[1] "ofn"        "-oTPRAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/15115159/PRAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/15170475/transformed.cor.cli.txt"

nPatients in clinical file=498, in cluster file=425, common to both=425
[1] "Reduce the number of clustering variables from 64 to 62."
[1]  62 425
[1] "SPOP MUTATION ANALYSIS"
[1] 3
  SPOP MUTATED SPOP WILD-TYPE 
            48            377 
  SPOP MUTATED SPOP WILD-TYPE 
            48            377 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            43            382 
  TP53 MUTATED TP53 WILD-TYPE 
            43            382 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            14            411 
  PTEN MUTATED PTEN WILD-TYPE 
            14            411 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              11              414 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              11              414 
[1] "FOXA1 MUTATION ANALYSIS"
[1] 3
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             25             400 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             25             400 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           19           406 
  ATM MUTATED ATM WILD-TYPE 
           19           406 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              11              414 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              11              414 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
             8            417 
  BRAF MUTATED BRAF WILD-TYPE 
             8            417 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
             5            420 
  HRAS MUTATED HRAS WILD-TYPE 
             5            420 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
              9             416 
  KDM6A MUTATED KDM6A WILD-TYPE 
              9             416 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
             5            420 
  IDH1 MUTATED IDH1 WILD-TYPE 
             5            420 
[1] "SMG7 MUTATION ANALYSIS"
[1] 3
  SMG7 MUTATED SMG7 WILD-TYPE 
             7            418 
  SMG7 MUTATED SMG7 WILD-TYPE 
             7            418 
[1] "ZMYM3 MUTATION ANALYSIS"
[1] 3
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
              9             416 
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
              9             416 
[1] "EHHADH MUTATION ANALYSIS"
[1] 3
  EHHADH MUTATED EHHADH WILD-TYPE 
               5              420 
  EHHADH MUTATED EHHADH WILD-TYPE 
               5              420 
[1] "TP53BP1 MUTATION ANALYSIS"
[1] 3
  TP53BP1 MUTATED TP53BP1 WILD-TYPE 
                7               418 
  TP53BP1 MUTATED TP53BP1 WILD-TYPE 
                7               418 
[1] "CNTNAP1 MUTATION ANALYSIS"
[1] 3
  CNTNAP1 MUTATED CNTNAP1 WILD-TYPE 
                7               418 
  CNTNAP1 MUTATED CNTNAP1 WILD-TYPE 
                7               418 
[1] "BMP2K MUTATION ANALYSIS"
[1] 3
  BMP2K MUTATED BMP2K WILD-TYPE 
              6             419 
  BMP2K MUTATED BMP2K WILD-TYPE 
              6             419 
[1] "RPTN MUTATION ANALYSIS"
[1] 3
  RPTN MUTATED RPTN WILD-TYPE 
             6            419 
  RPTN MUTATED RPTN WILD-TYPE 
             6            419 
[1] "TCEB3 MUTATION ANALYSIS"
[1] 3
  TCEB3 MUTATED TCEB3 WILD-TYPE 
              4             421 
  TCEB3 MUTATED TCEB3 WILD-TYPE 
              4             421 
[1] "NTM MUTATION ANALYSIS"
[1] 3
  NTM MUTATED NTM WILD-TYPE 
            6           419 
  NTM MUTATED NTM WILD-TYPE 
            6           419 
[1] "MED12 MUTATION ANALYSIS"
[1] 3
  MED12 MUTATED MED12 WILD-TYPE 
              7             418 
  MED12 MUTATED MED12 WILD-TYPE 
              7             418 
[1] "MED15 MUTATION ANALYSIS"
[1] 3
  MED15 MUTATED MED15 WILD-TYPE 
              6             419 
  MED15 MUTATED MED15 WILD-TYPE 
              6             419 
[1] "ERN1 MUTATION ANALYSIS"
[1] 3
  ERN1 MUTATED ERN1 WILD-TYPE 
             3            422 
  ERN1 MUTATED ERN1 WILD-TYPE 
             3            422 
[1] "LMOD2 MUTATION ANALYSIS"
[1] 3
  LMOD2 MUTATED LMOD2 WILD-TYPE 
              5             420 
  LMOD2 MUTATED LMOD2 WILD-TYPE 
              5             420 
[1] "FAM111A MUTATION ANALYSIS"
[1] 3
  FAM111A MUTATED FAM111A WILD-TYPE 
                3               422 
  FAM111A MUTATED FAM111A WILD-TYPE 
                3               422 
[1] "ZNF709 MUTATION ANALYSIS"
[1] 3
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               5              420 
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               5              420 
[1] "MLLT10 MUTATION ANALYSIS"
[1] 3
  MLLT10 MUTATED MLLT10 WILD-TYPE 
               4              421 
  MLLT10 MUTATED MLLT10 WILD-TYPE 
               4              421 
[1] "TNRC18 MUTATION ANALYSIS"
[1] 3
  TNRC18 MUTATED TNRC18 WILD-TYPE 
               6              419 
  TNRC18 MUTATED TNRC18 WILD-TYPE 
               6              419 
[1] "GAGE2D MUTATION ANALYSIS"
[1] 3
  GAGE2D MUTATED GAGE2D WILD-TYPE 
               3              422 
  GAGE2D MUTATED GAGE2D WILD-TYPE 
               3              422 
[1] "EMG1 MUTATION ANALYSIS"
[1] 3
  EMG1 MUTATED EMG1 WILD-TYPE 
             4            421 
  EMG1 MUTATED EMG1 WILD-TYPE 
             4            421 
[1] "LAMA3 MUTATION ANALYSIS"
[1] 3
  LAMA3 MUTATED LAMA3 WILD-TYPE 
              7             418 
  LAMA3 MUTATED LAMA3 WILD-TYPE 
              7             418 
[1] "RPL11 MUTATION ANALYSIS"
[1] 3
  RPL11 MUTATED RPL11 WILD-TYPE 
              4             421 
  RPL11 MUTATED RPL11 WILD-TYPE 
              4             421 
[1] "ZFHX3 MUTATION ANALYSIS"
[1] 3
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             13             412 
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             13             412 
[1] "MUC17 MUTATION ANALYSIS"
[1] 3
  MUC17 MUTATED MUC17 WILD-TYPE 
             25             400 
  MUC17 MUTATED MUC17 WILD-TYPE 
             25             400 
[1] "CDKN1B MUTATION ANALYSIS"
[1] 3
  CDKN1B MUTATED CDKN1B WILD-TYPE 
               5              420 
  CDKN1B MUTATED CDKN1B WILD-TYPE 
               5              420 
[1] "POM121 MUTATION ANALYSIS"
[1] 3
  POM121 MUTATED POM121 WILD-TYPE 
               3              422 
  POM121 MUTATED POM121 WILD-TYPE 
               3              422 
[1] "ESCO1 MUTATION ANALYSIS"
[1] 3
  ESCO1 MUTATED ESCO1 WILD-TYPE 
              4             421 
  ESCO1 MUTATED ESCO1 WILD-TYPE 
              4             421 
[1] "MYOT MUTATION ANALYSIS"
[1] 3
  MYOT MUTATED MYOT WILD-TYPE 
             4            421 
  MYOT MUTATED MYOT WILD-TYPE 
             4            421 
[1] "L1CAM MUTATION ANALYSIS"
[1] 3
  L1CAM MUTATED L1CAM WILD-TYPE 
              7             418 
  L1CAM MUTATED L1CAM WILD-TYPE 
              7             418 
[1] "FAM47C MUTATION ANALYSIS"
[1] 3
  FAM47C MUTATED FAM47C WILD-TYPE 
               9              416 
  FAM47C MUTATED FAM47C WILD-TYPE 
               9              416 
[1] "CR1L MUTATION ANALYSIS"
[1] 3
  CR1L MUTATED CR1L WILD-TYPE 
             5            420 
  CR1L MUTATED CR1L WILD-TYPE 
             5            420 
[1] "FAM120B MUTATION ANALYSIS"
[1] 3
  FAM120B MUTATED FAM120B WILD-TYPE 
                3               422 
  FAM120B MUTATED FAM120B WILD-TYPE 
                3               422 
[1] "EDC4 MUTATION ANALYSIS"
[1] 3
  EDC4 MUTATED EDC4 WILD-TYPE 
             3            422 
  EDC4 MUTATED EDC4 WILD-TYPE 
             3            422 
[1] "KIRREL MUTATION ANALYSIS"
[1] 3
  KIRREL MUTATED KIRREL WILD-TYPE 
               5              420 
  KIRREL MUTATED KIRREL WILD-TYPE 
               5              420 
[1] "TCERG1 MUTATION ANALYSIS"
[1] 3
  TCERG1 MUTATED TCERG1 WILD-TYPE 
               4              421 
  TCERG1 MUTATED TCERG1 WILD-TYPE 
               4              421 
[1] "SLC16A6 MUTATION ANALYSIS"
[1] 3
  SLC16A6 MUTATED SLC16A6 WILD-TYPE 
                4               421 
  SLC16A6 MUTATED SLC16A6 WILD-TYPE 
                4               421 
[1] "NKX3-1 MUTATION ANALYSIS"
[1] 3
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               5              420 
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               5              420 
[1] "RNF17 MUTATION ANALYSIS"
[1] 3
  RNF17 MUTATED RNF17 WILD-TYPE 
              3             422 
  RNF17 MUTATED RNF17 WILD-TYPE 
              3             422 
[1] "KYNU MUTATION ANALYSIS"
[1] 3
  KYNU MUTATED KYNU WILD-TYPE 
             3            422 
  KYNU MUTATED KYNU WILD-TYPE 
             3            422 
[1] "LARP1 MUTATION ANALYSIS"
[1] 3
  LARP1 MUTATED LARP1 WILD-TYPE 
              4             421 
  LARP1 MUTATED LARP1 WILD-TYPE 
              4             421 
[1] "CDK12 MUTATION ANALYSIS"
[1] 3
  CDK12 MUTATED CDK12 WILD-TYPE 
              8             417 
  CDK12 MUTATED CDK12 WILD-TYPE 
              8             417 
[1] "ACPT MUTATION ANALYSIS"
[1] 3
  ACPT MUTATED ACPT WILD-TYPE 
             3            422 
  ACPT MUTATED ACPT WILD-TYPE 
             3            422 
[1] "AP4B1 MUTATION ANALYSIS"
[1] 3
  AP4B1 MUTATED AP4B1 WILD-TYPE 
              5             420 
  AP4B1 MUTATED AP4B1 WILD-TYPE 
              5             420 
[1] "RAG1 MUTATION ANALYSIS"
[1] 3
  RAG1 MUTATED RAG1 WILD-TYPE 
             9            416 
  RAG1 MUTATED RAG1 WILD-TYPE 
             9            416 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
            9           416 
  APC MUTATED APC WILD-TYPE 
            9           416 
[1] "MSLNL MUTATION ANALYSIS"
[1] 3
  MSLNL MUTATED MSLNL WILD-TYPE 
              4             421 
  MSLNL MUTATED MSLNL WILD-TYPE 
              4             421 
[1] "GAB2 MUTATION ANALYSIS"
[1] 3
  GAB2 MUTATED GAB2 WILD-TYPE 
             5            420 
  GAB2 MUTATED GAB2 WILD-TYPE 
             5            420 
[1] "DNMT3B MUTATION ANALYSIS"
[1] 3
  DNMT3B MUTATED DNMT3B WILD-TYPE 
               4              421 
  DNMT3B MUTATED DNMT3B WILD-TYPE 
               4              421 
[1] "NCKAP1L MUTATION ANALYSIS"
[1] 3
  NCKAP1L MUTATED NCKAP1L WILD-TYPE 
                5               420 
  NCKAP1L MUTATED NCKAP1L WILD-TYPE 
                5               420 
[1] "PRTFDC1 MUTATION ANALYSIS"
[1] 3
  PRTFDC1 MUTATED PRTFDC1 WILD-TYPE 
                3               422 
  PRTFDC1 MUTATED PRTFDC1 WILD-TYPE 
                3               422 
[1] "PCSK5 MUTATION ANALYSIS"
[1] 3
  PCSK5 MUTATED PCSK5 WILD-TYPE 
              6             419 
  PCSK5 MUTATED PCSK5 WILD-TYPE 
              6             419 
[1] "ITGA2B MUTATION ANALYSIS"
[1] 3
  ITGA2B MUTATED ITGA2B WILD-TYPE 
               4              421 
  ITGA2B MUTATED ITGA2B WILD-TYPE 
               4              421 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 425 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 425 columns, 0 survival variables, and 8 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = SPOP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED        6     13     27
  SPOP WILD-TYPE    240     87     47
D1V1, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            6            240
  CLUS_2           13             87
  CLUS_3           27             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED        8     39      1
  SPOP WILD-TYPE    134     93    150
D1V2, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            8            134
  CLUS_2           39             93
  CLUS_3            1            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED        8     40      0
  SPOP WILD-TYPE    120    103    153
D1V3, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            8            120
  CLUS_2           40            103
  CLUS_3            0            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED        7     41      0
  SPOP WILD-TYPE    146    126    104
D1V4, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            7            146
  CLUS_2           41            126
  CLUS_3            0            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED       14     14     20
  SPOP WILD-TYPE    130    109    134
D1V5, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1           14            130
  CLUS_2           14            109
  CLUS_3           20            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOP MUTATED       13      9      1     17      8
  SPOP WILD-TYPE    123     72     51     79     48
D1V6, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1           13            123
  CLUS_2            9             72
  CLUS_3            1             51
  CLUS_4           17             79
  CLUS_5            8             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOP MUTATED        4     11      3     11
  SPOP WILD-TYPE     55     63     42     69
D1V7, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            4             55
  CLUS_2           11             63
  CLUS_3            3             42
  CLUS_4           11             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPOP MUTATED        6      5      1     10      0      7
  SPOP WILD-TYPE     58     24     20     50     25     52
D1V8, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            6             58
  CLUS_2            5             24
  CLUS_3            1             20
  CLUS_4           10             50
  CLUS_5            0             25
  CLUS_6            7             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       12     29      2
  TP53 WILD-TYPE    234     71     72
D2V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           12            234
  CLUS_2           29             71
  CLUS_3            2             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       10      8     25
  TP53 WILD-TYPE    132    124    126
D2V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           10            132
  CLUS_2            8            124
  CLUS_3           25            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        6      9     28
  TP53 WILD-TYPE    122    134    125
D2V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            6            122
  CLUS_2            9            134
  CLUS_3           28            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        9     10     24
  TP53 WILD-TYPE    144    157     80
D2V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            9            144
  CLUS_2           10            157
  CLUS_3           24             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       14     11     18
  TP53 WILD-TYPE    130    112    136
D2V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           14            130
  CLUS_2           11            112
  CLUS_3           18            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       10      4     10     12      7
  TP53 WILD-TYPE    126     77     42     84     49
D2V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           10            126
  CLUS_2            4             77
  CLUS_3           10             42
  CLUS_4           12             84
  CLUS_5            7             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        2     10      6     10
  TP53 WILD-TYPE     57     64     39     70
D2V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            2             57
  CLUS_2           10             64
  CLUS_3            6             39
  CLUS_4           10             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED        6      1      6      8      0      7
  TP53 WILD-TYPE     58     28     15     52     25     52
D2V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            6             58
  CLUS_2            1             28
  CLUS_3            6             15
  CLUS_4            8             52
  CLUS_5            0             25
  CLUS_6            7             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        7      5      2
  PTEN WILD-TYPE    239     95     72
D3V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            7            239
  CLUS_2            5             95
  CLUS_3            2             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        2      4      8
  PTEN WILD-TYPE    140    128    143
D3V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            140
  CLUS_2            4            128
  CLUS_3            8            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        1      5      8
  PTEN WILD-TYPE    127    138    145
D3V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1            127
  CLUS_2            5            138
  CLUS_3            8            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        1      5      8
  PTEN WILD-TYPE    152    162     96
D3V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1            152
  CLUS_2            5            162
  CLUS_3            8             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        4      3      7
  PTEN WILD-TYPE    140    120    147
D3V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4            140
  CLUS_2            3            120
  CLUS_3            7            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        5      1      0      4      4
  PTEN WILD-TYPE    131     80     52     92     52
D3V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            5            131
  CLUS_2            1             80
  CLUS_3            0             52
  CLUS_4            4             92
  CLUS_5            4             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        1      5      1      3
  PTEN WILD-TYPE     58     69     44     77
D3V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             58
  CLUS_2            5             69
  CLUS_3            1             44
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTEN MUTATED        1      0      0      6      0      3
  PTEN WILD-TYPE     63     29     21     54     25     56
D3V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             63
  CLUS_2            0             29
  CLUS_3            0             21
  CLUS_4            6             54
  CLUS_5            0             25
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = CTNNB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        4      3      4
  CTNNB1 WILD-TYPE    242     97     70
D4V1, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              4              242
  CLUS_2              3               97
  CLUS_3              4               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        0      5      6
  CTNNB1 WILD-TYPE    142    127    145
D4V2, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0              142
  CLUS_2              5              127
  CLUS_3              6              145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        1      5      5
  CTNNB1 WILD-TYPE    127    138    148
D4V3, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1              127
  CLUS_2              5              138
  CLUS_3              5              148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        2      4      5
  CTNNB1 WILD-TYPE    151    163     99
D4V4, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2              151
  CLUS_2              4              163
  CLUS_3              5               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        1      3      7
  CTNNB1 WILD-TYPE    143    120    147
D4V5, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1              143
  CLUS_2              3              120
  CLUS_3              7              147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        1      0      1      6      3
  CTNNB1 WILD-TYPE    135     81     51     90     53
D4V6, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              0               81
  CLUS_3              1               51
  CLUS_4              6               90
  CLUS_5              3               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        0      4      0      3
  CTNNB1 WILD-TYPE     59     70     45     77
D4V7, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0               59
  CLUS_2              4               70
  CLUS_3              0               45
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNNB1 MUTATED        0      0      0      5      0      2
  CTNNB1 WILD-TYPE     64     29     21     55     25     57
D4V8, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0               64
  CLUS_2              0               29
  CLUS_3              0               21
  CLUS_4              5               55
  CLUS_5              0               25
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = FOXA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        5      9     10
  FOXA1 WILD-TYPE    241     91     64
D5V1, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             5             241
  CLUS_2             9              91
  CLUS_3            10              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        2     22      1
  FOXA1 WILD-TYPE    140    110    150
D5V2, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2             140
  CLUS_2            22             110
  CLUS_3             1             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        4     20      1
  FOXA1 WILD-TYPE    124    123    152
D5V3, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             4             124
  CLUS_2            20             123
  CLUS_3             1             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        3     21      1
  FOXA1 WILD-TYPE    150    146    103
D5V4, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             3             150
  CLUS_2            21             146
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        4      4     17
  FOXA1 WILD-TYPE    140    119    137
D5V5, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             4             140
  CLUS_2             4             119
  CLUS_3            17             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXA1 MUTATED        2      7      1     11      4
  FOXA1 WILD-TYPE    134     74     51     85     52
D5V6, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             7              74
  CLUS_3             1              51
  CLUS_4            11              85
  CLUS_5             4              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        2      2      1      6
  FOXA1 WILD-TYPE     57     72     44     74
D5V7, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             2              72
  CLUS_3             1              44
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXA1 MUTATED        2      1      0      3      0      5
  FOXA1 WILD-TYPE     62     28     21     57     25     54
D5V8, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2              62
  CLUS_2             1              28
  CLUS_3             0              21
  CLUS_4             3              57
  CLUS_5             0              25
  CLUS_6             5              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = ATM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        5     10      4
  ATM WILD-TYPE    241     90     70
D6V1, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           5           241
  CLUS_2          10            90
  CLUS_3           4            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        3      9      7
  ATM WILD-TYPE    139    123    144
D6V2, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           139
  CLUS_2           9           123
  CLUS_3           7           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        4      9      6
  ATM WILD-TYPE    124    134    147
D6V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           4           124
  CLUS_2           9           134
  CLUS_3           6           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        3     12      4
  ATM WILD-TYPE    150    155    100
D6V4, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           150
  CLUS_2          12           155
  CLUS_3           4           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        2      8      9
  ATM WILD-TYPE    142    115    145
D6V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2           142
  CLUS_2           8           115
  CLUS_3           9           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        3      7      2      4      3
  ATM WILD-TYPE    133     74     50     92     53
D6V6, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           133
  CLUS_2           7            74
  CLUS_3           2            50
  CLUS_4           4            92
  CLUS_5           3            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        2      3      3      5
  ATM WILD-TYPE     57     71     42     75
D6V7, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2            57
  CLUS_2           3            71
  CLUS_3           3            42
  CLUS_4           5            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATM MUTATED        1      3      2      3      1      3
  ATM WILD-TYPE     63     26     19     57     24     56
D6V8, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           1            63
  CLUS_2           3            26
  CLUS_3           2            19
  CLUS_4           3            57
  CLUS_5           1            24
  CLUS_6           3            56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        6      5      0
  PIK3CA WILD-TYPE    240     95     74
D7V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              6              240
  CLUS_2              5               95
  CLUS_3              0               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        0      3      8
  PIK3CA WILD-TYPE    142    129    143
D7V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0              142
  CLUS_2              3              129
  CLUS_3              8              143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        1      3      7
  PIK3CA WILD-TYPE    127    140    146
D7V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1              127
  CLUS_2              3              140
  CLUS_3              7              146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        1      3      7
  PIK3CA WILD-TYPE    152    164     97
D7V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1              152
  CLUS_2              3              164
  CLUS_3              7               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        2      2      7
  PIK3CA WILD-TYPE    142    121    147
D7V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2              142
  CLUS_2              2              121
  CLUS_3              7              147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        1      0      2      5      3
  PIK3CA WILD-TYPE    135     81     50     91     53
D7V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1              135
  CLUS_2              0               81
  CLUS_3              2               50
  CLUS_4              5               91
  CLUS_5              3               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        1      3      0      4
  PIK3CA WILD-TYPE     58     71     45     76
D7V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1               58
  CLUS_2              3               71
  CLUS_3              0               45
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CA MUTATED        0      0      1      4      1      2
  PIK3CA WILD-TYPE     64     29     20     56     24     57
D7V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               64
  CLUS_2              0               29
  CLUS_3              1               20
  CLUS_4              4               56
  CLUS_5              1               24
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = BRAF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        4      1      3
  BRAF WILD-TYPE    242     99     71
D8V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            4            242
  CLUS_2            1             99
  CLUS_3            3             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        3      5      0
  BRAF WILD-TYPE    139    127    151
D8V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            3            139
  CLUS_2            5            127
  CLUS_3            0            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        2      5      1
  BRAF WILD-TYPE    126    138    152
D8V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2            126
  CLUS_2            5            138
  CLUS_3            1            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        2      6      0
  BRAF WILD-TYPE    151    161    104
D8V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2            151
  CLUS_2            6            161
  CLUS_3            0            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        3      2      3
  BRAF WILD-TYPE    141    121    151
D8V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            3            141
  CLUS_2            2            121
  CLUS_3            3            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRAF MUTATED        4      1      0      3      0
  BRAF WILD-TYPE    132     80     52     93     56
D8V6, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            4            132
  CLUS_2            1             80
  CLUS_3            0             52
  CLUS_4            3             93
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        0      2      1      1
  BRAF WILD-TYPE     59     72     44     79
D8V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0             59
  CLUS_2            2             72
  CLUS_3            1             44
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRAF MUTATED        0      0      1      2      0      1
  BRAF WILD-TYPE     64     29     20     58     25     58
D8V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0             64
  CLUS_2            0             29
  CLUS_3            1             20
  CLUS_4            2             58
  CLUS_5            0             25
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = HRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        4      1      0
  HRAS WILD-TYPE    242     99     74
D9V1, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            4            242
  CLUS_2            1             99
  CLUS_3            0             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        3      1      1
  HRAS WILD-TYPE    139    131    150
D9V2, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            3            139
  CLUS_2            1            131
  CLUS_3            1            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        2      2      1
  HRAS WILD-TYPE    126    141    152
D9V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2            126
  CLUS_2            2            141
  CLUS_3            1            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        2      2      1
  HRAS WILD-TYPE    151    165    103
D9V4, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2            151
  CLUS_2            2            165
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        2      2      1
  HRAS WILD-TYPE    142    121    153
D9V5, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2            142
  CLUS_2            2            121
  CLUS_3            1            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRAS MUTATED        2      0      0      3      0
  HRAS WILD-TYPE    134     81     52     93     56
D9V6, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2            134
  CLUS_2            0             81
  CLUS_3            0             52
  CLUS_4            3             93
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        1      0      2      1
  HRAS WILD-TYPE     58     74     43     79
D9V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             58
  CLUS_2            0             74
  CLUS_3            2             43
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HRAS MUTATED        2      0      0      0      0      2
  HRAS WILD-TYPE     62     29     21     60     25     57
D9V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             62
  CLUS_2            0             29
  CLUS_3            0             21
  CLUS_4            0             60
  CLUS_5            0             25
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = KDM6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        2      2      5
  KDM6A WILD-TYPE    244     98     69
D10V1, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2             244
  CLUS_2             2              98
  CLUS_3             5              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        2      6      1
  KDM6A WILD-TYPE    140    126    150
D10V2, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2             140
  CLUS_2             6             126
  CLUS_3             1             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        0      8      1
  KDM6A WILD-TYPE    128    135    152
D10V3, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0             128
  CLUS_2             8             135
  CLUS_3             1             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        1      7      1
  KDM6A WILD-TYPE    152    160    103
D10V4, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1             152
  CLUS_2             7             160
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        3      4      2
  KDM6A WILD-TYPE    141    119    152
D10V5, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             3             141
  CLUS_2             4             119
  CLUS_3             2             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        2      5      0      1      1
  KDM6A WILD-TYPE    134     76     52     95     55
D10V6, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2             134
  CLUS_2             5              76
  CLUS_3             0              52
  CLUS_4             1              95
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        0      0      1      3
  KDM6A WILD-TYPE     59     74     44     77
D10V7, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              59
  CLUS_2             0              74
  CLUS_3             1              44
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM6A MUTATED        0      3      0      0      0      1
  KDM6A WILD-TYPE     64     26     21     60     25     58
D10V8, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              64
  CLUS_2             3              26
  CLUS_3             0              21
  CLUS_4             0              60
  CLUS_5             0              25
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = IDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        1      0      4
  IDH1 WILD-TYPE    245    100     70
D11V1, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1            245
  CLUS_2            0            100
  CLUS_3            4             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        0      5      0
  IDH1 WILD-TYPE    142    127    151
D11V2, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0            142
  CLUS_2            5            127
  CLUS_3            0            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        0      5      0
  IDH1 WILD-TYPE    128    138    153
D11V3, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0            128
  CLUS_2            5            138
  CLUS_3            0            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        0      5      0
  IDH1 WILD-TYPE    153    162    104
D11V4, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0            153
  CLUS_2            5            162
  CLUS_3            0            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        0      3      2
  IDH1 WILD-TYPE    144    120    152
D11V5, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0            144
  CLUS_2            3            120
  CLUS_3            2            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH1 MUTATED        0      3      0      2      0
  IDH1 WILD-TYPE    136     78     52     94     56
D11V6, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            3             78
  CLUS_3            0             52
  CLUS_4            2             94
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        1      1      1      1
  IDH1 WILD-TYPE     58     73     44     79
D11V7, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             58
  CLUS_2            1             73
  CLUS_3            1             44
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDH1 MUTATED        0      2      0      1      1      0
  IDH1 WILD-TYPE     64     27     21     59     24     59
D11V8, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             64
  CLUS_2            2             27
  CLUS_3            0             21
  CLUS_4            1             59
  CLUS_5            1             24
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = SMG7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        5      1      1
  SMG7 WILD-TYPE    241     99     73
D12V1, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            5            241
  CLUS_2            1             99
  CLUS_3            1             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        1      4      2
  SMG7 WILD-TYPE    141    128    149
D12V2, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            1            141
  CLUS_2            4            128
  CLUS_3            2            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        0      5      2
  SMG7 WILD-TYPE    128    138    151
D12V3, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0            128
  CLUS_2            5            138
  CLUS_3            2            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        0      7      0
  SMG7 WILD-TYPE    153    160    104
D12V4, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0            153
  CLUS_2            7            160
  CLUS_3            0            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        0      2      5
  SMG7 WILD-TYPE    144    121    149
D12V5, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0            144
  CLUS_2            2            121
  CLUS_3            5            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMG7 MUTATED        0      2      0      3      2
  SMG7 WILD-TYPE    136     79     52     93     54
D12V6, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2             79
  CLUS_3            0             52
  CLUS_4            3             93
  CLUS_5            2             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        1      1      1      1
  SMG7 WILD-TYPE     58     73     44     79
D12V7, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            1             58
  CLUS_2            1             73
  CLUS_3            1             44
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMG7 MUTATED        0      1      0      2      0      1
  SMG7 WILD-TYPE     64     28     21     58     25     58
D12V8, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0             64
  CLUS_2            1             28
  CLUS_3            0             21
  CLUS_4            2             58
  CLUS_5            0             25
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = ZMYM3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        6      1      2
  ZMYM3 WILD-TYPE    240     99     72
D13V1, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             6             240
  CLUS_2             1              99
  CLUS_3             2              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        1      4      4
  ZMYM3 WILD-TYPE    141    128    147
D13V2, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             1             141
  CLUS_2             4             128
  CLUS_3             4             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        2      1      6
  ZMYM3 WILD-TYPE    126    142    147
D13V3, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             2             126
  CLUS_2             1             142
  CLUS_3             6             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        1      4      4
  ZMYM3 WILD-TYPE    152    163    100
D13V4, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             1             152
  CLUS_2             4             163
  CLUS_3             4             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        2      1      6
  ZMYM3 WILD-TYPE    142    122    148
D13V5, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             2             142
  CLUS_2             1             122
  CLUS_3             6             148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM3 MUTATED        3      1      2      3      0
  ZMYM3 WILD-TYPE    133     80     50     93     56
D13V6, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             3             133
  CLUS_2             1              80
  CLUS_3             2              50
  CLUS_4             3              93
  CLUS_5             0              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED        2      4      1      0
  ZMYM3 WILD-TYPE     57     70     44     80
D13V7, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             4              70
  CLUS_3             1              44
  CLUS_4             0              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYM3 MUTATED        1      0      0      4      2      0
  ZMYM3 WILD-TYPE     63     29     21     56     23     59
D13V8, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             1              63
  CLUS_2             0              29
  CLUS_3             0              21
  CLUS_4             4              56
  CLUS_5             2              23
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = EHHADH MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EHHADH MUTATED        4      0      1
  EHHADH WILD-TYPE    242    100     73
D14V1, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              4              242
  CLUS_2              0              100
  CLUS_3              1               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EHHADH MUTATED        1      2      2
  EHHADH WILD-TYPE    141    130    149
D14V2, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              1              141
  CLUS_2              2              130
  CLUS_3              2              149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EHHADH MUTATED        2      1      2
  EHHADH WILD-TYPE    126    142    151
D14V3, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              2              126
  CLUS_2              1              142
  CLUS_3              2              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EHHADH MUTATED        2      2      1
  EHHADH WILD-TYPE    151    165    103
D14V4, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              2              151
  CLUS_2              2              165
  CLUS_3              1              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EHHADH MUTATED        1      1      3
  EHHADH WILD-TYPE    143    122    151
D14V5, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              1              143
  CLUS_2              1              122
  CLUS_3              3              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHHADH MUTATED        1      0      1      3      0
  EHHADH WILD-TYPE    135     81     51     93     56
D14V6, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              1              135
  CLUS_2              0               81
  CLUS_3              1               51
  CLUS_4              3               93
  CLUS_5              0               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        0      1      0      1
  EHHADH WILD-TYPE     59     73     45     79
D14V7, multiclass
[1] "Remove cluster labels:" "EHHADH MUTATED"        
clus
  EHHADH MUTATED EHHADH WILD-TYPE 
               2              256 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772       TCGA-CH-5789 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494       TCGA-EJ-5497 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512       TCGA-EJ-5514 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5522       TCGA-EJ-5524 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A8O0 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6347       TCGA-G9-6351 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6353       TCGA-G9-6354       TCGA-G9-6361       TCGA-G9-6365 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6369       TCGA-G9-6377       TCGA-G9-6379       TCGA-G9-6498 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-7522       TCGA-G9-7523       TCGA-H9-7775       TCGA-H9-A6BX 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7075       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7081 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7210       TCGA-HC-7212       TCGA-HC-7213 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7232       TCGA-HC-7233 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7820       TCGA-HC-7821 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261       TCGA-HC-8262 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266       TCGA-HC-A4ZV 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AN 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A6AP       TCGA-HC-A6HX       TCGA-HC-A6HY       TCGA-HC-A76W 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168       TCGA-HI-7169 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198       TCGA-J4-8200 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q       TCGA-J4-A67R 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3       TCGA-J4-A83I 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L       TCGA-J4-A83M 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J9-A52B       TCGA-J9-A52C       TCGA-J9-A52E       TCGA-J9-A8CK 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J9-A8CL       TCGA-J9-A8CM       TCGA-KC-A4BL       TCGA-KC-A4BO 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KC-A4BR       TCGA-KC-A4BV       TCGA-KC-A7F3       TCGA-KC-A7FA 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59Y       TCGA-KK-A59Z 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A5A1       TCGA-KK-A6DY       TCGA-KK-A6E0       TCGA-KK-A6E1 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A6E2       TCGA-KK-A6E4       TCGA-KK-A6E5       TCGA-KK-A6E7 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A7AQ       TCGA-KK-A7B0       TCGA-KK-A7B1       TCGA-KK-A7B2 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A7B3       TCGA-KK-A7B4       TCGA-KK-A8I5       TCGA-KK-A8I6 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8I9       TCGA-KK-A8IA 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8IB       TCGA-KK-A8IC       TCGA-KK-A8IG       TCGA-KK-A8IH 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8IJ       TCGA-KK-A8IL       TCGA-KK-A8IM       TCGA-M7-A720 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-M7-A723       TCGA-M7-A725       TCGA-QU-A6IM       TCGA-QU-A6IO 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-V1-A8MG       TCGA-V1-A8MJ 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL       TCGA-V1-A8WV 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I       TCGA-VN-A88K 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872       TCGA-VP-A878 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E       TCGA-VP-A87K 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR       TCGA-XJ-A83H 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ       TCGA-XQ-A8TB 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK       TCGA-YL-A8HO 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH       TCGA-YL-A8SJ 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR       TCGA-YL-A9WH 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY       TCGA-ZG-A8QZ 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EHHADH MUTATED        0      0      0      1      0      1
  EHHADH WILD-TYPE     64     29     21     59     25     58
D14V8, multiclass
[1] "Remove cluster labels:" "EHHADH MUTATED"        
clus
  EHHADH MUTATED EHHADH WILD-TYPE 
               2              256 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772       TCGA-CH-5789 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494       TCGA-EJ-5497 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512       TCGA-EJ-5514 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5522       TCGA-EJ-5524 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A8O0 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6347       TCGA-G9-6351 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6353       TCGA-G9-6354       TCGA-G9-6361       TCGA-G9-6365 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6369       TCGA-G9-6377       TCGA-G9-6379       TCGA-G9-6498 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-7522       TCGA-G9-7523       TCGA-H9-7775       TCGA-H9-A6BX 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7075       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7081 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7210       TCGA-HC-7212       TCGA-HC-7213 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7232       TCGA-HC-7233 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7820       TCGA-HC-7821 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261       TCGA-HC-8262 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266       TCGA-HC-A4ZV 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AN 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A6AP       TCGA-HC-A6HX       TCGA-HC-A6HY       TCGA-HC-A76W 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168       TCGA-HI-7169 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198       TCGA-J4-8200 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q       TCGA-J4-A67R 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3       TCGA-J4-A83I 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L       TCGA-J4-A83M 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J9-A52B       TCGA-J9-A52C       TCGA-J9-A52E       TCGA-J9-A8CK 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J9-A8CL       TCGA-J9-A8CM       TCGA-KC-A4BL       TCGA-KC-A4BO 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KC-A4BR       TCGA-KC-A4BV       TCGA-KC-A7F3       TCGA-KC-A7FA 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59Y       TCGA-KK-A59Z 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A5A1       TCGA-KK-A6DY       TCGA-KK-A6E0       TCGA-KK-A6E1 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A6E2       TCGA-KK-A6E4       TCGA-KK-A6E5       TCGA-KK-A6E7 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A7AQ       TCGA-KK-A7B0       TCGA-KK-A7B1       TCGA-KK-A7B2 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A7B3       TCGA-KK-A7B4       TCGA-KK-A8I5       TCGA-KK-A8I6 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8I9       TCGA-KK-A8IA 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8IB       TCGA-KK-A8IC       TCGA-KK-A8IG       TCGA-KK-A8IH 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8IJ       TCGA-KK-A8IL       TCGA-KK-A8IM       TCGA-M7-A720 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-M7-A723       TCGA-M7-A725       TCGA-QU-A6IM       TCGA-QU-A6IO 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-V1-A8MG       TCGA-V1-A8MJ 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL       TCGA-V1-A8WV 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I       TCGA-VN-A88K 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872       TCGA-VP-A878 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E       TCGA-VP-A87K 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR       TCGA-XJ-A83H 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ       TCGA-XQ-A8TB 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK       TCGA-YL-A8HO 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH       TCGA-YL-A8SJ 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR       TCGA-YL-A9WH 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY       TCGA-ZG-A8QZ 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 

Clustering(15) Variable = TP53BP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP1 MUTATED        2      2      3
  TP53BP1 WILD-TYPE    244     98     71
D15V1, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               2               244
  CLUS_2               2                98
  CLUS_3               3                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP1 MUTATED        3      3      1
  TP53BP1 WILD-TYPE    139    129    150
D15V2, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               3               139
  CLUS_2               3               129
  CLUS_3               1               150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP1 MUTATED        2      3      2
  TP53BP1 WILD-TYPE    126    140    151
D15V3, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               2               126
  CLUS_2               3               140
  CLUS_3               2               151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP1 MUTATED        2      5      0
  TP53BP1 WILD-TYPE    151    162    104
D15V4, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               2               151
  CLUS_2               5               162
  CLUS_3               0               104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP1 MUTATED        2      2      3
  TP53BP1 WILD-TYPE    142    121    151
D15V5, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               2               142
  CLUS_2               2               121
  CLUS_3               3               151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP1 MUTATED        2      2      0      3      0
  TP53BP1 WILD-TYPE    134     79     52     93     56
D15V6, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               2               134
  CLUS_2               2                79
  CLUS_3               0                52
  CLUS_4               3                93
  CLUS_5               0                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53BP1 MUTATED        0      3      1      2
  TP53BP1 WILD-TYPE     59     71     44     78
D15V7, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               0                59
  CLUS_2               3                71
  CLUS_3               1                44
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53BP1 MUTATED        2      2      0      2      0      0
  TP53BP1 WILD-TYPE     62     27     21     58     25     59
D15V8, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               2                62
  CLUS_2               2                27
  CLUS_3               0                21
  CLUS_4               2                58
  CLUS_5               0                25
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = CNTNAP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP1 MUTATED        2      3      1
  CNTNAP1 WILD-TYPE    244     97     73
D16V1, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               2               244
  CLUS_2               3                97
  CLUS_3               1                73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP1 MUTATED        1      4      2
  CNTNAP1 WILD-TYPE    141    128    149
D16V2, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               1               141
  CLUS_2               4               128
  CLUS_3               2               149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP1 MUTATED        2      4      1
  CNTNAP1 WILD-TYPE    126    139    152
D16V3, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               2               126
  CLUS_2               4               139
  CLUS_3               1               152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP1 MUTATED        2      4      1
  CNTNAP1 WILD-TYPE    151    163    103
D16V4, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               2               151
  CLUS_2               4               163
  CLUS_3               1               103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP1 MUTATED        3      1      3
  CNTNAP1 WILD-TYPE    141    122    151
D16V5, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               3               141
  CLUS_2               1               122
  CLUS_3               3               151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNTNAP1 MUTATED        0      0      1      4      2
  CNTNAP1 WILD-TYPE    136     81     51     92     54
D16V6, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               0               136
  CLUS_2               0                81
  CLUS_3               1                51
  CLUS_4               4                92
  CLUS_5               2                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP1 MUTATED        0      0      0      2
  CNTNAP1 WILD-TYPE     59     74     45     78
D16V7, multiclass
[1] "Remove cluster labels:" "CNTNAP1 MUTATED"       
clus
  CNTNAP1 MUTATED CNTNAP1 WILD-TYPE 
                2               256 
       TCGA-2A-A8VL        TCGA-2A-A8VV        TCGA-2A-A8W3        TCGA-CH-5737 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-CH-5738        TCGA-CH-5739        TCGA-CH-5741        TCGA-CH-5746 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-CH-5750        TCGA-CH-5752        TCGA-CH-5762        TCGA-CH-5763 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-CH-5764        TCGA-CH-5766        TCGA-CH-5769        TCGA-CH-5772 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-CH-5789        TCGA-CH-5792        TCGA-CH-5794        TCGA-EJ-5494 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-5497        TCGA-EJ-5504        TCGA-EJ-5506        TCGA-EJ-5512 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-5514        TCGA-EJ-5516        TCGA-EJ-5517        TCGA-EJ-5522 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-5524        TCGA-EJ-5525        TCGA-EJ-5526        TCGA-EJ-5527 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-5542        TCGA-EJ-7115        TCGA-EJ-7123        TCGA-EJ-7125 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-7314        TCGA-EJ-7315        TCGA-EJ-7317        TCGA-EJ-7321 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-7327        TCGA-EJ-7328        TCGA-EJ-7330        TCGA-EJ-7331 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-7782        TCGA-EJ-7783        TCGA-EJ-7784        TCGA-EJ-7785 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-7786        TCGA-EJ-7788        TCGA-EJ-7791        TCGA-EJ-7792 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-7793        TCGA-EJ-7794        TCGA-EJ-7797        TCGA-EJ-8468 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-8469        TCGA-EJ-8470        TCGA-EJ-8472        TCGA-EJ-8474 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-A46B        TCGA-EJ-A46D        TCGA-EJ-A46E        TCGA-EJ-A46G 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-A46H        TCGA-EJ-A46I        TCGA-EJ-A65F        TCGA-EJ-A65J 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-A6RA        TCGA-EJ-A6RC        TCGA-EJ-A7NH        TCGA-EJ-A7NJ 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-A7NK        TCGA-EJ-A7NM        TCGA-EJ-A8FN        TCGA-EJ-A8FO 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-A8FP        TCGA-EJ-A8FU        TCGA-FC-7708        TCGA-FC-7961 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-FC-A8O0        TCGA-G9-6329        TCGA-G9-6333        TCGA-G9-6336 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-G9-6338        TCGA-G9-6339        TCGA-G9-6342        TCGA-G9-6347 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-G9-6351        TCGA-G9-6353        TCGA-G9-6354        TCGA-G9-6361 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-G9-6365        TCGA-G9-6369        TCGA-G9-6377        TCGA-G9-6379 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-G9-6498        TCGA-G9-6499        TCGA-G9-7510        TCGA-G9-7519 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-G9-7521        TCGA-G9-7522        TCGA-G9-7523        TCGA-H9-7775 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-H9-A6BX        TCGA-HC-7075        TCGA-HC-7078        TCGA-HC-7079 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7081        TCGA-HC-7209        TCGA-HC-7210        TCGA-HC-7212 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7213        TCGA-HC-7230        TCGA-HC-7231        TCGA-HC-7232 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7233        TCGA-HC-7737        TCGA-HC-7740        TCGA-HC-7742 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7744        TCGA-HC-7745        TCGA-HC-7747        TCGA-HC-7748 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7749        TCGA-HC-7750        TCGA-HC-7817        TCGA-HC-7818 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7820        TCGA-HC-7821        TCGA-HC-8258        TCGA-HC-8260 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-8261        TCGA-HC-8262        TCGA-HC-8264        TCGA-HC-A4ZV 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-A631        TCGA-HC-A632        TCGA-HC-A6AL        TCGA-HC-A6AN 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-A6AP        TCGA-HC-A6HX        TCGA-HC-A6HY        TCGA-HC-A76W 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-A8D0        TCGA-HC-A8D1        TCGA-HI-7168        TCGA-HI-7169 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HI-7170        TCGA-HI-7171        TCGA-J4-8198        TCGA-J4-8200 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-J4-A67L        TCGA-J4-A67M        TCGA-J4-A67Q        TCGA-J4-A67R 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-J4-A67T        TCGA-J4-A6G1        TCGA-J4-A6G3        TCGA-J4-A83I 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-J4-A83J        TCGA-J4-A83K        TCGA-J4-A83L        TCGA-J4-A83M 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-J9-A52B        TCGA-J9-A52C        TCGA-J9-A52E        TCGA-J9-A8CK 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-J9-A8CL        TCGA-J9-A8CM        TCGA-KC-A4BL        TCGA-KC-A4BO 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KC-A4BR        TCGA-KC-A4BV        TCGA-KC-A7F3        TCGA-KC-A7FA 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KC-A7FE        TCGA-KK-A59V        TCGA-KK-A59Y        TCGA-KK-A59Z 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A5A1        TCGA-KK-A6DY        TCGA-KK-A6E0        TCGA-KK-A6E1 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A6E2        TCGA-KK-A6E4        TCGA-KK-A6E5        TCGA-KK-A6E7 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A7AQ        TCGA-KK-A7B0        TCGA-KK-A7B1        TCGA-KK-A7B2 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A7B3        TCGA-KK-A7B4        TCGA-KK-A8I5        TCGA-KK-A8I6 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A8I7        TCGA-KK-A8I8        TCGA-KK-A8I9        TCGA-KK-A8IA 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A8IB        TCGA-KK-A8IC        TCGA-KK-A8IG        TCGA-KK-A8IH 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A8IJ        TCGA-KK-A8IL        TCGA-KK-A8IM        TCGA-M7-A720 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-M7-A723        TCGA-M7-A725        TCGA-QU-A6IM        TCGA-QU-A6IO 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-QU-A6IP        TCGA-TK-A8OK        TCGA-V1-A8MG        TCGA-V1-A8MJ 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-V1-A8MK        TCGA-V1-A8MM        TCGA-V1-A8WL        TCGA-V1-A8WV 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-V1-A8WW        TCGA-V1-A8X3        TCGA-VN-A88I        TCGA-VN-A88K 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-VN-A88L        TCGA-VN-A88P        TCGA-VP-A872        TCGA-VP-A878 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-VP-A879        TCGA-VP-A87C        TCGA-VP-A87E        TCGA-VP-A87K 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-X4-A8KQ        TCGA-X4-A8KS        TCGA-XA-A8JR        TCGA-XJ-A83H 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-XJ-A9DI        TCGA-XJ-A9DK        TCGA-XJ-A9DQ        TCGA-XQ-A8TB 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-Y6-A8TL        TCGA-YL-A8HJ        TCGA-YL-A8HK        TCGA-YL-A8HO 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-YL-A8S8        TCGA-YL-A8SF        TCGA-YL-A8SH        TCGA-YL-A8SJ 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-YL-A8SK        TCGA-YL-A8SO        TCGA-YL-A8SR        TCGA-YL-A9WH 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-ZG-A8QW        TCGA-ZG-A8QX        TCGA-ZG-A8QY        TCGA-ZG-A8QZ 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNTNAP1 MUTATED        0      0      0      0      0      2
  CNTNAP1 WILD-TYPE     64     29     21     60     25     57
D16V8, multiclass
[1] "Remove cluster labels:" "CNTNAP1 MUTATED"       
clus
  CNTNAP1 MUTATED CNTNAP1 WILD-TYPE 
                2               256 
       TCGA-2A-A8VL        TCGA-2A-A8VV        TCGA-2A-A8W3        TCGA-CH-5737 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-CH-5738        TCGA-CH-5739        TCGA-CH-5741        TCGA-CH-5746 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-CH-5750        TCGA-CH-5752        TCGA-CH-5762        TCGA-CH-5763 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-CH-5764        TCGA-CH-5766        TCGA-CH-5769        TCGA-CH-5772 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-CH-5789        TCGA-CH-5792        TCGA-CH-5794        TCGA-EJ-5494 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-5497        TCGA-EJ-5504        TCGA-EJ-5506        TCGA-EJ-5512 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-5514        TCGA-EJ-5516        TCGA-EJ-5517        TCGA-EJ-5522 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-5524        TCGA-EJ-5525        TCGA-EJ-5526        TCGA-EJ-5527 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-5542        TCGA-EJ-7115        TCGA-EJ-7123        TCGA-EJ-7125 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-7314        TCGA-EJ-7315        TCGA-EJ-7317        TCGA-EJ-7321 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-7327        TCGA-EJ-7328        TCGA-EJ-7330        TCGA-EJ-7331 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-7782        TCGA-EJ-7783        TCGA-EJ-7784        TCGA-EJ-7785 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-7786        TCGA-EJ-7788        TCGA-EJ-7791        TCGA-EJ-7792 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-7793        TCGA-EJ-7794        TCGA-EJ-7797        TCGA-EJ-8468 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-8469        TCGA-EJ-8470        TCGA-EJ-8472        TCGA-EJ-8474 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-A46B        TCGA-EJ-A46D        TCGA-EJ-A46E        TCGA-EJ-A46G 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-A46H        TCGA-EJ-A46I        TCGA-EJ-A65F        TCGA-EJ-A65J 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-A6RA        TCGA-EJ-A6RC        TCGA-EJ-A7NH        TCGA-EJ-A7NJ 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-A7NK        TCGA-EJ-A7NM        TCGA-EJ-A8FN        TCGA-EJ-A8FO 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-EJ-A8FP        TCGA-EJ-A8FU        TCGA-FC-7708        TCGA-FC-7961 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-FC-A8O0        TCGA-G9-6329        TCGA-G9-6333        TCGA-G9-6336 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-G9-6338        TCGA-G9-6339        TCGA-G9-6342        TCGA-G9-6347 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-G9-6351        TCGA-G9-6353        TCGA-G9-6354        TCGA-G9-6361 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-G9-6365        TCGA-G9-6369        TCGA-G9-6377        TCGA-G9-6379 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-G9-6498        TCGA-G9-6499        TCGA-G9-7510        TCGA-G9-7519 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-G9-7521        TCGA-G9-7522        TCGA-G9-7523        TCGA-H9-7775 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-H9-A6BX        TCGA-HC-7075        TCGA-HC-7078        TCGA-HC-7079 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7081        TCGA-HC-7209        TCGA-HC-7210        TCGA-HC-7212 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7213        TCGA-HC-7230        TCGA-HC-7231        TCGA-HC-7232 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7233        TCGA-HC-7737        TCGA-HC-7740        TCGA-HC-7742 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7744        TCGA-HC-7745        TCGA-HC-7747        TCGA-HC-7748 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7749        TCGA-HC-7750        TCGA-HC-7817        TCGA-HC-7818 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-7820        TCGA-HC-7821        TCGA-HC-8258        TCGA-HC-8260 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-8261        TCGA-HC-8262        TCGA-HC-8264        TCGA-HC-A4ZV 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-A631        TCGA-HC-A632        TCGA-HC-A6AL        TCGA-HC-A6AN 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-A6AP        TCGA-HC-A6HX        TCGA-HC-A6HY        TCGA-HC-A76W 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HC-A8D0        TCGA-HC-A8D1        TCGA-HI-7168        TCGA-HI-7169 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-HI-7170        TCGA-HI-7171        TCGA-J4-8198        TCGA-J4-8200 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-J4-A67L        TCGA-J4-A67M        TCGA-J4-A67Q        TCGA-J4-A67R 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-J4-A67T        TCGA-J4-A6G1        TCGA-J4-A6G3        TCGA-J4-A83I 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-J4-A83J        TCGA-J4-A83K        TCGA-J4-A83L        TCGA-J4-A83M 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-J9-A52B        TCGA-J9-A52C        TCGA-J9-A52E        TCGA-J9-A8CK 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-J9-A8CL        TCGA-J9-A8CM        TCGA-KC-A4BL        TCGA-KC-A4BO 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KC-A4BR        TCGA-KC-A4BV        TCGA-KC-A7F3        TCGA-KC-A7FA 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KC-A7FE        TCGA-KK-A59V        TCGA-KK-A59Y        TCGA-KK-A59Z 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A5A1        TCGA-KK-A6DY        TCGA-KK-A6E0        TCGA-KK-A6E1 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A6E2        TCGA-KK-A6E4        TCGA-KK-A6E5        TCGA-KK-A6E7 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A7AQ        TCGA-KK-A7B0        TCGA-KK-A7B1        TCGA-KK-A7B2 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A7B3        TCGA-KK-A7B4        TCGA-KK-A8I5        TCGA-KK-A8I6 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A8I7        TCGA-KK-A8I8        TCGA-KK-A8I9        TCGA-KK-A8IA 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A8IB        TCGA-KK-A8IC        TCGA-KK-A8IG        TCGA-KK-A8IH 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-KK-A8IJ        TCGA-KK-A8IL        TCGA-KK-A8IM        TCGA-M7-A720 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-M7-A723        TCGA-M7-A725        TCGA-QU-A6IM        TCGA-QU-A6IO 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-QU-A6IP        TCGA-TK-A8OK        TCGA-V1-A8MG        TCGA-V1-A8MJ 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-V1-A8MK        TCGA-V1-A8MM        TCGA-V1-A8WL        TCGA-V1-A8WV 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-V1-A8WW        TCGA-V1-A8X3        TCGA-VN-A88I        TCGA-VN-A88K 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-VN-A88L        TCGA-VN-A88P        TCGA-VP-A872        TCGA-VP-A878 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-VP-A879        TCGA-VP-A87C        TCGA-VP-A87E        TCGA-VP-A87K 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-X4-A8KQ        TCGA-X4-A8KS        TCGA-XA-A8JR        TCGA-XJ-A83H 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-XJ-A9DI        TCGA-XJ-A9DK        TCGA-XJ-A9DQ        TCGA-XQ-A8TB 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-Y6-A8TL        TCGA-YL-A8HJ        TCGA-YL-A8HK        TCGA-YL-A8HO 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-YL-A8S8        TCGA-YL-A8SF        TCGA-YL-A8SH        TCGA-YL-A8SJ 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-YL-A8SK        TCGA-YL-A8SO        TCGA-YL-A8SR        TCGA-YL-A9WH 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 
       TCGA-ZG-A8QW        TCGA-ZG-A8QX        TCGA-ZG-A8QY        TCGA-ZG-A8QZ 
"CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" "CNTNAP1 WILD-TYPE" 

Clustering(17) Variable = BMP2K MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMP2K MUTATED        5      0      1
  BMP2K WILD-TYPE    241    100     73
D17V1, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             5             241
  CLUS_2             0             100
  CLUS_3             1              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMP2K MUTATED        1      2      3
  BMP2K WILD-TYPE    141    130    148
D17V2, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             1             141
  CLUS_2             2             130
  CLUS_3             3             148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMP2K MUTATED        1      3      2
  BMP2K WILD-TYPE    127    140    151
D17V3, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             1             127
  CLUS_2             3             140
  CLUS_3             2             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMP2K MUTATED        2      3      1
  BMP2K WILD-TYPE    151    164    103
D17V4, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             2             151
  CLUS_2             3             164
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMP2K MUTATED        1      3      2
  BMP2K WILD-TYPE    143    120    152
D17V5, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             1             143
  CLUS_2             3             120
  CLUS_3             2             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMP2K MUTATED        2      1      0      1      2
  BMP2K WILD-TYPE    134     80     52     95     54
D17V6, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             2             134
  CLUS_2             1              80
  CLUS_3             0              52
  CLUS_4             1              95
  CLUS_5             2              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMP2K MUTATED        2      0      0      1
  BMP2K WILD-TYPE     57     74     45     79
D17V7, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             2              57
  CLUS_2             0              74
  CLUS_3             0              45
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BMP2K MUTATED        1      0      0      0      1      1
  BMP2K WILD-TYPE     63     29     21     60     24     58
D17V8, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             1              63
  CLUS_2             0              29
  CLUS_3             0              21
  CLUS_4             0              60
  CLUS_5             1              24
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = RPTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        3      0      3
  RPTN WILD-TYPE    243    100     71
D18V1, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            3            243
  CLUS_2            0            100
  CLUS_3            3             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        2      3      1
  RPTN WILD-TYPE    140    129    150
D18V2, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            2            140
  CLUS_2            3            129
  CLUS_3            1            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        2      2      2
  RPTN WILD-TYPE    126    141    151
D18V3, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            2            126
  CLUS_2            2            141
  CLUS_3            2            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        2      3      1
  RPTN WILD-TYPE    151    164    103
D18V4, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            2            151
  CLUS_2            3            164
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        2      1      3
  RPTN WILD-TYPE    142    122    151
D18V5, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            2            142
  CLUS_2            1            122
  CLUS_3            3            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPTN MUTATED        1      0      0      2      3
  RPTN WILD-TYPE    135     81     52     94     53
D18V6, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            1            135
  CLUS_2            0             81
  CLUS_3            0             52
  CLUS_4            2             94
  CLUS_5            3             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        0      2      0      3
  RPTN WILD-TYPE     59     72     45     77
D18V7, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            0             59
  CLUS_2            2             72
  CLUS_3            0             45
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RPTN MUTATED        1      0      0      1      0      3
  RPTN WILD-TYPE     63     29     21     59     25     56
D18V8, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            1             63
  CLUS_2            0             29
  CLUS_3            0             21
  CLUS_4            1             59
  CLUS_5            0             25
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = TCEB3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB3 MUTATED        2      1      1
  TCEB3 WILD-TYPE    244     99     73
D19V1, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             2             244
  CLUS_2             1              99
  CLUS_3             1              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB3 MUTATED        2      0      2
  TCEB3 WILD-TYPE    140    132    149
D19V2, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             2             140
  CLUS_2             0             132
  CLUS_3             2             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB3 MUTATED        1      0      3
  TCEB3 WILD-TYPE    127    143    150
D19V3, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             1             127
  CLUS_2             0             143
  CLUS_3             3             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB3 MUTATED        1      0      3
  TCEB3 WILD-TYPE    152    167    101
D19V4, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             1             152
  CLUS_2             0             167
  CLUS_3             3             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB3 MUTATED        3      1      0
  TCEB3 WILD-TYPE    141    122    154
D19V5, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             3             141
  CLUS_2             1             122
  CLUS_3             0             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCEB3 MUTATED        1      1      2      0      0
  TCEB3 WILD-TYPE    135     80     50     96     56
D19V6, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             1              80
  CLUS_3             2              50
  CLUS_4             0              96
  CLUS_5             0              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB3 MUTATED        1      2      0      0
  TCEB3 WILD-TYPE     58     72     45     80
D19V7, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             2              72
  CLUS_3             0              45
  CLUS_4             0              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCEB3 MUTATED        1      0      0      1      1      0
  TCEB3 WILD-TYPE     63     29     21     59     24     59
D19V8, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             1              63
  CLUS_2             0              29
  CLUS_3             0              21
  CLUS_4             1              59
  CLUS_5             1              24
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = NTM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NTM MUTATED        4      1      1
  NTM WILD-TYPE    242     99     73
D20V1, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           4           242
  CLUS_2           1            99
  CLUS_3           1            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NTM MUTATED        2      1      3
  NTM WILD-TYPE    140    131    148
D20V2, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           2           140
  CLUS_2           1           131
  CLUS_3           3           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NTM MUTATED        3      0      3
  NTM WILD-TYPE    125    143    150
D20V3, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           3           125
  CLUS_2           0           143
  CLUS_3           3           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NTM MUTATED        3      1      2
  NTM WILD-TYPE    150    166    102
D20V4, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           3           150
  CLUS_2           1           166
  CLUS_3           2           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NTM MUTATED        3      1      2
  NTM WILD-TYPE    141    122    152
D20V5, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           3           141
  CLUS_2           1           122
  CLUS_3           2           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NTM MUTATED        3      0      1      1      1
  NTM WILD-TYPE    133     81     51     95     55
D20V6, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           3           133
  CLUS_2           0            81
  CLUS_3           1            51
  CLUS_4           1            95
  CLUS_5           1            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTM MUTATED        0      0      1      2
  NTM WILD-TYPE     59     74     44     78
D20V7, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           0            59
  CLUS_2           0            74
  CLUS_3           1            44
  CLUS_4           2            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NTM MUTATED        1      0      0      0      0      2
  NTM WILD-TYPE     63     29     21     60     25     57
D20V8, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           1            63
  CLUS_2           0            29
  CLUS_3           0            21
  CLUS_4           0            60
  CLUS_5           0            25
  CLUS_6           2            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = MED12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        4      0      3
  MED12 WILD-TYPE    242    100     71
D21V1, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             4             242
  CLUS_2             0             100
  CLUS_3             3              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        2      3      2
  MED12 WILD-TYPE    140    129    149
D21V2, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2             140
  CLUS_2             3             129
  CLUS_3             2             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        2      3      2
  MED12 WILD-TYPE    126    140    151
D21V3, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2             126
  CLUS_2             3             140
  CLUS_3             2             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        1      5      1
  MED12 WILD-TYPE    152    162    103
D21V4, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             1             152
  CLUS_2             5             162
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        2      1      4
  MED12 WILD-TYPE    142    122    150
D21V5, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2             142
  CLUS_2             1             122
  CLUS_3             4             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12 MUTATED        3      1      0      2      1
  MED12 WILD-TYPE    133     80     52     94     55
D21V6, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             3             133
  CLUS_2             1              80
  CLUS_3             0              52
  CLUS_4             2              94
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12 MUTATED        0      2      1      0
  MED12 WILD-TYPE     59     72     44     80
D21V7, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             2              72
  CLUS_3             1              44
  CLUS_4             0              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED12 MUTATED        1      1      0      1      0      0
  MED12 WILD-TYPE     63     28     21     59     25     59
D21V8, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             1              63
  CLUS_2             1              28
  CLUS_3             0              21
  CLUS_4             1              59
  CLUS_5             0              25
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = MED15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        5      0      1
  MED15 WILD-TYPE    241    100     73
D22V1, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             5             241
  CLUS_2             0             100
  CLUS_3             1              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        0      4      2
  MED15 WILD-TYPE    142    128    149
D22V2, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             0             142
  CLUS_2             4             128
  CLUS_3             2             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        1      2      3
  MED15 WILD-TYPE    127    141    150
D22V3, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             1             127
  CLUS_2             2             141
  CLUS_3             3             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        2      4      0
  MED15 WILD-TYPE    151    163    104
D22V4, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2             151
  CLUS_2             4             163
  CLUS_3             0             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        2      1      3
  MED15 WILD-TYPE    142    122    151
D22V5, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2             142
  CLUS_2             1             122
  CLUS_3             3             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED15 MUTATED        2      1      0      1      2
  MED15 WILD-TYPE    134     80     52     95     54
D22V6, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             1              80
  CLUS_3             0              52
  CLUS_4             1              95
  CLUS_5             2              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        1      2      1      1
  MED15 WILD-TYPE     58     72     44     79
D22V7, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             2              72
  CLUS_3             1              44
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED15 MUTATED        0      1      0      1      1      2
  MED15 WILD-TYPE     64     28     21     59     24     57
D22V8, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             0              64
  CLUS_2             1              28
  CLUS_3             0              21
  CLUS_4             1              59
  CLUS_5             1              24
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = ERN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERN1 MUTATED        1      2      0
  ERN1 WILD-TYPE    245     98     74
D23V1, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            1            245
  CLUS_2            2             98
  CLUS_3            0             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERN1 MUTATED        0      3      0
  ERN1 WILD-TYPE    142    129    151
D23V2, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            0            142
  CLUS_2            3            129
  CLUS_3            0            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERN1 MUTATED        1      2      0
  ERN1 WILD-TYPE    127    141    153
D23V3, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            1            127
  CLUS_2            2            141
  CLUS_3            0            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERN1 MUTATED        1      2      0
  ERN1 WILD-TYPE    152    165    104
D23V4, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            1            152
  CLUS_2            2            165
  CLUS_3            0            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERN1 MUTATED        1      0      2
  ERN1 WILD-TYPE    143    123    152
D23V5, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            1            143
  CLUS_2            0            123
  CLUS_3            2            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERN1 MUTATED        2      0      0      1      0
  ERN1 WILD-TYPE    134     81     52     95     56
D23V6, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            2            134
  CLUS_2            0             81
  CLUS_3            0             52
  CLUS_4            1             95
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        0      2      0      0
  ERN1 WILD-TYPE     59     72     45     80
D23V7, multiclass
[1] "Remove cluster labels:" "ERN1 MUTATED"          
clus
  ERN1 MUTATED ERN1 WILD-TYPE 
             2            256 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6333     TCGA-G9-6336 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6347 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6354     TCGA-G9-6361 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6365     TCGA-G9-6369     TCGA-G9-6377     TCGA-G9-6379 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-H9-A6BX     TCGA-HC-7075     TCGA-HC-7078     TCGA-HC-7079 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210     TCGA-HC-7212 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7744     TCGA-HC-7745     TCGA-HC-7747     TCGA-HC-7748 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7817     TCGA-HC-7818 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7820     TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-8261     TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-8266     TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-A6AL     TCGA-HC-A6AN     TCGA-HC-A6AP     TCGA-HC-A6HX 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-A6HY     TCGA-HC-A76W     TCGA-HC-A8D0     TCGA-HC-A8D1 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A67Q     TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83K     TCGA-J4-A83L 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A52C     TCGA-J9-A52E 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J9-A8CK     TCGA-J9-A8CL     TCGA-J9-A8CM     TCGA-KC-A4BL 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59Y 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6DY     TCGA-KK-A6E0 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E4     TCGA-KK-A6E5 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A6E7     TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8IJ     TCGA-KK-A8IL     TCGA-KK-A8IM     TCGA-M7-A720 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-M7-A723     TCGA-M7-A725     TCGA-QU-A6IM     TCGA-QU-A6IO 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-V1-A8MG     TCGA-V1-A8MJ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL     TCGA-V1-A8WV 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88I     TCGA-VN-A88K 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR     TCGA-XJ-A83H 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ     TCGA-XQ-A8TB 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HO 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH     TCGA-YL-A8SJ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR     TCGA-YL-A9WH 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERN1 MUTATED        0      0      0      2      0      0
  ERN1 WILD-TYPE     64     29     21     58     25     59
D23V8, multiclass
[1] "Remove cluster labels:" "ERN1 MUTATED"          
clus
  ERN1 MUTATED ERN1 WILD-TYPE 
             2            256 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6333     TCGA-G9-6336 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6347 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6354     TCGA-G9-6361 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6365     TCGA-G9-6369     TCGA-G9-6377     TCGA-G9-6379 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-H9-A6BX     TCGA-HC-7075     TCGA-HC-7078     TCGA-HC-7079 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210     TCGA-HC-7212 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7744     TCGA-HC-7745     TCGA-HC-7747     TCGA-HC-7748 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7817     TCGA-HC-7818 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7820     TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-8261     TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-8266     TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-A6AL     TCGA-HC-A6AN     TCGA-HC-A6AP     TCGA-HC-A6HX 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-A6HY     TCGA-HC-A76W     TCGA-HC-A8D0     TCGA-HC-A8D1 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A67Q     TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83K     TCGA-J4-A83L 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A52C     TCGA-J9-A52E 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J9-A8CK     TCGA-J9-A8CL     TCGA-J9-A8CM     TCGA-KC-A4BL 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59Y 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6DY     TCGA-KK-A6E0 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E4     TCGA-KK-A6E5 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A6E7     TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8IJ     TCGA-KK-A8IL     TCGA-KK-A8IM     TCGA-M7-A720 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-M7-A723     TCGA-M7-A725     TCGA-QU-A6IM     TCGA-QU-A6IO 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-V1-A8MG     TCGA-V1-A8MJ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL     TCGA-V1-A8WV 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88I     TCGA-VN-A88K 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR     TCGA-XJ-A83H 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ     TCGA-XQ-A8TB 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HO 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH     TCGA-YL-A8SJ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR     TCGA-YL-A9WH 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 

Clustering(24) Variable = LMOD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMOD2 MUTATED        3      1      1
  LMOD2 WILD-TYPE    243     99     73
D24V1, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             3             243
  CLUS_2             1              99
  CLUS_3             1              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMOD2 MUTATED        2      1      2
  LMOD2 WILD-TYPE    140    131    149
D24V2, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             2             140
  CLUS_2             1             131
  CLUS_3             2             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMOD2 MUTATED        1      2      2
  LMOD2 WILD-TYPE    127    141    151
D24V3, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             1             127
  CLUS_2             2             141
  CLUS_3             2             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMOD2 MUTATED        1      2      2
  LMOD2 WILD-TYPE    152    165    102
D24V4, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             1             152
  CLUS_2             2             165
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMOD2 MUTATED        2      2      1
  LMOD2 WILD-TYPE    142    121    153
D24V5, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             2             142
  CLUS_2             2             121
  CLUS_3             1             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMOD2 MUTATED        1      2      0      1      1
  LMOD2 WILD-TYPE    135     79     52     95     55
D24V6, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             2              79
  CLUS_3             0              52
  CLUS_4             1              95
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD2 MUTATED        1      1      2      1
  LMOD2 WILD-TYPE     58     73     43     79
D24V7, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             1              73
  CLUS_3             2              43
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LMOD2 MUTATED        1      2      0      1      0      1
  LMOD2 WILD-TYPE     63     27     21     59     25     58
D24V8, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             1              63
  CLUS_2             2              27
  CLUS_3             0              21
  CLUS_4             1              59
  CLUS_5             0              25
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = FAM111A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM111A MUTATED        2      1      0
  FAM111A WILD-TYPE    244     99     74
D25V1, multiclass
        clus
vv       FAM111A MUTATED FAM111A WILD-TYPE
  CLUS_1               2               244
  CLUS_2               1                99
  CLUS_3               0                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM111A MUTATED        0      1      2
  FAM111A WILD-TYPE    142    131    149
D25V2, multiclass
        clus
vv       FAM111A MUTATED FAM111A WILD-TYPE
  CLUS_1               0               142
  CLUS_2               1               131
  CLUS_3               2               149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM111A MUTATED        0      0      3
  FAM111A WILD-TYPE    128    143    150
D25V3, multiclass
        clus
vv       FAM111A MUTATED FAM111A WILD-TYPE
  CLUS_1               0               128
  CLUS_2               0               143
  CLUS_3               3               150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM111A MUTATED        0      1      2
  FAM111A WILD-TYPE    153    166    102
D25V4, multiclass
        clus
vv       FAM111A MUTATED FAM111A WILD-TYPE
  CLUS_1               0               153
  CLUS_2               1               166
  CLUS_3               2               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM111A MUTATED        1      0      2
  FAM111A WILD-TYPE    143    123    152
D25V5, multiclass
        clus
vv       FAM111A MUTATED FAM111A WILD-TYPE
  CLUS_1               1               143
  CLUS_2               0               123
  CLUS_3               2               152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM111A MUTATED        1      0      2      0      0
  FAM111A WILD-TYPE    135     81     50     96     56
D25V6, multiclass
        clus
vv       FAM111A MUTATED FAM111A WILD-TYPE
  CLUS_1               1               135
  CLUS_2               0                81
  CLUS_3               2                50
  CLUS_4               0                96
  CLUS_5               0                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM111A MUTATED        0      0      0      0
  FAM111A WILD-TYPE     59     74     45     80
D25V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM111A MUTATED        0      0      0      0      0      0
  FAM111A WILD-TYPE     64     29     21     60     25     59
D25V8, multiclass

Clustering(26) Variable = ZNF709 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        3      0      2
  ZNF709 WILD-TYPE    243    100     72
D26V1, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              3              243
  CLUS_2              0              100
  CLUS_3              2               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        2      1      2
  ZNF709 WILD-TYPE    140    131    149
D26V2, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2              140
  CLUS_2              1              131
  CLUS_3              2              149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        2      0      3
  ZNF709 WILD-TYPE    126    143    150
D26V3, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2              126
  CLUS_2              0              143
  CLUS_3              3              150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        2      1      2
  ZNF709 WILD-TYPE    151    166    102
D26V4, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2              151
  CLUS_2              1              166
  CLUS_3              2              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        1      2      2
  ZNF709 WILD-TYPE    143    121    152
D26V5, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              143
  CLUS_2              2              121
  CLUS_3              2              152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF709 MUTATED        1      0      0      2      2
  ZNF709 WILD-TYPE    135     81     52     94     54
D26V6, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              0               81
  CLUS_3              0               52
  CLUS_4              2               94
  CLUS_5              2               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      1      0      3
  ZNF709 WILD-TYPE     58     73     45     77
D26V7, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              1               73
  CLUS_3              0               45
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF709 MUTATED        1      0      0      1      0      3
  ZNF709 WILD-TYPE     63     29     21     59     25     56
D26V8, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               63
  CLUS_2              0               29
  CLUS_3              0               21
  CLUS_4              1               59
  CLUS_5              0               25
  CLUS_6              3               56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = MLLT10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLLT10 MUTATED        2      1      1
  MLLT10 WILD-TYPE    244     99     73
D27V1, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              2              244
  CLUS_2              1               99
  CLUS_3              1               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLLT10 MUTATED        3      1      0
  MLLT10 WILD-TYPE    139    131    151
D27V2, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              3              139
  CLUS_2              1              131
  CLUS_3              0              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLLT10 MUTATED        1      1      2
  MLLT10 WILD-TYPE    127    142    151
D27V3, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              1              127
  CLUS_2              1              142
  CLUS_3              2              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLLT10 MUTATED        2      2      0
  MLLT10 WILD-TYPE    151    165    104
D27V4, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              2              151
  CLUS_2              2              165
  CLUS_3              0              104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLLT10 MUTATED        3      0      1
  MLLT10 WILD-TYPE    141    123    153
D27V5, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              3              141
  CLUS_2              0              123
  CLUS_3              1              153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLLT10 MUTATED        3      0      0      1      0
  MLLT10 WILD-TYPE    133     81     52     95     56
D27V6, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              3              133
  CLUS_2              0               81
  CLUS_3              0               52
  CLUS_4              1               95
  CLUS_5              0               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        1      0      0      0
  MLLT10 WILD-TYPE     58     74     45     80
D27V7, multiclass
[1] "Remove cluster labels:" "MLLT10 MUTATED"        
clus
  MLLT10 MUTATED MLLT10 WILD-TYPE 
               1              257 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5497       TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5514       TCGA-EJ-5517       TCGA-EJ-5522       TCGA-EJ-5524 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A8O0 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6347       TCGA-G9-6351 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6353       TCGA-G9-6354       TCGA-G9-6361       TCGA-G9-6365 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6369       TCGA-G9-6377       TCGA-G9-6379       TCGA-G9-6498 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-7522       TCGA-G9-7523       TCGA-H9-7775       TCGA-H9-A6BX 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7075       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7081 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7210       TCGA-HC-7212       TCGA-HC-7213 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7232       TCGA-HC-7233 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7745       TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7750       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7820 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7821       TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-8262       TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A4ZV       TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A6AL 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A6AN       TCGA-HC-A6AP       TCGA-HC-A6HX       TCGA-HC-A6HY 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A76W       TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-8200       TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A67R       TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A83I       TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A83M       TCGA-J9-A52B       TCGA-J9-A52C       TCGA-J9-A52E 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J9-A8CK       TCGA-J9-A8CL       TCGA-J9-A8CM       TCGA-KC-A4BL 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KC-A4BO       TCGA-KC-A4BR       TCGA-KC-A4BV       TCGA-KC-A7F3 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KC-A7FA       TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59Y 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A59Z       TCGA-KK-A5A1       TCGA-KK-A6DY       TCGA-KK-A6E0 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A6E1       TCGA-KK-A6E2       TCGA-KK-A6E4       TCGA-KK-A6E5 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A6E7       TCGA-KK-A7AQ       TCGA-KK-A7B0       TCGA-KK-A7B1 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A7B2       TCGA-KK-A7B3       TCGA-KK-A7B4       TCGA-KK-A8I5 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8I6       TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8I9 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8IA       TCGA-KK-A8IB       TCGA-KK-A8IC       TCGA-KK-A8IG 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8IH       TCGA-KK-A8IJ       TCGA-KK-A8IL       TCGA-KK-A8IM 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-M7-A720       TCGA-M7-A723       TCGA-M7-A725       TCGA-QU-A6IM 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-QU-A6IO       TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-V1-A8MG 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A8MJ       TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A8WV       TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VN-A88K       TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VP-A878       TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VP-A87K       TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-XJ-A83H       TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-XQ-A8TB       TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A9WH       TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A8QZ 
"MLLT10 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLLT10 MUTATED        0      0      0      0      1      0
  MLLT10 WILD-TYPE     64     29     21     60     24     59
D27V8, multiclass
[1] "Remove cluster labels:" "MLLT10 MUTATED"        
clus
  MLLT10 MUTATED MLLT10 WILD-TYPE 
               1              257 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5497       TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5514       TCGA-EJ-5517       TCGA-EJ-5522       TCGA-EJ-5524 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A8O0 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6347       TCGA-G9-6351 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6353       TCGA-G9-6354       TCGA-G9-6361       TCGA-G9-6365 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6369       TCGA-G9-6377       TCGA-G9-6379       TCGA-G9-6498 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-7522       TCGA-G9-7523       TCGA-H9-7775       TCGA-H9-A6BX 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7075       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7081 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7210       TCGA-HC-7212       TCGA-HC-7213 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7232       TCGA-HC-7233 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7745       TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7750       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7820 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7821       TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-8262       TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A4ZV       TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A6AL 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A6AN       TCGA-HC-A6AP       TCGA-HC-A6HX       TCGA-HC-A6HY 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A76W       TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-8200       TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A67R       TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A83I       TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A83M       TCGA-J9-A52B       TCGA-J9-A52C       TCGA-J9-A52E 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J9-A8CK       TCGA-J9-A8CL       TCGA-J9-A8CM       TCGA-KC-A4BL 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KC-A4BO       TCGA-KC-A4BR       TCGA-KC-A4BV       TCGA-KC-A7F3 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KC-A7FA       TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59Y 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A59Z       TCGA-KK-A5A1       TCGA-KK-A6DY       TCGA-KK-A6E0 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A6E1       TCGA-KK-A6E2       TCGA-KK-A6E4       TCGA-KK-A6E5 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A6E7       TCGA-KK-A7AQ       TCGA-KK-A7B0       TCGA-KK-A7B1 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A7B2       TCGA-KK-A7B3       TCGA-KK-A7B4       TCGA-KK-A8I5 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8I6       TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8I9 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8IA       TCGA-KK-A8IB       TCGA-KK-A8IC       TCGA-KK-A8IG 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8IH       TCGA-KK-A8IJ       TCGA-KK-A8IL       TCGA-KK-A8IM 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-M7-A720       TCGA-M7-A723       TCGA-M7-A725       TCGA-QU-A6IM 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-QU-A6IO       TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-V1-A8MG 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A8MJ       TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A8WV       TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VN-A88K       TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VP-A878       TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VP-A87K       TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-XJ-A83H       TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-XQ-A8TB       TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A9WH       TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A8QZ 
"MLLT10 WILD-TYPE" 

Clustering(28) Variable = TNRC18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        3      2      1
  TNRC18 WILD-TYPE    243     98     73
D28V1, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              3              243
  CLUS_2              2               98
  CLUS_3              1               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        2      1      3
  TNRC18 WILD-TYPE    140    131    148
D28V2, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              140
  CLUS_2              1              131
  CLUS_3              3              148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        2      1      3
  TNRC18 WILD-TYPE    126    142    150
D28V3, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              126
  CLUS_2              1              142
  CLUS_3              3              150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        1      2      3
  TNRC18 WILD-TYPE    152    165    101
D28V4, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1              152
  CLUS_2              2              165
  CLUS_3              3              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        1      2      3
  TNRC18 WILD-TYPE    143    121    151
D28V5, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1              143
  CLUS_2              2              121
  CLUS_3              3              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC18 MUTATED        1      1      1      3      0
  TNRC18 WILD-TYPE    135     80     51     93     56
D28V6, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              1               80
  CLUS_3              1               51
  CLUS_4              3               93
  CLUS_5              0               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        0      2      1      2
  TNRC18 WILD-TYPE     59     72     44     78
D28V7, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0               59
  CLUS_2              2               72
  CLUS_3              1               44
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNRC18 MUTATED        1      0      1      1      0      2
  TNRC18 WILD-TYPE     63     29     20     59     25     57
D28V8, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1               63
  CLUS_2              0               29
  CLUS_3              1               20
  CLUS_4              1               59
  CLUS_5              0               25
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = GAGE2D MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2D MUTATED        3      0      0
  GAGE2D WILD-TYPE    243    100     74
D29V1, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              3              243
  CLUS_2              0              100
  CLUS_3              0               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2D MUTATED        3      0      0
  GAGE2D WILD-TYPE    139    132    151
D29V2, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              3              139
  CLUS_2              0              132
  CLUS_3              0              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2D MUTATED        3      0      0
  GAGE2D WILD-TYPE    125    143    153
D29V3, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              3              125
  CLUS_2              0              143
  CLUS_3              0              153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2D MUTATED        3      0      0
  GAGE2D WILD-TYPE    150    167    104
D29V4, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              3              150
  CLUS_2              0              167
  CLUS_3              0              104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2D MUTATED        2      0      1
  GAGE2D WILD-TYPE    142    123    153
D29V5, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              2              142
  CLUS_2              0              123
  CLUS_3              1              153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2D MUTATED        3      0      0      0      0
  GAGE2D WILD-TYPE    133     81     52     96     56
D29V6, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              3              133
  CLUS_2              0               81
  CLUS_3              0               52
  CLUS_4              0               96
  CLUS_5              0               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2D MUTATED        2      0      0      0
  GAGE2D WILD-TYPE     57     74     45     80
D29V7, multiclass
[1] "Remove cluster labels:" "GAGE2D MUTATED"        
clus
  GAGE2D MUTATED GAGE2D WILD-TYPE 
               2              256 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512       TCGA-EJ-5514 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5522       TCGA-EJ-5524 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A8O0 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6347       TCGA-G9-6351 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-6353       TCGA-G9-6354       TCGA-G9-6361       TCGA-G9-6365 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-6369       TCGA-G9-6377       TCGA-G9-6379       TCGA-G9-6498 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-7522       TCGA-G9-7523       TCGA-H9-7775       TCGA-H9-A6BX 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7075       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7081 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7210       TCGA-HC-7212       TCGA-HC-7213 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7232       TCGA-HC-7233 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7745       TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7750       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7820 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7821       TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-8262       TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-A4ZV       TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A6AL 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-A6AN       TCGA-HC-A6AP       TCGA-HC-A6HX       TCGA-HC-A6HY 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-A76W       TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-J4-8200       TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-J4-A67R       TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-J4-A83I       TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-J4-A83M       TCGA-J9-A52B       TCGA-J9-A52C       TCGA-J9-A52E 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-J9-A8CK       TCGA-J9-A8CL       TCGA-J9-A8CM       TCGA-KC-A4BL 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KC-A4BO       TCGA-KC-A4BR       TCGA-KC-A4BV       TCGA-KC-A7F3 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KC-A7FA       TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59Y 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A59Z       TCGA-KK-A5A1       TCGA-KK-A6DY       TCGA-KK-A6E0 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A6E1       TCGA-KK-A6E2       TCGA-KK-A6E4       TCGA-KK-A6E5 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A6E7       TCGA-KK-A7AQ       TCGA-KK-A7B0       TCGA-KK-A7B1 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A7B2       TCGA-KK-A7B3       TCGA-KK-A7B4       TCGA-KK-A8I5 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A8I6       TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8I9 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A8IA       TCGA-KK-A8IB       TCGA-KK-A8IC       TCGA-KK-A8IG 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A8IH       TCGA-KK-A8IJ       TCGA-KK-A8IL       TCGA-KK-A8IM 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-M7-A723       TCGA-M7-A725       TCGA-QU-A6IM       TCGA-QU-A6IO 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-V1-A8MG       TCGA-V1-A8MJ 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL       TCGA-V1-A8WV 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I       TCGA-VN-A88K 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872       TCGA-VP-A878 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E       TCGA-VP-A87K 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR       TCGA-XJ-A83H 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ       TCGA-XQ-A8TB 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK       TCGA-YL-A8HO 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH       TCGA-YL-A8SJ 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR       TCGA-YL-A9WH 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY       TCGA-ZG-A8QZ 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAGE2D MUTATED        1      0      0      0      1      0
  GAGE2D WILD-TYPE     63     29     21     60     24     59
D29V8, multiclass
[1] "Remove cluster labels:" "GAGE2D MUTATED"        
clus
  GAGE2D MUTATED GAGE2D WILD-TYPE 
               2              256 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512       TCGA-EJ-5514 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5522       TCGA-EJ-5524 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A8O0 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6347       TCGA-G9-6351 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-6353       TCGA-G9-6354       TCGA-G9-6361       TCGA-G9-6365 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-6369       TCGA-G9-6377       TCGA-G9-6379       TCGA-G9-6498 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-G9-7522       TCGA-G9-7523       TCGA-H9-7775       TCGA-H9-A6BX 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7075       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7081 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7210       TCGA-HC-7212       TCGA-HC-7213 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7232       TCGA-HC-7233 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7745       TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7750       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7820 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-7821       TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-8262       TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-A4ZV       TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A6AL 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-A6AN       TCGA-HC-A6AP       TCGA-HC-A6HX       TCGA-HC-A6HY 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HC-A76W       TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-J4-8200       TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-J4-A67R       TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-J4-A83I       TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-J4-A83M       TCGA-J9-A52B       TCGA-J9-A52C       TCGA-J9-A52E 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-J9-A8CK       TCGA-J9-A8CL       TCGA-J9-A8CM       TCGA-KC-A4BL 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KC-A4BO       TCGA-KC-A4BR       TCGA-KC-A4BV       TCGA-KC-A7F3 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KC-A7FA       TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59Y 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A59Z       TCGA-KK-A5A1       TCGA-KK-A6DY       TCGA-KK-A6E0 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A6E1       TCGA-KK-A6E2       TCGA-KK-A6E4       TCGA-KK-A6E5 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A6E7       TCGA-KK-A7AQ       TCGA-KK-A7B0       TCGA-KK-A7B1 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A7B2       TCGA-KK-A7B3       TCGA-KK-A7B4       TCGA-KK-A8I5 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A8I6       TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8I9 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A8IA       TCGA-KK-A8IB       TCGA-KK-A8IC       TCGA-KK-A8IG 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-KK-A8IH       TCGA-KK-A8IJ       TCGA-KK-A8IL       TCGA-KK-A8IM 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-M7-A723       TCGA-M7-A725       TCGA-QU-A6IM       TCGA-QU-A6IO 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-V1-A8MG       TCGA-V1-A8MJ 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL       TCGA-V1-A8WV 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I       TCGA-VN-A88K 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872       TCGA-VP-A878 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E       TCGA-VP-A87K 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR       TCGA-XJ-A83H 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ       TCGA-XQ-A8TB 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK       TCGA-YL-A8HO 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH       TCGA-YL-A8SJ 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR       TCGA-YL-A9WH 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY       TCGA-ZG-A8QZ 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 

Clustering(30) Variable = EMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        2      2      0
  EMG1 WILD-TYPE    244     98     74
D30V1, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            244
  CLUS_2            2             98
  CLUS_3            0             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        0      1      3
  EMG1 WILD-TYPE    142    131    148
D30V2, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0            142
  CLUS_2            1            131
  CLUS_3            3            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        0      2      2
  EMG1 WILD-TYPE    128    141    151
D30V3, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0            128
  CLUS_2            2            141
  CLUS_3            2            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        0      2      2
  EMG1 WILD-TYPE    153    165    102
D30V4, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0            153
  CLUS_2            2            165
  CLUS_3            2            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        0      0      4
  EMG1 WILD-TYPE    144    123    150
D30V5, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0            144
  CLUS_2            0            123
  CLUS_3            4            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        0      0      1      0      3
  EMG1 WILD-TYPE    136     81     51     96     53
D30V6, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            0             81
  CLUS_3            1             51
  CLUS_4            0             96
  CLUS_5            3             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      1      0      1
  EMG1 WILD-TYPE     59     73     45     79
D30V7, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             2            256 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6333     TCGA-G9-6336 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6347 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6354     TCGA-G9-6361 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6365     TCGA-G9-6369     TCGA-G9-6377     TCGA-G9-6379 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-H9-A6BX     TCGA-HC-7075     TCGA-HC-7079     TCGA-HC-7081 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7210     TCGA-HC-7212     TCGA-HC-7213 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7745     TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7750     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7820 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A6AL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A6AN     TCGA-HC-A6AP     TCGA-HC-A6HX     TCGA-HC-A6HY 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A76W     TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HI-7168 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M     TCGA-J4-A67Q 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K     TCGA-J4-A83L 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A52C     TCGA-J9-A52E 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J9-A8CK     TCGA-J9-A8CL     TCGA-J9-A8CM     TCGA-KC-A4BL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59Y 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6DY     TCGA-KK-A6E0 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E4     TCGA-KK-A6E5 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A6E7     TCGA-KK-A7AQ     TCGA-KK-A7B0     TCGA-KK-A7B1 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A7B2     TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I5 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8I6     TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8I9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8IG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8IH     TCGA-KK-A8IJ     TCGA-KK-A8IL     TCGA-KK-A8IM 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A723     TCGA-M7-A725     TCGA-QU-A6IM 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QU-A6IO     TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-V1-A8MG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88I 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A878 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR     TCGA-XJ-A83H 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ     TCGA-XQ-A8TB 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH     TCGA-YL-A8SJ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR     TCGA-YL-A9WH 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EMG1 MUTATED        0      0      1      1      0      0
  EMG1 WILD-TYPE     64     29     20     59     25     59
D30V8, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             2            256 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6333     TCGA-G9-6336 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6347 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6354     TCGA-G9-6361 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6365     TCGA-G9-6369     TCGA-G9-6377     TCGA-G9-6379 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-H9-A6BX     TCGA-HC-7075     TCGA-HC-7079     TCGA-HC-7081 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7210     TCGA-HC-7212     TCGA-HC-7213 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7745     TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7750     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7820 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A6AL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A6AN     TCGA-HC-A6AP     TCGA-HC-A6HX     TCGA-HC-A6HY 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A76W     TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HI-7168 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M     TCGA-J4-A67Q 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K     TCGA-J4-A83L 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A52C     TCGA-J9-A52E 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J9-A8CK     TCGA-J9-A8CL     TCGA-J9-A8CM     TCGA-KC-A4BL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59Y 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6DY     TCGA-KK-A6E0 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E4     TCGA-KK-A6E5 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A6E7     TCGA-KK-A7AQ     TCGA-KK-A7B0     TCGA-KK-A7B1 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A7B2     TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I5 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8I6     TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8I9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8IG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8IH     TCGA-KK-A8IJ     TCGA-KK-A8IL     TCGA-KK-A8IM 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A723     TCGA-M7-A725     TCGA-QU-A6IM 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QU-A6IO     TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-V1-A8MG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88I 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A878 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR     TCGA-XJ-A83H 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ     TCGA-XQ-A8TB 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH     TCGA-YL-A8SJ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR     TCGA-YL-A9WH 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 

Clustering(31) Variable = LAMA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA3 MUTATED        4      3      0
  LAMA3 WILD-TYPE    242     97     74
D31V1, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             4             242
  CLUS_2             3              97
  CLUS_3             0              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA3 MUTATED        2      4      1
  LAMA3 WILD-TYPE    140    128    150
D31V2, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             2             140
  CLUS_2             4             128
  CLUS_3             1             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA3 MUTATED        2      4      1
  LAMA3 WILD-TYPE    126    139    152
D31V3, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             2             126
  CLUS_2             4             139
  CLUS_3             1             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA3 MUTATED        2      4      1
  LAMA3 WILD-TYPE    151    163    103
D31V4, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             2             151
  CLUS_2             4             163
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA3 MUTATED        2      2      3
  LAMA3 WILD-TYPE    142    121    151
D31V5, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             2             142
  CLUS_2             2             121
  CLUS_3             3             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAMA3 MUTATED        2      1      1      2      1
  LAMA3 WILD-TYPE    134     80     51     94     55
D31V6, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             1              80
  CLUS_3             1              51
  CLUS_4             2              94
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA3 MUTATED        0      1      1      1
  LAMA3 WILD-TYPE     59     73     44     79
D31V7, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             1              73
  CLUS_3             1              44
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LAMA3 MUTATED        0      0      0      1      0      2
  LAMA3 WILD-TYPE     64     29     21     59     25     57
D31V8, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             0              64
  CLUS_2             0              29
  CLUS_3             0              21
  CLUS_4             1              59
  CLUS_5             0              25
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = RPL11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPL11 MUTATED        3      0      1
  RPL11 WILD-TYPE    243    100     73
D32V1, multiclass
        clus
vv       RPL11 MUTATED RPL11 WILD-TYPE
  CLUS_1             3             243
  CLUS_2             0             100
  CLUS_3             1              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPL11 MUTATED        1      1      2
  RPL11 WILD-TYPE    141    131    149
D32V2, multiclass
        clus
vv       RPL11 MUTATED RPL11 WILD-TYPE
  CLUS_1             1             141
  CLUS_2             1             131
  CLUS_3             2             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPL11 MUTATED        0      2      2
  RPL11 WILD-TYPE    128    141    151
D32V3, multiclass
        clus
vv       RPL11 MUTATED RPL11 WILD-TYPE
  CLUS_1             0             128
  CLUS_2             2             141
  CLUS_3             2             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPL11 MUTATED        1      1      2
  RPL11 WILD-TYPE    152    166    102
D32V4, multiclass
        clus
vv       RPL11 MUTATED RPL11 WILD-TYPE
  CLUS_1             1             152
  CLUS_2             1             166
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPL11 MUTATED        1      1      2
  RPL11 WILD-TYPE    143    122    152
D32V5, multiclass
        clus
vv       RPL11 MUTATED RPL11 WILD-TYPE
  CLUS_1             1             143
  CLUS_2             1             122
  CLUS_3             2             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPL11 MUTATED        2      0      0      1      1
  RPL11 WILD-TYPE    134     81     52     95     55
D32V6, multiclass
        clus
vv       RPL11 MUTATED RPL11 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             0              81
  CLUS_3             0              52
  CLUS_4             1              95
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPL11 MUTATED        0      0      0      1
  RPL11 WILD-TYPE     59     74     45     79
D32V7, multiclass
[1] "Remove cluster labels:" "RPL11 MUTATED"         
clus
  RPL11 MUTATED RPL11 WILD-TYPE 
              1             257 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-5542      TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-7327      TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-7782      TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-7786      TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-7793      TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-8469      TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-A46B      TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-A46H      TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-A7NK      TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-A8FP      TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-7961 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-FC-A8O0      TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-G9-6338      TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-G9-6351      TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-G9-6365      TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-G9-6498      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-H9-A6BX      TCGA-HC-7075      TCGA-HC-7078      TCGA-HC-7079 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7745      TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7750      TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7821      TCGA-HC-8258      TCGA-HC-8260      TCGA-HC-8261 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-8262      TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-A4ZV      TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-A6AN      TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-A76W      TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-J4-8200      TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-J4-A67R      TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-J4-A83I      TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-J4-A83M      TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-J9-A8CK      TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KC-A4BO      TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KC-A7FA      TCGA-KC-A7FE      TCGA-KK-A59V      TCGA-KK-A59Y 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A59Z      TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A6E1      TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A6E7      TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A7B2      TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A8I6      TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A8IA      TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A8IH      TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-M7-A720      TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-QU-A6IO      TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-V1-A8MJ      TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-V1-A8WV      TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-VN-A88K      TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-VP-A878      TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-VP-A87K      TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-XJ-A83H      TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-XQ-A8TB      TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-YL-A8HO      TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-YL-A8SJ      TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-YL-A9WH      TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-ZG-A8QZ 
"RPL11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RPL11 MUTATED        0      0      0      0      0      1
  RPL11 WILD-TYPE     64     29     21     60     25     58
D32V8, multiclass
[1] "Remove cluster labels:" "RPL11 MUTATED"         
clus
  RPL11 MUTATED RPL11 WILD-TYPE 
              1             257 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-5542      TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-7327      TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-7782      TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-7786      TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-7793      TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-8469      TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-A46B      TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-A46H      TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-A7NK      TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-EJ-A8FP      TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-7961 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-FC-A8O0      TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-G9-6338      TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-G9-6351      TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-G9-6365      TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-G9-6498      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-H9-A6BX      TCGA-HC-7075      TCGA-HC-7078      TCGA-HC-7079 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7745      TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7750      TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-7821      TCGA-HC-8258      TCGA-HC-8260      TCGA-HC-8261 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-8262      TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-A4ZV      TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-A6AN      TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HC-A76W      TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-J4-8200      TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-J4-A67R      TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-J4-A83I      TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-J4-A83M      TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-J9-A8CK      TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KC-A4BO      TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KC-A7FA      TCGA-KC-A7FE      TCGA-KK-A59V      TCGA-KK-A59Y 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A59Z      TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A6E1      TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A6E7      TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A7B2      TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A8I6      TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A8IA      TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-KK-A8IH      TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-M7-A720      TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-QU-A6IO      TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-V1-A8MJ      TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-V1-A8WV      TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-VN-A88K      TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-VP-A878      TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-VP-A87K      TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-XJ-A83H      TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-XQ-A8TB      TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-YL-A8HO      TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-YL-A8SJ      TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-YL-A9WH      TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY 
"RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" "RPL11 WILD-TYPE" 
     TCGA-ZG-A8QZ 
"RPL11 WILD-TYPE" 

Clustering(33) Variable = ZFHX3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED        5      3      5
  ZFHX3 WILD-TYPE    241     97     69
D33V1, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             5             241
  CLUS_2             3              97
  CLUS_3             5              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED        3      7      3
  ZFHX3 WILD-TYPE    139    125    148
D33V2, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3             139
  CLUS_2             7             125
  CLUS_3             3             148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED        1      7      5
  ZFHX3 WILD-TYPE    127    136    148
D33V3, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             1             127
  CLUS_2             7             136
  CLUS_3             5             148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED        2      9      2
  ZFHX3 WILD-TYPE    151    158    102
D33V4, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             2             151
  CLUS_2             9             158
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED        2      4      7
  ZFHX3 WILD-TYPE    142    119    147
D33V5, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             2             142
  CLUS_2             4             119
  CLUS_3             7             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        3      2      1      3      4
  ZFHX3 WILD-TYPE    133     79     51     93     52
D33V6, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3             133
  CLUS_2             2              79
  CLUS_3             1              51
  CLUS_4             3              93
  CLUS_5             4              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        0      4      1      3
  ZFHX3 WILD-TYPE     59     70     44     77
D33V7, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             4              70
  CLUS_3             1              44
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFHX3 MUTATED        2      1      1      2      0      2
  ZFHX3 WILD-TYPE     62     28     20     58     25     57
D33V8, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             2              62
  CLUS_2             1              28
  CLUS_3             1              20
  CLUS_4             2              58
  CLUS_5             0              25
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = MUC17 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED       11      6      8
  MUC17 WILD-TYPE    235     94     66
D34V1, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1            11             235
  CLUS_2             6              94
  CLUS_3             8              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED        4     11     10
  MUC17 WILD-TYPE    138    121    141
D34V2, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             4             138
  CLUS_2            11             121
  CLUS_3            10             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED        3     12     10
  MUC17 WILD-TYPE    125    131    143
D34V3, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             3             125
  CLUS_2            12             131
  CLUS_3            10             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED        6     13      6
  MUC17 WILD-TYPE    147    154     98
D34V4, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             6             147
  CLUS_2            13             154
  CLUS_3             6              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED        6      4     14
  MUC17 WILD-TYPE    138    119    140
D34V5, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             6             138
  CLUS_2             4             119
  CLUS_3            14             140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC17 MUTATED        8      4      2      8      2
  MUC17 WILD-TYPE    128     77     50     88     54
D34V6, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             8             128
  CLUS_2             4              77
  CLUS_3             2              50
  CLUS_4             8              88
  CLUS_5             2              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED        3      4      2      3
  MUC17 WILD-TYPE     56     70     43     77
D34V7, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             3              56
  CLUS_2             4              70
  CLUS_3             2              43
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MUC17 MUTATED        3      0      3      3      0      3
  MUC17 WILD-TYPE     61     29     18     57     25     56
D34V8, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             3              61
  CLUS_2             0              29
  CLUS_3             3              18
  CLUS_4             3              57
  CLUS_5             0              25
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = CDKN1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1B MUTATED        3      1      1
  CDKN1B WILD-TYPE    243     99     73
D35V1, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              3              243
  CLUS_2              1               99
  CLUS_3              1               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1B MUTATED        1      2      2
  CDKN1B WILD-TYPE    141    130    149
D35V2, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              1              141
  CLUS_2              2              130
  CLUS_3              2              149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1B MUTATED        0      2      3
  CDKN1B WILD-TYPE    128    141    150
D35V3, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0              128
  CLUS_2              2              141
  CLUS_3              3              150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1B MUTATED        0      4      1
  CDKN1B WILD-TYPE    153    163    103
D35V4, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0              153
  CLUS_2              4              163
  CLUS_3              1              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1B MUTATED        0      2      3
  CDKN1B WILD-TYPE    144    121    151
D35V5, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0              144
  CLUS_2              2              121
  CLUS_3              3              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN1B MUTATED        0      2      0      3      0
  CDKN1B WILD-TYPE    136     79     52     93     56
D35V6, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0              136
  CLUS_2              2               79
  CLUS_3              0               52
  CLUS_4              3               93
  CLUS_5              0               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1B MUTATED        0      2      0      1
  CDKN1B WILD-TYPE     59     72     45     79
D35V7, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0               59
  CLUS_2              2               72
  CLUS_3              0               45
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN1B MUTATED        0      1      0      2      0      0
  CDKN1B WILD-TYPE     64     28     21     58     25     59
D35V8, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0               64
  CLUS_2              1               28
  CLUS_3              0               21
  CLUS_4              2               58
  CLUS_5              0               25
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = POM121 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        3      0      0
  POM121 WILD-TYPE    243    100     74
D36V1, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              3              243
  CLUS_2              0              100
  CLUS_3              0               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        2      1      0
  POM121 WILD-TYPE    140    131    151
D36V2, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              2              140
  CLUS_2              1              131
  CLUS_3              0              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        1      2      0
  POM121 WILD-TYPE    127    141    153
D36V3, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1              127
  CLUS_2              2              141
  CLUS_3              0              153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        2      1      0
  POM121 WILD-TYPE    151    166    104
D36V4, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              2              151
  CLUS_2              1              166
  CLUS_3              0              104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        1      2      0
  POM121 WILD-TYPE    143    121    154
D36V5, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1              143
  CLUS_2              2              121
  CLUS_3              0              154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POM121 MUTATED        1      1      0      0      1
  POM121 WILD-TYPE    135     80     52     96     55
D36V6, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              1               80
  CLUS_3              0               52
  CLUS_4              0               96
  CLUS_5              1               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POM121 MUTATED        0      0      0      1
  POM121 WILD-TYPE     59     74     45     79
D36V7, multiclass
[1] "Remove cluster labels:" "POM121 MUTATED"        
clus
  POM121 MUTATED POM121 WILD-TYPE 
               1              257 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-5497       TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-5514       TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5522 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-5524       TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-5542       TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-7314       TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-7327       TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-7782       TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-7786       TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-7793       TCGA-EJ-7794       TCGA-EJ-8468       TCGA-EJ-8469 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A8O0 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6347       TCGA-G9-6351 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-6353       TCGA-G9-6354       TCGA-G9-6361       TCGA-G9-6365 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-6369       TCGA-G9-6377       TCGA-G9-6379       TCGA-G9-6498 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-7522       TCGA-G9-7523       TCGA-H9-7775       TCGA-H9-A6BX 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7075       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7081 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7210       TCGA-HC-7212       TCGA-HC-7213 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7232       TCGA-HC-7233 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7745       TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7750       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7820 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7821       TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-8262       TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-A4ZV       TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A6AL 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-A6AN       TCGA-HC-A6AP       TCGA-HC-A6HX       TCGA-HC-A6HY 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-A76W       TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-J4-8200       TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-J4-A67R       TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-J4-A83I       TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-J4-A83M       TCGA-J9-A52B       TCGA-J9-A52C       TCGA-J9-A52E 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-J9-A8CK       TCGA-J9-A8CL       TCGA-J9-A8CM       TCGA-KC-A4BL 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KC-A4BO       TCGA-KC-A4BR       TCGA-KC-A4BV       TCGA-KC-A7F3 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KC-A7FA       TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59Y 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A59Z       TCGA-KK-A5A1       TCGA-KK-A6DY       TCGA-KK-A6E0 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A6E1       TCGA-KK-A6E2       TCGA-KK-A6E4       TCGA-KK-A6E5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A6E7       TCGA-KK-A7AQ       TCGA-KK-A7B0       TCGA-KK-A7B1 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A7B2       TCGA-KK-A7B3       TCGA-KK-A7B4       TCGA-KK-A8I5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A8I6       TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8I9 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A8IA       TCGA-KK-A8IB       TCGA-KK-A8IC       TCGA-KK-A8IG 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A8IH       TCGA-KK-A8IJ       TCGA-KK-A8IL       TCGA-KK-A8IM 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-M7-A720       TCGA-M7-A723       TCGA-M7-A725       TCGA-QU-A6IM 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-QU-A6IO       TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-V1-A8MG 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-V1-A8MJ       TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-V1-A8WV       TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-VN-A88K       TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-VP-A878       TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-VP-A87K       TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-XJ-A83H       TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-XQ-A8TB       TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-YL-A9WH       TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-ZG-A8QZ 
"POM121 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POM121 MUTATED        0      0      0      0      0      1
  POM121 WILD-TYPE     64     29     21     60     25     58
D36V8, multiclass
[1] "Remove cluster labels:" "POM121 MUTATED"        
clus
  POM121 MUTATED POM121 WILD-TYPE 
               1              257 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-5497       TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-5514       TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5522 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-5524       TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-5542       TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-7314       TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-7327       TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-7782       TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-7786       TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-7793       TCGA-EJ-7794       TCGA-EJ-8468       TCGA-EJ-8469 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A8O0 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6347       TCGA-G9-6351 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-6353       TCGA-G9-6354       TCGA-G9-6361       TCGA-G9-6365 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-6369       TCGA-G9-6377       TCGA-G9-6379       TCGA-G9-6498 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-G9-7522       TCGA-G9-7523       TCGA-H9-7775       TCGA-H9-A6BX 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7075       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7081 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7210       TCGA-HC-7212       TCGA-HC-7213 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7232       TCGA-HC-7233 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7745       TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7750       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7820 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-7821       TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-8262       TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-A4ZV       TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A6AL 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-A6AN       TCGA-HC-A6AP       TCGA-HC-A6HX       TCGA-HC-A6HY 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HC-A76W       TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-J4-8200       TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-J4-A67R       TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-J4-A83I       TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-J4-A83M       TCGA-J9-A52B       TCGA-J9-A52C       TCGA-J9-A52E 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-J9-A8CK       TCGA-J9-A8CL       TCGA-J9-A8CM       TCGA-KC-A4BL 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KC-A4BO       TCGA-KC-A4BR       TCGA-KC-A4BV       TCGA-KC-A7F3 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KC-A7FA       TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59Y 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A59Z       TCGA-KK-A5A1       TCGA-KK-A6DY       TCGA-KK-A6E0 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A6E1       TCGA-KK-A6E2       TCGA-KK-A6E4       TCGA-KK-A6E5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A6E7       TCGA-KK-A7AQ       TCGA-KK-A7B0       TCGA-KK-A7B1 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A7B2       TCGA-KK-A7B3       TCGA-KK-A7B4       TCGA-KK-A8I5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A8I6       TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8I9 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A8IA       TCGA-KK-A8IB       TCGA-KK-A8IC       TCGA-KK-A8IG 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-KK-A8IH       TCGA-KK-A8IJ       TCGA-KK-A8IL       TCGA-KK-A8IM 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-M7-A720       TCGA-M7-A723       TCGA-M7-A725       TCGA-QU-A6IM 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-QU-A6IO       TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-V1-A8MG 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-V1-A8MJ       TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-V1-A8WV       TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-VN-A88K       TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-VP-A878       TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-VP-A87K       TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-XJ-A83H       TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-XQ-A8TB       TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-YL-A9WH       TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-ZG-A8QZ 
"POM121 WILD-TYPE" 

Clustering(37) Variable = ESCO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO1 MUTATED        3      0      1
  ESCO1 WILD-TYPE    243    100     73
D37V1, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             3             243
  CLUS_2             0             100
  CLUS_3             1              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO1 MUTATED        2      1      1
  ESCO1 WILD-TYPE    140    131    150
D37V2, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             2             140
  CLUS_2             1             131
  CLUS_3             1             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO1 MUTATED        3      0      1
  ESCO1 WILD-TYPE    125    143    152
D37V3, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             3             125
  CLUS_2             0             143
  CLUS_3             1             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO1 MUTATED        3      0      1
  ESCO1 WILD-TYPE    150    167    103
D37V4, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             3             150
  CLUS_2             0             167
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO1 MUTATED        3      0      1
  ESCO1 WILD-TYPE    141    123    153
D37V5, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             3             141
  CLUS_2             0             123
  CLUS_3             1             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESCO1 MUTATED        2      0      1      0      1
  ESCO1 WILD-TYPE    134     81     51     96     55
D37V6, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             0              81
  CLUS_3             1              51
  CLUS_4             0              96
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO1 MUTATED        1      0      0      1
  ESCO1 WILD-TYPE     58     74     45     79
D37V7, multiclass
[1] "Remove cluster labels:" "ESCO1 MUTATED"         
clus
  ESCO1 MUTATED ESCO1 WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5794      TCGA-EJ-5494      TCGA-EJ-5497 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512      TCGA-EJ-5514 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522      TCGA-EJ-5524 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527      TCGA-EJ-5542 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125      TCGA-EJ-7314 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321      TCGA-EJ-7327 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331      TCGA-EJ-7782 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474      TCGA-EJ-A46B 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G      TCGA-EJ-A46H 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J      TCGA-EJ-A6RA 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ      TCGA-EJ-A7NK 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO      TCGA-EJ-A8FP 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A8O0 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6338 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347      TCGA-G9-6351 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361      TCGA-G9-6365 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379      TCGA-G9-6498 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519      TCGA-G9-7521 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775      TCGA-H9-A6BX 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7075      TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7081 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7745      TCGA-HC-7748      TCGA-HC-7749      TCGA-HC-7750 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820      TCGA-HC-7821 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-8258      TCGA-HC-8260      TCGA-HC-8261      TCGA-HC-8262 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266      TCGA-HC-A4ZV 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL      TCGA-HC-A6AN 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY      TCGA-HC-A76W 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168      TCGA-HI-7169 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q      TCGA-J4-A67R 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3      TCGA-J4-A83I 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L      TCGA-J4-A83M 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E      TCGA-J9-A8CK 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL      TCGA-KC-A4BO 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7FA 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KC-A7FE      TCGA-KK-A59V      TCGA-KK-A59Y      TCGA-KK-A59Z 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0      TCGA-KK-A6E1 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5      TCGA-KK-A6E7 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM      TCGA-M7-A720 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM      TCGA-QU-A6IO 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL      TCGA-V1-A8WV 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I      TCGA-VN-A88K 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872      TCGA-VP-A878 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR      TCGA-XJ-A83H 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ      TCGA-XQ-A8TB 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ESCO1 MUTATED        0      0      0      1      0      1
  ESCO1 WILD-TYPE     64     29     21     59     25     58
D37V8, multiclass
[1] "Remove cluster labels:" "ESCO1 MUTATED"         
clus
  ESCO1 MUTATED ESCO1 WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5794      TCGA-EJ-5494      TCGA-EJ-5497 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512      TCGA-EJ-5514 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522      TCGA-EJ-5524 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527      TCGA-EJ-5542 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125      TCGA-EJ-7314 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321      TCGA-EJ-7327 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331      TCGA-EJ-7782 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474      TCGA-EJ-A46B 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G      TCGA-EJ-A46H 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J      TCGA-EJ-A6RA 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ      TCGA-EJ-A7NK 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO      TCGA-EJ-A8FP 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A8O0 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6338 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347      TCGA-G9-6351 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361      TCGA-G9-6365 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379      TCGA-G9-6498 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519      TCGA-G9-7521 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775      TCGA-H9-A6BX 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7075      TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7081 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7745      TCGA-HC-7748      TCGA-HC-7749      TCGA-HC-7750 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820      TCGA-HC-7821 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-8258      TCGA-HC-8260      TCGA-HC-8261      TCGA-HC-8262 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266      TCGA-HC-A4ZV 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL      TCGA-HC-A6AN 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY      TCGA-HC-A76W 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168      TCGA-HI-7169 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q      TCGA-J4-A67R 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3      TCGA-J4-A83I 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L      TCGA-J4-A83M 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E      TCGA-J9-A8CK 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL      TCGA-KC-A4BO 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7FA 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KC-A7FE      TCGA-KK-A59V      TCGA-KK-A59Y      TCGA-KK-A59Z 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0      TCGA-KK-A6E1 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5      TCGA-KK-A6E7 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM      TCGA-M7-A720 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM      TCGA-QU-A6IO 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL      TCGA-V1-A8WV 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I      TCGA-VN-A88K 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872      TCGA-VP-A878 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR      TCGA-XJ-A83H 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ      TCGA-XQ-A8TB 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" "ESCO1 WILD-TYPE" 

Clustering(38) Variable = MYOT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYOT MUTATED        2      0      1
  MYOT WILD-TYPE    244    100     73
D38V1, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            2            244
  CLUS_2            0            100
  CLUS_3            1             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYOT MUTATED        0      4      0
  MYOT WILD-TYPE    142    128    151
D38V2, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            0            142
  CLUS_2            4            128
  CLUS_3            0            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYOT MUTATED        0      3      1
  MYOT WILD-TYPE    128    140    152
D38V3, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            0            128
  CLUS_2            3            140
  CLUS_3            1            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYOT MUTATED        1      3      0
  MYOT WILD-TYPE    152    164    104
D38V4, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            1            152
  CLUS_2            3            164
  CLUS_3            0            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYOT MUTATED        0      2      2
  MYOT WILD-TYPE    144    121    152
D38V5, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            0            144
  CLUS_2            2            121
  CLUS_3            2            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYOT MUTATED        0      1      0      3      0
  MYOT WILD-TYPE    136     80     52     93     56
D38V6, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            0            136
  CLUS_2            1             80
  CLUS_3            0             52
  CLUS_4            3             93
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOT MUTATED        0      2      1      0
  MYOT WILD-TYPE     59     72     44     80
D38V7, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            0             59
  CLUS_2            2             72
  CLUS_3            1             44
  CLUS_4            0             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYOT MUTATED        0      0      1      2      0      0
  MYOT WILD-TYPE     64     29     20     58     25     59
D38V8, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            0             64
  CLUS_2            0             29
  CLUS_3            1             20
  CLUS_4            2             58
  CLUS_5            0             25
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = L1CAM MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        3      2      2
  L1CAM WILD-TYPE    243     98     72
D39V1, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             3             243
  CLUS_2             2              98
  CLUS_3             2              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        2      5      0
  L1CAM WILD-TYPE    140    127    151
D39V2, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             2             140
  CLUS_2             5             127
  CLUS_3             0             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        1      4      2
  L1CAM WILD-TYPE    127    139    151
D39V3, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             1             127
  CLUS_2             4             139
  CLUS_3             2             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        2      5      0
  L1CAM WILD-TYPE    151    162    104
D39V4, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             2             151
  CLUS_2             5             162
  CLUS_3             0             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        2      2      3
  L1CAM WILD-TYPE    142    121    151
D39V5, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             2             142
  CLUS_2             2             121
  CLUS_3             3             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  L1CAM MUTATED        0      4      0      3      0
  L1CAM WILD-TYPE    136     77     52     93     56
D39V6, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             0             136
  CLUS_2             4              77
  CLUS_3             0              52
  CLUS_4             3              93
  CLUS_5             0              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  L1CAM MUTATED        1      2      2      0
  L1CAM WILD-TYPE     58     72     43     80
D39V7, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             1              58
  CLUS_2             2              72
  CLUS_3             2              43
  CLUS_4             0              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  L1CAM MUTATED        0      2      0      2      0      1
  L1CAM WILD-TYPE     64     27     21     58     25     58
D39V8, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             0              64
  CLUS_2             2              27
  CLUS_3             0              21
  CLUS_4             2              58
  CLUS_5             0              25
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = FAM47C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        6      0      3
  FAM47C WILD-TYPE    240    100     71
D40V1, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              6              240
  CLUS_2              0              100
  CLUS_3              3               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        4      1      4
  FAM47C WILD-TYPE    138    131    147
D40V2, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              4              138
  CLUS_2              1              131
  CLUS_3              4              147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        2      4      3
  FAM47C WILD-TYPE    126    139    150
D40V3, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              2              126
  CLUS_2              4              139
  CLUS_3              3              150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        3      5      1
  FAM47C WILD-TYPE    150    162    103
D40V4, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              3              150
  CLUS_2              5              162
  CLUS_3              1              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        3      4      2
  FAM47C WILD-TYPE    141    119    152
D40V5, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              3              141
  CLUS_2              4              119
  CLUS_3              2              152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        3      2      0      1      3
  FAM47C WILD-TYPE    133     79     52     95     53
D40V6, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              3              133
  CLUS_2              2               79
  CLUS_3              0               52
  CLUS_4              1               95
  CLUS_5              3               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        1      2      2      2
  FAM47C WILD-TYPE     58     72     43     78
D40V7, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              1               58
  CLUS_2              2               72
  CLUS_3              2               43
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM47C MUTATED        2      2      0      0      1      2
  FAM47C WILD-TYPE     62     27     21     60     24     57
D40V8, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              2               62
  CLUS_2              2               27
  CLUS_3              0               21
  CLUS_4              0               60
  CLUS_5              1               24
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = CR1L MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED        3      2      0
  CR1L WILD-TYPE    243     98     74
D41V1, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            3            243
  CLUS_2            2             98
  CLUS_3            0             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED        1      3      1
  CR1L WILD-TYPE    141    129    150
D41V2, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1            141
  CLUS_2            3            129
  CLUS_3            1            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED        1      1      3
  CR1L WILD-TYPE    127    142    150
D41V3, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1            127
  CLUS_2            1            142
  CLUS_3            3            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED        0      4      1
  CR1L WILD-TYPE    153    163    103
D41V4, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            0            153
  CLUS_2            4            163
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED        1      1      3
  CR1L WILD-TYPE    143    122    151
D41V5, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1            143
  CLUS_2            1            122
  CLUS_3            3            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        2      1      0      2      0
  CR1L WILD-TYPE    134     80     52     94     56
D41V6, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            2            134
  CLUS_2            1             80
  CLUS_3            0             52
  CLUS_4            2             94
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1L MUTATED        0      0      1      0
  CR1L WILD-TYPE     59     74     44     80
D41V7, multiclass
[1] "Remove cluster labels:" "CR1L MUTATED"          
clus
  CR1L MUTATED CR1L WILD-TYPE 
             1            257 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6333     TCGA-G9-6336 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6347 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6354     TCGA-G9-6361 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-G9-6365     TCGA-G9-6369     TCGA-G9-6377     TCGA-G9-6379 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-H9-A6BX     TCGA-HC-7075     TCGA-HC-7078     TCGA-HC-7079 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210     TCGA-HC-7212 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7744     TCGA-HC-7745     TCGA-HC-7747     TCGA-HC-7748 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7817     TCGA-HC-7818 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7820     TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-8261     TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-8266     TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-A6AL     TCGA-HC-A6AN     TCGA-HC-A6AP     TCGA-HC-A6HX 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-A6HY     TCGA-HC-A76W     TCGA-HC-A8D0     TCGA-HC-A8D1 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-J4-A67Q     TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-J4-A83L     TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A52C 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-J9-A52E     TCGA-J9-A8CK     TCGA-J9-A8CL     TCGA-J9-A8CM 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KC-A4BL     TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59V 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6DY 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E4 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A6E5     TCGA-KK-A6E7     TCGA-KK-A7AQ     TCGA-KK-A7B0 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3     TCGA-KK-A7B4 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I7     TCGA-KK-A8I8 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ     TCGA-KK-A8IL 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A8IM     TCGA-M7-A720     TCGA-M7-A723     TCGA-M7-A725 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-QU-A6IM     TCGA-QU-A6IO     TCGA-QU-A6IP     TCGA-TK-A8OK 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-V1-A8WL     TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-VP-A878     TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-VP-A87K     TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-XQ-A8TB     TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-YL-A9WH     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-ZG-A8QZ 
"CR1L WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR1L MUTATED        0      1      0      0      0      0
  CR1L WILD-TYPE     64     28     21     60     25     59
D41V8, multiclass
[1] "Remove cluster labels:" "CR1L MUTATED"          
clus
  CR1L MUTATED CR1L WILD-TYPE 
             1            257 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6333     TCGA-G9-6336 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6347 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6354     TCGA-G9-6361 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-G9-6365     TCGA-G9-6369     TCGA-G9-6377     TCGA-G9-6379 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-H9-A6BX     TCGA-HC-7075     TCGA-HC-7078     TCGA-HC-7079 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210     TCGA-HC-7212 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7744     TCGA-HC-7745     TCGA-HC-7747     TCGA-HC-7748 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7817     TCGA-HC-7818 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-7820     TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-8261     TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-8266     TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-A6AL     TCGA-HC-A6AN     TCGA-HC-A6AP     TCGA-HC-A6HX 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HC-A6HY     TCGA-HC-A76W     TCGA-HC-A8D0     TCGA-HC-A8D1 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-J4-A67Q     TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-J4-A83L     TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A52C 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-J9-A52E     TCGA-J9-A8CK     TCGA-J9-A8CL     TCGA-J9-A8CM 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KC-A4BL     TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59V 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6DY 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E4 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A6E5     TCGA-KK-A6E7     TCGA-KK-A7AQ     TCGA-KK-A7B0 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3     TCGA-KK-A7B4 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I7     TCGA-KK-A8I8 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ     TCGA-KK-A8IL 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-KK-A8IM     TCGA-M7-A720     TCGA-M7-A723     TCGA-M7-A725 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-QU-A6IM     TCGA-QU-A6IO     TCGA-QU-A6IP     TCGA-TK-A8OK 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-V1-A8WL     TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-VP-A878     TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-VP-A87K     TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-XQ-A8TB     TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-YL-A9WH     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-ZG-A8QZ 
"CR1L WILD-TYPE" 

Clustering(42) Variable = FAM120B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM120B MUTATED        1      2      0
  FAM120B WILD-TYPE    245     98     74
D42V1, multiclass
        clus
vv       FAM120B MUTATED FAM120B WILD-TYPE
  CLUS_1               1               245
  CLUS_2               2                98
  CLUS_3               0                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM120B MUTATED        1      1      1
  FAM120B WILD-TYPE    141    131    150
D42V2, multiclass
        clus
vv       FAM120B MUTATED FAM120B WILD-TYPE
  CLUS_1               1               141
  CLUS_2               1               131
  CLUS_3               1               150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM120B MUTATED        0      2      1
  FAM120B WILD-TYPE    128    141    152
D42V3, multiclass
        clus
vv       FAM120B MUTATED FAM120B WILD-TYPE
  CLUS_1               0               128
  CLUS_2               2               141
  CLUS_3               1               152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM120B MUTATED        1      2      0
  FAM120B WILD-TYPE    152    165    104
D42V4, multiclass
        clus
vv       FAM120B MUTATED FAM120B WILD-TYPE
  CLUS_1               1               152
  CLUS_2               2               165
  CLUS_3               0               104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM120B MUTATED        0      2      1
  FAM120B WILD-TYPE    144    121    153
D42V5, multiclass
        clus
vv       FAM120B MUTATED FAM120B WILD-TYPE
  CLUS_1               0               144
  CLUS_2               2               121
  CLUS_3               1               153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM120B MUTATED        0      0      1      0      2
  FAM120B WILD-TYPE    136     81     51     96     54
D42V6, multiclass
        clus
vv       FAM120B MUTATED FAM120B WILD-TYPE
  CLUS_1               0               136
  CLUS_2               0                81
  CLUS_3               1                51
  CLUS_4               0                96
  CLUS_5               2                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM120B MUTATED        0      0      0      2
  FAM120B WILD-TYPE     59     74     45     78
D42V7, multiclass
[1] "Remove cluster labels:" "FAM120B MUTATED"       
clus
  FAM120B MUTATED FAM120B WILD-TYPE 
                2               256 
       TCGA-2A-A8VL        TCGA-2A-A8VV        TCGA-2A-A8W3        TCGA-CH-5737 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-CH-5738        TCGA-CH-5739        TCGA-CH-5741        TCGA-CH-5746 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-CH-5750        TCGA-CH-5752        TCGA-CH-5762        TCGA-CH-5763 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-CH-5764        TCGA-CH-5766        TCGA-CH-5769        TCGA-CH-5772 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-CH-5789        TCGA-CH-5792        TCGA-CH-5794        TCGA-EJ-5494 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-5497        TCGA-EJ-5504        TCGA-EJ-5506        TCGA-EJ-5512 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-5514        TCGA-EJ-5516        TCGA-EJ-5517        TCGA-EJ-5522 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-5524        TCGA-EJ-5525        TCGA-EJ-5526        TCGA-EJ-5527 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-5542        TCGA-EJ-7115        TCGA-EJ-7125        TCGA-EJ-7315 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-7317        TCGA-EJ-7321        TCGA-EJ-7327        TCGA-EJ-7328 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-7330        TCGA-EJ-7331        TCGA-EJ-7782        TCGA-EJ-7783 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-7784        TCGA-EJ-7785        TCGA-EJ-7786        TCGA-EJ-7788 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-7791        TCGA-EJ-7792        TCGA-EJ-7793        TCGA-EJ-7794 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-7797        TCGA-EJ-8468        TCGA-EJ-8469        TCGA-EJ-8470 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-8472        TCGA-EJ-8474        TCGA-EJ-A46B        TCGA-EJ-A46D 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-A46E        TCGA-EJ-A46G        TCGA-EJ-A46H        TCGA-EJ-A46I 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-A65F        TCGA-EJ-A65J        TCGA-EJ-A6RA        TCGA-EJ-A6RC 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-A7NH        TCGA-EJ-A7NJ        TCGA-EJ-A7NK        TCGA-EJ-A7NM 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-A8FN        TCGA-EJ-A8FO        TCGA-EJ-A8FP        TCGA-EJ-A8FU 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-FC-7708        TCGA-FC-7961        TCGA-FC-A8O0        TCGA-G9-6329 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-6333        TCGA-G9-6336        TCGA-G9-6338        TCGA-G9-6339 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-6342        TCGA-G9-6347        TCGA-G9-6351        TCGA-G9-6353 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-6354        TCGA-G9-6361        TCGA-G9-6365        TCGA-G9-6369 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-6377        TCGA-G9-6379        TCGA-G9-6498        TCGA-G9-6499 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-7510        TCGA-G9-7519        TCGA-G9-7521        TCGA-G9-7522 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-7523        TCGA-H9-7775        TCGA-H9-A6BX        TCGA-HC-7075 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7078        TCGA-HC-7079        TCGA-HC-7081        TCGA-HC-7209 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7210        TCGA-HC-7212        TCGA-HC-7213        TCGA-HC-7230 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7231        TCGA-HC-7232        TCGA-HC-7233        TCGA-HC-7737 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7740        TCGA-HC-7742        TCGA-HC-7744        TCGA-HC-7745 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7747        TCGA-HC-7748        TCGA-HC-7749        TCGA-HC-7750 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7817        TCGA-HC-7818        TCGA-HC-7820        TCGA-HC-7821 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-8258        TCGA-HC-8260        TCGA-HC-8261        TCGA-HC-8262 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-8264        TCGA-HC-8265        TCGA-HC-8266        TCGA-HC-A4ZV 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-A631        TCGA-HC-A632        TCGA-HC-A6AL        TCGA-HC-A6AN 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-A6AP        TCGA-HC-A6HX        TCGA-HC-A6HY        TCGA-HC-A76W 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-A8D0        TCGA-HC-A8D1        TCGA-HI-7168        TCGA-HI-7169 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HI-7170        TCGA-HI-7171        TCGA-J4-8198        TCGA-J4-8200 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-J4-A67L        TCGA-J4-A67M        TCGA-J4-A67Q        TCGA-J4-A67R 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-J4-A67T        TCGA-J4-A6G1        TCGA-J4-A6G3        TCGA-J4-A83I 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-J4-A83J        TCGA-J4-A83K        TCGA-J4-A83L        TCGA-J4-A83M 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-J9-A52B        TCGA-J9-A52C        TCGA-J9-A52E        TCGA-J9-A8CK 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-J9-A8CL        TCGA-J9-A8CM        TCGA-KC-A4BL        TCGA-KC-A4BO 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KC-A4BR        TCGA-KC-A4BV        TCGA-KC-A7F3        TCGA-KC-A7FA 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KC-A7FE        TCGA-KK-A59V        TCGA-KK-A59Y        TCGA-KK-A59Z 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A5A1        TCGA-KK-A6DY        TCGA-KK-A6E0        TCGA-KK-A6E1 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A6E2        TCGA-KK-A6E4        TCGA-KK-A6E5        TCGA-KK-A6E7 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A7AQ        TCGA-KK-A7B0        TCGA-KK-A7B1        TCGA-KK-A7B2 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A7B3        TCGA-KK-A7B4        TCGA-KK-A8I5        TCGA-KK-A8I6 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A8I7        TCGA-KK-A8I8        TCGA-KK-A8I9        TCGA-KK-A8IA 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A8IB        TCGA-KK-A8IC        TCGA-KK-A8IG        TCGA-KK-A8IH 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A8IJ        TCGA-KK-A8IL        TCGA-KK-A8IM        TCGA-M7-A720 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-M7-A723        TCGA-M7-A725        TCGA-QU-A6IM        TCGA-QU-A6IO 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-QU-A6IP        TCGA-TK-A8OK        TCGA-V1-A8MG        TCGA-V1-A8MJ 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-V1-A8MK        TCGA-V1-A8MM        TCGA-V1-A8WL        TCGA-V1-A8WV 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-V1-A8WW        TCGA-V1-A8X3        TCGA-VN-A88I        TCGA-VN-A88K 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-VN-A88L        TCGA-VN-A88P        TCGA-VP-A872        TCGA-VP-A878 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-VP-A879        TCGA-VP-A87C        TCGA-VP-A87E        TCGA-VP-A87K 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-X4-A8KQ        TCGA-X4-A8KS        TCGA-XA-A8JR        TCGA-XJ-A83H 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-XJ-A9DI        TCGA-XJ-A9DK        TCGA-XJ-A9DQ        TCGA-XQ-A8TB 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-Y6-A8TL        TCGA-YL-A8HJ        TCGA-YL-A8HK        TCGA-YL-A8HO 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-YL-A8S8        TCGA-YL-A8SF        TCGA-YL-A8SH        TCGA-YL-A8SJ 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-YL-A8SK        TCGA-YL-A8SO        TCGA-YL-A8SR        TCGA-YL-A9WH 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-ZG-A8QW        TCGA-ZG-A8QX        TCGA-ZG-A8QY        TCGA-ZG-A8QZ 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM120B MUTATED        0      0      0      1      0      1
  FAM120B WILD-TYPE     64     29     21     59     25     58
D42V8, multiclass
[1] "Remove cluster labels:" "FAM120B MUTATED"       
clus
  FAM120B MUTATED FAM120B WILD-TYPE 
                2               256 
       TCGA-2A-A8VL        TCGA-2A-A8VV        TCGA-2A-A8W3        TCGA-CH-5737 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-CH-5738        TCGA-CH-5739        TCGA-CH-5741        TCGA-CH-5746 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-CH-5750        TCGA-CH-5752        TCGA-CH-5762        TCGA-CH-5763 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-CH-5764        TCGA-CH-5766        TCGA-CH-5769        TCGA-CH-5772 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-CH-5789        TCGA-CH-5792        TCGA-CH-5794        TCGA-EJ-5494 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-5497        TCGA-EJ-5504        TCGA-EJ-5506        TCGA-EJ-5512 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-5514        TCGA-EJ-5516        TCGA-EJ-5517        TCGA-EJ-5522 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-5524        TCGA-EJ-5525        TCGA-EJ-5526        TCGA-EJ-5527 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-5542        TCGA-EJ-7115        TCGA-EJ-7125        TCGA-EJ-7315 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-7317        TCGA-EJ-7321        TCGA-EJ-7327        TCGA-EJ-7328 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-7330        TCGA-EJ-7331        TCGA-EJ-7782        TCGA-EJ-7783 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-7784        TCGA-EJ-7785        TCGA-EJ-7786        TCGA-EJ-7788 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-7791        TCGA-EJ-7792        TCGA-EJ-7793        TCGA-EJ-7794 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-7797        TCGA-EJ-8468        TCGA-EJ-8469        TCGA-EJ-8470 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-8472        TCGA-EJ-8474        TCGA-EJ-A46B        TCGA-EJ-A46D 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-A46E        TCGA-EJ-A46G        TCGA-EJ-A46H        TCGA-EJ-A46I 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-A65F        TCGA-EJ-A65J        TCGA-EJ-A6RA        TCGA-EJ-A6RC 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-A7NH        TCGA-EJ-A7NJ        TCGA-EJ-A7NK        TCGA-EJ-A7NM 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-EJ-A8FN        TCGA-EJ-A8FO        TCGA-EJ-A8FP        TCGA-EJ-A8FU 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-FC-7708        TCGA-FC-7961        TCGA-FC-A8O0        TCGA-G9-6329 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-6333        TCGA-G9-6336        TCGA-G9-6338        TCGA-G9-6339 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-6342        TCGA-G9-6347        TCGA-G9-6351        TCGA-G9-6353 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-6354        TCGA-G9-6361        TCGA-G9-6365        TCGA-G9-6369 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-6377        TCGA-G9-6379        TCGA-G9-6498        TCGA-G9-6499 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-7510        TCGA-G9-7519        TCGA-G9-7521        TCGA-G9-7522 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-G9-7523        TCGA-H9-7775        TCGA-H9-A6BX        TCGA-HC-7075 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7078        TCGA-HC-7079        TCGA-HC-7081        TCGA-HC-7209 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7210        TCGA-HC-7212        TCGA-HC-7213        TCGA-HC-7230 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7231        TCGA-HC-7232        TCGA-HC-7233        TCGA-HC-7737 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7740        TCGA-HC-7742        TCGA-HC-7744        TCGA-HC-7745 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7747        TCGA-HC-7748        TCGA-HC-7749        TCGA-HC-7750 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-7817        TCGA-HC-7818        TCGA-HC-7820        TCGA-HC-7821 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-8258        TCGA-HC-8260        TCGA-HC-8261        TCGA-HC-8262 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-8264        TCGA-HC-8265        TCGA-HC-8266        TCGA-HC-A4ZV 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-A631        TCGA-HC-A632        TCGA-HC-A6AL        TCGA-HC-A6AN 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-A6AP        TCGA-HC-A6HX        TCGA-HC-A6HY        TCGA-HC-A76W 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HC-A8D0        TCGA-HC-A8D1        TCGA-HI-7168        TCGA-HI-7169 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-HI-7170        TCGA-HI-7171        TCGA-J4-8198        TCGA-J4-8200 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-J4-A67L        TCGA-J4-A67M        TCGA-J4-A67Q        TCGA-J4-A67R 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-J4-A67T        TCGA-J4-A6G1        TCGA-J4-A6G3        TCGA-J4-A83I 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-J4-A83J        TCGA-J4-A83K        TCGA-J4-A83L        TCGA-J4-A83M 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-J9-A52B        TCGA-J9-A52C        TCGA-J9-A52E        TCGA-J9-A8CK 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-J9-A8CL        TCGA-J9-A8CM        TCGA-KC-A4BL        TCGA-KC-A4BO 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KC-A4BR        TCGA-KC-A4BV        TCGA-KC-A7F3        TCGA-KC-A7FA 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KC-A7FE        TCGA-KK-A59V        TCGA-KK-A59Y        TCGA-KK-A59Z 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A5A1        TCGA-KK-A6DY        TCGA-KK-A6E0        TCGA-KK-A6E1 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A6E2        TCGA-KK-A6E4        TCGA-KK-A6E5        TCGA-KK-A6E7 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A7AQ        TCGA-KK-A7B0        TCGA-KK-A7B1        TCGA-KK-A7B2 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A7B3        TCGA-KK-A7B4        TCGA-KK-A8I5        TCGA-KK-A8I6 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A8I7        TCGA-KK-A8I8        TCGA-KK-A8I9        TCGA-KK-A8IA 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A8IB        TCGA-KK-A8IC        TCGA-KK-A8IG        TCGA-KK-A8IH 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-KK-A8IJ        TCGA-KK-A8IL        TCGA-KK-A8IM        TCGA-M7-A720 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-M7-A723        TCGA-M7-A725        TCGA-QU-A6IM        TCGA-QU-A6IO 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-QU-A6IP        TCGA-TK-A8OK        TCGA-V1-A8MG        TCGA-V1-A8MJ 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-V1-A8MK        TCGA-V1-A8MM        TCGA-V1-A8WL        TCGA-V1-A8WV 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-V1-A8WW        TCGA-V1-A8X3        TCGA-VN-A88I        TCGA-VN-A88K 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-VN-A88L        TCGA-VN-A88P        TCGA-VP-A872        TCGA-VP-A878 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-VP-A879        TCGA-VP-A87C        TCGA-VP-A87E        TCGA-VP-A87K 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-X4-A8KQ        TCGA-X4-A8KS        TCGA-XA-A8JR        TCGA-XJ-A83H 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-XJ-A9DI        TCGA-XJ-A9DK        TCGA-XJ-A9DQ        TCGA-XQ-A8TB 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-Y6-A8TL        TCGA-YL-A8HJ        TCGA-YL-A8HK        TCGA-YL-A8HO 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-YL-A8S8        TCGA-YL-A8SF        TCGA-YL-A8SH        TCGA-YL-A8SJ 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-YL-A8SK        TCGA-YL-A8SO        TCGA-YL-A8SR        TCGA-YL-A9WH 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 
       TCGA-ZG-A8QW        TCGA-ZG-A8QX        TCGA-ZG-A8QY        TCGA-ZG-A8QZ 
"FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" "FAM120B WILD-TYPE" 

Clustering(43) Variable = EDC4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        0      2      1
  EDC4 WILD-TYPE    246     98     73
D43V1, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            0            246
  CLUS_2            2             98
  CLUS_3            1             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        1      2      0
  EDC4 WILD-TYPE    141    130    151
D43V2, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            1            141
  CLUS_2            2            130
  CLUS_3            0            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        1      1      1
  EDC4 WILD-TYPE    127    142    152
D43V3, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            1            127
  CLUS_2            1            142
  CLUS_3            1            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        0      2      1
  EDC4 WILD-TYPE    153    165    103
D43V4, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            0            153
  CLUS_2            2            165
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        0      1      2
  EDC4 WILD-TYPE    144    122    152
D43V5, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            0            144
  CLUS_2            1            122
  CLUS_3            2            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDC4 MUTATED        0      0      0      0      3
  EDC4 WILD-TYPE    136     81     52     96     53
D43V6, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            0             81
  CLUS_3            0             52
  CLUS_4            0             96
  CLUS_5            3             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EDC4 MUTATED        0      0      0      3
  EDC4 WILD-TYPE     59     74     45     77
D43V7, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            0             59
  CLUS_2            0             74
  CLUS_3            0             45
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EDC4 MUTATED        0      0      0      1      0      2
  EDC4 WILD-TYPE     64     29     21     59     25     57
D43V8, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            0             64
  CLUS_2            0             29
  CLUS_3            0             21
  CLUS_4            1             59
  CLUS_5            0             25
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = KIRREL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIRREL MUTATED        3      1      1
  KIRREL WILD-TYPE    243     99     73
D44V1, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              3              243
  CLUS_2              1               99
  CLUS_3              1               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIRREL MUTATED        2      2      1
  KIRREL WILD-TYPE    140    130    150
D44V2, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              2              140
  CLUS_2              2              130
  CLUS_3              1              150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIRREL MUTATED        3      1      1
  KIRREL WILD-TYPE    125    142    152
D44V3, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              3              125
  CLUS_2              1              142
  CLUS_3              1              152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIRREL MUTATED        3      2      0
  KIRREL WILD-TYPE    150    165    104
D44V4, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              3              150
  CLUS_2              2              165
  CLUS_3              0              104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIRREL MUTATED        2      1      2
  KIRREL WILD-TYPE    142    122    152
D44V5, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              2              142
  CLUS_2              1              122
  CLUS_3              2              152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL MUTATED        3      0      0      1      1
  KIRREL WILD-TYPE    133     81     52     95     55
D44V6, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              3              133
  CLUS_2              0               81
  CLUS_3              0               52
  CLUS_4              1               95
  CLUS_5              1               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED        0      1      0      2
  KIRREL WILD-TYPE     59     73     45     78
D44V7, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              0               59
  CLUS_2              1               73
  CLUS_3              0               45
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIRREL MUTATED        1      0      0      1      0      1
  KIRREL WILD-TYPE     63     29     21     59     25     58
D44V8, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              1               63
  CLUS_2              0               29
  CLUS_3              0               21
  CLUS_4              1               59
  CLUS_5              0               25
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = TCERG1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCERG1 MUTATED        3      1      0
  TCERG1 WILD-TYPE    243     99     74
D45V1, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              3              243
  CLUS_2              1               99
  CLUS_3              0               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCERG1 MUTATED        1      0      3
  TCERG1 WILD-TYPE    141    132    148
D45V2, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              1              141
  CLUS_2              0              132
  CLUS_3              3              148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCERG1 MUTATED        1      0      3
  TCERG1 WILD-TYPE    127    143    150
D45V3, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              1              127
  CLUS_2              0              143
  CLUS_3              3              150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCERG1 MUTATED        1      1      2
  TCERG1 WILD-TYPE    152    166    102
D45V4, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              1              152
  CLUS_2              1              166
  CLUS_3              2              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCERG1 MUTATED        2      1      1
  TCERG1 WILD-TYPE    142    122    153
D45V5, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              2              142
  CLUS_2              1              122
  CLUS_3              1              153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCERG1 MUTATED        1      0      0      1      2
  TCERG1 WILD-TYPE    135     81     52     95     54
D45V6, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              0               81
  CLUS_3              0               52
  CLUS_4              1               95
  CLUS_5              2               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCERG1 MUTATED        1      1      0      2
  TCERG1 WILD-TYPE     58     73     45     78
D45V7, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              1               73
  CLUS_3              0               45
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCERG1 MUTATED        0      0      2      0      1      1
  TCERG1 WILD-TYPE     64     29     19     60     24     58
D45V8, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              0               64
  CLUS_2              0               29
  CLUS_3              2               19
  CLUS_4              0               60
  CLUS_5              1               24
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = SLC16A6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A6 MUTATED        2      1      1
  SLC16A6 WILD-TYPE    244     99     73
D46V1, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               2               244
  CLUS_2               1                99
  CLUS_3               1                73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A6 MUTATED        0      1      3
  SLC16A6 WILD-TYPE    142    131    148
D46V2, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               0               142
  CLUS_2               1               131
  CLUS_3               3               148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A6 MUTATED        0      1      3
  SLC16A6 WILD-TYPE    128    142    150
D46V3, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               0               128
  CLUS_2               1               142
  CLUS_3               3               150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A6 MUTATED        0      1      3
  SLC16A6 WILD-TYPE    153    166    101
D46V4, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               0               153
  CLUS_2               1               166
  CLUS_3               3               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A6 MUTATED        0      0      4
  SLC16A6 WILD-TYPE    144    123    150
D46V5, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               0               144
  CLUS_2               0               123
  CLUS_3               4               150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC16A6 MUTATED        0      1      1      1      1
  SLC16A6 WILD-TYPE    136     80     51     95     55
D46V6, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               0               136
  CLUS_2               1                80
  CLUS_3               1                51
  CLUS_4               1                95
  CLUS_5               1                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A6 MUTATED        0      2      0      1
  SLC16A6 WILD-TYPE     59     72     45     79
D46V7, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               0                59
  CLUS_2               2                72
  CLUS_3               0                45
  CLUS_4               1                79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC16A6 MUTATED        0      0      0      2      0      1
  SLC16A6 WILD-TYPE     64     29     21     58     25     58
D46V8, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               0                64
  CLUS_2               0                29
  CLUS_3               0                21
  CLUS_4               2                58
  CLUS_5               0                25
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = NKX3-1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX3-1 MUTATED        4      0      0
  NKX3-1 WILD-TYPE    242    100     74
D47V1, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              4              242
  CLUS_2              0              100
  CLUS_3              0               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX3-1 MUTATED        1      1      3
  NKX3-1 WILD-TYPE    141    131    148
D47V2, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              1              141
  CLUS_2              1              131
  CLUS_3              3              148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX3-1 MUTATED        1      2      2
  NKX3-1 WILD-TYPE    127    141    151
D47V3, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              1              127
  CLUS_2              2              141
  CLUS_3              2              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX3-1 MUTATED        1      2      2
  NKX3-1 WILD-TYPE    152    165    102
D47V4, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              1              152
  CLUS_2              2              165
  CLUS_3              2              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX3-1 MUTATED        2      3      0
  NKX3-1 WILD-TYPE    142    120    154
D47V5, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              2              142
  CLUS_2              3              120
  CLUS_3              0              154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKX3-1 MUTATED        2      2      0      0      1
  NKX3-1 WILD-TYPE    134     79     52     96     55
D47V6, multiclass
        clus
vv       NKX3-1 MUTATED NKX3-1 WILD-TYPE
  CLUS_1              2              134
  CLUS_2              2               79
  CLUS_3              0               52
  CLUS_4              0               96
  CLUS_5              1               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKX3-1 MUTATED        2      0      0      0
  NKX3-1 WILD-TYPE     57     74     45     80
D47V7, multiclass
[1] "Remove cluster labels:" "NKX3-1 MUTATED"        
clus
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               2              256 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-EJ-5494       TCGA-EJ-5497 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512       TCGA-EJ-5514 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542       TCGA-EJ-7115 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782       TCGA-EJ-7783 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793       TCGA-EJ-7794 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469       TCGA-EJ-8470 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B       TCGA-EJ-A46D 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H       TCGA-EJ-A46I 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA       TCGA-EJ-A6RC 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK       TCGA-EJ-A7NM 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP       TCGA-EJ-A8FU 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A8O0       TCGA-G9-6329 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338       TCGA-G9-6339 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6342       TCGA-G9-6347       TCGA-G9-6351       TCGA-G9-6353 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6354       TCGA-G9-6361       TCGA-G9-6365       TCGA-G9-6369 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6377       TCGA-G9-6379       TCGA-G9-6498       TCGA-G9-6499 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521       TCGA-G9-7522 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-7523       TCGA-H9-7775       TCGA-H9-A6BX       TCGA-HC-7075 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7081       TCGA-HC-7209 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7210       TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7230 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7231       TCGA-HC-7232       TCGA-HC-7233       TCGA-HC-7737 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744       TCGA-HC-7745 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7820       TCGA-HC-7821 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261       TCGA-HC-8262 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266       TCGA-HC-A4ZV 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AN 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A6AP       TCGA-HC-A6HX       TCGA-HC-A6HY       TCGA-HC-A76W 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168       TCGA-HI-7169 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198       TCGA-J4-8200 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q       TCGA-J4-A67R 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3       TCGA-J4-A83I 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L       TCGA-J4-A83M 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J9-A52B       TCGA-J9-A52C       TCGA-J9-A52E       TCGA-J9-A8CK 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J9-A8CL       TCGA-J9-A8CM       TCGA-KC-A4BL       TCGA-KC-A4BO 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KC-A4BR       TCGA-KC-A4BV       TCGA-KC-A7F3       TCGA-KC-A7FA 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59Y       TCGA-KK-A59Z 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A5A1       TCGA-KK-A6DY       TCGA-KK-A6E0       TCGA-KK-A6E1 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A6E2       TCGA-KK-A6E4       TCGA-KK-A6E5       TCGA-KK-A6E7 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A7AQ       TCGA-KK-A7B0       TCGA-KK-A7B1       TCGA-KK-A7B2 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A7B3       TCGA-KK-A7B4       TCGA-KK-A8I5       TCGA-KK-A8I6 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8I9       TCGA-KK-A8IA 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A8IB       TCGA-KK-A8IC       TCGA-KK-A8IG       TCGA-KK-A8IH 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A8IJ       TCGA-KK-A8IL       TCGA-KK-A8IM       TCGA-M7-A720 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-M7-A723       TCGA-M7-A725       TCGA-QU-A6IM       TCGA-QU-A6IO 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-V1-A8MG       TCGA-V1-A8MJ 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL       TCGA-V1-A8WV 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I       TCGA-VN-A88K 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872       TCGA-VP-A878 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E       TCGA-VP-A87K 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR       TCGA-XJ-A83H 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ       TCGA-XQ-A8TB 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK       TCGA-YL-A8HO 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH       TCGA-YL-A8SJ 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR       TCGA-YL-A9WH 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY       TCGA-ZG-A8QZ 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NKX3-1 MUTATED        0      0      0      0      2      0
  NKX3-1 WILD-TYPE     64     29     21     60     23     59
D47V8, multiclass
[1] "Remove cluster labels:" "NKX3-1 MUTATED"        
clus
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               2              256 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-CH-5737 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-EJ-5494       TCGA-EJ-5497 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512       TCGA-EJ-5514 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542       TCGA-EJ-7115 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782       TCGA-EJ-7783 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793       TCGA-EJ-7794 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469       TCGA-EJ-8470 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B       TCGA-EJ-A46D 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H       TCGA-EJ-A46I 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA       TCGA-EJ-A6RC 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK       TCGA-EJ-A7NM 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP       TCGA-EJ-A8FU 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A8O0       TCGA-G9-6329 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338       TCGA-G9-6339 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6342       TCGA-G9-6347       TCGA-G9-6351       TCGA-G9-6353 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6354       TCGA-G9-6361       TCGA-G9-6365       TCGA-G9-6369 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6377       TCGA-G9-6379       TCGA-G9-6498       TCGA-G9-6499 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521       TCGA-G9-7522 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-7523       TCGA-H9-7775       TCGA-H9-A6BX       TCGA-HC-7075 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7081       TCGA-HC-7209 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7210       TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7230 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7231       TCGA-HC-7232       TCGA-HC-7233       TCGA-HC-7737 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744       TCGA-HC-7745 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7820       TCGA-HC-7821 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-8258       TCGA-HC-8260       TCGA-HC-8261       TCGA-HC-8262 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-8264       TCGA-HC-8265       TCGA-HC-8266       TCGA-HC-A4ZV 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A631       TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AN 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A6AP       TCGA-HC-A6HX       TCGA-HC-A6HY       TCGA-HC-A76W 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A8D0       TCGA-HC-A8D1       TCGA-HI-7168       TCGA-HI-7169 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198       TCGA-J4-8200 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q       TCGA-J4-A67R 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3       TCGA-J4-A83I 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L       TCGA-J4-A83M 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J9-A52B       TCGA-J9-A52C       TCGA-J9-A52E       TCGA-J9-A8CK 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J9-A8CL       TCGA-J9-A8CM       TCGA-KC-A4BL       TCGA-KC-A4BO 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KC-A4BR       TCGA-KC-A4BV       TCGA-KC-A7F3       TCGA-KC-A7FA 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59Y       TCGA-KK-A59Z 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A5A1       TCGA-KK-A6DY       TCGA-KK-A6E0       TCGA-KK-A6E1 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A6E2       TCGA-KK-A6E4       TCGA-KK-A6E5       TCGA-KK-A6E7 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A7AQ       TCGA-KK-A7B0       TCGA-KK-A7B1       TCGA-KK-A7B2 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A7B3       TCGA-KK-A7B4       TCGA-KK-A8I5       TCGA-KK-A8I6 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8I9       TCGA-KK-A8IA 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A8IB       TCGA-KK-A8IC       TCGA-KK-A8IG       TCGA-KK-A8IH 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-KK-A8IJ       TCGA-KK-A8IL       TCGA-KK-A8IM       TCGA-M7-A720 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-M7-A723       TCGA-M7-A725       TCGA-QU-A6IM       TCGA-QU-A6IO 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-V1-A8MG       TCGA-V1-A8MJ 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL       TCGA-V1-A8WV 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-VN-A88I       TCGA-VN-A88K 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872       TCGA-VP-A878 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E       TCGA-VP-A87K 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR       TCGA-XJ-A83H 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ       TCGA-XQ-A8TB 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-Y6-A8TL       TCGA-YL-A8HJ       TCGA-YL-A8HK       TCGA-YL-A8HO 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH       TCGA-YL-A8SJ 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-YL-A8SK       TCGA-YL-A8SO       TCGA-YL-A8SR       TCGA-YL-A9WH 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY       TCGA-ZG-A8QZ 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 

Clustering(48) Variable = RNF17 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF17 MUTATED        3      0      0
  RNF17 WILD-TYPE    243    100     74
D48V1, multiclass
        clus
vv       RNF17 MUTATED RNF17 WILD-TYPE
  CLUS_1             3             243
  CLUS_2             0             100
  CLUS_3             0              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF17 MUTATED        1      0      2
  RNF17 WILD-TYPE    141    132    149
D48V2, multiclass
        clus
vv       RNF17 MUTATED RNF17 WILD-TYPE
  CLUS_1             1             141
  CLUS_2             0             132
  CLUS_3             2             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF17 MUTATED        0      0      3
  RNF17 WILD-TYPE    128    143    150
D48V3, multiclass
        clus
vv       RNF17 MUTATED RNF17 WILD-TYPE
  CLUS_1             0             128
  CLUS_2             0             143
  CLUS_3             3             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF17 MUTATED        1      0      2
  RNF17 WILD-TYPE    152    167    102
D48V4, multiclass
        clus
vv       RNF17 MUTATED RNF17 WILD-TYPE
  CLUS_1             1             152
  CLUS_2             0             167
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF17 MUTATED        2      0      1
  RNF17 WILD-TYPE    142    123    153
D48V5, multiclass
        clus
vv       RNF17 MUTATED RNF17 WILD-TYPE
  CLUS_1             2             142
  CLUS_2             0             123
  CLUS_3             1             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF17 MUTATED        2      0      0      0      1
  RNF17 WILD-TYPE    134     81     52     96     55
D48V6, multiclass
        clus
vv       RNF17 MUTATED RNF17 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             0              81
  CLUS_3             0              52
  CLUS_4             0              96
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF17 MUTATED        2      0      0      0
  RNF17 WILD-TYPE     57     74     45     80
D48V7, multiclass
[1] "Remove cluster labels:" "RNF17 MUTATED"         
clus
  RNF17 MUTATED RNF17 WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5741      TCGA-CH-5746      TCGA-CH-5750 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763      TCGA-CH-5764 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772      TCGA-CH-5789 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494      TCGA-EJ-5497 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512      TCGA-EJ-5514 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-5517      TCGA-EJ-5522      TCGA-EJ-5524      TCGA-EJ-5525 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-5526      TCGA-EJ-5527      TCGA-EJ-5542      TCGA-EJ-7115 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7123      TCGA-EJ-7125      TCGA-EJ-7314      TCGA-EJ-7315 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7317      TCGA-EJ-7321      TCGA-EJ-7327      TCGA-EJ-7328 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7330      TCGA-EJ-7331      TCGA-EJ-7782      TCGA-EJ-7783 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793      TCGA-EJ-7794 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469      TCGA-EJ-8470 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-8472      TCGA-EJ-8474      TCGA-EJ-A46B      TCGA-EJ-A46D 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-A46E      TCGA-EJ-A46G      TCGA-EJ-A46H      TCGA-EJ-A46I 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-A65F      TCGA-EJ-A65J      TCGA-EJ-A6RA      TCGA-EJ-A6RC 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-A7NH      TCGA-EJ-A7NJ      TCGA-EJ-A7NK      TCGA-EJ-A7NM 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-A8FN      TCGA-EJ-A8FO      TCGA-EJ-A8FP      TCGA-EJ-A8FU 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A8O0      TCGA-G9-6329 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6338      TCGA-G9-6339 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-6342      TCGA-G9-6347      TCGA-G9-6351      TCGA-G9-6353 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-6354      TCGA-G9-6361      TCGA-G9-6365      TCGA-G9-6369 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-6377      TCGA-G9-6379      TCGA-G9-6498      TCGA-G9-6499 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-7510      TCGA-G9-7519      TCGA-G9-7521      TCGA-G9-7522 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-7523      TCGA-H9-7775      TCGA-H9-A6BX      TCGA-HC-7075 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7081      TCGA-HC-7209 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213      TCGA-HC-7230 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233      TCGA-HC-7737 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744      TCGA-HC-7745 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749      TCGA-HC-7750 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820      TCGA-HC-7821 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-8258      TCGA-HC-8260      TCGA-HC-8261      TCGA-HC-8262 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266      TCGA-HC-A4ZV 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL      TCGA-HC-A6AN 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY      TCGA-HC-A76W 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168      TCGA-HI-7169 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q      TCGA-J4-A67R 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3      TCGA-J4-A83I 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L      TCGA-J4-A83M 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E      TCGA-J9-A8CK 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL      TCGA-KC-A4BO 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7FA 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KC-A7FE      TCGA-KK-A59V      TCGA-KK-A59Y      TCGA-KK-A59Z 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0      TCGA-KK-A6E1 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5      TCGA-KK-A6E7 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM      TCGA-M7-A720 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM      TCGA-QU-A6IO 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL      TCGA-V1-A8WV 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I      TCGA-VN-A88K 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872      TCGA-VP-A878 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR      TCGA-XJ-A83H 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ      TCGA-XQ-A8TB 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF17 MUTATED        0      0      0      0      2      0
  RNF17 WILD-TYPE     64     29     21     60     23     59
D48V8, multiclass
[1] "Remove cluster labels:" "RNF17 MUTATED"         
clus
  RNF17 MUTATED RNF17 WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5741      TCGA-CH-5746      TCGA-CH-5750 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763      TCGA-CH-5764 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772      TCGA-CH-5789 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494      TCGA-EJ-5497 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512      TCGA-EJ-5514 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-5517      TCGA-EJ-5522      TCGA-EJ-5524      TCGA-EJ-5525 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-5526      TCGA-EJ-5527      TCGA-EJ-5542      TCGA-EJ-7115 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7123      TCGA-EJ-7125      TCGA-EJ-7314      TCGA-EJ-7315 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7317      TCGA-EJ-7321      TCGA-EJ-7327      TCGA-EJ-7328 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7330      TCGA-EJ-7331      TCGA-EJ-7782      TCGA-EJ-7783 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793      TCGA-EJ-7794 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469      TCGA-EJ-8470 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-8472      TCGA-EJ-8474      TCGA-EJ-A46B      TCGA-EJ-A46D 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-A46E      TCGA-EJ-A46G      TCGA-EJ-A46H      TCGA-EJ-A46I 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-A65F      TCGA-EJ-A65J      TCGA-EJ-A6RA      TCGA-EJ-A6RC 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-A7NH      TCGA-EJ-A7NJ      TCGA-EJ-A7NK      TCGA-EJ-A7NM 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-EJ-A8FN      TCGA-EJ-A8FO      TCGA-EJ-A8FP      TCGA-EJ-A8FU 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A8O0      TCGA-G9-6329 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6338      TCGA-G9-6339 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-6342      TCGA-G9-6347      TCGA-G9-6351      TCGA-G9-6353 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-6354      TCGA-G9-6361      TCGA-G9-6365      TCGA-G9-6369 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-6377      TCGA-G9-6379      TCGA-G9-6498      TCGA-G9-6499 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-7510      TCGA-G9-7519      TCGA-G9-7521      TCGA-G9-7522 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-G9-7523      TCGA-H9-7775      TCGA-H9-A6BX      TCGA-HC-7075 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7081      TCGA-HC-7209 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213      TCGA-HC-7230 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233      TCGA-HC-7737 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744      TCGA-HC-7745 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749      TCGA-HC-7750 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820      TCGA-HC-7821 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-8258      TCGA-HC-8260      TCGA-HC-8261      TCGA-HC-8262 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266      TCGA-HC-A4ZV 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL      TCGA-HC-A6AN 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY      TCGA-HC-A76W 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168      TCGA-HI-7169 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q      TCGA-J4-A67R 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3      TCGA-J4-A83I 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L      TCGA-J4-A83M 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E      TCGA-J9-A8CK 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL      TCGA-KC-A4BO 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7FA 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KC-A7FE      TCGA-KK-A59V      TCGA-KK-A59Y      TCGA-KK-A59Z 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0      TCGA-KK-A6E1 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5      TCGA-KK-A6E7 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM      TCGA-M7-A720 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM      TCGA-QU-A6IO 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL      TCGA-V1-A8WV 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I      TCGA-VN-A88K 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872      TCGA-VP-A878 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR      TCGA-XJ-A83H 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ      TCGA-XQ-A8TB 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 

Clustering(49) Variable = KYNU MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KYNU MUTATED        2      0      1
  KYNU WILD-TYPE    244    100     73
D49V1, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            2            244
  CLUS_2            0            100
  CLUS_3            1             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KYNU MUTATED        2      1      0
  KYNU WILD-TYPE    140    131    151
D49V2, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            2            140
  CLUS_2            1            131
  CLUS_3            0            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KYNU MUTATED        2      1      0
  KYNU WILD-TYPE    126    142    153
D49V3, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            2            126
  CLUS_2            1            142
  CLUS_3            0            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KYNU MUTATED        1      2      0
  KYNU WILD-TYPE    152    165    104
D49V4, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            1            152
  CLUS_2            2            165
  CLUS_3            0            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KYNU MUTATED        1      1      1
  KYNU WILD-TYPE    143    122    153
D49V5, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            1            143
  CLUS_2            1            122
  CLUS_3            1            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KYNU MUTATED        1      2      0      0      0
  KYNU WILD-TYPE    135     79     52     96     56
D49V6, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            1            135
  CLUS_2            2             79
  CLUS_3            0             52
  CLUS_4            0             96
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KYNU MUTATED        1      0      1      0
  KYNU WILD-TYPE     58     74     44     80
D49V7, multiclass
[1] "Remove cluster labels:" "KYNU MUTATED"          
clus
  KYNU MUTATED KYNU WILD-TYPE 
             2            256 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5506     TCGA-EJ-5512     TCGA-EJ-5514 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522     TCGA-EJ-5524 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5542 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7782 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G     TCGA-EJ-A46H 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J     TCGA-EJ-A6RA 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO     TCGA-EJ-A8FP 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6347     TCGA-G9-6351 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6354     TCGA-G9-6361     TCGA-G9-6365 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-6369     TCGA-G9-6377     TCGA-G9-6379     TCGA-G9-6498 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775     TCGA-H9-A6BX 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7075     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7081 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7210     TCGA-HC-7212     TCGA-HC-7213 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7745     TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7750     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7820 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A6AL 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-A6AN     TCGA-HC-A6AP     TCGA-HC-A6HX     TCGA-HC-A6HY 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-A76W     TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HI-7168 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M     TCGA-J4-A67Q 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K     TCGA-J4-A83L 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A52C     TCGA-J9-A52E 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-J9-A8CK     TCGA-J9-A8CL     TCGA-J9-A8CM     TCGA-KC-A4BL 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59Y 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6DY     TCGA-KK-A6E0 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E4     TCGA-KK-A6E5 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A6E7     TCGA-KK-A7AQ     TCGA-KK-A7B0     TCGA-KK-A7B1 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A7B2     TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I5 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A8I6     TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8I9 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8IG 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A8IH     TCGA-KK-A8IJ     TCGA-KK-A8IL     TCGA-KK-A8IM 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A723     TCGA-M7-A725     TCGA-QU-A6IM 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-QU-A6IO     TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-V1-A8MG 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88K 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR     TCGA-XJ-A83H 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ     TCGA-XQ-A8TB 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HO 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH     TCGA-YL-A8SJ 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR     TCGA-YL-A9WH 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KYNU MUTATED        0      1      0      0      1      0
  KYNU WILD-TYPE     64     28     21     60     24     59
D49V8, multiclass
[1] "Remove cluster labels:" "KYNU MUTATED"          
clus
  KYNU MUTATED KYNU WILD-TYPE 
             2            256 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-CH-5737 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5506     TCGA-EJ-5512     TCGA-EJ-5514 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522     TCGA-EJ-5524 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5542 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7782 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G     TCGA-EJ-A46H 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J     TCGA-EJ-A6RA 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO     TCGA-EJ-A8FP 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-EJ-A8FU     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6347     TCGA-G9-6351 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6354     TCGA-G9-6361     TCGA-G9-6365 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-6369     TCGA-G9-6377     TCGA-G9-6379     TCGA-G9-6498 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-H9-7775     TCGA-H9-A6BX 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7075     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7081 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7210     TCGA-HC-7212     TCGA-HC-7213 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7745     TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7750     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7820 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-7821     TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-8262     TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A6AL 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-A6AN     TCGA-HC-A6AP     TCGA-HC-A6HX     TCGA-HC-A6HY 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HC-A76W     TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HI-7168 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M     TCGA-J4-A67Q 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K     TCGA-J4-A83L 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J9-A52B     TCGA-J9-A52C     TCGA-J9-A52E 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-J9-A8CK     TCGA-J9-A8CL     TCGA-J9-A8CM     TCGA-KC-A4BL 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KC-A7FA     TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59Y 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6DY     TCGA-KK-A6E0 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E4     TCGA-KK-A6E5 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A6E7     TCGA-KK-A7AQ     TCGA-KK-A7B0     TCGA-KK-A7B1 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A7B2     TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I5 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A8I6     TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8I9 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8IG 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-KK-A8IH     TCGA-KK-A8IJ     TCGA-KK-A8IL     TCGA-KK-A8IM 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A723     TCGA-M7-A725     TCGA-QU-A6IM 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-QU-A6IO     TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-V1-A8MG 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-VN-A88K 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR     TCGA-XJ-A83H 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ     TCGA-XQ-A8TB 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HO 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH     TCGA-YL-A8SJ 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-YL-A8SK     TCGA-YL-A8SO     TCGA-YL-A8SR     TCGA-YL-A9WH 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 
    TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ 
"KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" "KYNU WILD-TYPE" 

Clustering(50) Variable = LARP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LARP1 MUTATED        3      0      1
  LARP1 WILD-TYPE    243    100     73
D50V1, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             3             243
  CLUS_2             0             100
  CLUS_3             1              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LARP1 MUTATED        2      1      1
  LARP1 WILD-TYPE    140    131    150
D50V2, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             2             140
  CLUS_2             1             131
  CLUS_3             1             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LARP1 MUTATED        1      0      3
  LARP1 WILD-TYPE    127    143    150
D50V3, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             1             127
  CLUS_2             0             143
  CLUS_3             3             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LARP1 MUTATED        2      1      1
  LARP1 WILD-TYPE    151    166    103
D50V4, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             2             151
  CLUS_2             1             166
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LARP1 MUTATED        1      1      2
  LARP1 WILD-TYPE    143    122    152
D50V5, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             1             143
  CLUS_2             1             122
  CLUS_3             2             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1 MUTATED        2      1      0      0      1
  LARP1 WILD-TYPE    134     80     52     96     55
D50V6, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             1              80
  CLUS_3             0              52
  CLUS_4             0              96
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP1 MUTATED        1      0      0      1
  LARP1 WILD-TYPE     58     74     45     79
D50V7, multiclass
[1] "Remove cluster labels:" "LARP1 MUTATED"         
clus
  LARP1 MUTATED LARP1 WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5542 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125      TCGA-EJ-7314 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321      TCGA-EJ-7327 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331      TCGA-EJ-7782 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474      TCGA-EJ-A46B 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G      TCGA-EJ-A46H 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J      TCGA-EJ-A6RA 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ      TCGA-EJ-A7NK 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO      TCGA-EJ-A8FP 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A8O0 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6338 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347      TCGA-G9-6351 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361      TCGA-G9-6365 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379      TCGA-G9-6498 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519      TCGA-G9-7521 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775      TCGA-H9-A6BX 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7075      TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7081 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7745      TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7750      TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7821      TCGA-HC-8260      TCGA-HC-8261      TCGA-HC-8262 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266      TCGA-HC-A4ZV 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL      TCGA-HC-A6AN 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY      TCGA-HC-A76W 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168      TCGA-HI-7169 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q      TCGA-J4-A67R 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3      TCGA-J4-A83I 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L      TCGA-J4-A83M 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E      TCGA-J9-A8CK 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL      TCGA-KC-A4BO 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7FA 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KC-A7FE      TCGA-KK-A59V      TCGA-KK-A59Y      TCGA-KK-A59Z 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0      TCGA-KK-A6E1 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5      TCGA-KK-A6E7 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM      TCGA-M7-A720 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM      TCGA-QU-A6IO 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL      TCGA-V1-A8WV 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I      TCGA-VN-A88K 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872      TCGA-VP-A878 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR      TCGA-XJ-A83H 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ      TCGA-XQ-A8TB 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LARP1 MUTATED        0      0      0      0      1      1
  LARP1 WILD-TYPE     64     29     21     60     24     58
D50V8, multiclass
[1] "Remove cluster labels:" "LARP1 MUTATED"         
clus
  LARP1 MUTATED LARP1 WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5542 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125      TCGA-EJ-7314 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321      TCGA-EJ-7327 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331      TCGA-EJ-7782 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474      TCGA-EJ-A46B 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G      TCGA-EJ-A46H 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J      TCGA-EJ-A6RA 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ      TCGA-EJ-A7NK 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO      TCGA-EJ-A8FP 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A8O0 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6338 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347      TCGA-G9-6351 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361      TCGA-G9-6365 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379      TCGA-G9-6498 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519      TCGA-G9-7521 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775      TCGA-H9-A6BX 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7075      TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7081 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7745      TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7750      TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-7821      TCGA-HC-8260      TCGA-HC-8261      TCGA-HC-8262 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266      TCGA-HC-A4ZV 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL      TCGA-HC-A6AN 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY      TCGA-HC-A76W 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168      TCGA-HI-7169 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q      TCGA-J4-A67R 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3      TCGA-J4-A83I 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L      TCGA-J4-A83M 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E      TCGA-J9-A8CK 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL      TCGA-KC-A4BO 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7FA 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KC-A7FE      TCGA-KK-A59V      TCGA-KK-A59Y      TCGA-KK-A59Z 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0      TCGA-KK-A6E1 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5      TCGA-KK-A6E7 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM      TCGA-M7-A720 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM      TCGA-QU-A6IO 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL      TCGA-V1-A8WV 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I      TCGA-VN-A88K 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872      TCGA-VP-A878 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR      TCGA-XJ-A83H 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ      TCGA-XQ-A8TB 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" "LARP1 WILD-TYPE" 

Clustering(51) Variable = CDK12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        0      5      2
  CDK12 WILD-TYPE    246     95     72
D51V1, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             0             246
  CLUS_2             5              95
  CLUS_3             2              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        1      5      2
  CDK12 WILD-TYPE    141    127    149
D51V2, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1             141
  CLUS_2             5             127
  CLUS_3             2             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        2      4      2
  CDK12 WILD-TYPE    126    139    151
D51V3, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             2             126
  CLUS_2             4             139
  CLUS_3             2             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        1      6      1
  CDK12 WILD-TYPE    152    161    103
D51V4, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1             152
  CLUS_2             6             161
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        2      1      5
  CDK12 WILD-TYPE    142    122    149
D51V5, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             2             142
  CLUS_2             1             122
  CLUS_3             5             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDK12 MUTATED        1      1      1      4      1
  CDK12 WILD-TYPE    135     80     51     92     55
D51V6, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             1              80
  CLUS_3             1              51
  CLUS_4             4              92
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        0      3      0      3
  CDK12 WILD-TYPE     59     71     45     77
D51V7, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             3              71
  CLUS_3             0              45
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDK12 MUTATED        1      0      0      2      0      3
  CDK12 WILD-TYPE     63     29     21     58     25     56
D51V8, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              63
  CLUS_2             0              29
  CLUS_3             0              21
  CLUS_4             2              58
  CLUS_5             0              25
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = ACPT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACPT MUTATED        1      1      1
  ACPT WILD-TYPE    245     99     73
D52V1, multiclass
        clus
vv       ACPT MUTATED ACPT WILD-TYPE
  CLUS_1            1            245
  CLUS_2            1             99
  CLUS_3            1             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACPT MUTATED        2      0      1
  ACPT WILD-TYPE    140    132    150
D52V2, multiclass
        clus
vv       ACPT MUTATED ACPT WILD-TYPE
  CLUS_1            2            140
  CLUS_2            0            132
  CLUS_3            1            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACPT MUTATED        2      0      1
  ACPT WILD-TYPE    126    143    152
D52V3, multiclass
        clus
vv       ACPT MUTATED ACPT WILD-TYPE
  CLUS_1            2            126
  CLUS_2            0            143
  CLUS_3            1            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACPT MUTATED        2      0      1
  ACPT WILD-TYPE    151    167    103
D52V4, multiclass
        clus
vv       ACPT MUTATED ACPT WILD-TYPE
  CLUS_1            2            151
  CLUS_2            0            167
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACPT MUTATED        2      1      0
  ACPT WILD-TYPE    142    122    154
D52V5, multiclass
        clus
vv       ACPT MUTATED ACPT WILD-TYPE
  CLUS_1            2            142
  CLUS_2            1            122
  CLUS_3            0            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACPT MUTATED        2      0      0      0      1
  ACPT WILD-TYPE    134     81     52     96     55
D52V6, multiclass
        clus
vv       ACPT MUTATED ACPT WILD-TYPE
  CLUS_1            2            134
  CLUS_2            0             81
  CLUS_3            0             52
  CLUS_4            0             96
  CLUS_5            1             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACPT MUTATED        1      0      0      2
  ACPT WILD-TYPE     58     74     45     78
D52V7, multiclass
        clus
vv       ACPT MUTATED ACPT WILD-TYPE
  CLUS_1            1             58
  CLUS_2            0             74
  CLUS_3            0             45
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACPT MUTATED        2      0      0      0      0      1
  ACPT WILD-TYPE     62     29     21     60     25     58
D52V8, multiclass
        clus
vv       ACPT MUTATED ACPT WILD-TYPE
  CLUS_1            2             62
  CLUS_2            0             29
  CLUS_3            0             21
  CLUS_4            0             60
  CLUS_5            0             25
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = AP4B1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP4B1 MUTATED        2      1      2
  AP4B1 WILD-TYPE    244     99     72
D53V1, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             2             244
  CLUS_2             1              99
  CLUS_3             2              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP4B1 MUTATED        0      3      2
  AP4B1 WILD-TYPE    142    129    149
D53V2, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             0             142
  CLUS_2             3             129
  CLUS_3             2             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP4B1 MUTATED        0      3      2
  AP4B1 WILD-TYPE    128    140    151
D53V3, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             0             128
  CLUS_2             3             140
  CLUS_3             2             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP4B1 MUTATED        1      3      1
  AP4B1 WILD-TYPE    152    164    103
D53V4, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             1             152
  CLUS_2             3             164
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP4B1 MUTATED        2      1      2
  AP4B1 WILD-TYPE    142    122    152
D53V5, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             2             142
  CLUS_2             1             122
  CLUS_3             2             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP4B1 MUTATED        1      2      1      1      0
  AP4B1 WILD-TYPE    135     79     51     95     56
D53V6, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             2              79
  CLUS_3             1              51
  CLUS_4             1              95
  CLUS_5             0              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP4B1 MUTATED        1      0      1      0
  AP4B1 WILD-TYPE     58     74     44     80
D53V7, multiclass
[1] "Remove cluster labels:" "AP4B1 MUTATED"         
clus
  AP4B1 MUTATED AP4B1 WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-5542      TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-7327      TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-7782      TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-7786      TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-7793      TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-8469      TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-A46B      TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-A46H      TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-A7NK      TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-A8FP      TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-7961 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-FC-A8O0      TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G9-6338      TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G9-6351      TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G9-6365      TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G9-6498      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-H9-A6BX      TCGA-HC-7075      TCGA-HC-7078      TCGA-HC-7079 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7081      TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7213      TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7233      TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7744      TCGA-HC-7745      TCGA-HC-7747      TCGA-HC-7748 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7749      TCGA-HC-7750      TCGA-HC-7817      TCGA-HC-7818 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7820      TCGA-HC-7821      TCGA-HC-8258      TCGA-HC-8260 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-8261      TCGA-HC-8262      TCGA-HC-8264      TCGA-HC-8265 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-8266      TCGA-HC-A4ZV      TCGA-HC-A631      TCGA-HC-A632 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-A6AL      TCGA-HC-A6AN      TCGA-HC-A6AP      TCGA-HC-A6HX 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-A6HY      TCGA-HC-A76W      TCGA-HC-A8D0      TCGA-HC-A8D1 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67L      TCGA-J4-A67M 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-J4-A67Q      TCGA-J4-A67R      TCGA-J4-A67T      TCGA-J4-A6G1 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-J4-A6G3      TCGA-J4-A83I      TCGA-J4-A83J      TCGA-J4-A83K 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-J4-A83L      TCGA-J4-A83M      TCGA-J9-A52B      TCGA-J9-A52C 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-J9-A52E      TCGA-J9-A8CK      TCGA-J9-A8CL      TCGA-J9-A8CM 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KC-A4BL      TCGA-KC-A4BO      TCGA-KC-A4BR      TCGA-KC-A4BV 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KC-A7F3      TCGA-KC-A7FA      TCGA-KC-A7FE      TCGA-KK-A59V 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A59Y      TCGA-KK-A59Z      TCGA-KK-A5A1      TCGA-KK-A6DY 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A6E0      TCGA-KK-A6E1      TCGA-KK-A6E2      TCGA-KK-A6E4 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A6E5      TCGA-KK-A6E7      TCGA-KK-A7AQ      TCGA-KK-A7B0 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A7B1      TCGA-KK-A7B2      TCGA-KK-A7B3      TCGA-KK-A7B4 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A8I5      TCGA-KK-A8I6      TCGA-KK-A8I7      TCGA-KK-A8I8 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A8I9      TCGA-KK-A8IA      TCGA-KK-A8IB      TCGA-KK-A8IC 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A8IH      TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-M7-A720      TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-QU-A6IO      TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-V1-A8MJ      TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-V1-A8WV      TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-VN-A88K      TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-VP-A878      TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-VP-A87K      TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-XJ-A83H      TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-XQ-A8TB      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AP4B1 MUTATED        0      1      0      1      0      0
  AP4B1 WILD-TYPE     64     28     21     59     25     59
D53V8, multiclass
[1] "Remove cluster labels:" "AP4B1 MUTATED"         
clus
  AP4B1 MUTATED AP4B1 WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-5542      TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-7327      TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-7782      TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-7786      TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-7793      TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-8469      TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-A46B      TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-A46H      TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-A7NK      TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EJ-A8FP      TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-7961 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-FC-A8O0      TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G9-6338      TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G9-6351      TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G9-6365      TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G9-6498      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-H9-A6BX      TCGA-HC-7075      TCGA-HC-7078      TCGA-HC-7079 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7081      TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7213      TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7233      TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7744      TCGA-HC-7745      TCGA-HC-7747      TCGA-HC-7748 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7749      TCGA-HC-7750      TCGA-HC-7817      TCGA-HC-7818 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-7820      TCGA-HC-7821      TCGA-HC-8258      TCGA-HC-8260 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-8261      TCGA-HC-8262      TCGA-HC-8264      TCGA-HC-8265 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-8266      TCGA-HC-A4ZV      TCGA-HC-A631      TCGA-HC-A632 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-A6AL      TCGA-HC-A6AN      TCGA-HC-A6AP      TCGA-HC-A6HX 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HC-A6HY      TCGA-HC-A76W      TCGA-HC-A8D0      TCGA-HC-A8D1 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67L      TCGA-J4-A67M 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-J4-A67Q      TCGA-J4-A67R      TCGA-J4-A67T      TCGA-J4-A6G1 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-J4-A6G3      TCGA-J4-A83I      TCGA-J4-A83J      TCGA-J4-A83K 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-J4-A83L      TCGA-J4-A83M      TCGA-J9-A52B      TCGA-J9-A52C 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-J9-A52E      TCGA-J9-A8CK      TCGA-J9-A8CL      TCGA-J9-A8CM 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KC-A4BL      TCGA-KC-A4BO      TCGA-KC-A4BR      TCGA-KC-A4BV 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KC-A7F3      TCGA-KC-A7FA      TCGA-KC-A7FE      TCGA-KK-A59V 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A59Y      TCGA-KK-A59Z      TCGA-KK-A5A1      TCGA-KK-A6DY 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A6E0      TCGA-KK-A6E1      TCGA-KK-A6E2      TCGA-KK-A6E4 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A6E5      TCGA-KK-A6E7      TCGA-KK-A7AQ      TCGA-KK-A7B0 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A7B1      TCGA-KK-A7B2      TCGA-KK-A7B3      TCGA-KK-A7B4 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A8I5      TCGA-KK-A8I6      TCGA-KK-A8I7      TCGA-KK-A8I8 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A8I9      TCGA-KK-A8IA      TCGA-KK-A8IB      TCGA-KK-A8IC 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-KK-A8IH      TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-M7-A720      TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-QU-A6IO      TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-V1-A8MJ      TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-V1-A8WV      TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-VN-A88K      TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-VP-A878      TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-VP-A87K      TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-XJ-A83H      TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-XQ-A8TB      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 

Clustering(54) Variable = RAG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        5      3      1
  RAG1 WILD-TYPE    241     97     73
D54V1, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            5            241
  CLUS_2            3             97
  CLUS_3            1             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        4      1      4
  RAG1 WILD-TYPE    138    131    147
D54V2, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            4            138
  CLUS_2            1            131
  CLUS_3            4            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        2      2      5
  RAG1 WILD-TYPE    126    141    148
D54V3, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            2            126
  CLUS_2            2            141
  CLUS_3            5            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        4      3      2
  RAG1 WILD-TYPE    149    164    102
D54V4, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            4            149
  CLUS_2            3            164
  CLUS_3            2            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        2      5      2
  RAG1 WILD-TYPE    142    118    152
D54V5, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            2            142
  CLUS_2            5            118
  CLUS_3            2            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAG1 MUTATED        2      2      2      1      2
  RAG1 WILD-TYPE    134     79     50     95     54
D54V6, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            2            134
  CLUS_2            2             79
  CLUS_3            2             50
  CLUS_4            1             95
  CLUS_5            2             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1 MUTATED        1      1      0      5
  RAG1 WILD-TYPE     58     73     45     75
D54V7, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            1             58
  CLUS_2            1             73
  CLUS_3            0             45
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAG1 MUTATED        2      1      0      0      0      4
  RAG1 WILD-TYPE     62     28     21     60     25     55
D54V8, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            2             62
  CLUS_2            1             28
  CLUS_3            0             21
  CLUS_4            0             60
  CLUS_5            0             25
  CLUS_6            4             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = APC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED        4      5      0
  APC WILD-TYPE    242     95     74
D55V1, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           4           242
  CLUS_2           5            95
  CLUS_3           0            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED        1      5      3
  APC WILD-TYPE    141    127    148
D55V2, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1           141
  CLUS_2           5           127
  CLUS_3           3           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED        1      4      4
  APC WILD-TYPE    127    139    149
D55V3, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1           127
  CLUS_2           4           139
  CLUS_3           4           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED        1      6      2
  APC WILD-TYPE    152    161    102
D55V4, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1           152
  CLUS_2           6           161
  CLUS_3           2           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED        2      0      7
  APC WILD-TYPE    142    123    147
D55V5, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           2           142
  CLUS_2           0           123
  CLUS_3           7           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED        1      1      1      4      2
  APC WILD-TYPE    135     80     51     92     54
D55V6, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1           135
  CLUS_2           1            80
  CLUS_3           1            51
  CLUS_4           4            92
  CLUS_5           2            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED        1      3      0      0
  APC WILD-TYPE     58     71     45     80
D55V7, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1            58
  CLUS_2           3            71
  CLUS_3           0            45
  CLUS_4           0            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APC MUTATED        1      1      0      2      0      0
  APC WILD-TYPE     63     28     21     58     25     59
D55V8, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1            63
  CLUS_2           1            28
  CLUS_3           0            21
  CLUS_4           2            58
  CLUS_5           0            25
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = MSLNL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MSLNL MUTATED        2      1      1
  MSLNL WILD-TYPE    244     99     73
D56V1, multiclass
        clus
vv       MSLNL MUTATED MSLNL WILD-TYPE
  CLUS_1             2             244
  CLUS_2             1              99
  CLUS_3             1              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MSLNL MUTATED        0      3      1
  MSLNL WILD-TYPE    142    129    150
D56V2, multiclass
        clus
vv       MSLNL MUTATED MSLNL WILD-TYPE
  CLUS_1             0             142
  CLUS_2             3             129
  CLUS_3             1             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MSLNL MUTATED        1      2      1
  MSLNL WILD-TYPE    127    141    152
D56V3, multiclass
        clus
vv       MSLNL MUTATED MSLNL WILD-TYPE
  CLUS_1             1             127
  CLUS_2             2             141
  CLUS_3             1             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MSLNL MUTATED        1      2      1
  MSLNL WILD-TYPE    152    165    103
D56V4, multiclass
        clus
vv       MSLNL MUTATED MSLNL WILD-TYPE
  CLUS_1             1             152
  CLUS_2             2             165
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MSLNL MUTATED        1      2      1
  MSLNL WILD-TYPE    143    121    153
D56V5, multiclass
        clus
vv       MSLNL MUTATED MSLNL WILD-TYPE
  CLUS_1             1             143
  CLUS_2             2             121
  CLUS_3             1             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSLNL MUTATED        1      1      0      0      2
  MSLNL WILD-TYPE    135     80     52     96     54
D56V6, multiclass
        clus
vv       MSLNL MUTATED MSLNL WILD-TYPE
  CLUS_1             1             135
  CLUS_2             1              80
  CLUS_3             0              52
  CLUS_4             0              96
  CLUS_5             2              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSLNL MUTATED        0      0      0      2
  MSLNL WILD-TYPE     59     74     45     78
D56V7, multiclass
[1] "Remove cluster labels:" "MSLNL MUTATED"         
clus
  MSLNL MUTATED MSLNL WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-5542      TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-7327      TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-7782      TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-7786      TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-7793      TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-8469      TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-A46B      TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-A46H      TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-A7NK      TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-A8FP      TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-7961 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-FC-A8O0      TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-G9-6338      TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-G9-6351      TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-G9-6365      TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-G9-6498      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-H9-A6BX      TCGA-HC-7075      TCGA-HC-7079      TCGA-HC-7081 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7745      TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7750      TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7821      TCGA-HC-8258      TCGA-HC-8260      TCGA-HC-8262 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266      TCGA-HC-A4ZV 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL      TCGA-HC-A6AN 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY      TCGA-HC-A76W 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168      TCGA-HI-7169 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q      TCGA-J4-A67R 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3      TCGA-J4-A83I 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L      TCGA-J4-A83M 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E      TCGA-J9-A8CK 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL      TCGA-KC-A4BO 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7FA 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KC-A7FE      TCGA-KK-A59V      TCGA-KK-A59Y      TCGA-KK-A59Z 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0      TCGA-KK-A6E1 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5      TCGA-KK-A6E7 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM      TCGA-M7-A720 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM      TCGA-QU-A6IO 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL      TCGA-V1-A8WV 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I      TCGA-VN-A88K 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872      TCGA-VP-A878 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR      TCGA-XJ-A83H 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ      TCGA-XQ-A8TB 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MSLNL MUTATED        0      0      0      1      0      1
  MSLNL WILD-TYPE     64     29     21     59     25     58
D56V8, multiclass
[1] "Remove cluster labels:" "MSLNL MUTATED"         
clus
  MSLNL MUTATED MSLNL WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-5542      TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-7327      TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-7782      TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-7786      TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-7793      TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-8469      TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-A46B      TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-A46H      TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-A7NK      TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-EJ-A8FP      TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-7961 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-FC-A8O0      TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-G9-6338      TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-G9-6351      TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-G9-6365      TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-G9-6498      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-H9-A6BX      TCGA-HC-7075      TCGA-HC-7079      TCGA-HC-7081 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7745      TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7750      TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-7821      TCGA-HC-8258      TCGA-HC-8260      TCGA-HC-8262 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266      TCGA-HC-A4ZV 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL      TCGA-HC-A6AN 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY      TCGA-HC-A76W 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168      TCGA-HI-7169 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q      TCGA-J4-A67R 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3      TCGA-J4-A83I 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L      TCGA-J4-A83M 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E      TCGA-J9-A8CK 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL      TCGA-KC-A4BO 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7FA 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KC-A7FE      TCGA-KK-A59V      TCGA-KK-A59Y      TCGA-KK-A59Z 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0      TCGA-KK-A6E1 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5      TCGA-KK-A6E7 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM      TCGA-M7-A720 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM      TCGA-QU-A6IO 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL      TCGA-V1-A8WV 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I      TCGA-VN-A88K 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872      TCGA-VP-A878 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR      TCGA-XJ-A83H 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ      TCGA-XQ-A8TB 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" "MSLNL WILD-TYPE" 

Clustering(57) Variable = GAB2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB2 MUTATED        3      1      1
  GAB2 WILD-TYPE    243     99     73
D57V1, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            3            243
  CLUS_2            1             99
  CLUS_3            1             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB2 MUTATED        1      2      2
  GAB2 WILD-TYPE    141    130    149
D57V2, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            1            141
  CLUS_2            2            130
  CLUS_3            2            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB2 MUTATED        1      2      2
  GAB2 WILD-TYPE    127    141    151
D57V3, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            1            127
  CLUS_2            2            141
  CLUS_3            2            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB2 MUTATED        2      2      1
  GAB2 WILD-TYPE    151    165    103
D57V4, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            2            151
  CLUS_2            2            165
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB2 MUTATED        1      2      2
  GAB2 WILD-TYPE    143    121    152
D57V5, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            1            143
  CLUS_2            2            121
  CLUS_3            2            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAB2 MUTATED        1      0      1      3      0
  GAB2 WILD-TYPE    135     81     51     93     56
D57V6, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            0             81
  CLUS_3            1             51
  CLUS_4            3             93
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB2 MUTATED        0      2      1      1
  GAB2 WILD-TYPE     59     72     44     79
D57V7, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            0             59
  CLUS_2            2             72
  CLUS_3            1             44
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAB2 MUTATED        0      0      0      2      0      2
  GAB2 WILD-TYPE     64     29     21     58     25     57
D57V8, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            0             64
  CLUS_2            0             29
  CLUS_3            0             21
  CLUS_4            2             58
  CLUS_5            0             25
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DNMT3B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3B MUTATED        2      1      1
  DNMT3B WILD-TYPE    244     99     73
D58V1, multiclass
        clus
vv       DNMT3B MUTATED DNMT3B WILD-TYPE
  CLUS_1              2              244
  CLUS_2              1               99
  CLUS_3              1               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3B MUTATED        0      4      0
  DNMT3B WILD-TYPE    142    128    151
D58V2, multiclass
        clus
vv       DNMT3B MUTATED DNMT3B WILD-TYPE
  CLUS_1              0              142
  CLUS_2              4              128
  CLUS_3              0              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3B MUTATED        0      3      1
  DNMT3B WILD-TYPE    128    140    152
D58V3, multiclass
        clus
vv       DNMT3B MUTATED DNMT3B WILD-TYPE
  CLUS_1              0              128
  CLUS_2              3              140
  CLUS_3              1              152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3B MUTATED        0      4      0
  DNMT3B WILD-TYPE    153    163    104
D58V4, multiclass
        clus
vv       DNMT3B MUTATED DNMT3B WILD-TYPE
  CLUS_1              0              153
  CLUS_2              4              163
  CLUS_3              0              104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3B MUTATED        1      1      2
  DNMT3B WILD-TYPE    143    122    152
D58V5, multiclass
        clus
vv       DNMT3B MUTATED DNMT3B WILD-TYPE
  CLUS_1              1              143
  CLUS_2              1              122
  CLUS_3              2              152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNMT3B MUTATED        1      1      0      2      0
  DNMT3B WILD-TYPE    135     80     52     94     56
D58V6, multiclass
        clus
vv       DNMT3B MUTATED DNMT3B WILD-TYPE
  CLUS_1              1              135
  CLUS_2              1               80
  CLUS_3              0               52
  CLUS_4              2               94
  CLUS_5              0               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3B MUTATED        0      2      1      0
  DNMT3B WILD-TYPE     59     72     44     80
D58V7, multiclass
        clus
vv       DNMT3B MUTATED DNMT3B WILD-TYPE
  CLUS_1              0               59
  CLUS_2              2               72
  CLUS_3              1               44
  CLUS_4              0               80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNMT3B MUTATED        1      0      1      1      0      0
  DNMT3B WILD-TYPE     63     29     20     59     25     59
D58V8, multiclass
        clus
vv       DNMT3B MUTATED DNMT3B WILD-TYPE
  CLUS_1              1               63
  CLUS_2              0               29
  CLUS_3              1               20
  CLUS_4              1               59
  CLUS_5              0               25
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = NCKAP1L MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NCKAP1L MUTATED        3      2      0
  NCKAP1L WILD-TYPE    243     98     74
D59V1, multiclass
        clus
vv       NCKAP1L MUTATED NCKAP1L WILD-TYPE
  CLUS_1               3               243
  CLUS_2               2                98
  CLUS_3               0                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NCKAP1L MUTATED        0      1      4
  NCKAP1L WILD-TYPE    142    131    147
D59V2, multiclass
        clus
vv       NCKAP1L MUTATED NCKAP1L WILD-TYPE
  CLUS_1               0               142
  CLUS_2               1               131
  CLUS_3               4               147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NCKAP1L MUTATED        0      2      3
  NCKAP1L WILD-TYPE    128    141    150
D59V3, multiclass
        clus
vv       NCKAP1L MUTATED NCKAP1L WILD-TYPE
  CLUS_1               0               128
  CLUS_2               2               141
  CLUS_3               3               150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NCKAP1L MUTATED        0      3      2
  NCKAP1L WILD-TYPE    153    164    102
D59V4, multiclass
        clus
vv       NCKAP1L MUTATED NCKAP1L WILD-TYPE
  CLUS_1               0               153
  CLUS_2               3               164
  CLUS_3               2               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NCKAP1L MUTATED        2      1      2
  NCKAP1L WILD-TYPE    142    122    152
D59V5, multiclass
        clus
vv       NCKAP1L MUTATED NCKAP1L WILD-TYPE
  CLUS_1               2               142
  CLUS_2               1               122
  CLUS_3               2               152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCKAP1L MUTATED        2      0      1      2      0
  NCKAP1L WILD-TYPE    134     81     51     94     56
D59V6, multiclass
        clus
vv       NCKAP1L MUTATED NCKAP1L WILD-TYPE
  CLUS_1               2               134
  CLUS_2               0                81
  CLUS_3               1                51
  CLUS_4               2                94
  CLUS_5               0                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCKAP1L MUTATED        1      1      0      0
  NCKAP1L WILD-TYPE     58     73     45     80
D59V7, multiclass
[1] "Remove cluster labels:" "NCKAP1L MUTATED"       
clus
  NCKAP1L MUTATED NCKAP1L WILD-TYPE 
                2               256 
       TCGA-2A-A8VL        TCGA-2A-A8VV        TCGA-2A-A8W3        TCGA-CH-5737 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-CH-5738        TCGA-CH-5739        TCGA-CH-5741        TCGA-CH-5746 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-CH-5750        TCGA-CH-5752        TCGA-CH-5762        TCGA-CH-5763 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-CH-5764        TCGA-CH-5766        TCGA-CH-5769        TCGA-CH-5772 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-CH-5789        TCGA-CH-5792        TCGA-CH-5794        TCGA-EJ-5494 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-5497        TCGA-EJ-5504        TCGA-EJ-5506        TCGA-EJ-5512 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-5514        TCGA-EJ-5516        TCGA-EJ-5517        TCGA-EJ-5522 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-5524        TCGA-EJ-5525        TCGA-EJ-5526        TCGA-EJ-5527 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-5542        TCGA-EJ-7115        TCGA-EJ-7123        TCGA-EJ-7125 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-7314        TCGA-EJ-7315        TCGA-EJ-7317        TCGA-EJ-7321 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-7327        TCGA-EJ-7328        TCGA-EJ-7330        TCGA-EJ-7331 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-7782        TCGA-EJ-7783        TCGA-EJ-7784        TCGA-EJ-7785 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-7786        TCGA-EJ-7788        TCGA-EJ-7791        TCGA-EJ-7792 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-7793        TCGA-EJ-7794        TCGA-EJ-7797        TCGA-EJ-8468 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-8469        TCGA-EJ-8470        TCGA-EJ-8472        TCGA-EJ-8474 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-A46B        TCGA-EJ-A46D        TCGA-EJ-A46E        TCGA-EJ-A46G 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-A46H        TCGA-EJ-A46I        TCGA-EJ-A65F        TCGA-EJ-A65J 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-A6RA        TCGA-EJ-A6RC        TCGA-EJ-A7NH        TCGA-EJ-A7NJ 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-A7NK        TCGA-EJ-A7NM        TCGA-EJ-A8FN        TCGA-EJ-A8FO 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-A8FP        TCGA-EJ-A8FU        TCGA-FC-7708        TCGA-FC-7961 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-FC-A8O0        TCGA-G9-6329        TCGA-G9-6333        TCGA-G9-6336 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-G9-6338        TCGA-G9-6339        TCGA-G9-6342        TCGA-G9-6347 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-G9-6351        TCGA-G9-6353        TCGA-G9-6354        TCGA-G9-6361 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-G9-6365        TCGA-G9-6369        TCGA-G9-6377        TCGA-G9-6379 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-G9-6498        TCGA-G9-6499        TCGA-G9-7510        TCGA-G9-7519 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-G9-7521        TCGA-G9-7522        TCGA-G9-7523        TCGA-H9-7775 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-H9-A6BX        TCGA-HC-7075        TCGA-HC-7078        TCGA-HC-7079 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7081        TCGA-HC-7209        TCGA-HC-7210        TCGA-HC-7212 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7213        TCGA-HC-7230        TCGA-HC-7231        TCGA-HC-7232 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7233        TCGA-HC-7737        TCGA-HC-7740        TCGA-HC-7742 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7744        TCGA-HC-7745        TCGA-HC-7747        TCGA-HC-7748 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7749        TCGA-HC-7750        TCGA-HC-7817        TCGA-HC-7818 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7820        TCGA-HC-7821        TCGA-HC-8258        TCGA-HC-8260 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-8261        TCGA-HC-8262        TCGA-HC-8264        TCGA-HC-8265 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-8266        TCGA-HC-A4ZV        TCGA-HC-A631        TCGA-HC-A632 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-A6AL        TCGA-HC-A6AN        TCGA-HC-A6AP        TCGA-HC-A6HX 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-A6HY        TCGA-HC-A76W        TCGA-HC-A8D0        TCGA-HC-A8D1 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HI-7168        TCGA-HI-7169        TCGA-HI-7170        TCGA-HI-7171 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-J4-8198        TCGA-J4-8200        TCGA-J4-A67L        TCGA-J4-A67M 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-J4-A67Q        TCGA-J4-A67R        TCGA-J4-A67T        TCGA-J4-A6G1 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-J4-A6G3        TCGA-J4-A83I        TCGA-J4-A83J        TCGA-J4-A83K 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-J4-A83L        TCGA-J4-A83M        TCGA-J9-A52B        TCGA-J9-A52C 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-J9-A52E        TCGA-J9-A8CK        TCGA-J9-A8CL        TCGA-J9-A8CM 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KC-A4BL        TCGA-KC-A4BO        TCGA-KC-A4BR        TCGA-KC-A4BV 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KC-A7F3        TCGA-KC-A7FA        TCGA-KC-A7FE        TCGA-KK-A59V 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A59Y        TCGA-KK-A59Z        TCGA-KK-A5A1        TCGA-KK-A6E0 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A6E1        TCGA-KK-A6E2        TCGA-KK-A6E4        TCGA-KK-A6E5 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A6E7        TCGA-KK-A7AQ        TCGA-KK-A7B0        TCGA-KK-A7B1 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A7B2        TCGA-KK-A7B3        TCGA-KK-A7B4        TCGA-KK-A8I5 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A8I6        TCGA-KK-A8I7        TCGA-KK-A8I8        TCGA-KK-A8I9 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A8IA        TCGA-KK-A8IB        TCGA-KK-A8IC        TCGA-KK-A8IG 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A8IH        TCGA-KK-A8IJ        TCGA-KK-A8IL        TCGA-KK-A8IM 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-M7-A720        TCGA-M7-A723        TCGA-M7-A725        TCGA-QU-A6IM 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-QU-A6IO        TCGA-QU-A6IP        TCGA-TK-A8OK        TCGA-V1-A8MG 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-V1-A8MJ        TCGA-V1-A8MK        TCGA-V1-A8MM        TCGA-V1-A8WL 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-V1-A8WV        TCGA-V1-A8WW        TCGA-V1-A8X3        TCGA-VN-A88I 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-VN-A88K        TCGA-VN-A88P        TCGA-VP-A872        TCGA-VP-A878 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-VP-A879        TCGA-VP-A87C        TCGA-VP-A87E        TCGA-VP-A87K 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-X4-A8KQ        TCGA-X4-A8KS        TCGA-XA-A8JR        TCGA-XJ-A83H 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-XJ-A9DI        TCGA-XJ-A9DK        TCGA-XJ-A9DQ        TCGA-XQ-A8TB 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-Y6-A8TL        TCGA-YL-A8HJ        TCGA-YL-A8HK        TCGA-YL-A8HO 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-YL-A8S8        TCGA-YL-A8SF        TCGA-YL-A8SH        TCGA-YL-A8SJ 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-YL-A8SK        TCGA-YL-A8SO        TCGA-YL-A8SR        TCGA-YL-A9WH 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-ZG-A8QW        TCGA-ZG-A8QX        TCGA-ZG-A8QY        TCGA-ZG-A8QZ 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NCKAP1L MUTATED        1      0      0      1      0      0
  NCKAP1L WILD-TYPE     63     29     21     59     25     59
D59V8, multiclass
[1] "Remove cluster labels:" "NCKAP1L MUTATED"       
clus
  NCKAP1L MUTATED NCKAP1L WILD-TYPE 
                2               256 
       TCGA-2A-A8VL        TCGA-2A-A8VV        TCGA-2A-A8W3        TCGA-CH-5737 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-CH-5738        TCGA-CH-5739        TCGA-CH-5741        TCGA-CH-5746 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-CH-5750        TCGA-CH-5752        TCGA-CH-5762        TCGA-CH-5763 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-CH-5764        TCGA-CH-5766        TCGA-CH-5769        TCGA-CH-5772 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-CH-5789        TCGA-CH-5792        TCGA-CH-5794        TCGA-EJ-5494 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-5497        TCGA-EJ-5504        TCGA-EJ-5506        TCGA-EJ-5512 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-5514        TCGA-EJ-5516        TCGA-EJ-5517        TCGA-EJ-5522 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-5524        TCGA-EJ-5525        TCGA-EJ-5526        TCGA-EJ-5527 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-5542        TCGA-EJ-7115        TCGA-EJ-7123        TCGA-EJ-7125 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-7314        TCGA-EJ-7315        TCGA-EJ-7317        TCGA-EJ-7321 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-7327        TCGA-EJ-7328        TCGA-EJ-7330        TCGA-EJ-7331 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-7782        TCGA-EJ-7783        TCGA-EJ-7784        TCGA-EJ-7785 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-7786        TCGA-EJ-7788        TCGA-EJ-7791        TCGA-EJ-7792 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-7793        TCGA-EJ-7794        TCGA-EJ-7797        TCGA-EJ-8468 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-8469        TCGA-EJ-8470        TCGA-EJ-8472        TCGA-EJ-8474 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-A46B        TCGA-EJ-A46D        TCGA-EJ-A46E        TCGA-EJ-A46G 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-A46H        TCGA-EJ-A46I        TCGA-EJ-A65F        TCGA-EJ-A65J 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-A6RA        TCGA-EJ-A6RC        TCGA-EJ-A7NH        TCGA-EJ-A7NJ 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-A7NK        TCGA-EJ-A7NM        TCGA-EJ-A8FN        TCGA-EJ-A8FO 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-EJ-A8FP        TCGA-EJ-A8FU        TCGA-FC-7708        TCGA-FC-7961 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-FC-A8O0        TCGA-G9-6329        TCGA-G9-6333        TCGA-G9-6336 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-G9-6338        TCGA-G9-6339        TCGA-G9-6342        TCGA-G9-6347 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-G9-6351        TCGA-G9-6353        TCGA-G9-6354        TCGA-G9-6361 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-G9-6365        TCGA-G9-6369        TCGA-G9-6377        TCGA-G9-6379 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-G9-6498        TCGA-G9-6499        TCGA-G9-7510        TCGA-G9-7519 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-G9-7521        TCGA-G9-7522        TCGA-G9-7523        TCGA-H9-7775 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-H9-A6BX        TCGA-HC-7075        TCGA-HC-7078        TCGA-HC-7079 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7081        TCGA-HC-7209        TCGA-HC-7210        TCGA-HC-7212 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7213        TCGA-HC-7230        TCGA-HC-7231        TCGA-HC-7232 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7233        TCGA-HC-7737        TCGA-HC-7740        TCGA-HC-7742 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7744        TCGA-HC-7745        TCGA-HC-7747        TCGA-HC-7748 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7749        TCGA-HC-7750        TCGA-HC-7817        TCGA-HC-7818 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-7820        TCGA-HC-7821        TCGA-HC-8258        TCGA-HC-8260 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-8261        TCGA-HC-8262        TCGA-HC-8264        TCGA-HC-8265 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-8266        TCGA-HC-A4ZV        TCGA-HC-A631        TCGA-HC-A632 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-A6AL        TCGA-HC-A6AN        TCGA-HC-A6AP        TCGA-HC-A6HX 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HC-A6HY        TCGA-HC-A76W        TCGA-HC-A8D0        TCGA-HC-A8D1 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-HI-7168        TCGA-HI-7169        TCGA-HI-7170        TCGA-HI-7171 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-J4-8198        TCGA-J4-8200        TCGA-J4-A67L        TCGA-J4-A67M 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-J4-A67Q        TCGA-J4-A67R        TCGA-J4-A67T        TCGA-J4-A6G1 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-J4-A6G3        TCGA-J4-A83I        TCGA-J4-A83J        TCGA-J4-A83K 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-J4-A83L        TCGA-J4-A83M        TCGA-J9-A52B        TCGA-J9-A52C 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-J9-A52E        TCGA-J9-A8CK        TCGA-J9-A8CL        TCGA-J9-A8CM 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KC-A4BL        TCGA-KC-A4BO        TCGA-KC-A4BR        TCGA-KC-A4BV 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KC-A7F3        TCGA-KC-A7FA        TCGA-KC-A7FE        TCGA-KK-A59V 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A59Y        TCGA-KK-A59Z        TCGA-KK-A5A1        TCGA-KK-A6E0 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A6E1        TCGA-KK-A6E2        TCGA-KK-A6E4        TCGA-KK-A6E5 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A6E7        TCGA-KK-A7AQ        TCGA-KK-A7B0        TCGA-KK-A7B1 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A7B2        TCGA-KK-A7B3        TCGA-KK-A7B4        TCGA-KK-A8I5 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A8I6        TCGA-KK-A8I7        TCGA-KK-A8I8        TCGA-KK-A8I9 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A8IA        TCGA-KK-A8IB        TCGA-KK-A8IC        TCGA-KK-A8IG 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-KK-A8IH        TCGA-KK-A8IJ        TCGA-KK-A8IL        TCGA-KK-A8IM 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-M7-A720        TCGA-M7-A723        TCGA-M7-A725        TCGA-QU-A6IM 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-QU-A6IO        TCGA-QU-A6IP        TCGA-TK-A8OK        TCGA-V1-A8MG 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-V1-A8MJ        TCGA-V1-A8MK        TCGA-V1-A8MM        TCGA-V1-A8WL 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-V1-A8WV        TCGA-V1-A8WW        TCGA-V1-A8X3        TCGA-VN-A88I 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-VN-A88K        TCGA-VN-A88P        TCGA-VP-A872        TCGA-VP-A878 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-VP-A879        TCGA-VP-A87C        TCGA-VP-A87E        TCGA-VP-A87K 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-X4-A8KQ        TCGA-X4-A8KS        TCGA-XA-A8JR        TCGA-XJ-A83H 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-XJ-A9DI        TCGA-XJ-A9DK        TCGA-XJ-A9DQ        TCGA-XQ-A8TB 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-Y6-A8TL        TCGA-YL-A8HJ        TCGA-YL-A8HK        TCGA-YL-A8HO 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-YL-A8S8        TCGA-YL-A8SF        TCGA-YL-A8SH        TCGA-YL-A8SJ 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-YL-A8SK        TCGA-YL-A8SO        TCGA-YL-A8SR        TCGA-YL-A9WH 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 
       TCGA-ZG-A8QW        TCGA-ZG-A8QX        TCGA-ZG-A8QY        TCGA-ZG-A8QZ 
"NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" "NCKAP1L WILD-TYPE" 

Clustering(60) Variable = PRTFDC1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRTFDC1 MUTATED        3      0      0
  PRTFDC1 WILD-TYPE    243    100     74
D60V1, multiclass
        clus
vv       PRTFDC1 MUTATED PRTFDC1 WILD-TYPE
  CLUS_1               3               243
  CLUS_2               0               100
  CLUS_3               0                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRTFDC1 MUTATED        1      1      1
  PRTFDC1 WILD-TYPE    141    131    150
D60V2, multiclass
        clus
vv       PRTFDC1 MUTATED PRTFDC1 WILD-TYPE
  CLUS_1               1               141
  CLUS_2               1               131
  CLUS_3               1               150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRTFDC1 MUTATED        1      1      1
  PRTFDC1 WILD-TYPE    127    142    152
D60V3, multiclass
        clus
vv       PRTFDC1 MUTATED PRTFDC1 WILD-TYPE
  CLUS_1               1               127
  CLUS_2               1               142
  CLUS_3               1               152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRTFDC1 MUTATED        3      0      0
  PRTFDC1 WILD-TYPE    150    167    104
D60V4, multiclass
        clus
vv       PRTFDC1 MUTATED PRTFDC1 WILD-TYPE
  CLUS_1               3               150
  CLUS_2               0               167
  CLUS_3               0               104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRTFDC1 MUTATED        0      3      0
  PRTFDC1 WILD-TYPE    144    120    154
D60V5, multiclass
        clus
vv       PRTFDC1 MUTATED PRTFDC1 WILD-TYPE
  CLUS_1               0               144
  CLUS_2               3               120
  CLUS_3               0               154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRTFDC1 MUTATED        1      0      1      0      1
  PRTFDC1 WILD-TYPE    135     81     51     96     55
D60V6, multiclass
        clus
vv       PRTFDC1 MUTATED PRTFDC1 WILD-TYPE
  CLUS_1               1               135
  CLUS_2               0                81
  CLUS_3               1                51
  CLUS_4               0                96
  CLUS_5               1                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRTFDC1 MUTATED        0      0      0      1
  PRTFDC1 WILD-TYPE     59     74     45     79
D60V7, multiclass
[1] "Remove cluster labels:" "PRTFDC1 MUTATED"       
clus
  PRTFDC1 MUTATED PRTFDC1 WILD-TYPE 
                1               257 
       TCGA-2A-A8VL        TCGA-2A-A8VV        TCGA-2A-A8W3        TCGA-CH-5737 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-CH-5738        TCGA-CH-5739        TCGA-CH-5741        TCGA-CH-5746 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-CH-5750        TCGA-CH-5752        TCGA-CH-5762        TCGA-CH-5763 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-CH-5764        TCGA-CH-5766        TCGA-CH-5769        TCGA-CH-5772 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-CH-5789        TCGA-CH-5792        TCGA-CH-5794        TCGA-EJ-5494 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-5497        TCGA-EJ-5504        TCGA-EJ-5506        TCGA-EJ-5512 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-5514        TCGA-EJ-5516        TCGA-EJ-5517        TCGA-EJ-5522 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-5524        TCGA-EJ-5525        TCGA-EJ-5526        TCGA-EJ-5527 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-5542        TCGA-EJ-7115        TCGA-EJ-7123        TCGA-EJ-7125 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-7315        TCGA-EJ-7317        TCGA-EJ-7321        TCGA-EJ-7327 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-7328        TCGA-EJ-7330        TCGA-EJ-7331        TCGA-EJ-7782 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-7783        TCGA-EJ-7784        TCGA-EJ-7785        TCGA-EJ-7786 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-7788        TCGA-EJ-7791        TCGA-EJ-7792        TCGA-EJ-7793 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-7794        TCGA-EJ-7797        TCGA-EJ-8468        TCGA-EJ-8469 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-8470        TCGA-EJ-8472        TCGA-EJ-8474        TCGA-EJ-A46B 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-A46D        TCGA-EJ-A46E        TCGA-EJ-A46G        TCGA-EJ-A46H 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-A46I        TCGA-EJ-A65F        TCGA-EJ-A65J        TCGA-EJ-A6RA 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-A6RC        TCGA-EJ-A7NH        TCGA-EJ-A7NJ        TCGA-EJ-A7NK 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-A7NM        TCGA-EJ-A8FN        TCGA-EJ-A8FO        TCGA-EJ-A8FP 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-A8FU        TCGA-FC-7708        TCGA-FC-7961        TCGA-FC-A8O0 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-6329        TCGA-G9-6333        TCGA-G9-6336        TCGA-G9-6338 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-6339        TCGA-G9-6342        TCGA-G9-6347        TCGA-G9-6351 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-6353        TCGA-G9-6354        TCGA-G9-6361        TCGA-G9-6365 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-6369        TCGA-G9-6377        TCGA-G9-6379        TCGA-G9-6498 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-6499        TCGA-G9-7510        TCGA-G9-7519        TCGA-G9-7521 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-7522        TCGA-G9-7523        TCGA-H9-7775        TCGA-H9-A6BX 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7075        TCGA-HC-7078        TCGA-HC-7079        TCGA-HC-7081 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7209        TCGA-HC-7210        TCGA-HC-7212        TCGA-HC-7213 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7230        TCGA-HC-7231        TCGA-HC-7232        TCGA-HC-7233 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7737        TCGA-HC-7740        TCGA-HC-7742        TCGA-HC-7744 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7745        TCGA-HC-7747        TCGA-HC-7748        TCGA-HC-7749 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7750        TCGA-HC-7817        TCGA-HC-7818        TCGA-HC-7820 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7821        TCGA-HC-8258        TCGA-HC-8260        TCGA-HC-8261 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-8262        TCGA-HC-8264        TCGA-HC-8265        TCGA-HC-8266 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-A4ZV        TCGA-HC-A631        TCGA-HC-A632        TCGA-HC-A6AL 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-A6AN        TCGA-HC-A6AP        TCGA-HC-A6HX        TCGA-HC-A6HY 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-A76W        TCGA-HC-A8D0        TCGA-HC-A8D1        TCGA-HI-7168 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HI-7169        TCGA-HI-7170        TCGA-HI-7171        TCGA-J4-8198 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-J4-8200        TCGA-J4-A67L        TCGA-J4-A67M        TCGA-J4-A67Q 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-J4-A67R        TCGA-J4-A67T        TCGA-J4-A6G1        TCGA-J4-A6G3 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-J4-A83I        TCGA-J4-A83J        TCGA-J4-A83K        TCGA-J4-A83L 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-J4-A83M        TCGA-J9-A52B        TCGA-J9-A52C        TCGA-J9-A52E 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-J9-A8CK        TCGA-J9-A8CL        TCGA-J9-A8CM        TCGA-KC-A4BL 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KC-A4BO        TCGA-KC-A4BR        TCGA-KC-A4BV        TCGA-KC-A7F3 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KC-A7FA        TCGA-KC-A7FE        TCGA-KK-A59V        TCGA-KK-A59Y 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A59Z        TCGA-KK-A5A1        TCGA-KK-A6DY        TCGA-KK-A6E0 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A6E1        TCGA-KK-A6E2        TCGA-KK-A6E4        TCGA-KK-A6E5 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A6E7        TCGA-KK-A7AQ        TCGA-KK-A7B0        TCGA-KK-A7B1 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A7B2        TCGA-KK-A7B3        TCGA-KK-A7B4        TCGA-KK-A8I5 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A8I6        TCGA-KK-A8I7        TCGA-KK-A8I8        TCGA-KK-A8I9 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A8IA        TCGA-KK-A8IB        TCGA-KK-A8IC        TCGA-KK-A8IG 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A8IH        TCGA-KK-A8IJ        TCGA-KK-A8IL        TCGA-KK-A8IM 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-M7-A720        TCGA-M7-A723        TCGA-M7-A725        TCGA-QU-A6IM 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-QU-A6IO        TCGA-QU-A6IP        TCGA-TK-A8OK        TCGA-V1-A8MG 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-V1-A8MJ        TCGA-V1-A8MK        TCGA-V1-A8MM        TCGA-V1-A8WL 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-V1-A8WV        TCGA-V1-A8WW        TCGA-V1-A8X3        TCGA-VN-A88I 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-VN-A88K        TCGA-VN-A88L        TCGA-VN-A88P        TCGA-VP-A872 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-VP-A878        TCGA-VP-A879        TCGA-VP-A87C        TCGA-VP-A87E 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-VP-A87K        TCGA-X4-A8KQ        TCGA-X4-A8KS        TCGA-XA-A8JR 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-XJ-A83H        TCGA-XJ-A9DI        TCGA-XJ-A9DK        TCGA-XJ-A9DQ 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-XQ-A8TB        TCGA-Y6-A8TL        TCGA-YL-A8HJ        TCGA-YL-A8HK 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-YL-A8HO        TCGA-YL-A8S8        TCGA-YL-A8SF        TCGA-YL-A8SH 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-YL-A8SJ        TCGA-YL-A8SK        TCGA-YL-A8SO        TCGA-YL-A8SR 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-YL-A9WH        TCGA-ZG-A8QW        TCGA-ZG-A8QX        TCGA-ZG-A8QY 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-ZG-A8QZ 
"PRTFDC1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRTFDC1 MUTATED        0      0      0      0      0      1
  PRTFDC1 WILD-TYPE     64     29     21     60     25     58
D60V8, multiclass
[1] "Remove cluster labels:" "PRTFDC1 MUTATED"       
clus
  PRTFDC1 MUTATED PRTFDC1 WILD-TYPE 
                1               257 
       TCGA-2A-A8VL        TCGA-2A-A8VV        TCGA-2A-A8W3        TCGA-CH-5737 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-CH-5738        TCGA-CH-5739        TCGA-CH-5741        TCGA-CH-5746 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-CH-5750        TCGA-CH-5752        TCGA-CH-5762        TCGA-CH-5763 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-CH-5764        TCGA-CH-5766        TCGA-CH-5769        TCGA-CH-5772 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-CH-5789        TCGA-CH-5792        TCGA-CH-5794        TCGA-EJ-5494 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-5497        TCGA-EJ-5504        TCGA-EJ-5506        TCGA-EJ-5512 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-5514        TCGA-EJ-5516        TCGA-EJ-5517        TCGA-EJ-5522 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-5524        TCGA-EJ-5525        TCGA-EJ-5526        TCGA-EJ-5527 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-5542        TCGA-EJ-7115        TCGA-EJ-7123        TCGA-EJ-7125 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-7315        TCGA-EJ-7317        TCGA-EJ-7321        TCGA-EJ-7327 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-7328        TCGA-EJ-7330        TCGA-EJ-7331        TCGA-EJ-7782 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-7783        TCGA-EJ-7784        TCGA-EJ-7785        TCGA-EJ-7786 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-7788        TCGA-EJ-7791        TCGA-EJ-7792        TCGA-EJ-7793 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-7794        TCGA-EJ-7797        TCGA-EJ-8468        TCGA-EJ-8469 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-8470        TCGA-EJ-8472        TCGA-EJ-8474        TCGA-EJ-A46B 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-A46D        TCGA-EJ-A46E        TCGA-EJ-A46G        TCGA-EJ-A46H 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-A46I        TCGA-EJ-A65F        TCGA-EJ-A65J        TCGA-EJ-A6RA 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-A6RC        TCGA-EJ-A7NH        TCGA-EJ-A7NJ        TCGA-EJ-A7NK 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-A7NM        TCGA-EJ-A8FN        TCGA-EJ-A8FO        TCGA-EJ-A8FP 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-EJ-A8FU        TCGA-FC-7708        TCGA-FC-7961        TCGA-FC-A8O0 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-6329        TCGA-G9-6333        TCGA-G9-6336        TCGA-G9-6338 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-6339        TCGA-G9-6342        TCGA-G9-6347        TCGA-G9-6351 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-6353        TCGA-G9-6354        TCGA-G9-6361        TCGA-G9-6365 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-6369        TCGA-G9-6377        TCGA-G9-6379        TCGA-G9-6498 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-6499        TCGA-G9-7510        TCGA-G9-7519        TCGA-G9-7521 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-G9-7522        TCGA-G9-7523        TCGA-H9-7775        TCGA-H9-A6BX 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7075        TCGA-HC-7078        TCGA-HC-7079        TCGA-HC-7081 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7209        TCGA-HC-7210        TCGA-HC-7212        TCGA-HC-7213 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7230        TCGA-HC-7231        TCGA-HC-7232        TCGA-HC-7233 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7737        TCGA-HC-7740        TCGA-HC-7742        TCGA-HC-7744 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7745        TCGA-HC-7747        TCGA-HC-7748        TCGA-HC-7749 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7750        TCGA-HC-7817        TCGA-HC-7818        TCGA-HC-7820 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-7821        TCGA-HC-8258        TCGA-HC-8260        TCGA-HC-8261 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-8262        TCGA-HC-8264        TCGA-HC-8265        TCGA-HC-8266 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-A4ZV        TCGA-HC-A631        TCGA-HC-A632        TCGA-HC-A6AL 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-A6AN        TCGA-HC-A6AP        TCGA-HC-A6HX        TCGA-HC-A6HY 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HC-A76W        TCGA-HC-A8D0        TCGA-HC-A8D1        TCGA-HI-7168 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-HI-7169        TCGA-HI-7170        TCGA-HI-7171        TCGA-J4-8198 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-J4-8200        TCGA-J4-A67L        TCGA-J4-A67M        TCGA-J4-A67Q 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-J4-A67R        TCGA-J4-A67T        TCGA-J4-A6G1        TCGA-J4-A6G3 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-J4-A83I        TCGA-J4-A83J        TCGA-J4-A83K        TCGA-J4-A83L 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-J4-A83M        TCGA-J9-A52B        TCGA-J9-A52C        TCGA-J9-A52E 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-J9-A8CK        TCGA-J9-A8CL        TCGA-J9-A8CM        TCGA-KC-A4BL 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KC-A4BO        TCGA-KC-A4BR        TCGA-KC-A4BV        TCGA-KC-A7F3 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KC-A7FA        TCGA-KC-A7FE        TCGA-KK-A59V        TCGA-KK-A59Y 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A59Z        TCGA-KK-A5A1        TCGA-KK-A6DY        TCGA-KK-A6E0 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A6E1        TCGA-KK-A6E2        TCGA-KK-A6E4        TCGA-KK-A6E5 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A6E7        TCGA-KK-A7AQ        TCGA-KK-A7B0        TCGA-KK-A7B1 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A7B2        TCGA-KK-A7B3        TCGA-KK-A7B4        TCGA-KK-A8I5 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A8I6        TCGA-KK-A8I7        TCGA-KK-A8I8        TCGA-KK-A8I9 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A8IA        TCGA-KK-A8IB        TCGA-KK-A8IC        TCGA-KK-A8IG 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-KK-A8IH        TCGA-KK-A8IJ        TCGA-KK-A8IL        TCGA-KK-A8IM 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-M7-A720        TCGA-M7-A723        TCGA-M7-A725        TCGA-QU-A6IM 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-QU-A6IO        TCGA-QU-A6IP        TCGA-TK-A8OK        TCGA-V1-A8MG 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-V1-A8MJ        TCGA-V1-A8MK        TCGA-V1-A8MM        TCGA-V1-A8WL 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-V1-A8WV        TCGA-V1-A8WW        TCGA-V1-A8X3        TCGA-VN-A88I 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-VN-A88K        TCGA-VN-A88L        TCGA-VN-A88P        TCGA-VP-A872 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-VP-A878        TCGA-VP-A879        TCGA-VP-A87C        TCGA-VP-A87E 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-VP-A87K        TCGA-X4-A8KQ        TCGA-X4-A8KS        TCGA-XA-A8JR 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-XJ-A83H        TCGA-XJ-A9DI        TCGA-XJ-A9DK        TCGA-XJ-A9DQ 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-XQ-A8TB        TCGA-Y6-A8TL        TCGA-YL-A8HJ        TCGA-YL-A8HK 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-YL-A8HO        TCGA-YL-A8S8        TCGA-YL-A8SF        TCGA-YL-A8SH 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-YL-A8SJ        TCGA-YL-A8SK        TCGA-YL-A8SO        TCGA-YL-A8SR 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-YL-A9WH        TCGA-ZG-A8QW        TCGA-ZG-A8QX        TCGA-ZG-A8QY 
"PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" "PRTFDC1 WILD-TYPE" 
       TCGA-ZG-A8QZ 
"PRTFDC1 WILD-TYPE" 

Clustering(61) Variable = PCSK5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK5 MUTATED        2      2      2
  PCSK5 WILD-TYPE    244     98     72
D61V1, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             2             244
  CLUS_2             2              98
  CLUS_3             2              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK5 MUTATED        2      4      0
  PCSK5 WILD-TYPE    140    128    151
D61V2, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             2             140
  CLUS_2             4             128
  CLUS_3             0             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK5 MUTATED        1      4      1
  PCSK5 WILD-TYPE    127    139    152
D61V3, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             1             127
  CLUS_2             4             139
  CLUS_3             1             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK5 MUTATED        1      5      0
  PCSK5 WILD-TYPE    152    162    104
D61V4, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             1             152
  CLUS_2             5             162
  CLUS_3             0             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK5 MUTATED        1      2      3
  PCSK5 WILD-TYPE    143    121    151
D61V5, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             1             143
  CLUS_2             2             121
  CLUS_3             3             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCSK5 MUTATED        2      1      0      2      1
  PCSK5 WILD-TYPE    134     80     52     94     55
D61V6, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             1              80
  CLUS_3             0              52
  CLUS_4             2              94
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK5 MUTATED        0      2      0      0
  PCSK5 WILD-TYPE     59     72     45     80
D61V7, multiclass
[1] "Remove cluster labels:" "PCSK5 MUTATED"         
clus
  PCSK5 MUTATED PCSK5 WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-5542      TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-7327      TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-7782      TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-7786      TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-7793      TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-8469      TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-A46B      TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-A46H      TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-A7NK      TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-A8FP      TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-A8O0 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6338 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347      TCGA-G9-6351 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361      TCGA-G9-6365 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379      TCGA-G9-6498 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519      TCGA-G9-7521 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775      TCGA-H9-A6BX 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7075      TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7081 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7745      TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7750      TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7821      TCGA-HC-8258      TCGA-HC-8260      TCGA-HC-8261 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-8262      TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-A4ZV      TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-A6AN      TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-A76W      TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-J4-8200      TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-J4-A67R      TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-J4-A83I      TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-J4-A83M      TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-J9-A8CK      TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KC-A4BO      TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KC-A7FA      TCGA-KC-A7FE      TCGA-KK-A59Y      TCGA-KK-A59Z 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0      TCGA-KK-A6E1 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5      TCGA-KK-A6E7 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM      TCGA-M7-A720 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM      TCGA-QU-A6IO 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL      TCGA-V1-A8WV 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I      TCGA-VN-A88K 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872      TCGA-VP-A878 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR      TCGA-XJ-A83H 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ      TCGA-XQ-A8TB 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCSK5 MUTATED        0      0      0      2      0      0
  PCSK5 WILD-TYPE     64     29     21     58     25     59
D61V8, multiclass
[1] "Remove cluster labels:" "PCSK5 MUTATED"         
clus
  PCSK5 MUTATED PCSK5 WILD-TYPE 
              2             256 
     TCGA-2A-A8VL      TCGA-2A-A8VV      TCGA-2A-A8W3      TCGA-CH-5737 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5741      TCGA-CH-5746 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5752      TCGA-CH-5762      TCGA-CH-5763 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5766      TCGA-CH-5769      TCGA-CH-5772 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-CH-5789      TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-5497      TCGA-EJ-5504      TCGA-EJ-5506      TCGA-EJ-5512 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5522 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-5542      TCGA-EJ-7115      TCGA-EJ-7123      TCGA-EJ-7125 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7321 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-7327      TCGA-EJ-7328      TCGA-EJ-7330      TCGA-EJ-7331 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-7782      TCGA-EJ-7783      TCGA-EJ-7784      TCGA-EJ-7785 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-7786      TCGA-EJ-7788      TCGA-EJ-7791      TCGA-EJ-7792 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-7793      TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-8469      TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-A46B      TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46G 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-A46H      TCGA-EJ-A46I      TCGA-EJ-A65F      TCGA-EJ-A65J 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NH      TCGA-EJ-A7NJ 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-A7NK      TCGA-EJ-A7NM      TCGA-EJ-A8FN      TCGA-EJ-A8FO 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-EJ-A8FP      TCGA-EJ-A8FU      TCGA-FC-7708      TCGA-FC-A8O0 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-6329      TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6338 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6347      TCGA-G9-6351 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-6353      TCGA-G9-6354      TCGA-G9-6361      TCGA-G9-6365 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-6369      TCGA-G9-6377      TCGA-G9-6379      TCGA-G9-6498 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519      TCGA-G9-7521 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-G9-7522      TCGA-G9-7523      TCGA-H9-7775      TCGA-H9-A6BX 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7075      TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7081 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7210      TCGA-HC-7212      TCGA-HC-7213 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7232      TCGA-HC-7233 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7745      TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7750      TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7820 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-7821      TCGA-HC-8258      TCGA-HC-8260      TCGA-HC-8261 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-8262      TCGA-HC-8264      TCGA-HC-8265      TCGA-HC-8266 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-A4ZV      TCGA-HC-A631      TCGA-HC-A632      TCGA-HC-A6AL 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-A6AN      TCGA-HC-A6AP      TCGA-HC-A6HX      TCGA-HC-A6HY 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HC-A76W      TCGA-HC-A8D0      TCGA-HC-A8D1      TCGA-HI-7168 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171      TCGA-J4-8198 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-J4-8200      TCGA-J4-A67L      TCGA-J4-A67M      TCGA-J4-A67Q 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-J4-A67R      TCGA-J4-A67T      TCGA-J4-A6G1      TCGA-J4-A6G3 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-J4-A83I      TCGA-J4-A83J      TCGA-J4-A83K      TCGA-J4-A83L 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-J4-A83M      TCGA-J9-A52B      TCGA-J9-A52C      TCGA-J9-A52E 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-J9-A8CK      TCGA-J9-A8CL      TCGA-J9-A8CM      TCGA-KC-A4BL 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KC-A4BO      TCGA-KC-A4BR      TCGA-KC-A4BV      TCGA-KC-A7F3 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KC-A7FA      TCGA-KC-A7FE      TCGA-KK-A59Y      TCGA-KK-A59Z 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A5A1      TCGA-KK-A6DY      TCGA-KK-A6E0      TCGA-KK-A6E1 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E4      TCGA-KK-A6E5      TCGA-KK-A6E7 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A7AQ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I5      TCGA-KK-A8I6 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8I9      TCGA-KK-A8IA 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8IG      TCGA-KK-A8IH 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-KK-A8IL      TCGA-KK-A8IM      TCGA-M7-A720 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A725      TCGA-QU-A6IM      TCGA-QU-A6IO 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-TK-A8OK      TCGA-V1-A8MG      TCGA-V1-A8MJ 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-V1-A8MK      TCGA-V1-A8MM      TCGA-V1-A8WL      TCGA-V1-A8WV 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-V1-A8WW      TCGA-V1-A8X3      TCGA-VN-A88I      TCGA-VN-A88K 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A872      TCGA-VP-A878 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-VP-A879      TCGA-VP-A87C      TCGA-VP-A87E      TCGA-VP-A87K 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-X4-A8KS      TCGA-XA-A8JR      TCGA-XJ-A83H 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-XJ-A9DI      TCGA-XJ-A9DK      TCGA-XJ-A9DQ      TCGA-XQ-A8TB 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-Y6-A8TL      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HO 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-YL-A8S8      TCGA-YL-A8SF      TCGA-YL-A8SH      TCGA-YL-A8SJ 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-YL-A8SK      TCGA-YL-A8SO      TCGA-YL-A8SR      TCGA-YL-A9WH 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 
     TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY      TCGA-ZG-A8QZ 
"PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" "PCSK5 WILD-TYPE" 

Clustering(62) Variable = ITGA2B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ITGA2B MUTATED        4      0      0
  ITGA2B WILD-TYPE    242    100     74
D62V1, multiclass
        clus
vv       ITGA2B MUTATED ITGA2B WILD-TYPE
  CLUS_1              4              242
  CLUS_2              0              100
  CLUS_3              0               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ITGA2B MUTATED        1      1      2
  ITGA2B WILD-TYPE    141    131    149
D62V2, multiclass
        clus
vv       ITGA2B MUTATED ITGA2B WILD-TYPE
  CLUS_1              1              141
  CLUS_2              1              131
  CLUS_3              2              149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ITGA2B MUTATED        0      1      3
  ITGA2B WILD-TYPE    128    142    150
D62V3, multiclass
        clus
vv       ITGA2B MUTATED ITGA2B WILD-TYPE
  CLUS_1              0              128
  CLUS_2              1              142
  CLUS_3              3              150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ITGA2B MUTATED        0      3      1
  ITGA2B WILD-TYPE    153    164    103
D62V4, multiclass
        clus
vv       ITGA2B MUTATED ITGA2B WILD-TYPE
  CLUS_1              0              153
  CLUS_2              3              164
  CLUS_3              1              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ITGA2B MUTATED        0      1      3
  ITGA2B WILD-TYPE    144    122    151
D62V5, multiclass
        clus
vv       ITGA2B MUTATED ITGA2B WILD-TYPE
  CLUS_1              0              144
  CLUS_2              1              122
  CLUS_3              3              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGA2B MUTATED        0      1      0      2      1
  ITGA2B WILD-TYPE    136     80     52     94     55
D62V6, multiclass
        clus
vv       ITGA2B MUTATED ITGA2B WILD-TYPE
  CLUS_1              0              136
  CLUS_2              1               80
  CLUS_3              0               52
  CLUS_4              2               94
  CLUS_5              1               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA2B MUTATED        0      1      1      1
  ITGA2B WILD-TYPE     59     73     44     79
D62V7, multiclass
        clus
vv       ITGA2B MUTATED ITGA2B WILD-TYPE
  CLUS_1              0               59
  CLUS_2              1               73
  CLUS_3              1               44
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITGA2B MUTATED        0      0      0      2      0      1
  ITGA2B WILD-TYPE     64     29     21     58     25     58
D62V8, multiclass
        clus
vv       ITGA2B MUTATED ITGA2B WILD-TYPE
  CLUS_1              0               64
  CLUS_2              0               29
  CLUS_3              0               21
  CLUS_4              2               58
  CLUS_5              0               25
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
