[1] "ofn"        "-oTTGCT-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/TGCT-TP/15111345/TGCT-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/TGCT-TP/15101915/transformed.cor.cli.txt"

nPatients in clinical file=150, in cluster file=150, common to both=150
[1]  47 150
[1] "AMP PEAK  1(1Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE 
                           69                            81 
  AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE 
                           69                            81 
[1] "AMP PEAK  2(2P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE 
                           62                            88 
  AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE 
                           62                            88 
[1] "AMP PEAK  3(3Q27.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE 
                           49                           101 
  AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE 
                           49                           101 
[1] "AMP PEAK  4(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                         20                         130 
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                         20                         130 
[1] "AMP PEAK  5(7P22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE 
                          126                            24 
  AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE 
                          126                            24 
[1] "AMP PEAK  6(7Q11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE 
                           120                             30 
  AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE 
                           120                             30 
[1] "AMP PEAK  7(8Q11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE 
                           122                             28 
  AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE 
                           122                             28 
[1] "AMP PEAK  8(8Q23.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE 
                          108                            42 
  AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE 
                          108                            42 
[1] "AMP PEAK  9(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE 
                            145                               5 
  AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE 
                            145                               5 
[1] "AMP PEAK 10(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE 
                           147                              3 
  AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE 
                           147                              3 
[1] "AMP PEAK 11(12P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE 
                            144                               6 
  AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE 
                            144                               6 
[1] "AMP PEAK 12(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE 
                         100                           50 
  AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE 
                         100                           50 
[1] "AMP PEAK 13(16Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE 
                          21                          129 
  AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE 
                          21                          129 
[1] "AMP PEAK 14(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE 
                             51                              99 
  AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE 
                             51                              99 
[1] "AMP PEAK 15(22Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE 
                             57                              93 
  AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE 
                             57                              93 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            34                            116 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            34                            116 
[1] "DEL PEAK  2(1P31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           27                           123 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           27                           123 
[1] "DEL PEAK  3(1Q42.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE 
                             9                            141 
  DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE 
                             9                            141 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           15                           135 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           15                           135 
[1] "DEL PEAK  5(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE 
                           41                           109 
  DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE 
                           41                           109 
[1] "DEL PEAK  6(4Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE 
                          110                            40 
  DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE 
                          110                            40 
[1] "DEL PEAK  7(5P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE 
                          101                            49 
  DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE 
                          101                            49 
[1] "DEL PEAK  8(5P14.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE 
                          103                            47 
  DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE 
                          103                            47 
[1] "DEL PEAK  9(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                          105                            45 
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                          105                            45 
[1] "DEL PEAK 10(6P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE 
                           24                           126 
  DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE 
                           24                           126 
[1] "DEL PEAK 11(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         26                         124 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         26                         124 
[1] "DEL PEAK 12(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE 
                             4                            146 
  DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE 
                             4                            146 
[1] "DEL PEAK 13(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                           15                           135 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                           15                           135 
[1] "DEL PEAK 14(9P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                           70                            80 
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                           70                            80 
[1] "DEL PEAK 15(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                         66                          84 
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                         66                          84 
[1] "DEL PEAK 16(9Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE 
                           60                            90 
  DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE 
                           60                            90 
[1] "DEL PEAK 17(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE 
                           60                            90 
  DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE 
                           60                            90 
[1] "DEL PEAK 18(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                            84                             66 
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                            84                             66 
[1] "DEL PEAK 19(10Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE 
                            71                             79 
  DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE 
                            71                             79 
[1] "DEL PEAK 20(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                            76                             74 
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                            76                             74 
[1] "DEL PEAK 21(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                            94                             56 
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                            94                             56 
[1] "DEL PEAK 22(11P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE 
                          99                           51 
  DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE 
                          99                           51 
[1] "DEL PEAK 23(11Q12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE 
                           114                             36 
  DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE 
                           114                             36 
[1] "DEL PEAK 24(11Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE 
                           122                             28 
  DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE 
                           122                             28 
[1] "DEL PEAK 25(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE 
                         113                           37 
  DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE 
                         113                           37 
[1] "DEL PEAK 26(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            66                             84 
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            66                             84 
[1] "DEL PEAK 27(18P11.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE 
                            118                              32 
  DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE 
                            118                              32 
[1] "DEL PEAK 28(18Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE 
                           125                             25 
  DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE 
                           125                             25 
[1] "DEL PEAK 29(19Q13.41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE 
                             58                              92 
  DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE 
                             58                              92 
[1] "DEL PEAK 30(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE 
                            29                            121 
  DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE 
                            29                            121 
[1] "DEL PEAK 31(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE 
                           28                           122 
  DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE 
                           28                           122 
[1] "DEL PEAK 32(XQ27.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE 
                           30                           120 
  DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE 
                           30                           120 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 150 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 150 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       16     21     32
  AMP PEAK  1(1Q21.2) WILD-TYPE     32     23     26
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          16                            32
  CLUS_2                          21                            23
  CLUS_3                          32                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       24     22     23
  AMP PEAK  1(1Q21.2) WILD-TYPE     32     27     22
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          24                            32
  CLUS_2                          22                            27
  CLUS_3                          23                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED       23      5     15     13
  AMP PEAK  1(1Q21.2) WILD-TYPE     25      9     20      8
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          23                            25
  CLUS_2                           5                             9
  CLUS_3                          15                            20
  CLUS_4                          13                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       23     12     21
  AMP PEAK  1(1Q21.2) WILD-TYPE     27     13     22
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          23                            27
  CLUS_2                          12                            13
  CLUS_3                          21                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       31     18     20
  AMP PEAK  1(1Q21.2) WILD-TYPE     39     22     20
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          31                            39
  CLUS_2                          18                            22
  CLUS_3                          20                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.2) MUTATED       12     19      3     16      3     13
  AMP PEAK  1(1Q21.2) WILD-TYPE     31      8      9      8      5     10
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q21.2) MUTATED        3
  AMP PEAK  1(1Q21.2) WILD-TYPE     10
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          12                            31
  CLUS_2                          19                             8
  CLUS_3                           3                             9
  CLUS_4                          16                             8
  CLUS_5                           3                             5
  CLUS_6                          13                            10
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       18     32     19
  AMP PEAK  1(1Q21.2) WILD-TYPE     34     25     22
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          18                            34
  CLUS_2                          32                            25
  CLUS_3                          19                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       31     18     20
  AMP PEAK  1(1Q21.2) WILD-TYPE     39     20     22
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          31                            39
  CLUS_2                          18                            20
  CLUS_3                          20                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       30     19     20
  AMP PEAK  1(1Q21.2) WILD-TYPE     39     17     25
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          30                            39
  CLUS_2                          19                            17
  CLUS_3                          20                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED       11     20     19     19
  AMP PEAK  1(1Q21.2) WILD-TYPE     26     13     19     23
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          11                            26
  CLUS_2                          20                            13
  CLUS_3                          19                            19
  CLUS_4                          19                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       12     17     33
  AMP PEAK  2(2P24.1) WILD-TYPE     36     27     25
D2V1, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          12                            36
  CLUS_2                          17                            27
  CLUS_3                          33                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       14     20     28
  AMP PEAK  2(2P24.1) WILD-TYPE     42     29     17
D2V2, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          14                            42
  CLUS_2                          20                            29
  CLUS_3                          28                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P24.1) MUTATED       15      4     16     11
  AMP PEAK  2(2P24.1) WILD-TYPE     33     10     19     10
D2V3, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          15                            33
  CLUS_2                           4                            10
  CLUS_3                          16                            19
  CLUS_4                          11                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       15     10     21
  AMP PEAK  2(2P24.1) WILD-TYPE     35     15     22
D2V4, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          15                            35
  CLUS_2                          10                            15
  CLUS_3                          21                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       23     15     24
  AMP PEAK  2(2P24.1) WILD-TYPE     47     25     16
D2V5, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          23                            47
  CLUS_2                          15                            25
  CLUS_3                          24                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2P24.1) MUTATED       10     13      6     14      2      9
  AMP PEAK  2(2P24.1) WILD-TYPE     33     14      6     10      6     14
                               vv
clus                            CLUS_7
  AMP PEAK  2(2P24.1) MUTATED        8
  AMP PEAK  2(2P24.1) WILD-TYPE      5
D2V6, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                          13                            14
  CLUS_3                           6                             6
  CLUS_4                          14                            10
  CLUS_5                           2                             6
  CLUS_6                           9                            14
  CLUS_7                           8                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       15     24     23
  AMP PEAK  2(2P24.1) WILD-TYPE     37     33     18
D2V7, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          15                            37
  CLUS_2                          24                            33
  CLUS_3                          23                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       23     15     24
  AMP PEAK  2(2P24.1) WILD-TYPE     47     23     18
D2V8, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          23                            47
  CLUS_2                          15                            23
  CLUS_3                          24                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       22     15     25
  AMP PEAK  2(2P24.1) WILD-TYPE     47     21     20
D2V9, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          22                            47
  CLUS_2                          15                            21
  CLUS_3                          25                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P24.1) MUTATED        9     14     15     24
  AMP PEAK  2(2P24.1) WILD-TYPE     28     19     23     18
D2V10, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                           9                            28
  CLUS_2                          14                            19
  CLUS_3                          15                            23
  CLUS_4                          24                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q27.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED       11     13     25
  AMP PEAK  3(3Q27.3) WILD-TYPE     37     31     33
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                          11                            37
  CLUS_2                          13                            31
  CLUS_3                          25                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED       13     21     15
  AMP PEAK  3(3Q27.3) WILD-TYPE     43     28     30
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                          13                            43
  CLUS_2                          21                            28
  CLUS_3                          15                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q27.3) MUTATED        7      5     15     10
  AMP PEAK  3(3Q27.3) WILD-TYPE     41      9     20     11
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           7                            41
  CLUS_2                           5                             9
  CLUS_3                          15                            20
  CLUS_4                          10                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED        7     11     19
  AMP PEAK  3(3Q27.3) WILD-TYPE     43     14     24
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           7                            43
  CLUS_2                          11                            14
  CLUS_3                          19                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED       13     18     18
  AMP PEAK  3(3Q27.3) WILD-TYPE     57     22     22
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                          13                            57
  CLUS_2                          18                            22
  CLUS_3                          18                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q27.3) MUTATED        5      8      6      9      4     10
  AMP PEAK  3(3Q27.3) WILD-TYPE     38     19      6     15      4     13
                               vv
clus                            CLUS_7
  AMP PEAK  3(3Q27.3) MUTATED        7
  AMP PEAK  3(3Q27.3) WILD-TYPE      6
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           5                            38
  CLUS_2                           8                            19
  CLUS_3                           6                             6
  CLUS_4                           9                            15
  CLUS_5                           4                             4
  CLUS_6                          10                            13
  CLUS_7                           7                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED        7     24     18
  AMP PEAK  3(3Q27.3) WILD-TYPE     45     33     23
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                          24                            33
  CLUS_3                          18                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED       13     18     18
  AMP PEAK  3(3Q27.3) WILD-TYPE     57     20     24
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                          13                            57
  CLUS_2                          18                            20
  CLUS_3                          18                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED       12     17     20
  AMP PEAK  3(3Q27.3) WILD-TYPE     57     19     25
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                          12                            57
  CLUS_2                          17                            19
  CLUS_3                          20                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q27.3) MUTATED        5      8     17     19
  AMP PEAK  3(3Q27.3) WILD-TYPE     32     25     21     23
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           5                            32
  CLUS_2                           8                            25
  CLUS_3                          17                            21
  CLUS_4                          19                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED        3     12      5
  AMP PEAK  4(4Q12) WILD-TYPE     45     32     53
D4V1, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         3                          45
  CLUS_2                        12                          32
  CLUS_3                         5                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED        9      5      6
  AMP PEAK  4(4Q12) WILD-TYPE     47     44     39
D4V2, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         9                          47
  CLUS_2                         5                          44
  CLUS_3                         6                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4Q12) MUTATED        8      2      3      2
  AMP PEAK  4(4Q12) WILD-TYPE     40     12     32     19
D4V3, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         8                          40
  CLUS_2                         2                          12
  CLUS_3                         3                          32
  CLUS_4                         2                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED        9      2      4
  AMP PEAK  4(4Q12) WILD-TYPE     41     23     39
D4V4, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         9                          41
  CLUS_2                         2                          23
  CLUS_3                         4                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED       12      5      3
  AMP PEAK  4(4Q12) WILD-TYPE     58     35     37
D4V5, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        12                          58
  CLUS_2                         5                          35
  CLUS_3                         3                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  4(4Q12) MUTATED        5      7      0      2      1      4      1
  AMP PEAK  4(4Q12) WILD-TYPE     38     20     12     22      7     19     12
D4V6, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         5                          38
  CLUS_2                         7                          20
  CLUS_3                         0                          12
  CLUS_4                         2                          22
  CLUS_5                         1                           7
  CLUS_6                         4                          19
  CLUS_7                         1                          12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED        7     10      3
  AMP PEAK  4(4Q12) WILD-TYPE     45     47     38
D4V7, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         7                          45
  CLUS_2                        10                          47
  CLUS_3                         3                          38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED       12      5      3
  AMP PEAK  4(4Q12) WILD-TYPE     58     33     39
D4V8, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        12                          58
  CLUS_2                         5                          33
  CLUS_3                         3                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED       12      5      3
  AMP PEAK  4(4Q12) WILD-TYPE     57     31     42
D4V9, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        12                          57
  CLUS_2                         5                          31
  CLUS_3                         3                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4Q12) MUTATED        5      7      5      3
  AMP PEAK  4(4Q12) WILD-TYPE     32     26     33     39
D4V10, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         5                          32
  CLUS_2                         7                          26
  CLUS_3                         5                          33
  CLUS_4                         3                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P22.1) MUTATED       37     41     48
  AMP PEAK  5(7P22.1) WILD-TYPE     11      3     10
D5V1, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          37                            11
  CLUS_2                          41                             3
  CLUS_3                          48                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P22.1) MUTATED       49     44     33
  AMP PEAK  5(7P22.1) WILD-TYPE      7      5     12
D5V2, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          49                             7
  CLUS_2                          44                             5
  CLUS_3                          33                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P22.1) MUTATED       41     11     26     20
  AMP PEAK  5(7P22.1) WILD-TYPE      7      3      9      1
D5V3, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          41                             7
  CLUS_2                          11                             3
  CLUS_3                          26                             9
  CLUS_4                          20                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P22.1) MUTATED       43     17     38
  AMP PEAK  5(7P22.1) WILD-TYPE      7      8      5
D5V4, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          43                             7
  CLUS_2                          17                             8
  CLUS_3                          38                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P22.1) MUTATED       62     36     28
  AMP PEAK  5(7P22.1) WILD-TYPE      8      4     12
D5V5, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          62                             8
  CLUS_2                          36                             4
  CLUS_3                          28                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(7P22.1) MUTATED       39     23      9     17      7     22
  AMP PEAK  5(7P22.1) WILD-TYPE      4      4      3      7      1      1
                               vv
clus                            CLUS_7
  AMP PEAK  5(7P22.1) MUTATED        9
  AMP PEAK  5(7P22.1) WILD-TYPE      4
D5V6, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          39                             4
  CLUS_2                          23                             4
  CLUS_3                           9                             3
  CLUS_4                          17                             7
  CLUS_5                           7                             1
  CLUS_6                          22                             1
  CLUS_7                           9                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P22.1) MUTATED       46     52     28
  AMP PEAK  5(7P22.1) WILD-TYPE      6      5     13
D5V7, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          46                             6
  CLUS_2                          52                             5
  CLUS_3                          28                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P22.1) MUTATED       62     35     29
  AMP PEAK  5(7P22.1) WILD-TYPE      8      3     13
D5V8, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          62                             8
  CLUS_2                          35                             3
  CLUS_3                          29                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P22.1) MUTATED       61     33     32
  AMP PEAK  5(7P22.1) WILD-TYPE      8      3     13
D5V9, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          61                             8
  CLUS_2                          33                             3
  CLUS_3                          32                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P22.1) MUTATED       34     28     35     29
  AMP PEAK  5(7P22.1) WILD-TYPE      3      5      3     13
D5V10, multiclass
        clus
vv       AMP PEAK  5(7P22.1) MUTATED AMP PEAK  5(7P22.1) WILD-TYPE
  CLUS_1                          34                             3
  CLUS_2                          28                             5
  CLUS_3                          35                             3
  CLUS_4                          29                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q11.22) MUTATED       35     43     42
  AMP PEAK  6(7Q11.22) WILD-TYPE     13      1     16
D6V1, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           35                             13
  CLUS_2                           43                              1
  CLUS_3                           42                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q11.22) MUTATED       48     42     30
  AMP PEAK  6(7Q11.22) WILD-TYPE      8      7     15
D6V2, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           48                              8
  CLUS_2                           42                              7
  CLUS_3                           30                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7Q11.22) MUTATED       42     12     19     19
  AMP PEAK  6(7Q11.22) WILD-TYPE      6      2     16      2
D6V3, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           42                              6
  CLUS_2                           12                              2
  CLUS_3                           19                             16
  CLUS_4                           19                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q11.22) MUTATED       44     18     30
  AMP PEAK  6(7Q11.22) WILD-TYPE      6      7     13
D6V4, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           44                              6
  CLUS_2                           18                              7
  CLUS_3                           30                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q11.22) MUTATED       63     35     22
  AMP PEAK  6(7Q11.22) WILD-TYPE      7      5     18
D6V5, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           63                              7
  CLUS_2                           35                              5
  CLUS_3                           22                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q11.22) MUTATED       39     24      8     14      7     21
  AMP PEAK  6(7Q11.22) WILD-TYPE      4      3      4     10      1      2
                                vv
clus                             CLUS_7
  AMP PEAK  6(7Q11.22) MUTATED        7
  AMP PEAK  6(7Q11.22) WILD-TYPE      6
D6V6, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           39                              4
  CLUS_2                           24                              3
  CLUS_3                            8                              4
  CLUS_4                           14                             10
  CLUS_5                            7                              1
  CLUS_6                           21                              2
  CLUS_7                            7                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q11.22) MUTATED       46     51     23
  AMP PEAK  6(7Q11.22) WILD-TYPE      6      6     18
D6V7, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           46                              6
  CLUS_2                           51                              6
  CLUS_3                           23                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q11.22) MUTATED       63     33     24
  AMP PEAK  6(7Q11.22) WILD-TYPE      7      5     18
D6V8, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           63                              7
  CLUS_2                           33                              5
  CLUS_3                           24                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q11.22) MUTATED       62     32     26
  AMP PEAK  6(7Q11.22) WILD-TYPE      7      4     19
D6V9, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           62                              7
  CLUS_2                           32                              4
  CLUS_3                           26                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7Q11.22) MUTATED       33     30     33     24
  AMP PEAK  6(7Q11.22) WILD-TYPE      4      3      5     18
D6V10, multiclass
        clus
vv       AMP PEAK  6(7Q11.22) MUTATED AMP PEAK  6(7Q11.22) WILD-TYPE
  CLUS_1                           33                              4
  CLUS_2                           30                              3
  CLUS_3                           33                              5
  CLUS_4                           24                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8Q11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q11.23) MUTATED       35     44     43
  AMP PEAK  7(8Q11.23) WILD-TYPE     13      0     15
D7V1, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           35                             13
  CLUS_2                           44                              0
  CLUS_3                           43                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q11.23) MUTATED       52     38     32
  AMP PEAK  7(8Q11.23) WILD-TYPE      4     11     13
D7V2, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           52                              4
  CLUS_2                           38                             11
  CLUS_3                           32                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q11.23) MUTATED       47      8     25     15
  AMP PEAK  7(8Q11.23) WILD-TYPE      1      6     10      6
D7V3, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           47                              1
  CLUS_2                            8                              6
  CLUS_3                           25                             10
  CLUS_4                           15                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q11.23) MUTATED       48     15     32
  AMP PEAK  7(8Q11.23) WILD-TYPE      2     10     11
D7V4, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           48                              2
  CLUS_2                           15                             10
  CLUS_3                           32                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q11.23) MUTATED       67     31     24
  AMP PEAK  7(8Q11.23) WILD-TYPE      3      9     16
D7V5, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           67                              3
  CLUS_2                           31                              9
  CLUS_3                           24                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q11.23) MUTATED       40     27      8     18      6     19
  AMP PEAK  7(8Q11.23) WILD-TYPE      3      0      4      6      2      4
                                vv
clus                             CLUS_7
  AMP PEAK  7(8Q11.23) MUTATED        4
  AMP PEAK  7(8Q11.23) WILD-TYPE      9
D7V6, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           40                              3
  CLUS_2                           27                              0
  CLUS_3                            8                              4
  CLUS_4                           18                              6
  CLUS_5                            6                              2
  CLUS_6                           19                              4
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q11.23) MUTATED       49     49     24
  AMP PEAK  7(8Q11.23) WILD-TYPE      3      8     17
D7V7, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           49                              3
  CLUS_2                           49                              8
  CLUS_3                           24                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q11.23) MUTATED       67     30     25
  AMP PEAK  7(8Q11.23) WILD-TYPE      3      8     17
D7V8, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           67                              3
  CLUS_2                           30                              8
  CLUS_3                           25                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q11.23) MUTATED       66     28     28
  AMP PEAK  7(8Q11.23) WILD-TYPE      3      8     17
D7V9, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           66                              3
  CLUS_2                           28                              8
  CLUS_3                           28                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q11.23) MUTATED       34     33     30     25
  AMP PEAK  7(8Q11.23) WILD-TYPE      3      0      8     17
D7V10, multiclass
        clus
vv       AMP PEAK  7(8Q11.23) MUTATED AMP PEAK  7(8Q11.23) WILD-TYPE
  CLUS_1                           34                              3
  CLUS_2                           33                              0
  CLUS_3                           30                              8
  CLUS_4                           25                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q23.3) MUTATED       34     36     38
  AMP PEAK  8(8Q23.3) WILD-TYPE     14      8     20
D8V1, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          34                            14
  CLUS_2                          36                             8
  CLUS_3                          38                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q23.3) MUTATED       48     35     25
  AMP PEAK  8(8Q23.3) WILD-TYPE      8     14     20
D8V2, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          48                             8
  CLUS_2                          35                            14
  CLUS_3                          25                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q23.3) MUTATED       41      9     20     13
  AMP PEAK  8(8Q23.3) WILD-TYPE      7      5     15      8
D8V3, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          41                             7
  CLUS_2                           9                             5
  CLUS_3                          20                            15
  CLUS_4                          13                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q23.3) MUTATED       42     14     27
  AMP PEAK  8(8Q23.3) WILD-TYPE      8     11     16
D8V4, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          42                             8
  CLUS_2                          14                            11
  CLUS_3                          27                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q23.3) MUTATED       60     28     20
  AMP PEAK  8(8Q23.3) WILD-TYPE     10     12     20
D8V5, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          60                            10
  CLUS_2                          28                            12
  CLUS_3                          20                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q23.3) MUTATED       38     22      9     15      5     16
  AMP PEAK  8(8Q23.3) WILD-TYPE      5      5      3      9      3      7
                               vv
clus                            CLUS_7
  AMP PEAK  8(8Q23.3) MUTATED        3
  AMP PEAK  8(8Q23.3) WILD-TYPE     10
D8V6, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          38                             5
  CLUS_2                          22                             5
  CLUS_3                           9                             3
  CLUS_4                          15                             9
  CLUS_5                           5                             3
  CLUS_6                          16                             7
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q23.3) MUTATED       47     41     20
  AMP PEAK  8(8Q23.3) WILD-TYPE      5     16     21
D8V7, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          47                             5
  CLUS_2                          41                            16
  CLUS_3                          20                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q23.3) MUTATED       60     28     20
  AMP PEAK  8(8Q23.3) WILD-TYPE     10     10     22
D8V8, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          60                            10
  CLUS_2                          28                            10
  CLUS_3                          20                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q23.3) MUTATED       60     23     25
  AMP PEAK  8(8Q23.3) WILD-TYPE      9     13     20
D8V9, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          60                             9
  CLUS_2                          23                            13
  CLUS_3                          25                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q23.3) MUTATED       33     27     26     22
  AMP PEAK  8(8Q23.3) WILD-TYPE      4      6     12     20
D8V10, multiclass
        clus
vv       AMP PEAK  8(8Q23.3) MUTATED AMP PEAK  8(8Q23.3) WILD-TYPE
  CLUS_1                          33                             4
  CLUS_2                          27                             6
  CLUS_3                          26                            12
  CLUS_4                          22                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P13.33) MUTATED       44     43     58
  AMP PEAK  9(12P13.33) WILD-TYPE      4      1      0
D9V1, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            44                               4
  CLUS_2                            43                               1
  CLUS_3                            58                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P13.33) MUTATED       52     49     44
  AMP PEAK  9(12P13.33) WILD-TYPE      4      0      1
D9V2, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            52                               4
  CLUS_2                            49                               0
  CLUS_3                            44                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12P13.33) MUTATED       44     13     35     21
  AMP PEAK  9(12P13.33) WILD-TYPE      4      1      0      0
D9V3, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            44                               4
  CLUS_2                            13                               1
  CLUS_3                            35                               0
  CLUS_4                            21                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P13.33) MUTATED       45     25     43
  AMP PEAK  9(12P13.33) WILD-TYPE      5      0      0
D9V4, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            45                               5
  CLUS_2                            25                               0
  CLUS_3                            43                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P13.33) MUTATED       65     40     40
  AMP PEAK  9(12P13.33) WILD-TYPE      5      0      0
D9V5, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            65                               5
  CLUS_2                            40                               0
  CLUS_3                            40                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(12P13.33) MUTATED       40     25     12     24      8     23
  AMP PEAK  9(12P13.33) WILD-TYPE      3      2      0      0      0      0
                                 vv
clus                              CLUS_7
  AMP PEAK  9(12P13.33) MUTATED       13
  AMP PEAK  9(12P13.33) WILD-TYPE      0
D9V6, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            40                               3
  CLUS_2                            25                               2
  CLUS_3                            12                               0
  CLUS_4                            24                               0
  CLUS_5                             8                               0
  CLUS_6                            23                               0
  CLUS_7                            13                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P13.33) MUTATED       49     55     41
  AMP PEAK  9(12P13.33) WILD-TYPE      3      2      0
D9V7, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            49                               3
  CLUS_2                            55                               2
  CLUS_3                            41                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P13.33) MUTATED       65     38     42
  AMP PEAK  9(12P13.33) WILD-TYPE      5      0      0
D9V8, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            65                               5
  CLUS_2                            38                               0
  CLUS_3                            42                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P13.33) MUTATED       64     36     45
  AMP PEAK  9(12P13.33) WILD-TYPE      5      0      0
D9V9, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            64                               5
  CLUS_2                            36                               0
  CLUS_3                            45                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12P13.33) MUTATED       34     31     38     42
  AMP PEAK  9(12P13.33) WILD-TYPE      3      2      0      0
D9V10, multiclass
        clus
vv       AMP PEAK  9(12P13.33) MUTATED AMP PEAK  9(12P13.33) WILD-TYPE
  CLUS_1                            34                               3
  CLUS_2                            31                               2
  CLUS_3                            38                               0
  CLUS_4                            42                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P12.1) MUTATED       45     44     58
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0
D10V1, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           45                              3
  CLUS_2                           44                              0
  CLUS_3                           58                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P12.1) MUTATED       53     49     45
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0
D10V2, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           53                              3
  CLUS_2                           49                              0
  CLUS_3                           45                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P12.1) MUTATED       46     13     35     21
  AMP PEAK 10(12P12.1) WILD-TYPE      2      1      0      0
D10V3, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           46                              2
  CLUS_2                           13                              1
  CLUS_3                           35                              0
  CLUS_4                           21                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P12.1) MUTATED       47     25     43
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0
D10V4, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           47                              3
  CLUS_2                           25                              0
  CLUS_3                           43                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P12.1) MUTATED       67     40     40
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0
D10V5, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           67                              3
  CLUS_2                           40                              0
  CLUS_3                           40                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P12.1) MUTATED       40     27     12     24      8     23
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0      0      0      0
                                vv
clus                             CLUS_7
  AMP PEAK 10(12P12.1) MUTATED       13
  AMP PEAK 10(12P12.1) WILD-TYPE      0
D10V6, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           40                              3
  CLUS_2                           27                              0
  CLUS_3                           12                              0
  CLUS_4                           24                              0
  CLUS_5                            8                              0
  CLUS_6                           23                              0
  CLUS_7                           13                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P12.1) MUTATED       49     57     41
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0
D10V7, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           49                              3
  CLUS_2                           57                              0
  CLUS_3                           41                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P12.1) MUTATED       67     38     42
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0
D10V8, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           67                              3
  CLUS_2                           38                              0
  CLUS_3                           42                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P12.1) MUTATED       66     36     45
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0
D10V9, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           66                              3
  CLUS_2                           36                              0
  CLUS_3                           45                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P12.1) MUTATED       34     33     38     42
  AMP PEAK 10(12P12.1) WILD-TYPE      3      0      0      0
D10V10, multiclass
        clus
vv       AMP PEAK 10(12P12.1) MUTATED AMP PEAK 10(12P12.1) WILD-TYPE
  CLUS_1                           34                              3
  CLUS_2                           33                              0
  CLUS_3                           38                              0
  CLUS_4                           42                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(12P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P11.21) MUTATED       45     41     58
  AMP PEAK 11(12P11.21) WILD-TYPE      3      3      0
D11V1, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            45                               3
  CLUS_2                            41                               3
  CLUS_3                            58                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P11.21) MUTATED       51     49     44
  AMP PEAK 11(12P11.21) WILD-TYPE      5      0      1
D11V2, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            51                               5
  CLUS_2                            49                               0
  CLUS_3                            44                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P11.21) MUTATED       44     13     35     21
  AMP PEAK 11(12P11.21) WILD-TYPE      4      1      0      0
D11V3, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            44                               4
  CLUS_2                            13                               1
  CLUS_3                            35                               0
  CLUS_4                            21                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P11.21) MUTATED       45     25     43
  AMP PEAK 11(12P11.21) WILD-TYPE      5      0      0
D11V4, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            45                               5
  CLUS_2                            25                               0
  CLUS_3                            43                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P11.21) MUTATED       64     40     40
  AMP PEAK 11(12P11.21) WILD-TYPE      6      0      0
D11V5, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            64                               6
  CLUS_2                            40                               0
  CLUS_3                            40                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P11.21) MUTATED       39     25     12     24      8     23
  AMP PEAK 11(12P11.21) WILD-TYPE      4      2      0      0      0      0
                                 vv
clus                              CLUS_7
  AMP PEAK 11(12P11.21) MUTATED       13
  AMP PEAK 11(12P11.21) WILD-TYPE      0
D11V6, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            39                               4
  CLUS_2                            25                               2
  CLUS_3                            12                               0
  CLUS_4                            24                               0
  CLUS_5                             8                               0
  CLUS_6                            23                               0
  CLUS_7                            13                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P11.21) MUTATED       48     55     41
  AMP PEAK 11(12P11.21) WILD-TYPE      4      2      0
D11V7, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            48                               4
  CLUS_2                            55                               2
  CLUS_3                            41                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P11.21) MUTATED       64     38     42
  AMP PEAK 11(12P11.21) WILD-TYPE      6      0      0
D11V8, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            64                               6
  CLUS_2                            38                               0
  CLUS_3                            42                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P11.21) MUTATED       63     36     45
  AMP PEAK 11(12P11.21) WILD-TYPE      6      0      0
D11V9, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            63                               6
  CLUS_2                            36                               0
  CLUS_3                            45                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P11.21) MUTATED       33     31     38     42
  AMP PEAK 11(12P11.21) WILD-TYPE      4      2      0      0
D11V10, multiclass
        clus
vv       AMP PEAK 11(12P11.21) MUTATED AMP PEAK 11(12P11.21) WILD-TYPE
  CLUS_1                            33                               4
  CLUS_2                            31                               2
  CLUS_3                            38                               0
  CLUS_4                            42                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       29     30     41
  AMP PEAK 12(12Q15) WILD-TYPE     19     14     17
D12V1, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         29                           19
  CLUS_2                         30                           14
  CLUS_3                         41                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       38     33     29
  AMP PEAK 12(12Q15) WILD-TYPE     18     16     16
D12V2, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         38                           18
  CLUS_2                         33                           16
  CLUS_3                         29                           16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12Q15) MUTATED       33      9     20     17
  AMP PEAK 12(12Q15) WILD-TYPE     15      5     15      4
D12V3, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         33                           15
  CLUS_2                          9                            5
  CLUS_3                         20                           15
  CLUS_4                         17                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       33     17     29
  AMP PEAK 12(12Q15) WILD-TYPE     17      8     14
D12V4, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         33                           17
  CLUS_2                         17                            8
  CLUS_3                         29                           14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       48     27     25
  AMP PEAK 12(12Q15) WILD-TYPE     22     13     15
D12V5, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         48                           22
  CLUS_2                         27                           13
  CLUS_3                         25                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 12(12Q15) MUTATED       29     19      6     15      5     18      8
  AMP PEAK 12(12Q15) WILD-TYPE     14      8      6      9      3      5      5
D12V6, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         29                           14
  CLUS_2                         19                            8
  CLUS_3                          6                            6
  CLUS_4                         15                            9
  CLUS_5                          5                            3
  CLUS_6                         18                            5
  CLUS_7                          8                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       34     42     24
  AMP PEAK 12(12Q15) WILD-TYPE     18     15     17
D12V7, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         34                           18
  CLUS_2                         42                           15
  CLUS_3                         24                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       48     27     25
  AMP PEAK 12(12Q15) WILD-TYPE     22     11     17
D12V8, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         48                           22
  CLUS_2                         27                           11
  CLUS_3                         25                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       47     26     27
  AMP PEAK 12(12Q15) WILD-TYPE     22     10     18
D12V9, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         47                           22
  CLUS_2                         26                           10
  CLUS_3                         27                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12Q15) MUTATED       22     26     27     25
  AMP PEAK 12(12Q15) WILD-TYPE     15      7     11     17
D12V10, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         22                           15
  CLUS_2                         26                            7
  CLUS_3                         27                           11
  CLUS_4                         25                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q21) MUTATED        2      2     17
  AMP PEAK 13(16Q21) WILD-TYPE     46     42     41
D13V1, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          2                           46
  CLUS_2                          2                           42
  CLUS_3                         17                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q21) MUTATED        5      9      7
  AMP PEAK 13(16Q21) WILD-TYPE     51     40     38
D13V2, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          5                           51
  CLUS_2                          9                           40
  CLUS_3                          7                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q21) MUTATED        1      1     10      4
  AMP PEAK 13(16Q21) WILD-TYPE     47     13     25     17
D13V3, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          1                           47
  CLUS_2                          1                           13
  CLUS_3                         10                           25
  CLUS_4                          4                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q21) MUTATED        1      7      8
  AMP PEAK 13(16Q21) WILD-TYPE     49     18     35
D13V4, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          1                           49
  CLUS_2                          7                           18
  CLUS_3                          8                           35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q21) MUTATED        4      5     12
  AMP PEAK 13(16Q21) WILD-TYPE     66     35     28
D13V5, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          4                           66
  CLUS_2                          5                           35
  CLUS_3                         12                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 13(16Q21) MUTATED        1      3      3      8      0      3      3
  AMP PEAK 13(16Q21) WILD-TYPE     42     24      9     16      8     20     10
D13V6, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          1                           42
  CLUS_2                          3                           24
  CLUS_3                          3                            9
  CLUS_4                          8                           16
  CLUS_5                          0                            8
  CLUS_6                          3                           20
  CLUS_7                          3                           10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q21) MUTATED        1      9     11
  AMP PEAK 13(16Q21) WILD-TYPE     51     48     30
D13V7, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          1                           51
  CLUS_2                          9                           48
  CLUS_3                         11                           30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q21) MUTATED        4      6     11
  AMP PEAK 13(16Q21) WILD-TYPE     66     32     31
D13V8, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          4                           66
  CLUS_2                          6                           32
  CLUS_3                         11                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q21) MUTATED        4      4     13
  AMP PEAK 13(16Q21) WILD-TYPE     65     32     32
D13V9, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          4                           65
  CLUS_2                          4                           32
  CLUS_3                         13                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q21) MUTATED        1      3      5     12
  AMP PEAK 13(16Q21) WILD-TYPE     36     30     33     30
D13V10, multiclass
        clus
vv       AMP PEAK 13(16Q21) MUTATED AMP PEAK 13(16Q21) WILD-TYPE
  CLUS_1                          1                           36
  CLUS_2                          3                           30
  CLUS_3                          5                           33
  CLUS_4                         12                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(20Q11.21) MUTATED       11     11     29
  AMP PEAK 14(20Q11.21) WILD-TYPE     37     33     29
D14V1, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            11                              37
  CLUS_2                            11                              33
  CLUS_3                            29                              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(20Q11.21) MUTATED       10     19     22
  AMP PEAK 14(20Q11.21) WILD-TYPE     46     30     23
D14V2, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            10                              46
  CLUS_2                            19                              30
  CLUS_3                            22                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(20Q11.21) MUTATED       11      5     14     12
  AMP PEAK 14(20Q11.21) WILD-TYPE     37      9     21      9
D14V3, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            11                              37
  CLUS_2                             5                               9
  CLUS_3                            14                              21
  CLUS_4                            12                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(20Q11.21) MUTATED       10     13     19
  AMP PEAK 14(20Q11.21) WILD-TYPE     40     12     24
D14V4, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            10                              40
  CLUS_2                            13                              12
  CLUS_3                            19                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(20Q11.21) MUTATED       16     13     22
  AMP PEAK 14(20Q11.21) WILD-TYPE     54     27     18
D14V5, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            16                              54
  CLUS_2                            13                              27
  CLUS_3                            22                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(20Q11.21) MUTATED       11      5      3     14      2      9
  AMP PEAK 14(20Q11.21) WILD-TYPE     32     22      9     10      6     14
                                 vv
clus                              CLUS_7
  AMP PEAK 14(20Q11.21) MUTATED        7
  AMP PEAK 14(20Q11.21) WILD-TYPE      6
D14V6, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            11                              32
  CLUS_2                             5                              22
  CLUS_3                             3                               9
  CLUS_4                            14                              10
  CLUS_5                             2                               6
  CLUS_6                             9                              14
  CLUS_7                             7                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(20Q11.21) MUTATED       12     18     21
  AMP PEAK 14(20Q11.21) WILD-TYPE     40     39     20
D14V7, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            12                              40
  CLUS_2                            18                              39
  CLUS_3                            21                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(20Q11.21) MUTATED       16     13     22
  AMP PEAK 14(20Q11.21) WILD-TYPE     54     25     20
D14V8, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            16                              54
  CLUS_2                            13                              25
  CLUS_3                            22                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(20Q11.21) MUTATED       16     12     23
  AMP PEAK 14(20Q11.21) WILD-TYPE     53     24     22
D14V9, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                            16                              53
  CLUS_2                            12                              24
  CLUS_3                            23                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(20Q11.21) MUTATED        6     10     13     22
  AMP PEAK 14(20Q11.21) WILD-TYPE     31     23     25     20
D14V10, multiclass
        clus
vv       AMP PEAK 14(20Q11.21) MUTATED AMP PEAK 14(20Q11.21) WILD-TYPE
  CLUS_1                             6                              31
  CLUS_2                            10                              23
  CLUS_3                            13                              25
  CLUS_4                            22                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(22Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(22Q11.21) MUTATED       13     30     14
  AMP PEAK 15(22Q11.21) WILD-TYPE     35     14     44
D15V1, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            13                              35
  CLUS_2                            30                              14
  CLUS_3                            14                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(22Q11.21) MUTATED       30     12     15
  AMP PEAK 15(22Q11.21) WILD-TYPE     26     37     30
D15V2, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            30                              26
  CLUS_2                            12                              37
  CLUS_3                            15                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(22Q11.21) MUTATED       25      5      5      6
  AMP PEAK 15(22Q11.21) WILD-TYPE     23      9     30     15
D15V3, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            25                              23
  CLUS_2                             5                               9
  CLUS_3                             5                              30
  CLUS_4                             6                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(22Q11.21) MUTATED       26      5     10
  AMP PEAK 15(22Q11.21) WILD-TYPE     24     20     33
D15V4, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            26                              24
  CLUS_2                             5                              20
  CLUS_3                            10                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(22Q11.21) MUTATED       39     10      8
  AMP PEAK 15(22Q11.21) WILD-TYPE     31     30     32
D15V5, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            39                              31
  CLUS_2                            10                              30
  CLUS_3                             8                              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(22Q11.21) MUTATED       16     23      4      5      1      5
  AMP PEAK 15(22Q11.21) WILD-TYPE     27      4      8     19      7     18
                                 vv
clus                              CLUS_7
  AMP PEAK 15(22Q11.21) MUTATED        3
  AMP PEAK 15(22Q11.21) WILD-TYPE     10
D15V6, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            16                              27
  CLUS_2                            23                               4
  CLUS_3                             4                               8
  CLUS_4                             5                              19
  CLUS_5                             1                               7
  CLUS_6                             5                              18
  CLUS_7                             3                              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(22Q11.21) MUTATED       24     25      8
  AMP PEAK 15(22Q11.21) WILD-TYPE     28     32     33
D15V7, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            24                              28
  CLUS_2                            25                              32
  CLUS_3                             8                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(22Q11.21) MUTATED       39      9      9
  AMP PEAK 15(22Q11.21) WILD-TYPE     31     29     33
D15V8, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            39                              31
  CLUS_2                             9                              29
  CLUS_3                             9                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(22Q11.21) MUTATED       38     10      9
  AMP PEAK 15(22Q11.21) WILD-TYPE     31     26     36
D15V9, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            38                              31
  CLUS_2                            10                              26
  CLUS_3                             9                              36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(22Q11.21) MUTATED       15     24     10      8
  AMP PEAK 15(22Q11.21) WILD-TYPE     22      9     28     34
D15V10, multiclass
        clus
vv       AMP PEAK 15(22Q11.21) MUTATED AMP PEAK 15(22Q11.21) WILD-TYPE
  CLUS_1                            15                              22
  CLUS_2                            24                               9
  CLUS_3                            10                              28
  CLUS_4                             8                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED        7     12     15
  DEL PEAK  1(1P36.31) WILD-TYPE     41     32     43
D16V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             41
  CLUS_2                           12                             32
  CLUS_3                           15                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       11     11     12
  DEL PEAK  1(1P36.31) WILD-TYPE     45     38     33
D16V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           11                             45
  CLUS_2                           11                             38
  CLUS_3                           12                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       13      1     11      2
  DEL PEAK  1(1P36.31) WILD-TYPE     35     13     24     19
D16V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           13                             35
  CLUS_2                            1                             13
  CLUS_3                           11                             24
  CLUS_4                            2                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       13      9      5
  DEL PEAK  1(1P36.31) WILD-TYPE     37     16     38
D16V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           13                             37
  CLUS_2                            9                             16
  CLUS_3                            5                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       15      3     16
  DEL PEAK  1(1P36.31) WILD-TYPE     55     37     24
D16V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             55
  CLUS_2                            3                             37
  CLUS_3                           16                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        8      7      2      9      0      2
  DEL PEAK  1(1P36.31) WILD-TYPE     35     20     10     15      8     21
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.31) MUTATED        6
  DEL PEAK  1(1P36.31) WILD-TYPE      7
D16V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                            7                             20
  CLUS_3                            2                             10
  CLUS_4                            9                             15
  CLUS_5                            0                              8
  CLUS_6                            2                             21
  CLUS_7                            6                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       12      6     16
  DEL PEAK  1(1P36.31) WILD-TYPE     40     51     25
D16V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           12                             40
  CLUS_2                            6                             51
  CLUS_3                           16                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       15      3     16
  DEL PEAK  1(1P36.31) WILD-TYPE     55     35     26
D16V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             55
  CLUS_2                            3                             35
  CLUS_3                           16                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       15      2     17
  DEL PEAK  1(1P36.31) WILD-TYPE     54     34     28
D16V9, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             54
  CLUS_2                            2                             34
  CLUS_3                           17                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        8      7      3     16
  DEL PEAK  1(1P36.31) WILD-TYPE     29     26     35     26
D16V10, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                            7                             26
  CLUS_3                            3                             35
  CLUS_4                           16                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK  2(1P31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED        5     15      7
  DEL PEAK  2(1P31.1) WILD-TYPE     43     29     51
D17V1, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           5                            43
  CLUS_2                          15                            29
  CLUS_3                           7                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       10      7     10
  DEL PEAK  2(1P31.1) WILD-TYPE     46     42     35
D17V2, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          10                            46
  CLUS_2                           7                            42
  CLUS_3                          10                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED       13      1      5      2
  DEL PEAK  2(1P31.1) WILD-TYPE     35     13     30     19
D17V3, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          13                            35
  CLUS_2                           1                            13
  CLUS_3                           5                            30
  CLUS_4                           2                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       12      5      4
  DEL PEAK  2(1P31.1) WILD-TYPE     38     20     39
D17V4, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          12                            38
  CLUS_2                           5                            20
  CLUS_3                           4                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       16      4      7
  DEL PEAK  2(1P31.1) WILD-TYPE     54     36     33
D17V5, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          16                            54
  CLUS_2                           4                            36
  CLUS_3                           7                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       10      6      1      4      0      3
  DEL PEAK  2(1P31.1) WILD-TYPE     33     21     11     20      8     20
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P31.1) MUTATED        3
  DEL PEAK  2(1P31.1) WILD-TYPE     10
D17V6, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                           6                            21
  CLUS_3                           1                            11
  CLUS_4                           4                            20
  CLUS_5                           0                             8
  CLUS_6                           3                            20
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       15      4      8
  DEL PEAK  2(1P31.1) WILD-TYPE     37     53     33
D17V7, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          15                            37
  CLUS_2                           4                            53
  CLUS_3                           8                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       16      3      8
  DEL PEAK  2(1P31.1) WILD-TYPE     54     35     34
D17V8, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          16                            54
  CLUS_2                           3                            35
  CLUS_3                           8                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       16      2      9
  DEL PEAK  2(1P31.1) WILD-TYPE     53     34     36
D17V9, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          16                            53
  CLUS_2                           2                            34
  CLUS_3                           9                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        9      7      3      8
  DEL PEAK  2(1P31.1) WILD-TYPE     28     26     35     34
D17V10, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           9                            28
  CLUS_2                           7                            26
  CLUS_3                           3                            35
  CLUS_4                           8                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK  3(1Q42.12) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        0      5      4
  DEL PEAK  3(1Q42.12) WILD-TYPE     48     39     54
D18V1, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            0                             48
  CLUS_2                            5                             39
  CLUS_3                            4                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        2      3      4
  DEL PEAK  3(1Q42.12) WILD-TYPE     54     46     41
D18V2, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            2                             54
  CLUS_2                            3                             46
  CLUS_3                            4                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q42.12) MUTATED        5      0      1      2
  DEL PEAK  3(1Q42.12) WILD-TYPE     43     14     34     19
D18V3, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            5                             43
  CLUS_2                            0                             14
  CLUS_3                            1                             34
  CLUS_4                            2                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        5      0      3
  DEL PEAK  3(1Q42.12) WILD-TYPE     45     25     40
D18V4, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                            0                             25
  CLUS_3                            3                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        6      2      1
  DEL PEAK  3(1Q42.12) WILD-TYPE     64     38     39
D18V5, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            6                             64
  CLUS_2                            2                             38
  CLUS_3                            1                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q42.12) MUTATED        2      4      2      0      0      1
  DEL PEAK  3(1Q42.12) WILD-TYPE     41     23     10     24      8     22
                                vv
clus                             CLUS_7
  DEL PEAK  3(1Q42.12) MUTATED        0
  DEL PEAK  3(1Q42.12) WILD-TYPE     13
D18V6, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            2                             41
  CLUS_2                            4                             23
  CLUS_3                            2                             10
  CLUS_4                            0                             24
  CLUS_5                            0                              8
  CLUS_6                            1                             22
  CLUS_7                            0                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        4      5      0
  DEL PEAK  3(1Q42.12) WILD-TYPE     48     52     41
D18V7, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            4                             48
  CLUS_2                            5                             52
  CLUS_3                            0                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        6      3      0
  DEL PEAK  3(1Q42.12) WILD-TYPE     64     35     42
D18V8, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            6                             64
  CLUS_2                            3                             35
  CLUS_3                            0                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        6      1      2
  DEL PEAK  3(1Q42.12) WILD-TYPE     63     35     43
D18V9, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            6                             63
  CLUS_2                            1                             35
  CLUS_3                            2                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q42.12) MUTATED        0      6      2      1
  DEL PEAK  3(1Q42.12) WILD-TYPE     37     27     36     41
D18V10, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            0                             37
  CLUS_2                            6                             27
  CLUS_3                            2                             36
  CLUS_4                            1                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        3      4      8
  DEL PEAK  4(2Q37.3) WILD-TYPE     45     40     50
D19V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            45
  CLUS_2                           4                            40
  CLUS_3                           8                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        2      9      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     54     40     41
D19V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           9                            40
  CLUS_3                           4                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        3      1      2      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     45     13     33     15
D19V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            45
  CLUS_2                           1                            13
  CLUS_3                           2                            33
  CLUS_4                           6                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        3      2      7
  DEL PEAK  4(2Q37.3) WILD-TYPE     47     23     36
D19V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            47
  CLUS_2                           2                            23
  CLUS_3                           7                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        4      8      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     66     32     37
D19V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           8                            32
  CLUS_3                           3                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        2      2      2      2      0      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     41     25     10     22      8     17
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        1
  DEL PEAK  4(2Q37.3) WILD-TYPE     12
D19V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            41
  CLUS_2                           2                            25
  CLUS_3                           2                            10
  CLUS_4                           2                            22
  CLUS_5                           0                             8
  CLUS_6                           6                            17
  CLUS_7                           1                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        3      9      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     49     48     38
D19V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            49
  CLUS_2                           9                            48
  CLUS_3                           3                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        4      7      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     66     31     38
D19V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           7                            31
  CLUS_3                           4                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        4      7      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     65     29     41
D19V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            65
  CLUS_2                           7                            29
  CLUS_3                           4                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        2      2      8      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     35     31     30     39
D19V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                           2                            31
  CLUS_3                           8                            30
  CLUS_4                           3                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK  5(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       12     14     15
  DEL PEAK  5(3P26.2) WILD-TYPE     36     30     43
D20V1, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          12                            36
  CLUS_2                          14                            30
  CLUS_3                          15                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       16     19      6
  DEL PEAK  5(3P26.2) WILD-TYPE     40     30     39
D20V2, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          16                            40
  CLUS_2                          19                            30
  CLUS_3                           6                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P26.2) MUTATED       13      3      3      7
  DEL PEAK  5(3P26.2) WILD-TYPE     35     11     32     14
D20V3, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          13                            35
  CLUS_2                           3                            11
  CLUS_3                           3                            32
  CLUS_4                           7                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       14      4      8
  DEL PEAK  5(3P26.2) WILD-TYPE     36     21     35
D20V4, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          14                            36
  CLUS_2                           4                            21
  CLUS_3                           8                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       22     16      3
  DEL PEAK  5(3P26.2) WILD-TYPE     48     24     37
D20V5, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          16                            24
  CLUS_3                           3                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P26.2) MUTATED       17      5      2      2      2     12
  DEL PEAK  5(3P26.2) WILD-TYPE     26     22     10     22      6     11
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P26.2) MUTATED        1
  DEL PEAK  5(3P26.2) WILD-TYPE     12
D20V6, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          17                            26
  CLUS_2                           5                            22
  CLUS_3                           2                            10
  CLUS_4                           2                            22
  CLUS_5                           2                             6
  CLUS_6                          12                            11
  CLUS_7                           1                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       16     21      4
  DEL PEAK  5(3P26.2) WILD-TYPE     36     36     37
D20V7, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          16                            36
  CLUS_2                          21                            36
  CLUS_3                           4                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       22     15      4
  DEL PEAK  5(3P26.2) WILD-TYPE     48     23     38
D20V8, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          15                            23
  CLUS_3                           4                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       22     15      4
  DEL PEAK  5(3P26.2) WILD-TYPE     47     21     41
D20V9, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          22                            47
  CLUS_2                          15                            21
  CLUS_3                           4                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P26.2) MUTATED       15      7     16      3
  DEL PEAK  5(3P26.2) WILD-TYPE     22     26     22     39
D20V10, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          15                            22
  CLUS_2                           7                            26
  CLUS_3                          16                            22
  CLUS_4                           3                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  6(4Q22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       29     38     43
  DEL PEAK  6(4Q22.2) WILD-TYPE     19      6     15
D21V1, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          29                            19
  CLUS_2                          38                             6
  CLUS_3                          43                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       40     42     28
  DEL PEAK  6(4Q22.2) WILD-TYPE     16      7     17
D21V2, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          40                            16
  CLUS_2                          42                             7
  CLUS_3                          28                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q22.2) MUTATED       35     10     23     17
  DEL PEAK  6(4Q22.2) WILD-TYPE     13      4     12      4
D21V3, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          35                            13
  CLUS_2                          10                             4
  CLUS_3                          23                            12
  CLUS_4                          17                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       37     16     32
  DEL PEAK  6(4Q22.2) WILD-TYPE     13      9     11
D21V4, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          37                            13
  CLUS_2                          16                             9
  CLUS_3                          32                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       52     35     23
  DEL PEAK  6(4Q22.2) WILD-TYPE     18      5     17
D21V5, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          52                            18
  CLUS_2                          35                             5
  CLUS_3                          23                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q22.2) MUTATED       27     25     10     14      7     21
  DEL PEAK  6(4Q22.2) WILD-TYPE     16      2      2     10      1      2
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q22.2) MUTATED        6
  DEL PEAK  6(4Q22.2) WILD-TYPE      7
D21V6, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          27                            16
  CLUS_2                          25                             2
  CLUS_3                          10                             2
  CLUS_4                          14                            10
  CLUS_5                           7                             1
  CLUS_6                          21                             2
  CLUS_7                           6                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       36     50     24
  DEL PEAK  6(4Q22.2) WILD-TYPE     16      7     17
D21V7, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          36                            16
  CLUS_2                          50                             7
  CLUS_3                          24                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       52     34     24
  DEL PEAK  6(4Q22.2) WILD-TYPE     18      4     18
D21V8, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          52                            18
  CLUS_2                          34                             4
  CLUS_3                          24                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       52     31     27
  DEL PEAK  6(4Q22.2) WILD-TYPE     17      5     18
D21V9, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          52                            17
  CLUS_2                          31                             5
  CLUS_3                          27                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q22.2) MUTATED       24     28     33     25
  DEL PEAK  6(4Q22.2) WILD-TYPE     13      5      5     17
D21V10, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          24                            13
  CLUS_2                          28                             5
  CLUS_3                          33                             5
  CLUS_4                          25                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  7(5P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       34     33     34
  DEL PEAK  7(5P15.2) WILD-TYPE     14     11     24
D22V1, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          34                            14
  CLUS_2                          33                            11
  CLUS_3                          34                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       41     31     29
  DEL PEAK  7(5P15.2) WILD-TYPE     15     18     16
D22V2, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          41                            15
  CLUS_2                          31                            18
  CLUS_3                          29                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.2) MUTATED       33      8     23     10
  DEL PEAK  7(5P15.2) WILD-TYPE     15      6     12     11
D22V3, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          33                            15
  CLUS_2                           8                             6
  CLUS_3                          23                            12
  CLUS_4                          10                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       34     14     26
  DEL PEAK  7(5P15.2) WILD-TYPE     16     11     17
D22V4, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          34                            16
  CLUS_2                          14                            11
  CLUS_3                          26                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       52     25     24
  DEL PEAK  7(5P15.2) WILD-TYPE     18     15     16
D22V5, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          52                            18
  CLUS_2                          25                            15
  CLUS_3                          24                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5P15.2) MUTATED       30     22      9     14      4     14
  DEL PEAK  7(5P15.2) WILD-TYPE     13      5      3     10      4      9
                               vv
clus                            CLUS_7
  DEL PEAK  7(5P15.2) MUTATED        8
  DEL PEAK  7(5P15.2) WILD-TYPE      5
D22V6, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          22                             5
  CLUS_3                           9                             3
  CLUS_4                          14                            10
  CLUS_5                           4                             4
  CLUS_6                          14                             9
  CLUS_7                           8                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       38     37     26
  DEL PEAK  7(5P15.2) WILD-TYPE     14     20     15
D22V7, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          38                            14
  CLUS_2                          37                            20
  CLUS_3                          26                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       52     23     26
  DEL PEAK  7(5P15.2) WILD-TYPE     18     15     16
D22V8, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          52                            18
  CLUS_2                          23                            15
  CLUS_3                          26                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       51     22     28
  DEL PEAK  7(5P15.2) WILD-TYPE     18     14     17
D22V9, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          51                            18
  CLUS_2                          22                            14
  CLUS_3                          28                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.2) MUTATED       27     25     22     27
  DEL PEAK  7(5P15.2) WILD-TYPE     10      8     16     15
D22V10, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          27                            10
  CLUS_2                          25                             8
  CLUS_3                          22                            16
  CLUS_4                          27                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  8(5P14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       33     34     36
  DEL PEAK  8(5P14.3) WILD-TYPE     15     10     22
D23V1, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          33                            15
  CLUS_2                          34                            10
  CLUS_3                          36                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       42     30     31
  DEL PEAK  8(5P14.3) WILD-TYPE     14     19     14
D23V2, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          42                            14
  CLUS_2                          30                            19
  CLUS_3                          31                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P14.3) MUTATED       33      8     26      9
  DEL PEAK  8(5P14.3) WILD-TYPE     15      6      9     12
D23V3, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          33                            15
  CLUS_2                           8                             6
  CLUS_3                          26                             9
  CLUS_4                           9                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       34     15     27
  DEL PEAK  8(5P14.3) WILD-TYPE     16     10     16
D23V4, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          34                            16
  CLUS_2                          15                            10
  CLUS_3                          27                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       53     24     26
  DEL PEAK  8(5P14.3) WILD-TYPE     17     16     14
D23V5, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          53                            17
  CLUS_2                          24                            16
  CLUS_3                          26                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P14.3) MUTATED       30     23      9     15      4     13
  DEL PEAK  8(5P14.3) WILD-TYPE     13      4      3      9      4     10
                               vv
clus                            CLUS_7
  DEL PEAK  8(5P14.3) MUTATED        9
  DEL PEAK  8(5P14.3) WILD-TYPE      4
D23V6, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          23                             4
  CLUS_3                           9                             3
  CLUS_4                          15                             9
  CLUS_5                           4                             4
  CLUS_6                          13                            10
  CLUS_7                           9                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       38     37     28
  DEL PEAK  8(5P14.3) WILD-TYPE     14     20     13
D23V7, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          38                            14
  CLUS_2                          37                            20
  CLUS_3                          28                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       53     22     28
  DEL PEAK  8(5P14.3) WILD-TYPE     17     16     14
D23V8, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          53                            17
  CLUS_2                          22                            16
  CLUS_3                          28                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       52     21     30
  DEL PEAK  8(5P14.3) WILD-TYPE     17     15     15
D23V9, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          52                            17
  CLUS_2                          21                            15
  CLUS_3                          30                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P14.3) MUTATED       27     26     21     29
  DEL PEAK  8(5P14.3) WILD-TYPE     10      7     17     13
D23V10, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          27                            10
  CLUS_2                          26                             7
  CLUS_3                          21                            17
  CLUS_4                          29                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  9(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       33     36     36
  DEL PEAK  9(5Q12.1) WILD-TYPE     15      8     22
D24V1, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          33                            15
  CLUS_2                          36                             8
  CLUS_3                          36                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       44     29     32
  DEL PEAK  9(5Q12.1) WILD-TYPE     12     20     13
D24V2, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          44                            12
  CLUS_2                          29                            20
  CLUS_3                          32                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       36      8     26      9
  DEL PEAK  9(5Q12.1) WILD-TYPE     12      6      9     12
D24V3, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          36                            12
  CLUS_2                           8                             6
  CLUS_3                          26                             9
  CLUS_4                           9                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       37     15     27
  DEL PEAK  9(5Q12.1) WILD-TYPE     13     10     16
D24V4, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          37                            13
  CLUS_2                          15                            10
  CLUS_3                          27                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       56     23     26
  DEL PEAK  9(5Q12.1) WILD-TYPE     14     17     14
D24V5, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          56                            14
  CLUS_2                          23                            17
  CLUS_3                          26                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q12.1) MUTATED       30     26      9     15      4     12
  DEL PEAK  9(5Q12.1) WILD-TYPE     13      1      3      9      4     11
                               vv
clus                            CLUS_7
  DEL PEAK  9(5Q12.1) MUTATED        9
  DEL PEAK  9(5Q12.1) WILD-TYPE      4
D24V6, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          26                             1
  CLUS_3                           9                             3
  CLUS_4                          15                             9
  CLUS_5                           4                             4
  CLUS_6                          12                            11
  CLUS_7                           9                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       40     37     28
  DEL PEAK  9(5Q12.1) WILD-TYPE     12     20     13
D24V7, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          40                            12
  CLUS_2                          37                            20
  CLUS_3                          28                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       56     21     28
  DEL PEAK  9(5Q12.1) WILD-TYPE     14     17     14
D24V8, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          56                            14
  CLUS_2                          21                            17
  CLUS_3                          28                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       55     20     30
  DEL PEAK  9(5Q12.1) WILD-TYPE     14     16     15
D24V9, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          55                            14
  CLUS_2                          20                            16
  CLUS_3                          30                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       27     29     20     29
  DEL PEAK  9(5Q12.1) WILD-TYPE     10      4     18     13
D24V10, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          27                            10
  CLUS_2                          29                             4
  CLUS_3                          20                            18
  CLUS_4                          29                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 10(6P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        2      3     19
  DEL PEAK 10(6P22.3) WILD-TYPE     46     41     39
D25V1, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            46
  CLUS_2                           3                            41
  CLUS_3                          19                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        3     11     10
  DEL PEAK 10(6P22.3) WILD-TYPE     53     38     35
D25V2, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                          11                            38
  CLUS_3                          10                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P22.3) MUTATED        2      0      9     10
  DEL PEAK 10(6P22.3) WILD-TYPE     46     14     26     11
D25V3, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            46
  CLUS_2                           0                            14
  CLUS_3                           9                            26
  CLUS_4                          10                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        2      6     13
  DEL PEAK 10(6P22.3) WILD-TYPE     48     19     30
D25V4, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            48
  CLUS_2                           6                            19
  CLUS_3                          13                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        4     10     10
  DEL PEAK 10(6P22.3) WILD-TYPE     66     30     30
D25V5, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                          10                            30
  CLUS_3                          10                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P22.3) MUTATED        2      2      3      4      1      7
  DEL PEAK 10(6P22.3) WILD-TYPE     41     25      9     20      7     16
                               vv
clus                            CLUS_7
  DEL PEAK 10(6P22.3) MUTATED        5
  DEL PEAK 10(6P22.3) WILD-TYPE      8
D25V6, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            41
  CLUS_2                           2                            25
  CLUS_3                           3                             9
  CLUS_4                           4                            20
  CLUS_5                           1                             7
  CLUS_6                           7                            16
  CLUS_7                           5                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        2     12     10
  DEL PEAK 10(6P22.3) WILD-TYPE     50     45     31
D25V7, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            50
  CLUS_2                          12                            45
  CLUS_3                          10                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        4      9     11
  DEL PEAK 10(6P22.3) WILD-TYPE     66     29     31
D25V8, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           9                            29
  CLUS_3                          11                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        4     10     10
  DEL PEAK 10(6P22.3) WILD-TYPE     65     26     35
D25V9, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           4                            65
  CLUS_2                          10                            26
  CLUS_3                          10                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P22.3) MUTATED        1      3     10     10
  DEL PEAK 10(6P22.3) WILD-TYPE     36     30     28     32
D25V10, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           1                            36
  CLUS_2                           3                            30
  CLUS_3                          10                            28
  CLUS_4                          10                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 11(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        6      4     16
  DEL PEAK 11(6Q26) WILD-TYPE     42     40     42
D26V1, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         6                          42
  CLUS_2                         4                          40
  CLUS_3                        16                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        2     14     10
  DEL PEAK 11(6Q26) WILD-TYPE     54     35     35
D26V2, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         2                          54
  CLUS_2                        14                          35
  CLUS_3                        10                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED        4      2      8      9
  DEL PEAK 11(6Q26) WILD-TYPE     44     12     27     12
D26V3, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         4                          44
  CLUS_2                         2                          12
  CLUS_3                         8                          27
  CLUS_4                         9                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        4      7     12
  DEL PEAK 11(6Q26) WILD-TYPE     46     18     31
D26V4, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         4                          46
  CLUS_2                         7                          18
  CLUS_3                        12                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        5     11     10
  DEL PEAK 11(6Q26) WILD-TYPE     65     29     30
D26V5, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         5                          65
  CLUS_2                        11                          29
  CLUS_3                        10                          30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q26) MUTATED        1      4      3      3      3      6      6
  DEL PEAK 11(6Q26) WILD-TYPE     42     23      9     21      5     17      7
D26V6, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         1                          42
  CLUS_2                         4                          23
  CLUS_3                         3                           9
  CLUS_4                         3                          21
  CLUS_5                         3                           5
  CLUS_6                         6                          17
  CLUS_7                         6                           7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        3     13     10
  DEL PEAK 11(6Q26) WILD-TYPE     49     44     31
D26V7, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         3                          49
  CLUS_2                        13                          44
  CLUS_3                        10                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        5     11     10
  DEL PEAK 11(6Q26) WILD-TYPE     65     27     32
D26V8, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         5                          65
  CLUS_2                        11                          27
  CLUS_3                        10                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        5     11     10
  DEL PEAK 11(6Q26) WILD-TYPE     64     25     35
D26V9, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         5                          64
  CLUS_2                        11                          25
  CLUS_3                        10                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED        2      3     11     10
  DEL PEAK 11(6Q26) WILD-TYPE     35     30     27     32
D26V10, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         2                          35
  CLUS_2                         3                          30
  CLUS_3                        11                          27
  CLUS_4                        10                          32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 12(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      1      3
  DEL PEAK 12(7Q11.22) WILD-TYPE     48     43     55
D27V1, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             48
  CLUS_2                            1                             43
  CLUS_3                            3                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     56     49     41
D27V2, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             56
  CLUS_2                            0                             49
  CLUS_3                            4                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4      0
  DEL PEAK 12(7Q11.22) WILD-TYPE     48     14     31     21
D27V3, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             48
  CLUS_2                            0                             14
  CLUS_3                            4                             31
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     50     25     39
D27V4, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             50
  CLUS_2                            0                             25
  CLUS_3                            4                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     70     40     36
D27V5, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             70
  CLUS_2                            0                             40
  CLUS_3                            4                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7Q11.22) MUTATED        0      0      1      1      0      0
  DEL PEAK 12(7Q11.22) WILD-TYPE     43     27     11     23      8     23
                                vv
clus                             CLUS_7
  DEL PEAK 12(7Q11.22) MUTATED        2
  DEL PEAK 12(7Q11.22) WILD-TYPE     11
D27V6, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             43
  CLUS_2                            0                             27
  CLUS_3                            1                             11
  CLUS_4                            1                             23
  CLUS_5                            0                              8
  CLUS_6                            0                             23
  CLUS_7                            2                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     52     57     37
D27V7, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             52
  CLUS_2                            0                             57
  CLUS_3                            4                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     70     38     38
D27V8, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             70
  CLUS_2                            0                             38
  CLUS_3                            4                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     69     36     41
D27V9, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             69
  CLUS_2                            0                             36
  CLUS_3                            4                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7Q11.22) MUTATED        0      0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     37     33     38     38
D27V10, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             37
  CLUS_2                            0                             33
  CLUS_3                            0                             38
  CLUS_4                            4                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 13(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED        1      6      8
  DEL PEAK 13(7Q36.1) WILD-TYPE     47     38     50
D28V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           1                            47
  CLUS_2                           6                            38
  CLUS_3                           8                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED        6      4      5
  DEL PEAK 13(7Q36.1) WILD-TYPE     50     45     40
D28V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           6                            50
  CLUS_2                           4                            45
  CLUS_3                           5                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.1) MUTATED        4      0      7      1
  DEL PEAK 13(7Q36.1) WILD-TYPE     44     14     28     20
D28V3, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           4                            44
  CLUS_2                           0                            14
  CLUS_3                           7                            28
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED        4      0      8
  DEL PEAK 13(7Q36.1) WILD-TYPE     46     25     35
D28V4, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           4                            46
  CLUS_2                           0                            25
  CLUS_3                           8                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED        6      2      7
  DEL PEAK 13(7Q36.1) WILD-TYPE     64     38     33
D28V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           6                            64
  CLUS_2                           2                            38
  CLUS_3                           7                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED        0      6      3      2      0      2
  DEL PEAK 13(7Q36.1) WILD-TYPE     43     21      9     22      8     21
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.1) MUTATED        2
  DEL PEAK 13(7Q36.1) WILD-TYPE     11
D28V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           0                            43
  CLUS_2                           6                            21
  CLUS_3                           3                             9
  CLUS_4                           2                            22
  CLUS_5                           0                             8
  CLUS_6                           2                            21
  CLUS_7                           2                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED        2      8      5
  DEL PEAK 13(7Q36.1) WILD-TYPE     50     49     36
D28V7, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           2                            50
  CLUS_2                           8                            49
  CLUS_3                           5                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED        6      4      5
  DEL PEAK 13(7Q36.1) WILD-TYPE     64     34     37
D28V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           6                            64
  CLUS_2                           4                            34
  CLUS_3                           5                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED        6      2      7
  DEL PEAK 13(7Q36.1) WILD-TYPE     63     34     38
D28V9, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           6                            63
  CLUS_2                           2                            34
  CLUS_3                           7                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.1) MUTATED        0      6      3      6
  DEL PEAK 13(7Q36.1) WILD-TYPE     37     27     35     36
D28V10, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           0                            37
  CLUS_2                           6                            27
  CLUS_3                           3                            35
  CLUS_4                           6                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 14(9P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       17     20     33
  DEL PEAK 14(9P24.3) WILD-TYPE     31     24     25
D29V1, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          17                            31
  CLUS_2                          20                            24
  CLUS_3                          33                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       26     24     20
  DEL PEAK 14(9P24.3) WILD-TYPE     30     25     25
D29V2, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          26                            30
  CLUS_2                          24                            25
  CLUS_3                          20                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P24.3) MUTATED       19      7     19     11
  DEL PEAK 14(9P24.3) WILD-TYPE     29      7     16     10
D29V3, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          19                            29
  CLUS_2                           7                             7
  CLUS_3                          19                            16
  CLUS_4                          11                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       21     12     23
  DEL PEAK 14(9P24.3) WILD-TYPE     29     13     20
D29V4, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          21                            29
  CLUS_2                          12                            13
  CLUS_3                          23                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       32     19     19
  DEL PEAK 14(9P24.3) WILD-TYPE     38     21     21
D29V5, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          32                            38
  CLUS_2                          19                            21
  CLUS_3                          19                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P24.3) MUTATED       18     14      8     11      4     10
  DEL PEAK 14(9P24.3) WILD-TYPE     25     13      4     13      4     13
                               vv
clus                            CLUS_7
  DEL PEAK 14(9P24.3) MUTATED        5
  DEL PEAK 14(9P24.3) WILD-TYPE      8
D29V6, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          18                            25
  CLUS_2                          14                            13
  CLUS_3                           8                             4
  CLUS_4                          11                            13
  CLUS_5                           4                             4
  CLUS_6                          10                            13
  CLUS_7                           5                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       21     31     18
  DEL PEAK 14(9P24.3) WILD-TYPE     31     26     23
D29V7, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          21                            31
  CLUS_2                          31                            26
  CLUS_3                          18                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       32     20     18
  DEL PEAK 14(9P24.3) WILD-TYPE     38     18     24
D29V8, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          32                            38
  CLUS_2                          20                            18
  CLUS_3                          18                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       32     17     21
  DEL PEAK 14(9P24.3) WILD-TYPE     37     19     24
D29V9, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          32                            37
  CLUS_2                          17                            19
  CLUS_3                          21                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P24.3) MUTATED       15     17     19     19
  DEL PEAK 14(9P24.3) WILD-TYPE     22     16     19     23
D29V10, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          15                            22
  CLUS_2                          17                            16
  CLUS_3                          19                            19
  CLUS_4                          19                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 15(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       16     17     33
  DEL PEAK 15(9P23) WILD-TYPE     32     27     25
D30V1, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        16                          32
  CLUS_2                        17                          27
  CLUS_3                        33                          25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       26     21     19
  DEL PEAK 15(9P23) WILD-TYPE     30     28     26
D30V2, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        26                          30
  CLUS_2                        21                          28
  CLUS_3                        19                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       17      7     19     10
  DEL PEAK 15(9P23) WILD-TYPE     31      7     16     11
D30V3, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        17                          31
  CLUS_2                         7                           7
  CLUS_3                        19                          16
  CLUS_4                        10                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       19     12     22
  DEL PEAK 15(9P23) WILD-TYPE     31     13     21
D30V4, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        19                          31
  CLUS_2                        12                          13
  CLUS_3                        22                          21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       30     17     19
  DEL PEAK 15(9P23) WILD-TYPE     40     23     21
D30V5, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        30                          40
  CLUS_2                        17                          23
  CLUS_3                        19                          21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(9P23) MUTATED       16     14      8     11      2     10      5
  DEL PEAK 15(9P23) WILD-TYPE     27     13      4     13      6     13      8
D30V6, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        16                          27
  CLUS_2                        14                          13
  CLUS_3                         8                           4
  CLUS_4                        11                          13
  CLUS_5                         2                           6
  CLUS_6                        10                          13
  CLUS_7                         5                           8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       20     28     18
  DEL PEAK 15(9P23) WILD-TYPE     32     29     23
D30V7, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        20                          32
  CLUS_2                        28                          29
  CLUS_3                        18                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       30     18     18
  DEL PEAK 15(9P23) WILD-TYPE     40     20     24
D30V8, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        30                          40
  CLUS_2                        18                          20
  CLUS_3                        18                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       30     15     21
  DEL PEAK 15(9P23) WILD-TYPE     39     21     24
D30V9, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        30                          39
  CLUS_2                        15                          21
  CLUS_3                        21                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       14     16     17     19
  DEL PEAK 15(9P23) WILD-TYPE     23     17     21     23
D30V10, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        14                          23
  CLUS_2                        16                          17
  CLUS_3                        17                          21
  CLUS_4                        19                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 16(9Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       12     13     35
  DEL PEAK 16(9Q33.3) WILD-TYPE     36     31     23
D31V1, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          12                            36
  CLUS_2                          13                            31
  CLUS_3                          35                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       19     23     18
  DEL PEAK 16(9Q33.3) WILD-TYPE     37     26     27
D31V2, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          19                            37
  CLUS_2                          23                            26
  CLUS_3                          18                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9Q33.3) MUTATED       13      5     19     10
  DEL PEAK 16(9Q33.3) WILD-TYPE     35      9     16     11
D31V3, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          13                            35
  CLUS_2                           5                             9
  CLUS_3                          19                            16
  CLUS_4                          10                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       14     12     21
  DEL PEAK 16(9Q33.3) WILD-TYPE     36     13     22
D31V4, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          14                            36
  CLUS_2                          12                            13
  CLUS_3                          21                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       22     20     18
  DEL PEAK 16(9Q33.3) WILD-TYPE     48     20     22
D31V5, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          20                            20
  CLUS_3                          18                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9Q33.3) MUTATED       14      8      9     12      1     13
  DEL PEAK 16(9Q33.3) WILD-TYPE     29     19      3     12      7     10
                               vv
clus                            CLUS_7
  DEL PEAK 16(9Q33.3) MUTATED        3
  DEL PEAK 16(9Q33.3) WILD-TYPE     10
D31V6, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          14                            29
  CLUS_2                           8                            19
  CLUS_3                           9                             3
  CLUS_4                          12                            12
  CLUS_5                           1                             7
  CLUS_6                          13                            10
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       18     25     17
  DEL PEAK 16(9Q33.3) WILD-TYPE     34     32     24
D31V7, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          18                            34
  CLUS_2                          25                            32
  CLUS_3                          17                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       22     21     17
  DEL PEAK 16(9Q33.3) WILD-TYPE     48     17     25
D31V8, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          21                            17
  CLUS_3                          17                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       22     17     21
  DEL PEAK 16(9Q33.3) WILD-TYPE     47     19     24
D31V9, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          22                            47
  CLUS_2                          17                            19
  CLUS_3                          21                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9Q33.3) MUTATED       11     11     20     18
  DEL PEAK 16(9Q33.3) WILD-TYPE     26     22     18     24
D31V10, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          11                            26
  CLUS_2                          11                            22
  CLUS_3                          20                            18
  CLUS_4                          18                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 17(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       12     13     35
  DEL PEAK 17(9Q34.2) WILD-TYPE     36     31     23
D32V1, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          12                            36
  CLUS_2                          13                            31
  CLUS_3                          35                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       19     24     17
  DEL PEAK 17(9Q34.2) WILD-TYPE     37     25     28
D32V2, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          19                            37
  CLUS_2                          24                            25
  CLUS_3                          17                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.2) MUTATED       13      5     18     11
  DEL PEAK 17(9Q34.2) WILD-TYPE     35      9     17     10
D32V3, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          13                            35
  CLUS_2                           5                             9
  CLUS_3                          18                            17
  CLUS_4                          11                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       14     12     21
  DEL PEAK 17(9Q34.2) WILD-TYPE     36     13     22
D32V4, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          14                            36
  CLUS_2                          12                            13
  CLUS_3                          21                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       22     21     17
  DEL PEAK 17(9Q34.2) WILD-TYPE     48     19     23
D32V5, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          21                            19
  CLUS_3                          17                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.2) MUTATED       14      8      9     12      1     14
  DEL PEAK 17(9Q34.2) WILD-TYPE     29     19      3     12      7      9
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.2) MUTATED        2
  DEL PEAK 17(9Q34.2) WILD-TYPE     11
D32V6, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          14                            29
  CLUS_2                           8                            19
  CLUS_3                           9                             3
  CLUS_4                          12                            12
  CLUS_5                           1                             7
  CLUS_6                          14                             9
  CLUS_7                           2                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       18     26     16
  DEL PEAK 17(9Q34.2) WILD-TYPE     34     31     25
D32V7, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          18                            34
  CLUS_2                          26                            31
  CLUS_3                          16                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       22     22     16
  DEL PEAK 17(9Q34.2) WILD-TYPE     48     16     26
D32V8, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          22                            16
  CLUS_3                          16                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       22     18     20
  DEL PEAK 17(9Q34.2) WILD-TYPE     47     18     25
D32V9, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          22                            47
  CLUS_2                          18                            18
  CLUS_3                          20                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.2) MUTATED       11     11     21     17
  DEL PEAK 17(9Q34.2) WILD-TYPE     26     22     17     25
D32V10, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          11                            26
  CLUS_2                          11                            22
  CLUS_3                          21                            17
  CLUS_4                          17                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 18(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       20     21     43
  DEL PEAK 18(10P15.3) WILD-TYPE     28     23     15
D33V1, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           20                             28
  CLUS_2                           21                             23
  CLUS_3                           43                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       21     37     26
  DEL PEAK 18(10P15.3) WILD-TYPE     35     12     19
D33V2, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           21                             35
  CLUS_2                           37                             12
  CLUS_3                           26                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       18      7     22     18
  DEL PEAK 18(10P15.3) WILD-TYPE     30      7     13      3
D33V3, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           18                             30
  CLUS_2                            7                              7
  CLUS_3                           22                             13
  CLUS_4                           18                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       19     16     30
  DEL PEAK 18(10P15.3) WILD-TYPE     31      9     13
D33V4, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           19                             31
  CLUS_2                           16                              9
  CLUS_3                           30                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       28     32     24
  DEL PEAK 18(10P15.3) WILD-TYPE     42      8     16
D33V5, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           28                             42
  CLUS_2                           32                              8
  CLUS_3                           24                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       16     12      8     14      5     21
  DEL PEAK 18(10P15.3) WILD-TYPE     27     15      4     10      3      2
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED        8
  DEL PEAK 18(10P15.3) WILD-TYPE      5
D33V6, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           16                             27
  CLUS_2                           12                             15
  CLUS_3                            8                              4
  CLUS_4                           14                             10
  CLUS_5                            5                              3
  CLUS_6                           21                              2
  CLUS_7                            8                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       21     37     26
  DEL PEAK 18(10P15.3) WILD-TYPE     31     20     15
D33V7, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           21                             31
  CLUS_2                           37                             20
  CLUS_3                           26                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       28     29     27
  DEL PEAK 18(10P15.3) WILD-TYPE     42      9     15
D33V8, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           28                             42
  CLUS_2                           29                              9
  CLUS_3                           27                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       28     29     27
  DEL PEAK 18(10P15.3) WILD-TYPE     41      7     18
D33V9, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           28                             41
  CLUS_2                           29                              7
  CLUS_3                           27                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       12     16     30     26
  DEL PEAK 18(10P15.3) WILD-TYPE     25     17      8     16
D33V10, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                           16                             17
  CLUS_3                           30                              8
  CLUS_4                           26                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 19(10Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       19     15     37
  DEL PEAK 19(10Q23.1) WILD-TYPE     29     29     21
D34V1, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           19                             29
  CLUS_2                           15                             29
  CLUS_3                           37                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       15     37     19
  DEL PEAK 19(10Q23.1) WILD-TYPE     41     12     26
D34V2, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           15                             41
  CLUS_2                           37                             12
  CLUS_3                           19                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.1) MUTATED       15      6     19     15
  DEL PEAK 19(10Q23.1) WILD-TYPE     33      8     16      6
D34V3, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           15                             33
  CLUS_2                            6                              8
  CLUS_3                           19                             16
  CLUS_4                           15                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       16     14     25
  DEL PEAK 19(10Q23.1) WILD-TYPE     34     11     18
D34V4, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           16                             34
  CLUS_2                           14                             11
  CLUS_3                           25                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       22     31     18
  DEL PEAK 19(10Q23.1) WILD-TYPE     48      9     22
D34V5, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           22                             48
  CLUS_2                           31                              9
  CLUS_3                           18                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.1) MUTATED       14      8      9     12      5     19
  DEL PEAK 19(10Q23.1) WILD-TYPE     29     19      3     12      3      4
                                vv
clus                             CLUS_7
  DEL PEAK 19(10Q23.1) MUTATED        4
  DEL PEAK 19(10Q23.1) WILD-TYPE      9
D34V6, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           14                             29
  CLUS_2                            8                             19
  CLUS_3                            9                              3
  CLUS_4                           12                             12
  CLUS_5                            5                              3
  CLUS_6                           19                              4
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       17     34     20
  DEL PEAK 19(10Q23.1) WILD-TYPE     35     23     21
D34V7, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           17                             35
  CLUS_2                           34                             23
  CLUS_3                           20                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       22     29     20
  DEL PEAK 19(10Q23.1) WILD-TYPE     48      9     22
D34V8, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           22                             48
  CLUS_2                           29                              9
  CLUS_3                           20                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       22     27     22
  DEL PEAK 19(10Q23.1) WILD-TYPE     47      9     23
D34V9, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           22                             47
  CLUS_2                           27                              9
  CLUS_3                           22                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.1) MUTATED       10     12     29     20
  DEL PEAK 19(10Q23.1) WILD-TYPE     27     21      9     22
D34V10, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                           12                             21
  CLUS_3                           29                              9
  CLUS_4                           20                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 20(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       18     17     41
  DEL PEAK 20(10Q26.3) WILD-TYPE     30     27     17
D35V1, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           18                             30
  CLUS_2                           17                             27
  CLUS_3                           41                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       16     38     22
  DEL PEAK 20(10Q26.3) WILD-TYPE     40     11     23
D35V2, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           16                             40
  CLUS_2                           38                             11
  CLUS_3                           22                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       15      7     21     15
  DEL PEAK 20(10Q26.3) WILD-TYPE     33      7     14      6
D35V3, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           15                             33
  CLUS_2                            7                              7
  CLUS_3                           21                             14
  CLUS_4                           15                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       16     15     27
  DEL PEAK 20(10Q26.3) WILD-TYPE     34     10     16
D35V4, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           16                             34
  CLUS_2                           15                             10
  CLUS_3                           27                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       24     33     19
  DEL PEAK 20(10Q26.3) WILD-TYPE     46      7     21
D35V5, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           24                             46
  CLUS_2                           33                              7
  CLUS_3                           19                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       16      8     10     13      6     19
  DEL PEAK 20(10Q26.3) WILD-TYPE     27     19      2     11      2      4
                                vv
clus                             CLUS_7
  DEL PEAK 20(10Q26.3) MUTATED        4
  DEL PEAK 20(10Q26.3) WILD-TYPE      9
D35V6, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           16                             27
  CLUS_2                            8                             19
  CLUS_3                           10                              2
  CLUS_4                           13                             11
  CLUS_5                            6                              2
  CLUS_6                           19                              4
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       19     36     21
  DEL PEAK 20(10Q26.3) WILD-TYPE     33     21     20
D35V7, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           19                             33
  CLUS_2                           36                             21
  CLUS_3                           21                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       24     30     22
  DEL PEAK 20(10Q26.3) WILD-TYPE     46      8     20
D35V8, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           24                             46
  CLUS_2                           30                              8
  CLUS_3                           22                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       24     29     23
  DEL PEAK 20(10Q26.3) WILD-TYPE     45      7     22
D35V9, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           24                             45
  CLUS_2                           29                              7
  CLUS_3                           23                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       12     12     31     21
  DEL PEAK 20(10Q26.3) WILD-TYPE     25     21      7     21
D35V10, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                           12                             21
  CLUS_3                           31                              7
  CLUS_4                           21                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 21(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       24     34     36
  DEL PEAK 21(11P15.5) WILD-TYPE     24     10     22
D36V1, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           24                             24
  CLUS_2                           34                             10
  CLUS_3                           36                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       39     31     24
  DEL PEAK 21(11P15.5) WILD-TYPE     17     18     21
D36V2, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           39                             17
  CLUS_2                           31                             18
  CLUS_3                           24                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       32      7     19     13
  DEL PEAK 21(11P15.5) WILD-TYPE     16      7     16      8
D36V3, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           32                             16
  CLUS_2                            7                              7
  CLUS_3                           19                             16
  CLUS_4                           13                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       33     13     25
  DEL PEAK 21(11P15.5) WILD-TYPE     17     12     18
D36V4, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           33                             17
  CLUS_2                           13                             12
  CLUS_3                           25                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       51     27     16
  DEL PEAK 21(11P15.5) WILD-TYPE     19     13     24
D36V5, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           51                             19
  CLUS_2                           27                             13
  CLUS_3                           16                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       31     20      8     12      4     17
  DEL PEAK 21(11P15.5) WILD-TYPE     12      7      4     12      4      6
                                vv
clus                             CLUS_7
  DEL PEAK 21(11P15.5) MUTATED        2
  DEL PEAK 21(11P15.5) WILD-TYPE     11
D36V6, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           31                             12
  CLUS_2                           20                              7
  CLUS_3                            8                              4
  CLUS_4                           12                             12
  CLUS_5                            4                              4
  CLUS_6                           17                              6
  CLUS_7                            2                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       36     41     17
  DEL PEAK 21(11P15.5) WILD-TYPE     16     16     24
D36V7, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           36                             16
  CLUS_2                           41                             16
  CLUS_3                           17                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       51     26     17
  DEL PEAK 21(11P15.5) WILD-TYPE     19     12     25
D36V8, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           51                             19
  CLUS_2                           26                             12
  CLUS_3                           17                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       51     23     20
  DEL PEAK 21(11P15.5) WILD-TYPE     18     13     25
D36V9, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           51                             18
  CLUS_2                           23                             13
  CLUS_3                           20                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       27     24     26     17
  DEL PEAK 21(11P15.5) WILD-TYPE     10      9     12     25
D36V10, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           27                             10
  CLUS_2                           24                              9
  CLUS_3                           26                             12
  CLUS_4                           17                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 22(11P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       27     35     37
  DEL PEAK 22(11P12) WILD-TYPE     21      9     21
D37V1, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         27                           21
  CLUS_2                         35                            9
  CLUS_3                         37                           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       40     35     24
  DEL PEAK 22(11P12) WILD-TYPE     16     14     21
D37V2, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         40                           16
  CLUS_2                         35                           14
  CLUS_3                         24                           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P12) MUTATED       33      7     20     14
  DEL PEAK 22(11P12) WILD-TYPE     15      7     15      7
D37V3, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         33                           15
  CLUS_2                          7                            7
  CLUS_3                         20                           15
  CLUS_4                         14                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       34     14     26
  DEL PEAK 22(11P12) WILD-TYPE     16     11     17
D37V4, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         34                           16
  CLUS_2                         14                           11
  CLUS_3                         26                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       52     30     17
  DEL PEAK 22(11P12) WILD-TYPE     18     10     23
D37V5, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         52                           18
  CLUS_2                         30                           10
  CLUS_3                         17                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(11P12) MUTATED       31     21      8     12      5     19      3
  DEL PEAK 22(11P12) WILD-TYPE     12      6      4     12      3      4     10
D37V6, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         31                           12
  CLUS_2                         21                            6
  CLUS_3                          8                            4
  CLUS_4                         12                           12
  CLUS_5                          5                            3
  CLUS_6                         19                            4
  CLUS_7                          3                           10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       37     44     18
  DEL PEAK 22(11P12) WILD-TYPE     15     13     23
D37V7, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         37                           15
  CLUS_2                         44                           13
  CLUS_3                         18                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       52     29     18
  DEL PEAK 22(11P12) WILD-TYPE     18      9     24
D37V8, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         52                           18
  CLUS_2                         29                            9
  CLUS_3                         18                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       51     27     21
  DEL PEAK 22(11P12) WILD-TYPE     18      9     24
D37V9, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         51                           18
  CLUS_2                         27                            9
  CLUS_3                         21                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P12) MUTATED       28     24     29     18
  DEL PEAK 22(11P12) WILD-TYPE      9      9      9     24
D37V10, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         28                            9
  CLUS_2                         24                            9
  CLUS_3                         29                            9
  CLUS_4                         18                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 23(11Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       30     43     41
  DEL PEAK 23(11Q12.3) WILD-TYPE     18      1     17
D38V1, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           30                             18
  CLUS_2                           43                              1
  CLUS_3                           41                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       46     38     30
  DEL PEAK 23(11Q12.3) WILD-TYPE     10     11     15
D38V2, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           46                             10
  CLUS_2                           38                             11
  CLUS_3                           30                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q12.3) MUTATED       42      9     21     15
  DEL PEAK 23(11Q12.3) WILD-TYPE      6      5     14      6
D38V3, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           42                              6
  CLUS_2                            9                              5
  CLUS_3                           21                             14
  CLUS_4                           15                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       43     16     28
  DEL PEAK 23(11Q12.3) WILD-TYPE      7      9     15
D38V4, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           43                              7
  CLUS_2                           16                              9
  CLUS_3                           28                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       62     32     20
  DEL PEAK 23(11Q12.3) WILD-TYPE      8      8     20
D38V5, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           62                              8
  CLUS_2                           32                              8
  CLUS_3                           20                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q12.3) MUTATED       35     27      9     14      6     20
  DEL PEAK 23(11Q12.3) WILD-TYPE      8      0      3     10      2      3
                                vv
clus                             CLUS_7
  DEL PEAK 23(11Q12.3) MUTATED        3
  DEL PEAK 23(11Q12.3) WILD-TYPE     10
D38V6, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           35                              8
  CLUS_2                           27                              0
  CLUS_3                            9                              3
  CLUS_4                           14                             10
  CLUS_5                            6                              2
  CLUS_6                           20                              3
  CLUS_7                            3                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       44     50     20
  DEL PEAK 23(11Q12.3) WILD-TYPE      8      7     21
D38V7, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           44                              8
  CLUS_2                           50                              7
  CLUS_3                           20                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       62     32     20
  DEL PEAK 23(11Q12.3) WILD-TYPE      8      6     22
D38V8, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           62                              8
  CLUS_2                           32                              6
  CLUS_3                           20                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       61     30     23
  DEL PEAK 23(11Q12.3) WILD-TYPE      8      6     22
D38V9, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           61                              8
  CLUS_2                           30                              6
  CLUS_3                           23                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q12.3) MUTATED       30     32     31     21
  DEL PEAK 23(11Q12.3) WILD-TYPE      7      1      7     21
D38V10, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           30                              7
  CLUS_2                           32                              1
  CLUS_3                           31                              7
  CLUS_4                           21                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 24(11Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.2) MUTATED       33     44     45
  DEL PEAK 24(11Q24.2) WILD-TYPE     15      0     13
D39V1, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           33                             15
  CLUS_2                           44                              0
  CLUS_3                           45                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.2) MUTATED       47     40     35
  DEL PEAK 24(11Q24.2) WILD-TYPE      9      9     10
D39V2, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           47                              9
  CLUS_2                           40                              9
  CLUS_3                           35                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q24.2) MUTATED       42     11     26     16
  DEL PEAK 24(11Q24.2) WILD-TYPE      6      3      9      5
D39V3, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           42                              6
  CLUS_2                           11                              3
  CLUS_3                           26                              9
  CLUS_4                           16                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.2) MUTATED       43     18     34
  DEL PEAK 24(11Q24.2) WILD-TYPE      7      7      9
D39V4, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           43                              7
  CLUS_2                           18                              7
  CLUS_3                           34                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.2) MUTATED       62     34     26
  DEL PEAK 24(11Q24.2) WILD-TYPE      8      6     14
D39V5, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           62                              8
  CLUS_2                           34                              6
  CLUS_3                           26                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q24.2) MUTATED       35     27     10     18      7     20
  DEL PEAK 24(11Q24.2) WILD-TYPE      8      0      2      6      1      3
                                vv
clus                             CLUS_7
  DEL PEAK 24(11Q24.2) MUTATED        5
  DEL PEAK 24(11Q24.2) WILD-TYPE      8
D39V6, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           35                              8
  CLUS_2                           27                              0
  CLUS_3                           10                              2
  CLUS_4                           18                              6
  CLUS_5                            7                              1
  CLUS_6                           20                              3
  CLUS_7                            5                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.2) MUTATED       44     51     27
  DEL PEAK 24(11Q24.2) WILD-TYPE      8      6     14
D39V7, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           44                              8
  CLUS_2                           51                              6
  CLUS_3                           27                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.2) MUTATED       62     33     27
  DEL PEAK 24(11Q24.2) WILD-TYPE      8      5     15
D39V8, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           62                              8
  CLUS_2                           33                              5
  CLUS_3                           27                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.2) MUTATED       61     31     30
  DEL PEAK 24(11Q24.2) WILD-TYPE      8      5     15
D39V9, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           61                              8
  CLUS_2                           31                              5
  CLUS_3                           30                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q24.2) MUTATED       29     33     32     28
  DEL PEAK 24(11Q24.2) WILD-TYPE      8      0      6     14
D39V10, multiclass
        clus
vv       DEL PEAK 24(11Q24.2) MUTATED DEL PEAK 24(11Q24.2) WILD-TYPE
  CLUS_1                           29                              8
  CLUS_2                           33                              0
  CLUS_3                           32                              6
  CLUS_4                           28                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 25(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       33     39     41
  DEL PEAK 25(13Q34) WILD-TYPE     15      5     17
D40V1, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         33                           15
  CLUS_2                         39                            5
  CLUS_3                         41                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       45     36     32
  DEL PEAK 25(13Q34) WILD-TYPE     11     13     13
D40V2, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         45                           11
  CLUS_2                         36                           13
  CLUS_3                         32                           13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED       39      8     25     16
  DEL PEAK 25(13Q34) WILD-TYPE      9      6     10      5
D40V3, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         39                            9
  CLUS_2                          8                            6
  CLUS_3                         25                           10
  CLUS_4                         16                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       40     15     33
  DEL PEAK 25(13Q34) WILD-TYPE     10     10     10
D40V4, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         40                           10
  CLUS_2                         15                           10
  CLUS_3                         33                           10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       57     31     25
  DEL PEAK 25(13Q34) WILD-TYPE     13      9     15
D40V5, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         57                           13
  CLUS_2                         31                            9
  CLUS_3                         25                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 25(13Q34) MUTATED       30     27     11     15      6     17      7
  DEL PEAK 25(13Q34) WILD-TYPE     13      0      1      9      2      6      6
D40V6, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         30                           13
  CLUS_2                         27                            0
  CLUS_3                         11                            1
  CLUS_4                         15                            9
  CLUS_5                          6                            2
  CLUS_6                         17                            6
  CLUS_7                          7                            6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       42     45     26
  DEL PEAK 25(13Q34) WILD-TYPE     10     12     15
D40V7, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         42                           10
  CLUS_2                         45                           12
  CLUS_3                         26                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       57     29     27
  DEL PEAK 25(13Q34) WILD-TYPE     13      9     15
D40V8, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         57                           13
  CLUS_2                         29                            9
  CLUS_3                         27                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       56     27     30
  DEL PEAK 25(13Q34) WILD-TYPE     13      9     15
D40V9, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         56                           13
  CLUS_2                         27                            9
  CLUS_3                         30                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED       25     32     29     27
  DEL PEAK 25(13Q34) WILD-TYPE     12      1      9     15
D40V10, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         25                           12
  CLUS_2                         32                            1
  CLUS_3                         29                            9
  CLUS_4                         27                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 26(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       14     29     23
  DEL PEAK 26(16Q23.1) WILD-TYPE     34     15     35
D41V1, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           14                             34
  CLUS_2                           29                             15
  CLUS_3                           23                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       24     26     16
  DEL PEAK 26(16Q23.1) WILD-TYPE     32     23     29
D41V2, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           24                             32
  CLUS_2                           26                             23
  CLUS_3                           16                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(16Q23.1) MUTATED       20      7     15      9
  DEL PEAK 26(16Q23.1) WILD-TYPE     28      7     20     12
D41V3, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           20                             28
  CLUS_2                            7                              7
  CLUS_3                           15                             20
  CLUS_4                            9                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       22      8     21
  DEL PEAK 26(16Q23.1) WILD-TYPE     28     17     22
D41V4, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           22                             28
  CLUS_2                            8                             17
  CLUS_3                           21                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       32     20     14
  DEL PEAK 26(16Q23.1) WILD-TYPE     38     20     26
D41V5, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           32                             38
  CLUS_2                           20                             20
  CLUS_3                           14                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16Q23.1) MUTATED       16     16      6      8      4     12
  DEL PEAK 26(16Q23.1) WILD-TYPE     27     11      6     16      4     11
                                vv
clus                             CLUS_7
  DEL PEAK 26(16Q23.1) MUTATED        4
  DEL PEAK 26(16Q23.1) WILD-TYPE      9
D41V6, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           16                             27
  CLUS_2                           16                             11
  CLUS_3                            6                              6
  CLUS_4                            8                             16
  CLUS_5                            4                              4
  CLUS_6                           12                             11
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       21     31     14
  DEL PEAK 26(16Q23.1) WILD-TYPE     31     26     27
D41V7, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           21                             31
  CLUS_2                           31                             26
  CLUS_3                           14                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       32     20     14
  DEL PEAK 26(16Q23.1) WILD-TYPE     38     18     28
D41V8, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           32                             38
  CLUS_2                           20                             18
  CLUS_3                           14                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       31     18     17
  DEL PEAK 26(16Q23.1) WILD-TYPE     38     18     28
D41V9, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           31                             38
  CLUS_2                           18                             18
  CLUS_3                           17                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(16Q23.1) MUTATED       13     19     18     16
  DEL PEAK 26(16Q23.1) WILD-TYPE     24     14     20     26
D41V10, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           13                             24
  CLUS_2                           19                             14
  CLUS_3                           18                             20
  CLUS_4                           16                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 27(18P11.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18P11.32) MUTATED       36     36     46
  DEL PEAK 27(18P11.32) WILD-TYPE     12      8     12
D42V1, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            36                              12
  CLUS_2                            36                               8
  CLUS_3                            46                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18P11.32) MUTATED       43     43     32
  DEL PEAK 27(18P11.32) WILD-TYPE     13      6     13
D42V2, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            43                              13
  CLUS_2                            43                               6
  CLUS_3                            32                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(18P11.32) MUTATED       36     10     28     16
  DEL PEAK 27(18P11.32) WILD-TYPE     12      4      7      5
D42V3, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            36                              12
  CLUS_2                            10                               4
  CLUS_3                            28                               7
  CLUS_4                            16                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18P11.32) MUTATED       37     19     34
  DEL PEAK 27(18P11.32) WILD-TYPE     13      6      9
D42V4, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            37                              13
  CLUS_2                            19                               6
  CLUS_3                            34                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18P11.32) MUTATED       55     36     27
  DEL PEAK 27(18P11.32) WILD-TYPE     15      4     13
D42V5, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            55                              15
  CLUS_2                            36                               4
  CLUS_3                            27                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(18P11.32) MUTATED       34     21     11     15      7     21
  DEL PEAK 27(18P11.32) WILD-TYPE      9      6      1      9      1      2
                                 vv
clus                              CLUS_7
  DEL PEAK 27(18P11.32) MUTATED        9
  DEL PEAK 27(18P11.32) WILD-TYPE      4
D42V6, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            34                               9
  CLUS_2                            21                               6
  CLUS_3                            11                               1
  CLUS_4                            15                               9
  CLUS_5                             7                               1
  CLUS_6                            21                               2
  CLUS_7                             9                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18P11.32) MUTATED       41     49     28
  DEL PEAK 27(18P11.32) WILD-TYPE     11      8     13
D42V7, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            41                              11
  CLUS_2                            49                               8
  CLUS_3                            28                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18P11.32) MUTATED       55     35     28
  DEL PEAK 27(18P11.32) WILD-TYPE     15      3     14
D42V8, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            55                              15
  CLUS_2                            35                               3
  CLUS_3                            28                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18P11.32) MUTATED       55     31     32
  DEL PEAK 27(18P11.32) WILD-TYPE     14      5     13
D42V9, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            55                              14
  CLUS_2                            31                               5
  CLUS_3                            32                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(18P11.32) MUTATED       28     27     34     29
  DEL PEAK 27(18P11.32) WILD-TYPE      9      6      4     13
D42V10, multiclass
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            28                               9
  CLUS_2                            27                               6
  CLUS_3                            34                               4
  CLUS_4                            29                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 28(18Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       35     40     50
  DEL PEAK 28(18Q22.2) WILD-TYPE     13      4      8
D43V1, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           35                             13
  CLUS_2                           40                              4
  CLUS_3                           50                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       45     45     35
  DEL PEAK 28(18Q22.2) WILD-TYPE     11      4     10
D43V2, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           45                             11
  CLUS_2                           45                              4
  CLUS_3                           35                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q22.2) MUTATED       39     11     30     17
  DEL PEAK 28(18Q22.2) WILD-TYPE      9      3      5      4
D43V3, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           39                              9
  CLUS_2                           11                              3
  CLUS_3                           30                              5
  CLUS_4                           17                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       40     21     36
  DEL PEAK 28(18Q22.2) WILD-TYPE     10      4      7
D43V4, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           40                             10
  CLUS_2                           21                              4
  CLUS_3                           36                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       58     37     30
  DEL PEAK 28(18Q22.2) WILD-TYPE     12      3     10
D43V5, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           58                             12
  CLUS_2                           37                              3
  CLUS_3                           30                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18Q22.2) MUTATED       33     25     12     17      7     21
  DEL PEAK 28(18Q22.2) WILD-TYPE     10      2      0      7      1      2
                                vv
clus                             CLUS_7
  DEL PEAK 28(18Q22.2) MUTATED       10
  DEL PEAK 28(18Q22.2) WILD-TYPE      3
D43V6, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           33                             10
  CLUS_2                           25                              2
  CLUS_3                           12                              0
  CLUS_4                           17                              7
  CLUS_5                            7                              1
  CLUS_6                           21                              2
  CLUS_7                           10                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       42     52     31
  DEL PEAK 28(18Q22.2) WILD-TYPE     10      5     10
D43V7, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           42                             10
  CLUS_2                           52                              5
  CLUS_3                           31                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       58     36     31
  DEL PEAK 28(18Q22.2) WILD-TYPE     12      2     11
D43V8, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           58                             12
  CLUS_2                           36                              2
  CLUS_3                           31                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       57     33     35
  DEL PEAK 28(18Q22.2) WILD-TYPE     12      3     10
D43V9, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           57                             12
  CLUS_2                           33                              3
  CLUS_3                           35                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q22.2) MUTATED       27     31     35     32
  DEL PEAK 28(18Q22.2) WILD-TYPE     10      2      3     10
D43V10, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           27                             10
  CLUS_2                           31                              2
  CLUS_3                           35                              3
  CLUS_4                           32                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 29(19Q13.41) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.41) MUTATED       14      7     37
  DEL PEAK 29(19Q13.41) WILD-TYPE     34     37     21
D44V1, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                            14                              34
  CLUS_2                             7                              37
  CLUS_3                            37                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.41) MUTATED        2     37     19
  DEL PEAK 29(19Q13.41) WILD-TYPE     54     12     26
D44V2, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             2                              54
  CLUS_2                            37                              12
  CLUS_3                            19                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19Q13.41) MUTATED        1      6     23     17
  DEL PEAK 29(19Q13.41) WILD-TYPE     47      8     12      4
D44V3, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             1                              47
  CLUS_2                             6                               8
  CLUS_3                            23                              12
  CLUS_4                            17                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.41) MUTATED        1     15     31
  DEL PEAK 29(19Q13.41) WILD-TYPE     49     10     12
D44V4, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             1                              49
  CLUS_2                            15                              10
  CLUS_3                            31                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.41) MUTATED        1     33     24
  DEL PEAK 29(19Q13.41) WILD-TYPE     69      7     16
D44V5, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             1                              69
  CLUS_2                            33                               7
  CLUS_3                            24                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(19Q13.41) MUTATED        0      1     11     14      5     20
  DEL PEAK 29(19Q13.41) WILD-TYPE     43     26      1     10      3      3
                                 vv
clus                              CLUS_7
  DEL PEAK 29(19Q13.41) MUTATED        7
  DEL PEAK 29(19Q13.41) WILD-TYPE      6
D44V6, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             0                              43
  CLUS_2                             1                              26
  CLUS_3                            11                               1
  CLUS_4                            14                              10
  CLUS_5                             5                               3
  CLUS_6                            20                               3
  CLUS_7                             7                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.41) MUTATED        1     32     25
  DEL PEAK 29(19Q13.41) WILD-TYPE     51     25     16
D44V7, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             1                              51
  CLUS_2                            32                              25
  CLUS_3                            25                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.41) MUTATED        1     32     25
  DEL PEAK 29(19Q13.41) WILD-TYPE     69      6     17
D44V8, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             1                              69
  CLUS_2                            32                               6
  CLUS_3                            25                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.41) MUTATED        1     28     29
  DEL PEAK 29(19Q13.41) WILD-TYPE     68      8     16
D44V9, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             1                              68
  CLUS_2                            28                               8
  CLUS_3                            29                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19Q13.41) MUTATED        0      1     31     26
  DEL PEAK 29(19Q13.41) WILD-TYPE     37     32      7     16
D44V10, multiclass
        clus
vv       DEL PEAK 29(19Q13.41) MUTATED DEL PEAK 29(19Q13.41) WILD-TYPE
  CLUS_1                             0                              37
  CLUS_2                             1                              32
  CLUS_3                            31                               7
  CLUS_4                            26                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 30(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        6      9     14
  DEL PEAK 30(20P12.1) WILD-TYPE     42     35     44
D45V1, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            6                             42
  CLUS_2                            9                             35
  CLUS_3                           14                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        9     13      7
  DEL PEAK 30(20P12.1) WILD-TYPE     47     36     38
D45V2, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            9                             47
  CLUS_2                           13                             36
  CLUS_3                            7                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(20P12.1) MUTATED        7      4      6      6
  DEL PEAK 30(20P12.1) WILD-TYPE     41     10     29     15
D45V3, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            7                             41
  CLUS_2                            4                             10
  CLUS_3                            6                             29
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        8      7      8
  DEL PEAK 30(20P12.1) WILD-TYPE     42     18     35
D45V4, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            8                             42
  CLUS_2                            7                             18
  CLUS_3                            8                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED       11     11      7
  DEL PEAK 30(20P12.1) WILD-TYPE     59     29     33
D45V5, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                           11                             59
  CLUS_2                           11                             29
  CLUS_3                            7                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(20P12.1) MUTATED        3      8      3      5      2      7
  DEL PEAK 30(20P12.1) WILD-TYPE     40     19      9     19      6     16
                                vv
clus                             CLUS_7
  DEL PEAK 30(20P12.1) MUTATED        1
  DEL PEAK 30(20P12.1) WILD-TYPE     12
D45V6, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            3                             40
  CLUS_2                            8                             19
  CLUS_3                            3                              9
  CLUS_4                            5                             19
  CLUS_5                            2                              6
  CLUS_6                            7                             16
  CLUS_7                            1                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        5     17      7
  DEL PEAK 30(20P12.1) WILD-TYPE     47     40     34
D45V7, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            5                             47
  CLUS_2                           17                             40
  CLUS_3                            7                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED       11     11      7
  DEL PEAK 30(20P12.1) WILD-TYPE     59     27     35
D45V8, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                           11                             59
  CLUS_2                           11                             27
  CLUS_3                            7                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED       10     12      7
  DEL PEAK 30(20P12.1) WILD-TYPE     59     24     38
D45V9, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                           10                             59
  CLUS_2                           12                             24
  CLUS_3                            7                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(20P12.1) MUTATED        2      9     12      6
  DEL PEAK 30(20P12.1) WILD-TYPE     35     24     26     36
D45V10, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            2                             35
  CLUS_2                            9                             24
  CLUS_3                           12                             26
  CLUS_4                            6                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 31(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XP21.1) MUTATED        4      9     15
  DEL PEAK 31(XP21.1) WILD-TYPE     44     35     43
D46V1, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           4                            44
  CLUS_2                           9                            35
  CLUS_3                          15                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XP21.1) MUTATED        5      6     17
  DEL PEAK 31(XP21.1) WILD-TYPE     51     43     28
D46V2, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           5                            51
  CLUS_2                           6                            43
  CLUS_3                          17                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(XP21.1) MUTATED        9      2     11      3
  DEL PEAK 31(XP21.1) WILD-TYPE     39     12     24     18
D46V3, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           9                            39
  CLUS_2                           2                            12
  CLUS_3                          11                            24
  CLUS_4                           3                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XP21.1) MUTATED        9      5     11
  DEL PEAK 31(XP21.1) WILD-TYPE     41     20     32
D46V4, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           9                            41
  CLUS_2                           5                            20
  CLUS_3                          11                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XP21.1) MUTATED       10      5     13
  DEL PEAK 31(XP21.1) WILD-TYPE     60     35     27
D46V5, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                          10                            60
  CLUS_2                           5                            35
  CLUS_3                          13                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(XP21.1) MUTATED        3      7      2      7      0      4
  DEL PEAK 31(XP21.1) WILD-TYPE     40     20     10     17      8     19
                               vv
clus                            CLUS_7
  DEL PEAK 31(XP21.1) MUTATED        5
  DEL PEAK 31(XP21.1) WILD-TYPE      8
D46V6, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           3                            40
  CLUS_2                           7                            20
  CLUS_3                           2                            10
  CLUS_4                           7                            17
  CLUS_5                           0                             8
  CLUS_6                           4                            19
  CLUS_7                           5                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XP21.1) MUTATED        6      9     13
  DEL PEAK 31(XP21.1) WILD-TYPE     46     48     28
D46V7, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           6                            46
  CLUS_2                           9                            48
  CLUS_3                          13                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XP21.1) MUTATED       10      5     13
  DEL PEAK 31(XP21.1) WILD-TYPE     60     33     29
D46V8, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                          10                            60
  CLUS_2                           5                            33
  CLUS_3                          13                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XP21.1) MUTATED       10      4     14
  DEL PEAK 31(XP21.1) WILD-TYPE     59     32     31
D46V9, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                          10                            59
  CLUS_2                           4                            32
  CLUS_3                          14                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(XP21.1) MUTATED        1      9      4     14
  DEL PEAK 31(XP21.1) WILD-TYPE     36     24     34     28
D46V10, multiclass
        clus
vv       DEL PEAK 31(XP21.1) MUTATED DEL PEAK 31(XP21.1) WILD-TYPE
  CLUS_1                           1                            36
  CLUS_2                           9                            24
  CLUS_3                           4                            34
  CLUS_4                          14                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 32(XQ27.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XQ27.3) MUTATED        2     11     17
  DEL PEAK 32(XQ27.3) WILD-TYPE     46     33     41
D47V1, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           2                            46
  CLUS_2                          11                            33
  CLUS_3                          17                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XQ27.3) MUTATED        5      8     17
  DEL PEAK 32(XQ27.3) WILD-TYPE     51     41     28
D47V2, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           5                            51
  CLUS_2                           8                            41
  CLUS_3                          17                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(XQ27.3) MUTATED       10      0     13      3
  DEL PEAK 32(XQ27.3) WILD-TYPE     38     14     22     18
D47V3, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                          10                            38
  CLUS_2                           0                            14
  CLUS_3                          13                            22
  CLUS_4                           3                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XQ27.3) MUTATED       10      5     11
  DEL PEAK 32(XQ27.3) WILD-TYPE     40     20     32
D47V4, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                          10                            40
  CLUS_2                           5                            20
  CLUS_3                          11                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XQ27.3) MUTATED       11      6     13
  DEL PEAK 32(XQ27.3) WILD-TYPE     59     34     27
D47V5, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                          11                            59
  CLUS_2                           6                            34
  CLUS_3                          13                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(XQ27.3) MUTATED        4      7      4      8      0      3
  DEL PEAK 32(XQ27.3) WILD-TYPE     39     20      8     16      8     20
                               vv
clus                            CLUS_7
  DEL PEAK 32(XQ27.3) MUTATED        4
  DEL PEAK 32(XQ27.3) WILD-TYPE      9
D47V6, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           4                            39
  CLUS_2                           7                            20
  CLUS_3                           4                             8
  CLUS_4                           8                            16
  CLUS_5                           0                             8
  CLUS_6                           3                            20
  CLUS_7                           4                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XQ27.3) MUTATED        8      7     15
  DEL PEAK 32(XQ27.3) WILD-TYPE     44     50     26
D47V7, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           8                            44
  CLUS_2                           7                            50
  CLUS_3                          15                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XQ27.3) MUTATED       11      4     15
  DEL PEAK 32(XQ27.3) WILD-TYPE     59     34     27
D47V8, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                          11                            59
  CLUS_2                           4                            34
  CLUS_3                          15                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(XQ27.3) MUTATED       11      5     14
  DEL PEAK 32(XQ27.3) WILD-TYPE     58     31     31
D47V9, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                          11                            58
  CLUS_2                           5                            31
  CLUS_3                          14                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(XQ27.3) MUTATED        4      7      5     14
  DEL PEAK 32(XQ27.3) WILD-TYPE     33     26     33     28
D47V10, multiclass
        clus
vv       DEL PEAK 32(XQ27.3) MUTATED DEL PEAK 32(XQ27.3) WILD-TYPE
  CLUS_1                           4                            33
  CLUS_2                           7                            26
  CLUS_3                           5                            33
  CLUS_4                          14                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
