24
  DEL PEAK 36(21Q22.2) WILD-TYPE    141    137    159
D64V5, multiclass
        clus
vv       DEL PEAK 36(21Q22.2) MUTATED DEL PEAK 36(21Q22.2) WILD-TYPE
  CLUS_1                           17                            141
  CLUS_2                           10                            137
  CLUS_3                           24                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(21Q22.2) MUTATED       11      7     13     15      5
  DEL PEAK 36(21Q22.2) WILD-TYPE    136     91     46    113     51
D64V6, multiclass
        clus
vv       DEL PEAK 36(21Q22.2) MUTATED DEL PEAK 36(21Q22.2) WILD-TYPE
  CLUS_1                           11                            136
  CLUS_2                            7                             91
  CLUS_3                           13                             46
  CLUS_4                           15                            113
  CLUS_5                            5                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(21Q22.2) MUTATED        6     15      6     10
  DEL PEAK 36(21Q22.2) WILD-TYPE     56     91     54     80
D64V7, multiclass
        clus
vv       DEL PEAK 36(21Q22.2) MUTATED DEL PEAK 36(21Q22.2) WILD-TYPE
  CLUS_1                            6                             56
  CLUS_2                           15                             91
  CLUS_3                            6                             54
  CLUS_4                           10                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q22.2) MUTATED        4      2     13      9      3      6
  DEL PEAK 36(21Q22.2) WILD-TYPE     66     39     27     73     22     54
D64V8, multiclass
        clus
vv       DEL PEAK 36(21Q22.2) MUTATED DEL PEAK 36(21Q22.2) WILD-TYPE
  CLUS_1                            4                             66
  CLUS_2                            2                             39
  CLUS_3                           13                             27
  CLUS_4                            9                             73
  CLUS_5                            3                             22
  CLUS_6                            6                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 37(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q22.3) MUTATED       95     49      3
  DEL PEAK 37(21Q22.3) WILD-TYPE    178     85     82
D65V1, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           95                            178
  CLUS_2                           49                             85
  CLUS_3                            3                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q22.3) MUTATED       30     13    104
  DEL PEAK 37(21Q22.3) WILD-TYPE    130    152     63
D65V2, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           30                            130
  CLUS_2                           13                            152
  CLUS_3                          104                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q22.3) MUTATED       26     12    109
  DEL PEAK 37(21Q22.3) WILD-TYPE    120    159     65
D65V3, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           26                            120
  CLUS_2                           12                            159
  CLUS_3                          109                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q22.3) MUTATED       43     21     83
  DEL PEAK 37(21Q22.3) WILD-TYPE    128    184     32
D65V4, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           43                            128
  CLUS_2                           21                            184
  CLUS_3                           83                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q22.3) MUTATED       50     32     63
  DEL PEAK 37(21Q22.3) WILD-TYPE    108    115    120
D65V5, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           50                            108
  CLUS_2                           32                            115
  CLUS_3                           63                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(21Q22.3) MUTATED       44     15     33     39     14
  DEL PEAK 37(21Q22.3) WILD-TYPE    103     83     26     89     42
D65V6, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           44                            103
  CLUS_2                           15                             83
  CLUS_3                           33                             26
  CLUS_4                           39                             89
  CLUS_5                           14                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(21Q22.3) MUTATED       22     30     17     28
  DEL PEAK 37(21Q22.3) WILD-TYPE     40     76     43     62
D65V7, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           22                             40
  CLUS_2                           30                             76
  CLUS_3                           17                             43
  CLUS_4                           28                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q22.3) MUTATED       17      3     26     19     13     19
  DEL PEAK 37(21Q22.3) WILD-TYPE     53     38     14     63     12     41
D65V8, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           17                             53
  CLUS_2                            3                             38
  CLUS_3                           26                             14
  CLUS_4                           19                             63
  CLUS_5                           13                             12
  CLUS_6                           19                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
