This pipeline computes the correlation between significant copy number variation (cnv focal) genes and selected clinical features.
Testing the association between copy number variation 98 focal events and 17 clinical features across 499 patients, 173 significant findings detected with Q value < 0.25.
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amp_1p36.32 cnv correlated to 'RACE'.
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amp_1p32.3 cnv correlated to 'RADIATION_EXPOSURE'.
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amp_1q31.2 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', 'TUMOR_SIZE', and 'RACE'.
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amp_1q43 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', 'TUMOR_SIZE', and 'RACE'.
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amp_3p22.3 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', and 'NEOPLASM_DISEASESTAGE'.
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amp_3p14.1 cnv correlated to 'Time to Death'.
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amp_4p16.1 cnv correlated to 'Time to Death', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_4q22.1 cnv correlated to 'Time to Death'.
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amp_4q28.2 cnv correlated to 'Time to Death', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_4q31.21 cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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amp_4q32.3 cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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amp_5p14.3 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', and 'TUMOR_SIZE'.
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amp_5q21.1 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_5q21.1 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'TUMOR_SIZE'.
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amp_5q33.1 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_5q35.2 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', 'NUMBER_OF_LYMPH_NODES', and 'TUMOR_SIZE'.
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amp_6p22.3 cnv correlated to 'Time to Death'.
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amp_6p22.2 cnv correlated to 'Time to Death' and 'YEARS_TO_BIRTH'.
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amp_6p21.31 cnv correlated to 'Time to Death' and 'NEOPLASM_DISEASESTAGE'.
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amp_6p12.2 cnv correlated to 'Time to Death'.
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amp_7q11.21 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_7q21.11 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_7q31.1 cnv correlated to 'HISTOLOGICAL_TYPE' and 'NUMBER_OF_LYMPH_NODES'.
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amp_7q34 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_9q31.1 cnv correlated to 'TUMOR_SIZE'.
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amp_9q34.3 cnv correlated to 'HISTOLOGICAL_TYPE' and 'TUMOR_SIZE'.
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amp_10q24.2 cnv correlated to 'YEARS_TO_BIRTH' and 'HISTOLOGICAL_TYPE'.
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amp_12p11.1 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_12q21.31 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_12q23.1 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_13q34 cnv correlated to 'HISTOLOGICAL_TYPE'.
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amp_14q12 cnv correlated to 'NEOPLASM_DISEASESTAGE'.
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amp_14q32.31 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_18q22.3 cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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amp_19p13.3 cnv correlated to 'HISTOLOGICAL_TYPE'.
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amp_20p13 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_20q13.11 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_20q13.2 cnv correlated to 'YEARS_TO_BIRTH', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_20q13.2 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_22q11.21 cnv correlated to 'COMPLETENESS_OF_RESECTION'.
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amp_xp22.12 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', and 'COMPLETENESS_OF_RESECTION'.
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amp_xp11.4 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', and 'EXTRATHYROIDAL_EXTENSION'.
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amp_xp11.22 cnv correlated to 'EXTRATHYROIDAL_EXTENSION'.
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amp_xp11.22 cnv correlated to 'YEARS_TO_BIRTH', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_xq21.2 cnv correlated to 'EXTRATHYROIDAL_EXTENSION'.
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amp_xq22.3 cnv correlated to 'GENDER' and 'EXTRATHYROIDAL_EXTENSION'.
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amp_xq23 cnv correlated to 'EXTRATHYROIDAL_EXTENSION'.
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amp_xq28 cnv correlated to 'YEARS_TO_BIRTH' and 'EXTRATHYROIDAL_EXTENSION'.
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del_2p23.1 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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del_2q22.1 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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del_2q37.3 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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del_6q22.31 cnv correlated to 'Time to Death' and 'TUMOR_SIZE'.
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del_8q24.22 cnv correlated to 'GENDER'.
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del_9p21.3 cnv correlated to 'YEARS_TO_BIRTH' and 'NEOPLASM_DISEASESTAGE'.
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del_9q22.33 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', and 'TUMOR_SIZE'.
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del_10p12.31 cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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del_10q23.31 cnv correlated to 'PATHOLOGY_N_STAGE' and 'TUMOR_SIZE'.
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del_11p15.1 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'GENDER', and 'TUMOR_SIZE'.
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del_13q12.13 cnv correlated to 'YEARS_TO_BIRTH' and 'RADIATION_EXPOSURE'.
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del_13q22.1 cnv correlated to 'PATHOLOGY_N_STAGE', 'RADIATION_EXPOSURE', and 'NUMBER_OF_LYMPH_NODES'.
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del_16q23.3 cnv correlated to 'NEOPLASM_DISEASESTAGE' and 'PATHOLOGY_T_STAGE'.
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del_17p13.1 cnv correlated to 'RADIATIONS_RADIATION_REGIMENINDICATION' and 'TUMOR_SIZE'.
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del_19p13.2 cnv correlated to 'TUMOR_SIZE'.
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del_19p13.12 cnv correlated to 'TUMOR_SIZE'.
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del_21q21.1 cnv correlated to 'NEOPLASM_DISEASESTAGE'.
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del_xq23 cnv correlated to 'NEOPLASM_DISEASESTAGE'.
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del_xq22.3 cnv correlated to 'NEOPLASM_DISEASESTAGE'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 98 focal events and 17 clinical features. Shown in the table are P values (Q values). Thresholded by Q value < 0.25, 173 significant findings detected.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
NEOPLASM DISEASESTAGE |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
GENDER |
HISTOLOGICAL TYPE |
RADIATIONS RADIATION REGIMENINDICATION |
RADIATION EXPOSURE |
EXTRATHYROIDAL EXTENSION |
COMPLETENESS OF RESECTION |
NUMBER OF LYMPH NODES |
MULTIFOCALITY |
TUMOR SIZE |
RACE | ETHNICITY | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | |
amp 1q31 2 | 29 (6%) | 470 |
0.161 (0.626) |
4.67e-05 (0.00823) |
2e-05 (0.00476) |
1e-05 (0.00278) |
0.00109 (0.0801) |
1 (1.00) |
0.665 (1.00) |
0.00643 (0.154) |
0.572 (1.00) |
1 (1.00) |
1e-05 (0.00278) |
0.046 (0.336) |
0.0305 (0.269) |
0.124 (0.529) |
0.00349 (0.115) |
0.00357 (0.115) |
0.0285 (0.259) |
amp 1q43 | 29 (6%) | 470 |
0.0345 (0.281) |
2.47e-06 (0.00206) |
1e-05 (0.00278) |
1e-05 (0.00278) |
0.00277 (0.113) |
0.389 (0.945) |
1 (1.00) |
0.00649 (0.154) |
0.572 (1.00) |
1 (1.00) |
4e-05 (0.00823) |
0.045 (0.33) |
0.0506 (0.343) |
0.0535 (0.353) |
0.00604 (0.154) |
0.00336 (0.115) |
0.0907 (0.462) |
amp 5q35 2 | 20 (4%) | 479 |
0.075 (0.429) |
0.0027 (0.113) |
0.00296 (0.114) |
0.118 (0.529) |
0.0112 (0.161) |
1 (1.00) |
0.196 (0.687) |
0.0135 (0.178) |
0.104 (0.5) |
1 (1.00) |
0.0117 (0.166) |
0.507 (1.00) |
0.00615 (0.154) |
1 (1.00) |
0.00806 (0.161) |
0.44 (1.00) |
0.615 (1.00) |
amp 7q21 11 | 21 (4%) | 478 |
0.493 (1.00) |
0.00866 (0.161) |
0.0249 (0.243) |
0.471 (1.00) |
0.0112 (0.161) |
1 (1.00) |
0.804 (1.00) |
0.0217 (0.223) |
1 (1.00) |
1 (1.00) |
0.0141 (0.183) |
0.508 (1.00) |
0.0011 (0.0801) |
0.509 (1.00) |
0.601 (1.00) |
0.299 (0.835) |
0.623 (1.00) |
amp 5q21 1 | 20 (4%) | 479 |
0.0905 (0.462) |
0.00185 (0.105) |
0.0009 (0.0789) |
0.288 (0.827) |
0.00196 (0.105) |
1 (1.00) |
0.196 (0.687) |
0.05 (0.341) |
0.44 (1.00) |
1 (1.00) |
0.0281 (0.257) |
0.511 (1.00) |
0.00196 (0.105) |
0.652 (1.00) |
0.0128 (0.171) |
0.441 (1.00) |
1 (1.00) |
del 11p15 1 | 7 (1%) | 492 |
0.00266 (0.113) |
0.000665 (0.0652) |
0.00582 (0.154) |
0.235 (0.751) |
0.285 (0.825) |
1 (1.00) |
0.0164 (0.193) |
0.82 (1.00) |
0.182 (0.654) |
1 (1.00) |
0.558 (1.00) |
0.53 (1.00) |
0.208 (0.707) |
0.708 (1.00) |
0.00797 (0.161) |
0.477 (1.00) |
1 (1.00) |
amp 5q21 1 | 23 (5%) | 476 |
0.104 (0.5) |
0.0208 (0.22) |
0.009 (0.161) |
0.712 (1.00) |
0.0101 (0.161) |
1 (1.00) |
0.225 (0.737) |
0.331 (0.864) |
0.488 (1.00) |
1 (1.00) |
0.0485 (0.339) |
0.411 (0.958) |
0.00817 (0.161) |
0.834 (1.00) |
0.177 (0.654) |
0.226 (0.739) |
1 (1.00) |
amp 5q33 1 | 21 (4%) | 478 |
0.0384 (0.3) |
0.0124 (0.169) |
0.00473 (0.136) |
0.552 (1.00) |
0.0112 (0.161) |
1 (1.00) |
0.218 (0.723) |
0.0891 (0.462) |
0.457 (1.00) |
1 (1.00) |
0.0281 (0.257) |
0.394 (0.945) |
0.0102 (0.161) |
1 (1.00) |
0.0889 (0.462) |
1 (1.00) |
0.623 (1.00) |
amp 7q11 21 | 20 (4%) | 479 |
0.454 (1.00) |
0.0901 (0.462) |
0.0186 (0.207) |
0.516 (1.00) |
0.00358 (0.115) |
1 (1.00) |
0.797 (1.00) |
0.0494 (0.341) |
1 (1.00) |
1 (1.00) |
0.0041 (0.124) |
0.482 (1.00) |
0.00196 (0.105) |
0.817 (1.00) |
0.367 (0.929) |
1 (1.00) |
0.615 (1.00) |
amp 7q34 | 22 (4%) | 477 |
0.53 (1.00) |
0.0562 (0.361) |
0.0342 (0.28) |
0.696 (1.00) |
0.0112 (0.161) |
1 (1.00) |
0.808 (1.00) |
0.0086 (0.161) |
1 (1.00) |
1 (1.00) |
0.0122 (0.169) |
0.328 (0.864) |
0.00567 (0.152) |
0.668 (1.00) |
0.577 (1.00) |
0.297 (0.835) |
1 (1.00) |
amp 14q32 31 | 13 (3%) | 486 |
0.536 (1.00) |
0.0437 (0.328) |
0.00314 (0.115) |
0.309 (0.85) |
0.0108 (0.161) |
1 (1.00) |
0.529 (1.00) |
0.0212 (0.222) |
1 (1.00) |
1 (1.00) |
0.862 (1.00) |
0.558 (1.00) |
0.0175 (0.2) |
0.099 (0.483) |
0.234 (0.751) |
0.777 (1.00) |
1 (1.00) |
amp 20p13 | 14 (3%) | 485 |
0.507 (1.00) |
0.148 (0.593) |
0.0151 (0.186) |
0.504 (1.00) |
0.0201 (0.215) |
1 (1.00) |
1 (1.00) |
0.0153 (0.188) |
1 (1.00) |
1 (1.00) |
0.0343 (0.28) |
0.462 (1.00) |
0.00383 (0.12) |
1 (1.00) |
0.0397 (0.309) |
0.781 (1.00) |
0.509 (1.00) |
amp 20q13 11 | 14 (3%) | 485 |
0.469 (1.00) |
0.259 (0.782) |
0.0275 (0.256) |
0.482 (1.00) |
0.0108 (0.161) |
1 (1.00) |
1 (1.00) |
0.00348 (0.115) |
1 (1.00) |
1 (1.00) |
0.0102 (0.161) |
1 (1.00) |
0.00213 (0.108) |
1 (1.00) |
0.129 (0.544) |
0.757 (1.00) |
0.174 (0.653) |
amp 20q13 2 | 14 (3%) | 485 |
0.334 (0.864) |
0.0215 (0.222) |
0.0271 (0.255) |
0.711 (1.00) |
0.0622 (0.377) |
1 (1.00) |
0.216 (0.723) |
0.00353 (0.115) |
1 (1.00) |
1 (1.00) |
0.00956 (0.161) |
1 (1.00) |
0.0224 (0.229) |
0.792 (1.00) |
0.0803 (0.441) |
0.778 (1.00) |
1 (1.00) |
amp 3p22 3 | 4 (1%) | 495 |
0.00498 (0.138) |
0.015 (0.186) |
0.0108 (0.161) |
0.109 (0.515) |
0.623 (1.00) |
0.0315 (0.271) |
1 (1.00) |
0.455 (1.00) |
1 (1.00) |
1 (1.00) |
0.646 (1.00) |
0.048 (0.339) |
0.0788 (0.439) |
0.628 (1.00) |
0.547 (1.00) |
1 (1.00) |
|
amp 4p16 1 | 7 (1%) | 492 |
0.017 (0.195) |
0.0448 (0.33) |
0.2 (0.689) |
0.739 (1.00) |
0.00733 (0.161) |
1 (1.00) |
0.39 (0.945) |
0.386 (0.945) |
0.182 (0.654) |
1 (1.00) |
1 (1.00) |
0.532 (1.00) |
0.0125 (0.169) |
0.256 (0.778) |
0.244 (0.762) |
0.588 (1.00) |
1 (1.00) |
amp 4q28 2 | 6 (1%) | 493 |
0.0146 (0.186) |
0.058 (0.371) |
0.334 (0.864) |
0.538 (1.00) |
0.0149 (0.186) |
1 (1.00) |
0.66 (1.00) |
0.249 (0.768) |
0.158 (0.619) |
1 (1.00) |
1 (1.00) |
0.464 (1.00) |
0.0228 (0.229) |
0.0991 (0.483) |
0.244 (0.762) |
0.587 (1.00) |
1 (1.00) |
amp 5p14 3 | 23 (5%) | 476 |
0.0949 (0.473) |
4.94e-05 (0.00823) |
0.00184 (0.105) |
0.156 (0.616) |
0.494 (1.00) |
1 (1.00) |
0.636 (1.00) |
0.33 (0.864) |
0.488 (1.00) |
1 (1.00) |
0.0331 (0.278) |
0.0889 (0.462) |
0.138 (0.564) |
0.529 (1.00) |
0.0181 (0.204) |
0.302 (0.835) |
0.646 (1.00) |
amp 12p11 1 | 16 (3%) | 483 |
0.45 (1.00) |
0.112 (0.524) |
0.134 (0.551) |
0.838 (1.00) |
0.000862 (0.0789) |
1 (1.00) |
0.577 (1.00) |
0.00153 (0.102) |
1 (1.00) |
1 (1.00) |
0.407 (0.953) |
0.228 (0.739) |
0.00213 (0.108) |
1 (1.00) |
0.835 (1.00) |
0.561 (1.00) |
1 (1.00) |
amp 12q21 31 | 17 (3%) | 482 |
0.423 (0.98) |
0.17 (0.653) |
0.0684 (0.407) |
0.607 (1.00) |
0.000204 (0.0309) |
1 (1.00) |
0.578 (1.00) |
0.016 (0.191) |
1 (1.00) |
1 (1.00) |
0.117 (0.529) |
0.599 (1.00) |
0.000661 (0.0652) |
0.806 (1.00) |
0.731 (1.00) |
0.489 (1.00) |
1 (1.00) |
amp 12q23 1 | 17 (3%) | 482 |
0.516 (1.00) |
0.0818 (0.443) |
0.0534 (0.353) |
0.605 (1.00) |
0.00301 (0.114) |
1 (1.00) |
0.578 (1.00) |
0.0165 (0.193) |
1 (1.00) |
1 (1.00) |
0.113 (0.524) |
0.599 (1.00) |
0.00618 (0.154) |
0.625 (1.00) |
0.932 (1.00) |
0.489 (1.00) |
1 (1.00) |
amp 20q13 2 | 13 (3%) | 486 |
0.323 (0.864) |
0.0552 (0.361) |
0.00832 (0.161) |
0.483 (1.00) |
0.105 (0.503) |
1 (1.00) |
0.753 (1.00) |
0.00402 (0.124) |
1 (1.00) |
1 (1.00) |
0.0369 (0.294) |
0.65 (1.00) |
0.0241 (0.237) |
0.586 (1.00) |
0.0499 (0.341) |
0.547 (1.00) |
1 (1.00) |
amp xp22 12 | 10 (2%) | 489 |
0.0906 (0.462) |
0.0126 (0.169) |
0.00267 (0.113) |
0.299 (0.835) |
0.105 (0.503) |
1 (1.00) |
1 (1.00) |
0.463 (1.00) |
1 (1.00) |
0.302 (0.835) |
0.0315 (0.271) |
0.017 (0.195) |
0.0513 (0.343) |
0.524 (1.00) |
0.219 (0.723) |
0.479 (1.00) |
1 (1.00) |
amp xp11 4 | 9 (2%) | 490 |
0.0893 (0.462) |
0.00487 (0.138) |
0.00836 (0.161) |
0.352 (0.896) |
0.175 (0.653) |
1 (1.00) |
1 (1.00) |
0.334 (0.864) |
1 (1.00) |
0.302 (0.835) |
0.019 (0.208) |
0.0842 (0.452) |
0.0703 (0.413) |
0.739 (1.00) |
0.219 (0.723) |
1 (1.00) |
1 (1.00) |
amp xp11 22 | 8 (2%) | 491 |
0.0803 (0.441) |
0.00831 (0.161) |
0.0316 (0.271) |
0.565 (1.00) |
0.122 (0.529) |
1 (1.00) |
0.688 (1.00) |
0.219 (0.723) |
1 (1.00) |
1 (1.00) |
0.018 (0.204) |
0.0717 (0.416) |
0.0228 (0.229) |
0.48 (1.00) |
0.403 (0.948) |
1 (1.00) |
1 (1.00) |
del 2p23 1 | 12 (2%) | 487 |
0.673 (1.00) |
0.698 (1.00) |
0.0555 (0.361) |
0.867 (1.00) |
0.0108 (0.161) |
1 (1.00) |
0.529 (1.00) |
0.00338 (0.115) |
1 (1.00) |
1 (1.00) |
0.0767 (0.438) |
0.453 (1.00) |
0.0113 (0.161) |
0.779 (1.00) |
0.954 (1.00) |
1 (1.00) |
1 (1.00) |
del 2q22 1 | 10 (2%) | 489 |
0.587 (1.00) |
0.257 (0.779) |
0.0302 (0.268) |
0.796 (1.00) |
0.00733 (0.161) |
1 (1.00) |
0.731 (1.00) |
0.00533 (0.146) |
1 (1.00) |
1 (1.00) |
0.147 (0.592) |
0.455 (1.00) |
0.00691 (0.16) |
1 (1.00) |
0.364 (0.924) |
1 (1.00) |
1 (1.00) |
del 2q37 3 | 13 (3%) | 486 |
0.311 (0.853) |
0.133 (0.551) |
0.0157 (0.19) |
0.447 (1.00) |
0.0201 (0.215) |
1 (1.00) |
0.346 (0.885) |
0.0442 (0.33) |
1 (1.00) |
0.382 (0.945) |
0.24 (0.756) |
0.237 (0.751) |
0.0161 (0.192) |
0.779 (1.00) |
0.056 (0.361) |
0.759 (1.00) |
1 (1.00) |
del 9q22 33 | 27 (5%) | 472 |
0.0359 (0.288) |
0.000578 (0.0642) |
0.0003 (0.0416) |
0.12 (0.529) |
0.392 (0.945) |
0.301 (0.835) |
0.501 (1.00) |
1 (1.00) |
0.546 (1.00) |
1 (1.00) |
0.0913 (0.462) |
0.878 (1.00) |
0.965 (1.00) |
0.692 (1.00) |
0.0209 (0.22) |
0.83 (1.00) |
1 (1.00) |
del 13q22 1 | 19 (4%) | 480 |
0.546 (1.00) |
0.0804 (0.441) |
0.66 (1.00) |
0.983 (1.00) |
0.0112 (0.161) |
1 (1.00) |
0.299 (0.835) |
0.629 (1.00) |
0.0952 (0.473) |
0.00273 (0.113) |
0.478 (1.00) |
0.747 (1.00) |
0.0252 (0.243) |
0.641 (1.00) |
0.394 (0.945) |
0.598 (1.00) |
0.383 (0.945) |
amp 4q31 21 | 10 (2%) | 489 |
0.294 (0.835) |
0.0561 (0.361) |
0.158 (0.619) |
0.501 (1.00) |
0.0201 (0.215) |
1 (1.00) |
1 (1.00) |
0.519 (1.00) |
0.25 (0.768) |
1 (1.00) |
0.653 (1.00) |
0.82 (1.00) |
0.0063 (0.154) |
0.198 (0.687) |
0.191 (0.678) |
0.0376 (0.295) |
1 (1.00) |
amp 4q32 3 | 7 (1%) | 492 |
0.152 (0.605) |
0.115 (0.529) |
0.201 (0.693) |
0.3 (0.835) |
0.00733 (0.161) |
1 (1.00) |
1 (1.00) |
0.131 (0.545) |
0.182 (0.654) |
1 (1.00) |
1 (1.00) |
0.0494 (0.341) |
0.00691 (0.16) |
0.708 (1.00) |
0.275 (0.816) |
1 (1.00) |
1 (1.00) |
amp 6p22 2 | 4 (1%) | 495 |
1.46e-06 (0.00206) |
0.00451 (0.132) |
0.0401 (0.311) |
0.398 (0.945) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.108 (0.511) |
1 (1.00) |
0.644 (1.00) |
1 (1.00) |
0.47 (1.00) |
0.628 (1.00) |
0.302 (0.835) |
1 (1.00) |
1 (1.00) |
amp 6p21 31 | 3 (1%) | 496 |
0.00427 (0.127) |
0.0474 (0.339) |
0.0121 (0.169) |
0.155 (0.613) |
0.623 (1.00) |
0.0621 (0.377) |
1 (1.00) |
1 (1.00) |
0.082 (0.443) |
1 (1.00) |
0.458 (1.00) |
0.468 (1.00) |
1 (1.00) |
0.533 (1.00) |
0.483 (1.00) |
1 (1.00) |
|
amp 7q31 1 | 22 (4%) | 477 |
0.504 (1.00) |
0.0694 (0.409) |
0.033 (0.278) |
0.696 (1.00) |
0.0449 (0.33) |
1 (1.00) |
1 (1.00) |
0.00849 (0.161) |
1 (1.00) |
1 (1.00) |
0.0278 (0.257) |
0.174 (0.653) |
0.0104 (0.161) |
1 (1.00) |
0.677 (1.00) |
1 (1.00) |
0.608 (1.00) |
amp 9q34 3 | 7 (1%) | 492 |
0.595 (1.00) |
0.233 (0.749) |
0.236 (0.751) |
0.422 (0.98) |
0.285 (0.825) |
1 (1.00) |
0.39 (0.945) |
0.0239 (0.237) |
0.182 (0.654) |
1 (1.00) |
0.26 (0.783) |
1 (1.00) |
0.197 (0.687) |
0.708 (1.00) |
0.00926 (0.161) |
1 (1.00) |
1 (1.00) |
amp 10q24 2 | 3 (1%) | 496 |
0.731 (1.00) |
0.00951 (0.161) |
1 (1.00) |
0.389 (0.945) |
0.248 (0.768) |
0.568 (1.00) |
0.0213 (0.222) |
1 (1.00) |
1 (1.00) |
0.611 (1.00) |
0.236 (0.751) |
1 (1.00) |
1 (1.00) |
||||
amp 18q22 3 | 8 (2%) | 491 |
0.591 (1.00) |
0.975 (1.00) |
1 (1.00) |
0.511 (1.00) |
0.00733 (0.161) |
1 (1.00) |
1 (1.00) |
0.514 (1.00) |
1 (1.00) |
1 (1.00) |
0.758 (1.00) |
0.528 (1.00) |
0.0125 (0.169) |
0.298 (0.835) |
0.441 (1.00) |
0.758 (1.00) |
1 (1.00) |
amp xq22 3 | 15 (3%) | 484 |
0.173 (0.653) |
0.366 (0.927) |
0.185 (0.661) |
0.573 (1.00) |
0.293 (0.835) |
1 (1.00) |
0.0148 (0.186) |
0.525 (1.00) |
1 (1.00) |
1 (1.00) |
0.00977 (0.161) |
0.892 (1.00) |
0.311 (0.852) |
0.302 (0.835) |
0.749 (1.00) |
0.665 (1.00) |
1 (1.00) |
amp xq28 | 10 (2%) | 489 |
0.247 (0.768) |
0.0199 (0.215) |
0.06 (0.374) |
0.16 (0.626) |
0.338 (0.869) |
1 (1.00) |
0.0693 (0.409) |
0.13 (0.544) |
0.25 (0.768) |
1 (1.00) |
0.00973 (0.161) |
0.35 (0.895) |
0.212 (0.717) |
0.524 (1.00) |
0.39 (0.945) |
1 (1.00) |
1 (1.00) |
del 6q22 31 | 7 (1%) | 492 |
0.00192 (0.105) |
0.08 (0.441) |
0.197 (0.687) |
0.794 (1.00) |
0.216 (0.723) |
0.39 (0.945) |
0.82 (1.00) |
0.182 (0.654) |
0.213 (0.717) |
0.398 (0.946) |
0.761 (1.00) |
0.177 (0.654) |
0.46 (1.00) |
0.00963 (0.161) |
1 (1.00) |
1 (1.00) |
|
del 9p21 3 | 20 (4%) | 479 |
0.0264 (0.252) |
0.00912 (0.161) |
0.00033 (0.0423) |
0.179 (0.654) |
0.811 (1.00) |
0.202 (0.696) |
0.439 (1.00) |
0.679 (1.00) |
1 (1.00) |
1 (1.00) |
0.0601 (0.374) |
0.482 (1.00) |
0.124 (0.529) |
0.172 (0.653) |
0.113 (0.524) |
0.889 (1.00) |
0.379 (0.945) |
del 10p12 31 | 7 (1%) | 492 |
0.676 (1.00) |
0.58 (1.00) |
0.386 (0.945) |
0.739 (1.00) |
0.0149 (0.186) |
1 (1.00) |
0.39 (0.945) |
0.82 (1.00) |
1 (1.00) |
1 (1.00) |
0.759 (1.00) |
1 (1.00) |
0.0228 (0.229) |
0.708 (1.00) |
0.0843 (0.452) |
0.734 (1.00) |
1 (1.00) |
del 10q23 31 | 12 (2%) | 487 |
0.55 (1.00) |
0.198 (0.687) |
0.0525 (0.35) |
0.764 (1.00) |
0.0108 (0.161) |
1 (1.00) |
0.318 (0.86) |
0.335 (0.864) |
1 (1.00) |
1 (1.00) |
0.709 (1.00) |
0.535 (1.00) |
0.0275 (0.256) |
1 (1.00) |
0.00253 (0.113) |
1 (1.00) |
1 (1.00) |
del 13q12 13 | 18 (4%) | 481 |
0.501 (1.00) |
0.00641 (0.154) |
0.289 (0.827) |
1 (1.00) |
0.0716 (0.416) |
1 (1.00) |
0.276 (0.818) |
0.603 (1.00) |
0.406 (0.953) |
0.00273 (0.113) |
0.465 (1.00) |
1 (1.00) |
0.209 (0.71) |
0.812 (1.00) |
0.601 (1.00) |
1 (1.00) |
0.623 (1.00) |
del 16q23 3 | 6 (1%) | 493 |
0.0876 (0.459) |
0.0493 (0.341) |
0.00222 (0.109) |
0.0156 (0.189) |
0.685 (1.00) |
0.121 (0.529) |
1 (1.00) |
0.165 (0.639) |
1 (1.00) |
0.213 (0.717) |
0.0634 (0.381) |
0.0732 (0.424) |
0.847 (1.00) |
1 (1.00) |
0.431 (0.992) |
0.476 (1.00) |
1 (1.00) |
del 17p13 1 | 8 (2%) | 491 |
0.559 (1.00) |
0.885 (1.00) |
0.157 (0.618) |
0.0339 (0.28) |
0.503 (1.00) |
1 (1.00) |
1 (1.00) |
0.222 (0.729) |
0.0186 (0.207) |
0.273 (0.815) |
0.0583 (0.372) |
0.344 (0.882) |
0.898 (1.00) |
0.731 (1.00) |
0.0149 (0.186) |
0.588 (1.00) |
1 (1.00) |
amp 1p36 32 | 5 (1%) | 494 |
0.812 (1.00) |
0.325 (0.864) |
0.17 (0.653) |
0.232 (0.749) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0914 (0.462) |
1 (1.00) |
0.18 (0.654) |
0.3 (0.835) |
0.641 (1.00) |
0.91 (1.00) |
1 (1.00) |
0.0838 (0.452) |
0.00933 (0.161) |
1 (1.00) |
amp 1p32 3 | 5 (1%) | 494 |
0.903 (1.00) |
0.872 (1.00) |
0.233 (0.749) |
0.893 (1.00) |
1 (1.00) |
0.613 (1.00) |
0.0744 (0.427) |
1 (1.00) |
0.00814 (0.161) |
0.694 (1.00) |
0.393 (0.945) |
0.79 (1.00) |
0.665 (1.00) |
0.241 (0.76) |
1 (1.00) |
1 (1.00) |
|
amp 3p14 1 | 5 (1%) | 494 |
0.0106 (0.161) |
0.459 (1.00) |
0.0713 (0.416) |
0.285 (0.825) |
1 (1.00) |
0.0918 (0.462) |
1 (1.00) |
0.561 (1.00) |
1 (1.00) |
0.18 (0.654) |
1 (1.00) |
0.102 (0.496) |
0.574 (1.00) |
1 (1.00) |
0.659 (1.00) |
0.483 (1.00) |
1 (1.00) |
amp 4q22 1 | 7 (1%) | 492 |
0.0239 (0.237) |
0.0411 (0.317) |
0.0462 (0.336) |
0.574 (1.00) |
0.0679 (0.405) |
1 (1.00) |
0.681 (1.00) |
0.388 (0.945) |
0.182 (0.654) |
1 (1.00) |
1 (1.00) |
0.401 (0.946) |
0.029 (0.261) |
0.256 (0.778) |
0.772 (1.00) |
1 (1.00) |
1 (1.00) |
amp 6p22 3 | 3 (1%) | 496 |
0.000492 (0.0585) |
0.275 (0.817) |
0.333 (0.864) |
1 (1.00) |
0.123 (0.529) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.082 (0.443) |
1 (1.00) |
0.607 (1.00) |
1 (1.00) |
0.253 (0.773) |
0.481 (1.00) |
1 (1.00) |
||
amp 6p12 2 | 3 (1%) | 496 |
0.00111 (0.0801) |
0.238 (0.751) |
0.332 (0.864) |
0.698 (1.00) |
0.623 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.082 (0.443) |
1 (1.00) |
0.61 (1.00) |
1 (1.00) |
0.332 (0.864) |
0.253 (0.773) |
0.533 (1.00) |
1 (1.00) |
1 (1.00) |
amp 9q31 1 | 6 (1%) | 493 |
0.113 (0.526) |
0.0464 (0.336) |
0.099 (0.483) |
0.314 (0.856) |
0.449 (1.00) |
1 (1.00) |
0.66 (1.00) |
0.248 (0.768) |
1 (1.00) |
1 (1.00) |
0.748 (1.00) |
1 (1.00) |
0.516 (1.00) |
1 (1.00) |
0.0113 (0.161) |
1 (1.00) |
1 (1.00) |
amp 13q34 | 7 (1%) | 492 |
0.697 (1.00) |
0.23 (0.744) |
0.171 (0.653) |
0.927 (1.00) |
0.122 (0.529) |
1 (1.00) |
1 (1.00) |
0.0104 (0.161) |
1 (1.00) |
1 (1.00) |
0.749 (1.00) |
1 (1.00) |
0.0775 (0.439) |
0.708 (1.00) |
0.633 (1.00) |
1 (1.00) |
1 (1.00) |
amp 14q12 | 13 (3%) | 486 |
0.479 (1.00) |
0.0353 (0.286) |
0.0252 (0.243) |
0.627 (1.00) |
0.0622 (0.377) |
1 (1.00) |
0.529 (1.00) |
0.122 (0.529) |
1 (1.00) |
1 (1.00) |
0.863 (1.00) |
0.558 (1.00) |
0.15 (0.596) |
0.274 (0.816) |
0.309 (0.85) |
0.403 (0.948) |
1 (1.00) |
amp 19p13 3 | 8 (2%) | 491 |
0.681 (1.00) |
0.124 (0.529) |
0.334 (0.864) |
0.377 (0.941) |
0.0679 (0.405) |
1 (1.00) |
0.445 (1.00) |
0.00769 (0.161) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.588 (1.00) |
0.0616 (0.377) |
0.48 (1.00) |
0.0941 (0.471) |
0.236 (0.751) |
1 (1.00) |
amp 22q11 21 | 7 (1%) | 492 |
0.852 (1.00) |
0.807 (1.00) |
0.226 (0.739) |
0.614 (1.00) |
0.724 (1.00) |
1 (1.00) |
0.198 (0.687) |
0.386 (0.945) |
1 (1.00) |
1 (1.00) |
0.749 (1.00) |
0.0137 (0.179) |
0.693 (1.00) |
1 (1.00) |
0.206 (0.704) |
0.321 (0.864) |
0.398 (0.945) |
amp xp11 22 | 8 (2%) | 491 |
0.0803 (0.441) |
0.0484 (0.339) |
0.0322 (0.275) |
0.401 (0.946) |
0.285 (0.825) |
1 (1.00) |
0.688 (1.00) |
0.219 (0.723) |
1 (1.00) |
0.273 (0.815) |
0.0252 (0.243) |
0.243 (0.762) |
0.118 (0.529) |
0.48 (1.00) |
0.185 (0.661) |
0.67 (1.00) |
1 (1.00) |
amp xq21 2 | 9 (2%) | 490 |
0.13 (0.544) |
0.0631 (0.381) |
0.0355 (0.286) |
0.162 (0.628) |
0.503 (1.00) |
1 (1.00) |
0.456 (1.00) |
0.335 (0.864) |
1 (1.00) |
1 (1.00) |
0.00949 (0.161) |
0.116 (0.529) |
0.396 (0.945) |
0.739 (1.00) |
0.18 (0.654) |
1 (1.00) |
1 (1.00) |
amp xq23 | 9 (2%) | 490 |
0.0986 (0.483) |
0.253 (0.773) |
0.0512 (0.343) |
0.611 (1.00) |
0.503 (1.00) |
1 (1.00) |
0.456 (1.00) |
0.334 (0.864) |
1 (1.00) |
1 (1.00) |
0.0189 (0.208) |
0.244 (0.762) |
0.195 (0.687) |
0.313 (0.854) |
0.16 (0.626) |
1 (1.00) |
1 (1.00) |
del 8q24 22 | 7 (1%) | 492 |
0.761 (1.00) |
0.4 (0.946) |
0.121 (0.529) |
0.797 (1.00) |
0.0302 (0.268) |
1 (1.00) |
0.0164 (0.193) |
0.13 (0.544) |
1 (1.00) |
1 (1.00) |
0.759 (1.00) |
0.53 (1.00) |
0.0421 (0.317) |
1 (1.00) |
0.28 (0.821) |
1 (1.00) |
1 (1.00) |
del 19p13 2 | 7 (1%) | 492 |
0.186 (0.664) |
0.162 (0.628) |
0.529 (1.00) |
1 (1.00) |
0.623 (1.00) |
1 (1.00) |
0.39 (0.945) |
1 (1.00) |
1 (1.00) |
0.0266 (0.252) |
1 (1.00) |
0.191 (0.678) |
0.46 (1.00) |
0.0029 (0.114) |
0.759 (1.00) |
1 (1.00) |
|
del 19p13 12 | 8 (2%) | 491 |
0.148 (0.592) |
0.256 (0.778) |
0.272 (0.814) |
0.881 (1.00) |
0.372 (0.931) |
1 (1.00) |
0.445 (1.00) |
1 (1.00) |
1 (1.00) |
0.0266 (0.252) |
0.602 (1.00) |
0.284 (0.825) |
1 (1.00) |
0.00805 (0.161) |
0.14 (0.57) |
1 (1.00) |
|
del 21q21 1 | 9 (2%) | 490 |
0.776 (1.00) |
0.103 (0.497) |
0.00792 (0.161) |
0.265 (0.796) |
0.751 (1.00) |
1 (1.00) |
0.706 (1.00) |
0.653 (1.00) |
1 (1.00) |
1 (1.00) |
0.623 (1.00) |
0.407 (0.953) |
0.721 (1.00) |
0.313 (0.854) |
0.479 (1.00) |
0.301 (0.835) |
1 (1.00) |
del xq23 | 4 (1%) | 495 |
0.779 (1.00) |
0.218 (0.723) |
0.00096 (0.08) |
0.0479 (0.339) |
0.0611 (0.376) |
0.0598 (0.374) |
1 (1.00) |
1 (1.00) |
0.112 (0.524) |
0.644 (1.00) |
0.317 (0.86) |
0.0421 (0.317) |
1 (1.00) |
0.667 (1.00) |
1 (1.00) |
||
del xq22 3 | 4 (1%) | 495 |
0.779 (1.00) |
0.218 (0.723) |
0.00118 (0.0819) |
0.0481 (0.339) |
0.0611 (0.376) |
0.0598 (0.374) |
1 (1.00) |
1 (1.00) |
0.112 (0.524) |
0.645 (1.00) |
0.317 (0.86) |
0.0421 (0.317) |
1 (1.00) |
0.667 (1.00) |
1 (1.00) |
||
amp 1p31 1 | 5 (1%) | 494 |
0.823 (1.00) |
0.608 (1.00) |
0.116 (0.529) |
0.707 (1.00) |
0.372 (0.931) |
1 (1.00) |
0.121 (0.529) |
0.0476 (0.339) |
1 (1.00) |
0.147 (0.592) |
1 (1.00) |
0.392 (0.945) |
0.823 (1.00) |
0.665 (1.00) |
0.409 (0.955) |
1 (1.00) |
1 (1.00) |
amp 2p16 1 | 3 (1%) | 496 |
0.692 (1.00) |
0.808 (1.00) |
0.504 (1.00) |
0.58 (1.00) |
1 (1.00) |
1 (1.00) |
0.175 (0.653) |
0.0854 (0.454) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.237 (0.751) |
1 (1.00) |
0.504 (1.00) |
0.485 (1.00) |
1 (1.00) |
|
amp 2q37 2 | 3 (1%) | 496 |
0.893 (1.00) |
0.536 (1.00) |
1 (1.00) |
0.391 (0.945) |
0.623 (1.00) |
1 (1.00) |
1 (1.00) |
0.143 (0.58) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
||||
amp 6p21 2 | 4 (1%) | 495 |
0.0507 (0.343) |
0.877 (1.00) |
0.645 (1.00) |
0.636 (1.00) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
0.712 (1.00) |
0.108 (0.511) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.127 (0.538) |
0.628 (1.00) |
0.207 (0.706) |
0.584 (1.00) |
0.333 (0.864) |
amp 6q12 | 3 (1%) | 496 |
0.824 (1.00) |
0.258 (0.781) |
0.606 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.568 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.763 (1.00) |
0.253 (0.773) |
1 (1.00) |
1 (1.00) |
|
amp 6q27 | 4 (1%) | 495 |
0.587 (1.00) |
0.393 (0.945) |
0.0896 (0.462) |
0.148 (0.592) |
0.623 (1.00) |
1 (1.00) |
0.578 (1.00) |
0.453 (1.00) |
0.108 (0.511) |
0.147 (0.592) |
0.096 (0.476) |
0.316 (0.859) |
0.521 (1.00) |
0.128 (0.542) |
0.146 (0.59) |
1 (1.00) |
1 (1.00) |
amp 9q22 31 | 6 (1%) | 493 |
0.685 (1.00) |
0.0858 (0.454) |
0.0977 (0.483) |
0.336 (0.864) |
0.449 (1.00) |
1 (1.00) |
0.195 (0.687) |
0.102 (0.496) |
1 (1.00) |
0.18 (0.654) |
0.497 (1.00) |
0.464 (1.00) |
0.544 (1.00) |
0.0991 (0.483) |
0.0542 (0.357) |
1 (1.00) |
1 (1.00) |
amp 10q25 1 | 4 (1%) | 495 |
0.723 (1.00) |
0.278 (0.82) |
0.738 (1.00) |
0.558 (1.00) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
0.12 (0.529) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0496 (0.341) |
0.287 (0.825) |
1 (1.00) |
0.295 (0.835) |
1 (1.00) |
|
amp 11p13 | 8 (2%) | 491 |
0.54 (1.00) |
0.888 (1.00) |
0.333 (0.864) |
0.828 (1.00) |
0.122 (0.529) |
1 (1.00) |
0.445 (1.00) |
0.516 (1.00) |
1 (1.00) |
1 (1.00) |
0.6 (1.00) |
0.59 (1.00) |
0.12 (0.529) |
0.298 (0.835) |
0.694 (1.00) |
0.173 (0.653) |
1 (1.00) |
amp 13q14 2 | 6 (1%) | 493 |
0.727 (1.00) |
0.468 (1.00) |
0.124 (0.529) |
0.702 (1.00) |
0.216 (0.723) |
1 (1.00) |
1 (1.00) |
0.25 (0.768) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0421 (0.317) |
1 (1.00) |
0.921 (1.00) |
0.485 (1.00) |
1 (1.00) |
amp 18q12 1 | 7 (1%) | 492 |
0.607 (1.00) |
0.938 (1.00) |
0.885 (1.00) |
1 (1.00) |
0.122 (0.529) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.75 (1.00) |
0.467 (1.00) |
0.0421 (0.317) |
0.46 (1.00) |
0.477 (1.00) |
1 (1.00) |
1 (1.00) |
amp 18q22 1 | 7 (1%) | 492 |
0.594 (1.00) |
0.966 (1.00) |
0.882 (1.00) |
0.652 (1.00) |
0.122 (0.529) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.748 (1.00) |
0.325 (0.864) |
0.302 (0.835) |
1 (1.00) |
0.762 (1.00) |
1 (1.00) |
1 (1.00) |
amp 21q21 3 | 6 (1%) | 493 |
0.604 (1.00) |
0.55 (1.00) |
0.848 (1.00) |
0.644 (1.00) |
0.0611 (0.376) |
1 (1.00) |
0.66 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.249 (0.768) |
0.0788 (0.439) |
0.0333 (0.278) |
0.122 (0.529) |
1 (1.00) |
1 (1.00) |
amp xp11 21 | 9 (2%) | 490 |
0.277 (0.819) |
0.0315 (0.271) |
0.03 (0.268) |
0.351 (0.895) |
0.285 (0.825) |
1 (1.00) |
0.121 (0.529) |
0.0875 (0.459) |
1 (1.00) |
1 (1.00) |
0.0342 (0.28) |
0.0857 (0.454) |
0.131 (0.545) |
1 (1.00) |
0.205 (0.703) |
1 (1.00) |
0.456 (1.00) |
amp xq24 | 9 (2%) | 490 |
0.142 (0.579) |
0.0735 (0.424) |
0.031 (0.271) |
0.613 (1.00) |
0.175 (0.653) |
1 (1.00) |
0.121 (0.529) |
0.17 (0.653) |
1 (1.00) |
1 (1.00) |
0.0326 (0.277) |
0.295 (0.835) |
0.093 (0.467) |
0.739 (1.00) |
0.272 (0.814) |
1 (1.00) |
1 (1.00) |
amp xq24 | 9 (2%) | 490 |
0.13 (0.544) |
0.18 (0.654) |
0.0512 (0.343) |
0.56 (1.00) |
0.503 (1.00) |
1 (1.00) |
0.121 (0.529) |
0.336 (0.864) |
1 (1.00) |
1 (1.00) |
0.034 (0.28) |
0.294 (0.835) |
0.524 (1.00) |
0.313 (0.854) |
0.828 (1.00) |
1 (1.00) |
1 (1.00) |
del 1q24 2 | 3 (1%) | 496 |
0.642 (1.00) |
0.816 (1.00) |
0.333 (0.864) |
0.807 (1.00) |
0.248 (0.768) |
0.568 (1.00) |
0.227 (0.739) |
1 (1.00) |
1 (1.00) |
0.61 (1.00) |
1 (1.00) |
1 (1.00) |
0.12 (0.529) |
1 (1.00) |
|||
del 1q42 13 | 5 (1%) | 494 |
0.547 (1.00) |
0.469 (1.00) |
0.797 (1.00) |
0.513 (1.00) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
0.561 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.641 (1.00) |
0.391 (0.945) |
1 (1.00) |
0.0444 (0.33) |
1 (1.00) |
0.0476 (0.339) |
del 4q34 3 | 5 (1%) | 494 |
0.562 (1.00) |
0.73 (1.00) |
0.123 (0.529) |
0.173 (0.653) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
0.562 (1.00) |
0.133 (0.551) |
1 (1.00) |
0.138 (0.564) |
1 (1.00) |
0.287 (0.825) |
0.38 (0.945) |
0.0549 (0.36) |
0.585 (1.00) |
1 (1.00) |
del 5p15 2 | 4 (1%) | 495 |
0.873 (1.00) |
0.178 (0.654) |
0.227 (0.739) |
0.634 (1.00) |
0.623 (1.00) |
1 (1.00) |
0.578 (1.00) |
0.0286 (0.259) |
1 (1.00) |
1 (1.00) |
0.425 (0.983) |
0.0694 (0.409) |
0.868 (1.00) |
0.338 (0.869) |
0.216 (0.723) |
0.321 (0.864) |
0.333 (0.864) |
del 7q34 | 4 (1%) | 495 |
0.764 (1.00) |
0.749 (1.00) |
0.476 (1.00) |
0.502 (1.00) |
0.372 (0.931) |
1 (1.00) |
1 (1.00) |
0.118 (0.529) |
1 (1.00) |
1 (1.00) |
0.645 (1.00) |
1 (1.00) |
0.468 (1.00) |
0.628 (1.00) |
0.0866 (0.456) |
1 (1.00) |
1 (1.00) |
del 8p23 2 | 4 (1%) | 495 |
0.821 (1.00) |
0.902 (1.00) |
0.175 (0.653) |
0.87 (1.00) |
0.123 (0.529) |
1 (1.00) |
0.0598 (0.374) |
0.457 (1.00) |
1 (1.00) |
1 (1.00) |
0.644 (1.00) |
1 (1.00) |
0.0788 (0.439) |
1 (1.00) |
0.75 (1.00) |
1 (1.00) |
|
del 8p22 | 4 (1%) | 495 |
0.821 (1.00) |
0.902 (1.00) |
0.175 (0.653) |
0.871 (1.00) |
0.123 (0.529) |
1 (1.00) |
0.0598 (0.374) |
0.455 (1.00) |
1 (1.00) |
1 (1.00) |
0.646 (1.00) |
1 (1.00) |
0.0788 (0.439) |
1 (1.00) |
0.75 (1.00) |
1 (1.00) |
|
del 8p12 | 4 (1%) | 495 |
0.821 (1.00) |
0.902 (1.00) |
0.176 (0.653) |
0.871 (1.00) |
0.123 (0.529) |
1 (1.00) |
0.0598 (0.374) |
0.456 (1.00) |
1 (1.00) |
1 (1.00) |
0.647 (1.00) |
1 (1.00) |
0.0788 (0.439) |
1 (1.00) |
0.75 (1.00) |
1 (1.00) |
|
del 10q21 2 | 12 (2%) | 487 |
0.555 (1.00) |
0.988 (1.00) |
0.849 (1.00) |
0.74 (1.00) |
0.221 (0.727) |
1 (1.00) |
0.529 (1.00) |
0.55 (1.00) |
0.292 (0.835) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.352 (0.896) |
0.761 (1.00) |
0.0375 (0.295) |
0.846 (1.00) |
0.61 (1.00) |
del 15q25 3 | 9 (2%) | 490 |
0.544 (1.00) |
0.896 (1.00) |
0.284 (0.825) |
0.536 (1.00) |
0.0372 (0.295) |
0.0918 (0.462) |
0.456 (1.00) |
0.0858 (0.454) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0773 (0.439) |
1 (1.00) |
0.155 (0.615) |
0.671 (1.00) |
0.398 (0.945) |
del 18q12 3 | 4 (1%) | 495 |
0.746 (1.00) |
0.682 (1.00) |
0.175 (0.653) |
0.308 (0.848) |
0.623 (1.00) |
1 (1.00) |
1 (1.00) |
0.456 (1.00) |
1 (1.00) |
1 (1.00) |
0.643 (1.00) |
1 (1.00) |
0.332 (0.864) |
0.628 (1.00) |
0.635 (1.00) |
0.183 (0.657) |
|
del 22q12 3 | 89 (18%) | 410 |
0.395 (0.945) |
0.502 (1.00) |
0.615 (1.00) |
0.711 (1.00) |
0.393 (0.945) |
0.641 (1.00) |
0.428 (0.987) |
0.206 (0.703) |
0.482 (1.00) |
0.334 (0.864) |
0.425 (0.983) |
0.28 (0.821) |
0.604 (1.00) |
0.192 (0.678) |
0.56 (1.00) |
0.401 (0.946) |
1 (1.00) |
del 22q13 1 | 88 (18%) | 411 |
0.397 (0.945) |
0.498 (1.00) |
0.679 (1.00) |
0.699 (1.00) |
0.326 (0.864) |
0.641 (1.00) |
0.508 (1.00) |
0.199 (0.687) |
0.481 (1.00) |
0.332 (0.864) |
0.431 (0.992) |
0.281 (0.821) |
0.49 (1.00) |
0.233 (0.749) |
0.491 (1.00) |
0.402 (0.946) |
1 (1.00) |
del 22q13 2 | 88 (18%) | 411 |
0.397 (0.945) |
0.498 (1.00) |
0.677 (1.00) |
0.697 (1.00) |
0.326 (0.864) |
0.641 (1.00) |
0.508 (1.00) |
0.198 (0.687) |
0.481 (1.00) |
0.332 (0.864) |
0.432 (0.992) |
0.286 (0.825) |
0.49 (1.00) |
0.233 (0.749) |
0.491 (1.00) |
0.396 (0.945) |
1 (1.00) |
del 22q13 32 | 89 (18%) | 410 |
0.396 (0.945) |
0.528 (1.00) |
0.691 (1.00) |
0.714 (1.00) |
0.272 (0.814) |
0.645 (1.00) |
0.597 (1.00) |
0.137 (0.564) |
0.482 (1.00) |
0.334 (0.864) |
0.42 (0.978) |
0.279 (0.821) |
0.411 (0.958) |
0.192 (0.678) |
0.491 (1.00) |
0.423 (0.98) |
1 (1.00) |
P value = 0.00933 (Fisher's exact test), Q value = 0.16
Table S1. Gene #1: 'amp_1p36.32' versus Clinical Feature #16: 'RACE'
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 52 | 27 | 325 |
AMP PEAK 1(1P36.32) MUTATED | 0 | 0 | 3 | 2 |
AMP PEAK 1(1P36.32) WILD-TYPE | 1 | 52 | 24 | 323 |
Figure S1. Get High-res Image Gene #1: 'amp_1p36.32' versus Clinical Feature #16: 'RACE'

P value = 0.00814 (Fisher's exact test), Q value = 0.16
Table S2. Gene #2: 'amp_1p32.3' versus Clinical Feature #10: 'RADIATION_EXPOSURE'
nPatients | NO | YES |
---|---|---|
ALL | 421 | 17 |
AMP PEAK 2(1P32.3) MUTATED | 2 | 2 |
AMP PEAK 2(1P32.3) WILD-TYPE | 419 | 15 |
Figure S2. Get High-res Image Gene #2: 'amp_1p32.3' versus Clinical Feature #10: 'RADIATION_EXPOSURE'

P value = 4.67e-05 (Wilcoxon-test), Q value = 0.0082
Table S3. Gene #4: 'amp_1q31.2' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 4(1Q31.2) MUTATED | 29 | 59.9 (17.3) |
AMP PEAK 4(1Q31.2) WILD-TYPE | 470 | 46.4 (15.4) |
Figure S3. Get High-res Image Gene #4: 'amp_1q31.2' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 2e-05 (Fisher's exact test), Q value = 0.0048
Table S4. Gene #4: 'amp_1q31.2' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 4(1Q31.2) MUTATED | 7 | 0 | 12 | 1 | 9 | 0 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 275 | 52 | 97 | 1 | 37 | 6 |
Figure S4. Get High-res Image Gene #4: 'amp_1q31.2' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0028
Table S5. Gene #4: 'amp_1q31.2' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 141 | 166 | 167 | 23 |
AMP PEAK 4(1Q31.2) MUTATED | 2 | 4 | 18 | 5 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 139 | 162 | 149 | 18 |
Figure S5. Get High-res Image Gene #4: 'amp_1q31.2' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'

P value = 0.00109 (Fisher's exact test), Q value = 0.08
Table S6. Gene #4: 'amp_1q31.2' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 4(1Q31.2) MUTATED | 5 | 22 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 219 | 203 |
Figure S6. Get High-res Image Gene #4: 'amp_1q31.2' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.00643 (Fisher's exact test), Q value = 0.15
Table S7. Gene #4: 'amp_1q31.2' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 4(1Q31.2) MUTATED | 0 | 25 | 0 | 4 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 9 | 331 | 98 | 32 |
Figure S7. Get High-res Image Gene #4: 'amp_1q31.2' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0028
Table S8. Gene #4: 'amp_1q31.2' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 4(1Q31.2) MUTATED | 14 | 4 | 10 | 1 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 118 | 14 | 320 | 0 |
Figure S8. Get High-res Image Gene #4: 'amp_1q31.2' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.00349 (Wilcoxon-test), Q value = 0.11
Table S9. Gene #4: 'amp_1q31.2' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 4(1Q31.2) MUTATED | 24 | 3.8 (1.5) |
AMP PEAK 4(1Q31.2) WILD-TYPE | 377 | 2.9 (1.6) |
Figure S9. Get High-res Image Gene #4: 'amp_1q31.2' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.00357 (Fisher's exact test), Q value = 0.11
Table S10. Gene #4: 'amp_1q31.2' versus Clinical Feature #16: 'RACE'
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 52 | 27 | 325 |
AMP PEAK 4(1Q31.2) MUTATED | 1 | 1 | 5 | 21 |
AMP PEAK 4(1Q31.2) WILD-TYPE | 0 | 51 | 22 | 304 |
Figure S10. Get High-res Image Gene #4: 'amp_1q31.2' versus Clinical Feature #16: 'RACE'

P value = 2.47e-06 (Wilcoxon-test), Q value = 0.0021
Table S11. Gene #5: 'amp_1q43' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 5(1Q43) MUTATED | 29 | 61.7 (15.5) |
AMP PEAK 5(1Q43) WILD-TYPE | 470 | 46.3 (15.4) |
Figure S11. Get High-res Image Gene #5: 'amp_1q43' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 1e-05 (Fisher's exact test), Q value = 0.0028
Table S12. Gene #5: 'amp_1q43' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 5(1Q43) MUTATED | 6 | 0 | 12 | 1 | 9 | 1 |
AMP PEAK 5(1Q43) WILD-TYPE | 276 | 52 | 97 | 1 | 37 | 5 |
Figure S12. Get High-res Image Gene #5: 'amp_1q43' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 1e-05 (Fisher's exact test), Q value = 0.0028
Table S13. Gene #5: 'amp_1q43' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 141 | 166 | 167 | 23 |
AMP PEAK 5(1Q43) MUTATED | 2 | 3 | 18 | 6 |
AMP PEAK 5(1Q43) WILD-TYPE | 139 | 163 | 149 | 17 |
Figure S13. Get High-res Image Gene #5: 'amp_1q43' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'

P value = 0.00277 (Fisher's exact test), Q value = 0.11
Table S14. Gene #5: 'amp_1q43' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 5(1Q43) MUTATED | 6 | 22 |
AMP PEAK 5(1Q43) WILD-TYPE | 218 | 203 |
Figure S14. Get High-res Image Gene #5: 'amp_1q43' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.00649 (Fisher's exact test), Q value = 0.15
Table S15. Gene #5: 'amp_1q43' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 5(1Q43) MUTATED | 0 | 25 | 0 | 4 |
AMP PEAK 5(1Q43) WILD-TYPE | 9 | 331 | 98 | 32 |
Figure S15. Get High-res Image Gene #5: 'amp_1q43' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 4e-05 (Fisher's exact test), Q value = 0.0082
Table S16. Gene #5: 'amp_1q43' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 5(1Q43) MUTATED | 14 | 4 | 10 | 1 |
AMP PEAK 5(1Q43) WILD-TYPE | 118 | 14 | 320 | 0 |
Figure S16. Get High-res Image Gene #5: 'amp_1q43' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.00604 (Wilcoxon-test), Q value = 0.15
Table S17. Gene #5: 'amp_1q43' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 5(1Q43) MUTATED | 24 | 3.8 (1.5) |
AMP PEAK 5(1Q43) WILD-TYPE | 377 | 2.9 (1.6) |
Figure S17. Get High-res Image Gene #5: 'amp_1q43' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.00336 (Fisher's exact test), Q value = 0.11
Table S18. Gene #5: 'amp_1q43' versus Clinical Feature #16: 'RACE'
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 52 | 27 | 325 |
AMP PEAK 5(1Q43) MUTATED | 1 | 1 | 5 | 21 |
AMP PEAK 5(1Q43) WILD-TYPE | 0 | 51 | 22 | 304 |
Figure S18. Get High-res Image Gene #5: 'amp_1q43' versus Clinical Feature #16: 'RACE'

P value = 0.00498 (logrank test), Q value = 0.14
Table S19. Gene #8: 'amp_3p22.3' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 10(3P22.3) MUTATED | 4 | 1 | 6.0 - 57.6 (12.2) |
AMP PEAK 10(3P22.3) WILD-TYPE | 493 | 13 | 0.1 - 169.3 (20.4) |
Figure S19. Get High-res Image Gene #8: 'amp_3p22.3' versus Clinical Feature #1: 'Time to Death'

P value = 0.015 (Wilcoxon-test), Q value = 0.19
Table S20. Gene #8: 'amp_3p22.3' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 10(3P22.3) MUTATED | 4 | 66.5 (9.0) |
AMP PEAK 10(3P22.3) WILD-TYPE | 495 | 47.0 (15.7) |
Figure S20. Get High-res Image Gene #8: 'amp_3p22.3' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.0108 (Fisher's exact test), Q value = 0.16
Table S21. Gene #8: 'amp_3p22.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 10(3P22.3) MUTATED | 1 | 2 | 0 | 0 | 0 | 1 |
AMP PEAK 10(3P22.3) WILD-TYPE | 281 | 50 | 109 | 2 | 46 | 5 |
Figure S21. Get High-res Image Gene #8: 'amp_3p22.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0106 (logrank test), Q value = 0.16
Table S22. Gene #9: 'amp_3p14.1' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 11(3P14.1) MUTATED | 5 | 1 | 6.0 - 57.6 (21.4) |
AMP PEAK 11(3P14.1) WILD-TYPE | 492 | 13 | 0.1 - 169.3 (20.3) |
Figure S22. Get High-res Image Gene #9: 'amp_3p14.1' versus Clinical Feature #1: 'Time to Death'

P value = 0.017 (logrank test), Q value = 0.2
Table S23. Gene #10: 'amp_4p16.1' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 12(4P16.1) MUTATED | 7 | 1 | 1.0 - 57.0 (13.8) |
AMP PEAK 12(4P16.1) WILD-TYPE | 490 | 13 | 0.1 - 169.3 (20.5) |
Figure S23. Get High-res Image Gene #10: 'amp_4p16.1' versus Clinical Feature #1: 'Time to Death'

P value = 0.00733 (Fisher's exact test), Q value = 0.16
Table S24. Gene #10: 'amp_4p16.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 12(4P16.1) MUTATED | 7 | 0 |
AMP PEAK 12(4P16.1) WILD-TYPE | 217 | 225 |
Figure S24. Get High-res Image Gene #10: 'amp_4p16.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0125 (Wilcoxon-test), Q value = 0.17
Table S25. Gene #10: 'amp_4p16.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 12(4P16.1) MUTATED | 6 | 0.0 (0.0) |
AMP PEAK 12(4P16.1) WILD-TYPE | 377 | 3.7 (6.3) |
Figure S25. Get High-res Image Gene #10: 'amp_4p16.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0239 (logrank test), Q value = 0.24
Table S26. Gene #11: 'amp_4q22.1' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 13(4Q22.1) MUTATED | 7 | 1 | 1.0 - 57.0 (14.7) |
AMP PEAK 13(4Q22.1) WILD-TYPE | 490 | 13 | 0.1 - 169.3 (20.4) |
Figure S26. Get High-res Image Gene #11: 'amp_4q22.1' versus Clinical Feature #1: 'Time to Death'

P value = 0.0146 (logrank test), Q value = 0.19
Table S27. Gene #12: 'amp_4q28.2' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 14(4Q28.2) MUTATED | 6 | 1 | 1.0 - 57.0 (14.1) |
AMP PEAK 14(4Q28.2) WILD-TYPE | 491 | 13 | 0.1 - 169.3 (20.4) |
Figure S27. Get High-res Image Gene #12: 'amp_4q28.2' versus Clinical Feature #1: 'Time to Death'

P value = 0.0149 (Fisher's exact test), Q value = 0.19
Table S28. Gene #12: 'amp_4q28.2' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 14(4Q28.2) MUTATED | 6 | 0 |
AMP PEAK 14(4Q28.2) WILD-TYPE | 218 | 225 |
Figure S28. Get High-res Image Gene #12: 'amp_4q28.2' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0228 (Wilcoxon-test), Q value = 0.23
Table S29. Gene #12: 'amp_4q28.2' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 14(4Q28.2) MUTATED | 5 | 0.0 (0.0) |
AMP PEAK 14(4Q28.2) WILD-TYPE | 378 | 3.7 (6.3) |
Figure S29. Get High-res Image Gene #12: 'amp_4q28.2' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0201 (Fisher's exact test), Q value = 0.22
Table S30. Gene #13: 'amp_4q31.21' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 15(4Q31.21) MUTATED | 8 | 1 |
AMP PEAK 15(4Q31.21) WILD-TYPE | 216 | 224 |
Figure S30. Get High-res Image Gene #13: 'amp_4q31.21' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0063 (Wilcoxon-test), Q value = 0.15
Table S31. Gene #13: 'amp_4q31.21' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 15(4Q31.21) MUTATED | 9 | 0.1 (0.3) |
AMP PEAK 15(4Q31.21) WILD-TYPE | 374 | 3.8 (6.3) |
Figure S31. Get High-res Image Gene #13: 'amp_4q31.21' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00733 (Fisher's exact test), Q value = 0.16
Table S32. Gene #14: 'amp_4q32.3' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 16(4Q32.3) MUTATED | 7 | 0 |
AMP PEAK 16(4Q32.3) WILD-TYPE | 217 | 225 |
Figure S32. Get High-res Image Gene #14: 'amp_4q32.3' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.00691 (Wilcoxon-test), Q value = 0.16
Table S33. Gene #14: 'amp_4q32.3' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 16(4Q32.3) MUTATED | 7 | 0.0 (0.0) |
AMP PEAK 16(4Q32.3) WILD-TYPE | 376 | 3.7 (6.3) |
Figure S33. Get High-res Image Gene #14: 'amp_4q32.3' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 4.94e-05 (Wilcoxon-test), Q value = 0.0082
Table S34. Gene #15: 'amp_5p14.3' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 17(5P14.3) MUTATED | 23 | 61.1 (15.0) |
AMP PEAK 17(5P14.3) WILD-TYPE | 476 | 46.5 (15.5) |
Figure S34. Get High-res Image Gene #15: 'amp_5p14.3' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.00184 (Fisher's exact test), Q value = 0.11
Table S35. Gene #15: 'amp_5p14.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 17(5P14.3) MUTATED | 5 | 5 | 8 | 1 | 4 | 0 |
AMP PEAK 17(5P14.3) WILD-TYPE | 277 | 47 | 101 | 1 | 42 | 6 |
Figure S35. Get High-res Image Gene #15: 'amp_5p14.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0181 (Wilcoxon-test), Q value = 0.2
Table S36. Gene #15: 'amp_5p14.3' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 17(5P14.3) MUTATED | 22 | 3.7 (1.6) |
AMP PEAK 17(5P14.3) WILD-TYPE | 379 | 2.9 (1.6) |
Figure S36. Get High-res Image Gene #15: 'amp_5p14.3' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.0208 (Wilcoxon-test), Q value = 0.22
Table S37. Gene #16: 'amp_5q21.1' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 18(5Q21.1) MUTATED | 23 | 54.7 (15.1) |
AMP PEAK 18(5Q21.1) WILD-TYPE | 476 | 46.8 (15.8) |
Figure S37. Get High-res Image Gene #16: 'amp_5q21.1' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.009 (Fisher's exact test), Q value = 0.16
Table S38. Gene #16: 'amp_5q21.1' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 18(5Q21.1) MUTATED | 8 | 7 | 5 | 1 | 2 | 0 |
AMP PEAK 18(5Q21.1) WILD-TYPE | 274 | 45 | 104 | 1 | 44 | 6 |
Figure S38. Get High-res Image Gene #16: 'amp_5q21.1' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0101 (Fisher's exact test), Q value = 0.16
Table S39. Gene #16: 'amp_5q21.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 18(5Q21.1) MUTATED | 15 | 4 |
AMP PEAK 18(5Q21.1) WILD-TYPE | 209 | 221 |
Figure S39. Get High-res Image Gene #16: 'amp_5q21.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.00817 (Wilcoxon-test), Q value = 0.16
Table S40. Gene #16: 'amp_5q21.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 18(5Q21.1) MUTATED | 15 | 0.8 (1.9) |
AMP PEAK 18(5Q21.1) WILD-TYPE | 368 | 3.8 (6.3) |
Figure S40. Get High-res Image Gene #16: 'amp_5q21.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00185 (Wilcoxon-test), Q value = 0.11
Table S41. Gene #17: 'amp_5q21.1' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 19(5Q21.1) MUTATED | 20 | 57.9 (13.7) |
AMP PEAK 19(5Q21.1) WILD-TYPE | 479 | 46.7 (15.7) |
Figure S41. Get High-res Image Gene #17: 'amp_5q21.1' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 9e-04 (Fisher's exact test), Q value = 0.079
Table S42. Gene #17: 'amp_5q21.1' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 19(5Q21.1) MUTATED | 5 | 7 | 6 | 1 | 1 | 0 |
AMP PEAK 19(5Q21.1) WILD-TYPE | 277 | 45 | 103 | 1 | 45 | 6 |
Figure S42. Get High-res Image Gene #17: 'amp_5q21.1' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.00196 (Fisher's exact test), Q value = 0.11
Table S43. Gene #17: 'amp_5q21.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 19(5Q21.1) MUTATED | 14 | 2 |
AMP PEAK 19(5Q21.1) WILD-TYPE | 210 | 223 |
Figure S43. Get High-res Image Gene #17: 'amp_5q21.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.00196 (Wilcoxon-test), Q value = 0.11
Table S44. Gene #17: 'amp_5q21.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 19(5Q21.1) MUTATED | 13 | 0.5 (1.9) |
AMP PEAK 19(5Q21.1) WILD-TYPE | 370 | 3.8 (6.3) |
Figure S44. Get High-res Image Gene #17: 'amp_5q21.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0128 (Wilcoxon-test), Q value = 0.17
Table S45. Gene #17: 'amp_5q21.1' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 19(5Q21.1) MUTATED | 19 | 3.9 (1.8) |
AMP PEAK 19(5Q21.1) WILD-TYPE | 382 | 2.9 (1.6) |
Figure S45. Get High-res Image Gene #17: 'amp_5q21.1' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.0124 (Wilcoxon-test), Q value = 0.17
Table S46. Gene #18: 'amp_5q33.1' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 20(5Q33.1) MUTATED | 21 | 55.7 (14.8) |
AMP PEAK 20(5Q33.1) WILD-TYPE | 478 | 46.8 (15.7) |
Figure S46. Get High-res Image Gene #18: 'amp_5q33.1' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.00473 (Fisher's exact test), Q value = 0.14
Table S47. Gene #18: 'amp_5q33.1' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 20(5Q33.1) MUTATED | 7 | 7 | 5 | 1 | 1 | 0 |
AMP PEAK 20(5Q33.1) WILD-TYPE | 275 | 45 | 104 | 1 | 45 | 6 |
Figure S47. Get High-res Image Gene #18: 'amp_5q33.1' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0112 (Fisher's exact test), Q value = 0.16
Table S48. Gene #18: 'amp_5q33.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 20(5Q33.1) MUTATED | 13 | 3 |
AMP PEAK 20(5Q33.1) WILD-TYPE | 211 | 222 |
Figure S48. Get High-res Image Gene #18: 'amp_5q33.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0102 (Wilcoxon-test), Q value = 0.16
Table S49. Gene #18: 'amp_5q33.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 20(5Q33.1) MUTATED | 14 | 1.4 (3.8) |
AMP PEAK 20(5Q33.1) WILD-TYPE | 369 | 3.8 (6.3) |
Figure S49. Get High-res Image Gene #18: 'amp_5q33.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0027 (Wilcoxon-test), Q value = 0.11
Table S50. Gene #19: 'amp_5q35.2' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 21(5Q35.2) MUTATED | 20 | 57.5 (13.8) |
AMP PEAK 21(5Q35.2) WILD-TYPE | 479 | 46.7 (15.7) |
Figure S50. Get High-res Image Gene #19: 'amp_5q35.2' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.00296 (Fisher's exact test), Q value = 0.11
Table S51. Gene #19: 'amp_5q35.2' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 21(5Q35.2) MUTATED | 5 | 6 | 6 | 1 | 2 | 0 |
AMP PEAK 21(5Q35.2) WILD-TYPE | 277 | 46 | 103 | 1 | 44 | 6 |
Figure S51. Get High-res Image Gene #19: 'amp_5q35.2' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0112 (Fisher's exact test), Q value = 0.16
Table S52. Gene #19: 'amp_5q35.2' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 21(5Q35.2) MUTATED | 13 | 3 |
AMP PEAK 21(5Q35.2) WILD-TYPE | 211 | 222 |
Figure S52. Get High-res Image Gene #19: 'amp_5q35.2' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0135 (Fisher's exact test), Q value = 0.18
Table S53. Gene #19: 'amp_5q35.2' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 21(5Q35.2) MUTATED | 0 | 10 | 10 | 0 |
AMP PEAK 21(5Q35.2) WILD-TYPE | 9 | 346 | 88 | 36 |
Figure S53. Get High-res Image Gene #19: 'amp_5q35.2' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.0117 (Fisher's exact test), Q value = 0.17
Table S54. Gene #19: 'amp_5q35.2' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 21(5Q35.2) MUTATED | 3 | 2 | 14 | 1 |
AMP PEAK 21(5Q35.2) WILD-TYPE | 129 | 16 | 316 | 0 |
Figure S54. Get High-res Image Gene #19: 'amp_5q35.2' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.00615 (Wilcoxon-test), Q value = 0.15
Table S55. Gene #19: 'amp_5q35.2' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 21(5Q35.2) MUTATED | 14 | 0.9 (2.2) |
AMP PEAK 21(5Q35.2) WILD-TYPE | 369 | 3.8 (6.3) |
Figure S55. Get High-res Image Gene #19: 'amp_5q35.2' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00806 (Wilcoxon-test), Q value = 0.16
Table S56. Gene #19: 'amp_5q35.2' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 21(5Q35.2) MUTATED | 19 | 4.0 (1.8) |
AMP PEAK 21(5Q35.2) WILD-TYPE | 382 | 2.9 (1.6) |
Figure S56. Get High-res Image Gene #19: 'amp_5q35.2' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.000492 (logrank test), Q value = 0.059
Table S57. Gene #20: 'amp_6p22.3' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 22(6P22.3) MUTATED | 3 | 1 | 13.6 - 34.4 (33.6) |
AMP PEAK 22(6P22.3) WILD-TYPE | 494 | 13 | 0.1 - 169.3 (20.3) |
Figure S57. Get High-res Image Gene #20: 'amp_6p22.3' versus Clinical Feature #1: 'Time to Death'

P value = 1.46e-06 (logrank test), Q value = 0.0021
Table S58. Gene #21: 'amp_6p22.2' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 23(6P22.2) MUTATED | 4 | 2 | 17.4 - 57.0 (34.0) |
AMP PEAK 23(6P22.2) WILD-TYPE | 493 | 12 | 0.1 - 169.3 (20.2) |
Figure S58. Get High-res Image Gene #21: 'amp_6p22.2' versus Clinical Feature #1: 'Time to Death'

P value = 0.00451 (Wilcoxon-test), Q value = 0.13
Table S59. Gene #21: 'amp_6p22.2' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 23(6P22.2) MUTATED | 4 | 74.2 (13.3) |
AMP PEAK 23(6P22.2) WILD-TYPE | 495 | 47.0 (15.6) |
Figure S59. Get High-res Image Gene #21: 'amp_6p22.2' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.00427 (logrank test), Q value = 0.13
Table S60. Gene #22: 'amp_6p21.31' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 24(6P21.31) MUTATED | 3 | 1 | 33.6 - 36.5 (34.4) |
AMP PEAK 24(6P21.31) WILD-TYPE | 494 | 13 | 0.1 - 169.3 (20.2) |
Figure S60. Get High-res Image Gene #22: 'amp_6p21.31' versus Clinical Feature #1: 'Time to Death'

P value = 0.0121 (Fisher's exact test), Q value = 0.17
Table S61. Gene #22: 'amp_6p21.31' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 24(6P21.31) MUTATED | 0 | 1 | 1 | 0 | 0 | 1 |
AMP PEAK 24(6P21.31) WILD-TYPE | 282 | 51 | 108 | 2 | 46 | 5 |
Figure S61. Get High-res Image Gene #22: 'amp_6p21.31' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.00111 (logrank test), Q value = 0.08
Table S62. Gene #24: 'amp_6p12.2' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
AMP PEAK 26(6P12.2) MUTATED | 3 | 1 | 29.7 - 34.4 (33.6) |
AMP PEAK 26(6P12.2) WILD-TYPE | 494 | 13 | 0.1 - 169.3 (20.2) |
Figure S62. Get High-res Image Gene #24: 'amp_6p12.2' versus Clinical Feature #1: 'Time to Death'

P value = 0.0186 (Fisher's exact test), Q value = 0.21
Table S63. Gene #27: 'amp_7q11.21' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 29(7Q11.21) MUTATED | 9 | 6 | 3 | 1 | 1 | 0 |
AMP PEAK 29(7Q11.21) WILD-TYPE | 273 | 46 | 106 | 1 | 45 | 6 |
Figure S63. Get High-res Image Gene #27: 'amp_7q11.21' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.00358 (Fisher's exact test), Q value = 0.11
Table S64. Gene #27: 'amp_7q11.21' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 29(7Q11.21) MUTATED | 13 | 2 |
AMP PEAK 29(7Q11.21) WILD-TYPE | 211 | 223 |
Figure S64. Get High-res Image Gene #27: 'amp_7q11.21' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0041 (Fisher's exact test), Q value = 0.12
Table S65. Gene #27: 'amp_7q11.21' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 29(7Q11.21) MUTATED | 1 | 1 | 16 | 1 |
AMP PEAK 29(7Q11.21) WILD-TYPE | 131 | 17 | 314 | 0 |
Figure S65. Get High-res Image Gene #27: 'amp_7q11.21' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.00196 (Wilcoxon-test), Q value = 0.11
Table S66. Gene #27: 'amp_7q11.21' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 29(7Q11.21) MUTATED | 13 | 0.5 (1.9) |
AMP PEAK 29(7Q11.21) WILD-TYPE | 370 | 3.8 (6.3) |
Figure S66. Get High-res Image Gene #27: 'amp_7q11.21' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00866 (Wilcoxon-test), Q value = 0.16
Table S67. Gene #28: 'amp_7q21.11' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 30(7Q21.11) MUTATED | 21 | 55.7 (13.4) |
AMP PEAK 30(7Q21.11) WILD-TYPE | 478 | 46.8 (15.8) |
Figure S67. Get High-res Image Gene #28: 'amp_7q21.11' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.0249 (Fisher's exact test), Q value = 0.24
Table S68. Gene #28: 'amp_7q21.11' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 30(7Q21.11) MUTATED | 9 | 6 | 4 | 1 | 1 | 0 |
AMP PEAK 30(7Q21.11) WILD-TYPE | 273 | 46 | 105 | 1 | 45 | 6 |
Figure S68. Get High-res Image Gene #28: 'amp_7q21.11' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0112 (Fisher's exact test), Q value = 0.16
Table S69. Gene #28: 'amp_7q21.11' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 30(7Q21.11) MUTATED | 13 | 3 |
AMP PEAK 30(7Q21.11) WILD-TYPE | 211 | 222 |
Figure S69. Get High-res Image Gene #28: 'amp_7q21.11' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0217 (Fisher's exact test), Q value = 0.22
Table S70. Gene #28: 'amp_7q21.11' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 30(7Q21.11) MUTATED | 0 | 11 | 10 | 0 |
AMP PEAK 30(7Q21.11) WILD-TYPE | 9 | 345 | 88 | 36 |
Figure S70. Get High-res Image Gene #28: 'amp_7q21.11' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.0141 (Fisher's exact test), Q value = 0.18
Table S71. Gene #28: 'amp_7q21.11' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 30(7Q21.11) MUTATED | 2 | 1 | 16 | 1 |
AMP PEAK 30(7Q21.11) WILD-TYPE | 130 | 17 | 314 | 0 |
Figure S71. Get High-res Image Gene #28: 'amp_7q21.11' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.0011 (Wilcoxon-test), Q value = 0.08
Table S72. Gene #28: 'amp_7q21.11' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 30(7Q21.11) MUTATED | 14 | 0.5 (1.9) |
AMP PEAK 30(7Q21.11) WILD-TYPE | 369 | 3.8 (6.3) |
Figure S72. Get High-res Image Gene #28: 'amp_7q21.11' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00849 (Fisher's exact test), Q value = 0.16
Table S73. Gene #29: 'amp_7q31.1' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 31(7Q31.1) MUTATED | 0 | 11 | 11 | 0 |
AMP PEAK 31(7Q31.1) WILD-TYPE | 9 | 345 | 87 | 36 |
Figure S73. Get High-res Image Gene #29: 'amp_7q31.1' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.0104 (Wilcoxon-test), Q value = 0.16
Table S74. Gene #29: 'amp_7q31.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 31(7Q31.1) MUTATED | 15 | 1.1 (2.6) |
AMP PEAK 31(7Q31.1) WILD-TYPE | 368 | 3.8 (6.3) |
Figure S74. Get High-res Image Gene #29: 'amp_7q31.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0112 (Fisher's exact test), Q value = 0.16
Table S75. Gene #30: 'amp_7q34' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 32(7Q34) MUTATED | 13 | 3 |
AMP PEAK 32(7Q34) WILD-TYPE | 211 | 222 |
Figure S75. Get High-res Image Gene #30: 'amp_7q34' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0086 (Fisher's exact test), Q value = 0.16
Table S76. Gene #30: 'amp_7q34' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 32(7Q34) MUTATED | 0 | 11 | 11 | 0 |
AMP PEAK 32(7Q34) WILD-TYPE | 9 | 345 | 87 | 36 |
Figure S76. Get High-res Image Gene #30: 'amp_7q34' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.0122 (Fisher's exact test), Q value = 0.17
Table S77. Gene #30: 'amp_7q34' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 32(7Q34) MUTATED | 2 | 1 | 17 | 1 |
AMP PEAK 32(7Q34) WILD-TYPE | 130 | 17 | 313 | 0 |
Figure S77. Get High-res Image Gene #30: 'amp_7q34' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.00567 (Wilcoxon-test), Q value = 0.15
Table S78. Gene #30: 'amp_7q34' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 32(7Q34) MUTATED | 15 | 1.3 (3.5) |
AMP PEAK 32(7Q34) WILD-TYPE | 368 | 3.8 (6.3) |
Figure S78. Get High-res Image Gene #30: 'amp_7q34' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0113 (Wilcoxon-test), Q value = 0.16
Table S79. Gene #32: 'amp_9q31.1' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 34(9Q31.1) MUTATED | 6 | 4.3 (0.8) |
AMP PEAK 34(9Q31.1) WILD-TYPE | 395 | 3.0 (1.6) |
Figure S79. Get High-res Image Gene #32: 'amp_9q31.1' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.0239 (Fisher's exact test), Q value = 0.24
Table S80. Gene #33: 'amp_9q34.3' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 35(9Q34.3) MUTATED | 0 | 2 | 5 | 0 |
AMP PEAK 35(9Q34.3) WILD-TYPE | 9 | 354 | 93 | 36 |
Figure S80. Get High-res Image Gene #33: 'amp_9q34.3' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.00926 (Wilcoxon-test), Q value = 0.16
Table S81. Gene #33: 'amp_9q34.3' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
AMP PEAK 35(9Q34.3) MUTATED | 7 | 4.5 (1.4) |
AMP PEAK 35(9Q34.3) WILD-TYPE | 394 | 3.0 (1.6) |
Figure S81. Get High-res Image Gene #33: 'amp_9q34.3' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.00951 (Wilcoxon-test), Q value = 0.16
Table S82. Gene #34: 'amp_10q24.2' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 36(10Q24.2) MUTATED | 3 | 74.0 (7.9) |
AMP PEAK 36(10Q24.2) WILD-TYPE | 496 | 47.0 (15.7) |
Figure S82. Get High-res Image Gene #34: 'amp_10q24.2' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.0213 (Fisher's exact test), Q value = 0.22
Table S83. Gene #34: 'amp_10q24.2' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 36(10Q24.2) MUTATED | 0 | 0 | 3 | 0 |
AMP PEAK 36(10Q24.2) WILD-TYPE | 9 | 356 | 95 | 36 |
Figure S83. Get High-res Image Gene #34: 'amp_10q24.2' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.000862 (Fisher's exact test), Q value = 0.079
Table S84. Gene #37: 'amp_12p11.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 39(12P11.1) MUTATED | 10 | 0 |
AMP PEAK 39(12P11.1) WILD-TYPE | 214 | 225 |
Figure S84. Get High-res Image Gene #37: 'amp_12p11.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.00153 (Fisher's exact test), Q value = 0.1
Table S85. Gene #37: 'amp_12p11.1' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 39(12P11.1) MUTATED | 0 | 6 | 10 | 0 |
AMP PEAK 39(12P11.1) WILD-TYPE | 9 | 350 | 88 | 36 |
Figure S85. Get High-res Image Gene #37: 'amp_12p11.1' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.00213 (Wilcoxon-test), Q value = 0.11
Table S86. Gene #37: 'amp_12p11.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 39(12P11.1) MUTATED | 9 | 0.0 (0.0) |
AMP PEAK 39(12P11.1) WILD-TYPE | 374 | 3.8 (6.3) |
Figure S86. Get High-res Image Gene #37: 'amp_12p11.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.000204 (Fisher's exact test), Q value = 0.031
Table S87. Gene #38: 'amp_12q21.31' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 40(12Q21.31) MUTATED | 12 | 0 |
AMP PEAK 40(12Q21.31) WILD-TYPE | 212 | 225 |
Figure S87. Get High-res Image Gene #38: 'amp_12q21.31' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.016 (Fisher's exact test), Q value = 0.19
Table S88. Gene #38: 'amp_12q21.31' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 40(12Q21.31) MUTATED | 0 | 8 | 9 | 0 |
AMP PEAK 40(12Q21.31) WILD-TYPE | 9 | 348 | 89 | 36 |
Figure S88. Get High-res Image Gene #38: 'amp_12q21.31' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.000661 (Wilcoxon-test), Q value = 0.065
Table S89. Gene #38: 'amp_12q21.31' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 40(12Q21.31) MUTATED | 11 | 0.0 (0.0) |
AMP PEAK 40(12Q21.31) WILD-TYPE | 372 | 3.8 (6.3) |
Figure S89. Get High-res Image Gene #38: 'amp_12q21.31' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00301 (Fisher's exact test), Q value = 0.11
Table S90. Gene #39: 'amp_12q23.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 41(12Q23.1) MUTATED | 11 | 1 |
AMP PEAK 41(12Q23.1) WILD-TYPE | 213 | 224 |
Figure S90. Get High-res Image Gene #39: 'amp_12q23.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0165 (Fisher's exact test), Q value = 0.19
Table S91. Gene #39: 'amp_12q23.1' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 41(12Q23.1) MUTATED | 0 | 8 | 9 | 0 |
AMP PEAK 41(12Q23.1) WILD-TYPE | 9 | 348 | 89 | 36 |
Figure S91. Get High-res Image Gene #39: 'amp_12q23.1' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.00618 (Wilcoxon-test), Q value = 0.15
Table S92. Gene #39: 'amp_12q23.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 41(12Q23.1) MUTATED | 11 | 0.6 (2.1) |
AMP PEAK 41(12Q23.1) WILD-TYPE | 372 | 3.8 (6.3) |
Figure S92. Get High-res Image Gene #39: 'amp_12q23.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0104 (Fisher's exact test), Q value = 0.16
Table S93. Gene #41: 'amp_13q34' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 43(13Q34) MUTATED | 1 | 2 | 4 | 0 |
AMP PEAK 43(13Q34) WILD-TYPE | 8 | 354 | 94 | 36 |
Figure S93. Get High-res Image Gene #41: 'amp_13q34' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.0252 (Fisher's exact test), Q value = 0.24
Table S94. Gene #42: 'amp_14q12' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 44(14Q12) MUTATED | 3 | 5 | 4 | 0 | 1 | 0 |
AMP PEAK 44(14Q12) WILD-TYPE | 279 | 47 | 105 | 2 | 45 | 6 |
Figure S94. Get High-res Image Gene #42: 'amp_14q12' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.00314 (Fisher's exact test), Q value = 0.11
Table S95. Gene #43: 'amp_14q32.31' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 45(14Q32.31) MUTATED | 2 | 5 | 6 | 0 | 0 | 0 |
AMP PEAK 45(14Q32.31) WILD-TYPE | 280 | 47 | 103 | 2 | 46 | 6 |
Figure S95. Get High-res Image Gene #43: 'amp_14q32.31' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0108 (Fisher's exact test), Q value = 0.16
Table S96. Gene #43: 'amp_14q32.31' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 45(14Q32.31) MUTATED | 9 | 1 |
AMP PEAK 45(14Q32.31) WILD-TYPE | 215 | 224 |
Figure S96. Get High-res Image Gene #43: 'amp_14q32.31' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0212 (Fisher's exact test), Q value = 0.22
Table S97. Gene #43: 'amp_14q32.31' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 45(14Q32.31) MUTATED | 0 | 5 | 7 | 1 |
AMP PEAK 45(14Q32.31) WILD-TYPE | 9 | 351 | 91 | 35 |
Figure S97. Get High-res Image Gene #43: 'amp_14q32.31' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.0175 (Wilcoxon-test), Q value = 0.2
Table S98. Gene #43: 'amp_14q32.31' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 45(14Q32.31) MUTATED | 9 | 0.7 (2.0) |
AMP PEAK 45(14Q32.31) WILD-TYPE | 374 | 3.8 (6.3) |
Figure S98. Get High-res Image Gene #43: 'amp_14q32.31' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00733 (Fisher's exact test), Q value = 0.16
Table S99. Gene #46: 'amp_18q22.3' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 50(18Q22.3) MUTATED | 7 | 0 |
AMP PEAK 50(18Q22.3) WILD-TYPE | 217 | 225 |
Figure S99. Get High-res Image Gene #46: 'amp_18q22.3' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0125 (Wilcoxon-test), Q value = 0.17
Table S100. Gene #46: 'amp_18q22.3' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 50(18Q22.3) MUTATED | 6 | 0.0 (0.0) |
AMP PEAK 50(18Q22.3) WILD-TYPE | 377 | 3.7 (6.3) |
Figure S100. Get High-res Image Gene #46: 'amp_18q22.3' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00769 (Fisher's exact test), Q value = 0.16
Table S101. Gene #47: 'amp_19p13.3' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 51(19P13.3) MUTATED | 0 | 2 | 6 | 0 |
AMP PEAK 51(19P13.3) WILD-TYPE | 9 | 354 | 92 | 36 |
Figure S101. Get High-res Image Gene #47: 'amp_19p13.3' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.0151 (Fisher's exact test), Q value = 0.19
Table S102. Gene #48: 'amp_20p13' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 52(20P13) MUTATED | 5 | 4 | 4 | 1 | 0 | 0 |
AMP PEAK 52(20P13) WILD-TYPE | 277 | 48 | 105 | 1 | 46 | 6 |
Figure S102. Get High-res Image Gene #48: 'amp_20p13' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0201 (Fisher's exact test), Q value = 0.22
Table S103. Gene #48: 'amp_20p13' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 52(20P13) MUTATED | 8 | 1 |
AMP PEAK 52(20P13) WILD-TYPE | 216 | 224 |
Figure S103. Get High-res Image Gene #48: 'amp_20p13' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0153 (Fisher's exact test), Q value = 0.19
Table S104. Gene #48: 'amp_20p13' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 52(20P13) MUTATED | 0 | 6 | 8 | 0 |
AMP PEAK 52(20P13) WILD-TYPE | 9 | 350 | 90 | 36 |
Figure S104. Get High-res Image Gene #48: 'amp_20p13' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.00383 (Wilcoxon-test), Q value = 0.12
Table S105. Gene #48: 'amp_20p13' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 52(20P13) MUTATED | 8 | 0.0 (0.0) |
AMP PEAK 52(20P13) WILD-TYPE | 375 | 3.8 (6.3) |
Figure S105. Get High-res Image Gene #48: 'amp_20p13' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0108 (Fisher's exact test), Q value = 0.16
Table S106. Gene #49: 'amp_20q13.11' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
AMP PEAK 53(20Q13.11) MUTATED | 9 | 1 |
AMP PEAK 53(20Q13.11) WILD-TYPE | 215 | 224 |
Figure S106. Get High-res Image Gene #49: 'amp_20q13.11' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.00348 (Fisher's exact test), Q value = 0.11
Table S107. Gene #49: 'amp_20q13.11' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 53(20Q13.11) MUTATED | 0 | 5 | 9 | 0 |
AMP PEAK 53(20Q13.11) WILD-TYPE | 9 | 351 | 89 | 36 |
Figure S107. Get High-res Image Gene #49: 'amp_20q13.11' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.0102 (Fisher's exact test), Q value = 0.16
Table S108. Gene #49: 'amp_20q13.11' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 53(20Q13.11) MUTATED | 1 | 0 | 12 | 1 |
AMP PEAK 53(20Q13.11) WILD-TYPE | 131 | 18 | 318 | 0 |
Figure S108. Get High-res Image Gene #49: 'amp_20q13.11' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.00213 (Wilcoxon-test), Q value = 0.11
Table S109. Gene #49: 'amp_20q13.11' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 53(20Q13.11) MUTATED | 9 | 0.0 (0.0) |
AMP PEAK 53(20Q13.11) WILD-TYPE | 374 | 3.8 (6.3) |
Figure S109. Get High-res Image Gene #49: 'amp_20q13.11' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0215 (Wilcoxon-test), Q value = 0.22
Table S110. Gene #50: 'amp_20q13.2' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 54(20Q13.2) MUTATED | 14 | 56.6 (14.7) |
AMP PEAK 54(20Q13.2) WILD-TYPE | 485 | 46.9 (15.8) |
Figure S110. Get High-res Image Gene #50: 'amp_20q13.2' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.00353 (Fisher's exact test), Q value = 0.11
Table S111. Gene #50: 'amp_20q13.2' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 54(20Q13.2) MUTATED | 0 | 5 | 9 | 0 |
AMP PEAK 54(20Q13.2) WILD-TYPE | 9 | 351 | 89 | 36 |
Figure S111. Get High-res Image Gene #50: 'amp_20q13.2' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.00956 (Fisher's exact test), Q value = 0.16
Table S112. Gene #50: 'amp_20q13.2' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 54(20Q13.2) MUTATED | 1 | 0 | 12 | 1 |
AMP PEAK 54(20Q13.2) WILD-TYPE | 131 | 18 | 318 | 0 |
Figure S112. Get High-res Image Gene #50: 'amp_20q13.2' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.0224 (Wilcoxon-test), Q value = 0.23
Table S113. Gene #50: 'amp_20q13.2' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 54(20Q13.2) MUTATED | 9 | 1.0 (3.0) |
AMP PEAK 54(20Q13.2) WILD-TYPE | 374 | 3.7 (6.3) |
Figure S113. Get High-res Image Gene #50: 'amp_20q13.2' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00832 (Fisher's exact test), Q value = 0.16
Table S114. Gene #51: 'amp_20q13.2' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 55(20Q13.2) MUTATED | 4 | 4 | 4 | 1 | 0 | 0 |
AMP PEAK 55(20Q13.2) WILD-TYPE | 278 | 48 | 105 | 1 | 46 | 6 |
Figure S114. Get High-res Image Gene #51: 'amp_20q13.2' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.00402 (Fisher's exact test), Q value = 0.12
Table S115. Gene #51: 'amp_20q13.2' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
AMP PEAK 55(20Q13.2) MUTATED | 0 | 4 | 8 | 1 |
AMP PEAK 55(20Q13.2) WILD-TYPE | 9 | 352 | 90 | 35 |
Figure S115. Get High-res Image Gene #51: 'amp_20q13.2' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.0241 (Wilcoxon-test), Q value = 0.24
Table S116. Gene #51: 'amp_20q13.2' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 55(20Q13.2) MUTATED | 8 | 0.5 (1.4) |
AMP PEAK 55(20Q13.2) WILD-TYPE | 375 | 3.7 (6.3) |
Figure S116. Get High-res Image Gene #51: 'amp_20q13.2' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0137 (Fisher's exact test), Q value = 0.18
Table S117. Gene #53: 'amp_22q11.21' versus Clinical Feature #12: 'COMPLETENESS_OF_RESECTION'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 381 | 52 | 4 | 30 |
AMP PEAK 57(22Q11.21) MUTATED | 2 | 2 | 0 | 2 |
AMP PEAK 57(22Q11.21) WILD-TYPE | 379 | 50 | 4 | 28 |
Figure S117. Get High-res Image Gene #53: 'amp_22q11.21' versus Clinical Feature #12: 'COMPLETENESS_OF_RESECTION'

P value = 0.0126 (Wilcoxon-test), Q value = 0.17
Table S118. Gene #54: 'amp_xp22.12' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 58(XP22.12) MUTATED | 10 | 58.5 (10.2) |
AMP PEAK 58(XP22.12) WILD-TYPE | 489 | 46.9 (15.8) |
Figure S118. Get High-res Image Gene #54: 'amp_xp22.12' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.00267 (Fisher's exact test), Q value = 0.11
Table S119. Gene #54: 'amp_xp22.12' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 58(XP22.12) MUTATED | 2 | 4 | 2 | 1 | 1 | 0 |
AMP PEAK 58(XP22.12) WILD-TYPE | 280 | 48 | 107 | 1 | 45 | 6 |
Figure S119. Get High-res Image Gene #54: 'amp_xp22.12' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.017 (Fisher's exact test), Q value = 0.2
Table S120. Gene #54: 'amp_xp22.12' versus Clinical Feature #12: 'COMPLETENESS_OF_RESECTION'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 381 | 52 | 4 | 30 |
AMP PEAK 58(XP22.12) MUTATED | 5 | 2 | 0 | 3 |
AMP PEAK 58(XP22.12) WILD-TYPE | 376 | 50 | 4 | 27 |
Figure S120. Get High-res Image Gene #54: 'amp_xp22.12' versus Clinical Feature #12: 'COMPLETENESS_OF_RESECTION'

P value = 0.00487 (Wilcoxon-test), Q value = 0.14
Table S121. Gene #55: 'amp_xp11.4' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 59(XP11.4) MUTATED | 9 | 61.2 (10.9) |
AMP PEAK 59(XP11.4) WILD-TYPE | 490 | 46.9 (15.8) |
Figure S121. Get High-res Image Gene #55: 'amp_xp11.4' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.00836 (Fisher's exact test), Q value = 0.16
Table S122. Gene #55: 'amp_xp11.4' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
AMP PEAK 59(XP11.4) MUTATED | 2 | 3 | 2 | 1 | 1 | 0 |
AMP PEAK 59(XP11.4) WILD-TYPE | 280 | 49 | 107 | 1 | 45 | 6 |
Figure S122. Get High-res Image Gene #55: 'amp_xp11.4' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.019 (Fisher's exact test), Q value = 0.21
Table S123. Gene #55: 'amp_xp11.4' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 59(XP11.4) MUTATED | 1 | 0 | 7 | 1 |
AMP PEAK 59(XP11.4) WILD-TYPE | 131 | 18 | 323 | 0 |
Figure S123. Get High-res Image Gene #55: 'amp_xp11.4' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.0252 (Fisher's exact test), Q value = 0.24
Table S124. Gene #56: 'amp_xp11.22' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 60(XP11.22) MUTATED | 2 | 0 | 5 | 1 |
AMP PEAK 60(XP11.22) WILD-TYPE | 130 | 18 | 325 | 0 |
Figure S124. Get High-res Image Gene #56: 'amp_xp11.22' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.00831 (Wilcoxon-test), Q value = 0.16
Table S125. Gene #57: 'amp_xp11.22' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 61(XP11.22) MUTATED | 8 | 61.8 (12.3) |
AMP PEAK 61(XP11.22) WILD-TYPE | 491 | 46.9 (15.7) |
Figure S125. Get High-res Image Gene #57: 'amp_xp11.22' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.018 (Fisher's exact test), Q value = 0.2
Table S126. Gene #57: 'amp_xp11.22' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 61(XP11.22) MUTATED | 1 | 0 | 6 | 1 |
AMP PEAK 61(XP11.22) WILD-TYPE | 131 | 18 | 324 | 0 |
Figure S126. Get High-res Image Gene #57: 'amp_xp11.22' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.0228 (Wilcoxon-test), Q value = 0.23
Table S127. Gene #57: 'amp_xp11.22' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
AMP PEAK 61(XP11.22) MUTATED | 5 | 0.0 (0.0) |
AMP PEAK 61(XP11.22) WILD-TYPE | 378 | 3.7 (6.3) |
Figure S127. Get High-res Image Gene #57: 'amp_xp11.22' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00949 (Fisher's exact test), Q value = 0.16
Table S128. Gene #59: 'amp_xq21.2' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 63(XQ21.2) MUTATED | 1 | 1 | 6 | 1 |
AMP PEAK 63(XQ21.2) WILD-TYPE | 131 | 17 | 324 | 0 |
Figure S128. Get High-res Image Gene #59: 'amp_xq21.2' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.0148 (Fisher's exact test), Q value = 0.19
Table S129. Gene #60: 'amp_xq22.3' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 366 | 133 |
AMP PEAK 64(XQ22.3) MUTATED | 15 | 0 |
AMP PEAK 64(XQ22.3) WILD-TYPE | 351 | 133 |
Figure S129. Get High-res Image Gene #60: 'amp_xq22.3' versus Clinical Feature #7: 'GENDER'

P value = 0.00977 (Fisher's exact test), Q value = 0.16
Table S130. Gene #60: 'amp_xq22.3' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 64(XQ22.3) MUTATED | 1 | 0 | 13 | 1 |
AMP PEAK 64(XQ22.3) WILD-TYPE | 131 | 18 | 317 | 0 |
Figure S130. Get High-res Image Gene #60: 'amp_xq22.3' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.0189 (Fisher's exact test), Q value = 0.21
Table S131. Gene #61: 'amp_xq23' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 65(XQ23) MUTATED | 1 | 0 | 7 | 1 |
AMP PEAK 65(XQ23) WILD-TYPE | 131 | 18 | 323 | 0 |
Figure S131. Get High-res Image Gene #61: 'amp_xq23' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.0199 (Wilcoxon-test), Q value = 0.22
Table S132. Gene #64: 'amp_xq28' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
AMP PEAK 68(XQ28) MUTATED | 10 | 59.4 (16.2) |
AMP PEAK 68(XQ28) WILD-TYPE | 489 | 46.9 (15.7) |
Figure S132. Get High-res Image Gene #64: 'amp_xq28' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.00973 (Fisher's exact test), Q value = 0.16
Table S133. Gene #64: 'amp_xq28' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
AMP PEAK 68(XQ28) MUTATED | 1 | 1 | 7 | 1 |
AMP PEAK 68(XQ28) WILD-TYPE | 131 | 17 | 323 | 0 |
Figure S133. Get High-res Image Gene #64: 'amp_xq28' versus Clinical Feature #11: 'EXTRATHYROIDAL_EXTENSION'

P value = 0.0108 (Fisher's exact test), Q value = 0.16
Table S134. Gene #67: 'del_2p23.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 3(2P23.1) MUTATED | 9 | 1 |
DEL PEAK 3(2P23.1) WILD-TYPE | 215 | 224 |
Figure S134. Get High-res Image Gene #67: 'del_2p23.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.00338 (Fisher's exact test), Q value = 0.11
Table S135. Gene #67: 'del_2p23.1' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
DEL PEAK 3(2P23.1) MUTATED | 1 | 4 | 7 | 0 |
DEL PEAK 3(2P23.1) WILD-TYPE | 8 | 352 | 91 | 36 |
Figure S135. Get High-res Image Gene #67: 'del_2p23.1' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.0113 (Wilcoxon-test), Q value = 0.16
Table S136. Gene #67: 'del_2p23.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
DEL PEAK 3(2P23.1) MUTATED | 9 | 0.3 (1.0) |
DEL PEAK 3(2P23.1) WILD-TYPE | 374 | 3.8 (6.3) |
Figure S136. Get High-res Image Gene #67: 'del_2p23.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00733 (Fisher's exact test), Q value = 0.16
Table S137. Gene #68: 'del_2q22.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 4(2Q22.1) MUTATED | 7 | 0 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 217 | 225 |
Figure S137. Get High-res Image Gene #68: 'del_2q22.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.00533 (Fisher's exact test), Q value = 0.15
Table S138. Gene #68: 'del_2q22.1' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'
nPatients | OTHER SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 9 | 356 | 98 | 36 |
DEL PEAK 4(2Q22.1) MUTATED | 0 | 3 | 7 | 0 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 9 | 353 | 91 | 36 |
Figure S138. Get High-res Image Gene #68: 'del_2q22.1' versus Clinical Feature #8: 'HISTOLOGICAL_TYPE'

P value = 0.00691 (Wilcoxon-test), Q value = 0.16
Table S139. Gene #68: 'del_2q22.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
DEL PEAK 4(2Q22.1) MUTATED | 7 | 0.0 (0.0) |
DEL PEAK 4(2Q22.1) WILD-TYPE | 376 | 3.7 (6.3) |
Figure S139. Get High-res Image Gene #68: 'del_2q22.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0157 (Fisher's exact test), Q value = 0.19
Table S140. Gene #69: 'del_2q37.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 5(2Q37.3) MUTATED | 4 | 6 | 2 | 0 | 1 | 0 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 278 | 46 | 107 | 2 | 45 | 6 |
Figure S140. Get High-res Image Gene #69: 'del_2q37.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0201 (Fisher's exact test), Q value = 0.22
Table S141. Gene #69: 'del_2q37.3' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 5(2Q37.3) MUTATED | 8 | 1 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 216 | 224 |
Figure S141. Get High-res Image Gene #69: 'del_2q37.3' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0161 (Wilcoxon-test), Q value = 0.19
Table S142. Gene #69: 'del_2q37.3' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
DEL PEAK 5(2Q37.3) MUTATED | 8 | 0.2 (0.7) |
DEL PEAK 5(2Q37.3) WILD-TYPE | 375 | 3.8 (6.3) |
Figure S142. Get High-res Image Gene #69: 'del_2q37.3' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00192 (logrank test), Q value = 0.11
Table S143. Gene #72: 'del_6q22.31' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
DEL PEAK 11(6Q22.31) MUTATED | 6 | 2 | 7.8 - 98.6 (37.9) |
DEL PEAK 11(6Q22.31) WILD-TYPE | 491 | 12 | 0.1 - 169.3 (20.2) |
Figure S143. Get High-res Image Gene #72: 'del_6q22.31' versus Clinical Feature #1: 'Time to Death'

P value = 0.00963 (Wilcoxon-test), Q value = 0.16
Table S144. Gene #72: 'del_6q22.31' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 11(6Q22.31) MUTATED | 6 | 4.6 (1.2) |
DEL PEAK 11(6Q22.31) WILD-TYPE | 395 | 3.0 (1.6) |
Figure S144. Get High-res Image Gene #72: 'del_6q22.31' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.0164 (Fisher's exact test), Q value = 0.19
Table S145. Gene #77: 'del_8q24.22' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 366 | 133 |
DEL PEAK 17(8Q24.22) MUTATED | 2 | 5 |
DEL PEAK 17(8Q24.22) WILD-TYPE | 364 | 128 |
Figure S145. Get High-res Image Gene #77: 'del_8q24.22' versus Clinical Feature #7: 'GENDER'

P value = 0.00912 (Wilcoxon-test), Q value = 0.16
Table S146. Gene #78: 'del_9p21.3' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
DEL PEAK 18(9P21.3) MUTATED | 20 | 56.8 (16.0) |
DEL PEAK 18(9P21.3) WILD-TYPE | 479 | 46.8 (15.7) |
Figure S146. Get High-res Image Gene #78: 'del_9p21.3' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.00033 (Fisher's exact test), Q value = 0.042
Table S147. Gene #78: 'del_9p21.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 18(9P21.3) MUTATED | 7 | 5 | 4 | 2 | 1 | 1 |
DEL PEAK 18(9P21.3) WILD-TYPE | 275 | 47 | 105 | 0 | 45 | 5 |
Figure S147. Get High-res Image Gene #78: 'del_9p21.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.000578 (Wilcoxon-test), Q value = 0.064
Table S148. Gene #79: 'del_9q22.33' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
DEL PEAK 19(9Q22.33) MUTATED | 27 | 59.2 (19.0) |
DEL PEAK 19(9Q22.33) WILD-TYPE | 472 | 46.5 (15.3) |
Figure S148. Get High-res Image Gene #79: 'del_9q22.33' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 3e-04 (Fisher's exact test), Q value = 0.042
Table S149. Gene #79: 'del_9q22.33' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 19(9Q22.33) MUTATED | 10 | 5 | 4 | 2 | 5 | 1 |
DEL PEAK 19(9Q22.33) WILD-TYPE | 272 | 47 | 105 | 0 | 41 | 5 |
Figure S149. Get High-res Image Gene #79: 'del_9q22.33' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0209 (Wilcoxon-test), Q value = 0.22
Table S150. Gene #79: 'del_9q22.33' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 19(9Q22.33) MUTATED | 23 | 3.8 (1.9) |
DEL PEAK 19(9Q22.33) WILD-TYPE | 378 | 2.9 (1.6) |
Figure S150. Get High-res Image Gene #79: 'del_9q22.33' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.0149 (Fisher's exact test), Q value = 0.19
Table S151. Gene #80: 'del_10p12.31' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 20(10P12.31) MUTATED | 6 | 0 |
DEL PEAK 20(10P12.31) WILD-TYPE | 218 | 225 |
Figure S151. Get High-res Image Gene #80: 'del_10p12.31' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.0228 (Wilcoxon-test), Q value = 0.23
Table S152. Gene #80: 'del_10p12.31' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
DEL PEAK 20(10P12.31) MUTATED | 5 | 0.0 (0.0) |
DEL PEAK 20(10P12.31) WILD-TYPE | 378 | 3.7 (6.3) |
Figure S152. Get High-res Image Gene #80: 'del_10p12.31' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.0108 (Fisher's exact test), Q value = 0.16
Table S153. Gene #82: 'del_10q23.31' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 22(10Q23.31) MUTATED | 9 | 1 |
DEL PEAK 22(10Q23.31) WILD-TYPE | 215 | 224 |
Figure S153. Get High-res Image Gene #82: 'del_10q23.31' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.00253 (Wilcoxon-test), Q value = 0.11
Table S154. Gene #82: 'del_10q23.31' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 22(10Q23.31) MUTATED | 9 | 4.6 (1.5) |
DEL PEAK 22(10Q23.31) WILD-TYPE | 392 | 2.9 (1.6) |
Figure S154. Get High-res Image Gene #82: 'del_10q23.31' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.00266 (logrank test), Q value = 0.11
Table S155. Gene #83: 'del_11p15.1' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 497 | 14 | 0.1 - 169.3 (20.4) |
DEL PEAK 23(11P15.1) MUTATED | 7 | 1 | 1.4 - 44.1 (20.6) |
DEL PEAK 23(11P15.1) WILD-TYPE | 490 | 13 | 0.1 - 169.3 (20.3) |
Figure S155. Get High-res Image Gene #83: 'del_11p15.1' versus Clinical Feature #1: 'Time to Death'

P value = 0.000665 (Wilcoxon-test), Q value = 0.065
Table S156. Gene #83: 'del_11p15.1' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
DEL PEAK 23(11P15.1) MUTATED | 7 | 68.1 (8.7) |
DEL PEAK 23(11P15.1) WILD-TYPE | 492 | 46.9 (15.7) |
Figure S156. Get High-res Image Gene #83: 'del_11p15.1' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.00582 (Fisher's exact test), Q value = 0.15
Table S157. Gene #83: 'del_11p15.1' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 23(11P15.1) MUTATED | 1 | 1 | 4 | 1 | 0 | 0 |
DEL PEAK 23(11P15.1) WILD-TYPE | 281 | 51 | 105 | 1 | 46 | 6 |
Figure S157. Get High-res Image Gene #83: 'del_11p15.1' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0164 (Fisher's exact test), Q value = 0.19
Table S158. Gene #83: 'del_11p15.1' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 366 | 133 |
DEL PEAK 23(11P15.1) MUTATED | 2 | 5 |
DEL PEAK 23(11P15.1) WILD-TYPE | 364 | 128 |
Figure S158. Get High-res Image Gene #83: 'del_11p15.1' versus Clinical Feature #7: 'GENDER'

P value = 0.00797 (Wilcoxon-test), Q value = 0.16
Table S159. Gene #83: 'del_11p15.1' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 23(11P15.1) MUTATED | 7 | 4.9 (1.9) |
DEL PEAK 23(11P15.1) WILD-TYPE | 394 | 2.9 (1.6) |
Figure S159. Get High-res Image Gene #83: 'del_11p15.1' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.00641 (Wilcoxon-test), Q value = 0.15
Table S160. Gene #84: 'del_13q12.13' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.2 (15.8) |
DEL PEAK 24(13Q12.13) MUTATED | 18 | 58.1 (16.5) |
DEL PEAK 24(13Q12.13) WILD-TYPE | 481 | 46.8 (15.6) |
Figure S160. Get High-res Image Gene #84: 'del_13q12.13' versus Clinical Feature #2: 'YEARS_TO_BIRTH'

P value = 0.00273 (Fisher's exact test), Q value = 0.11
Table S161. Gene #84: 'del_13q12.13' versus Clinical Feature #10: 'RADIATION_EXPOSURE'
nPatients | NO | YES |
---|---|---|
ALL | 421 | 17 |
DEL PEAK 24(13Q12.13) MUTATED | 13 | 4 |
DEL PEAK 24(13Q12.13) WILD-TYPE | 408 | 13 |
Figure S161. Get High-res Image Gene #84: 'del_13q12.13' versus Clinical Feature #10: 'RADIATION_EXPOSURE'

P value = 0.0112 (Fisher's exact test), Q value = 0.16
Table S162. Gene #85: 'del_13q22.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 224 | 225 |
DEL PEAK 25(13Q22.1) MUTATED | 13 | 3 |
DEL PEAK 25(13Q22.1) WILD-TYPE | 211 | 222 |
Figure S162. Get High-res Image Gene #85: 'del_13q22.1' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'

P value = 0.00273 (Fisher's exact test), Q value = 0.11
Table S163. Gene #85: 'del_13q22.1' versus Clinical Feature #10: 'RADIATION_EXPOSURE'
nPatients | NO | YES |
---|---|---|
ALL | 421 | 17 |
DEL PEAK 25(13Q22.1) MUTATED | 13 | 4 |
DEL PEAK 25(13Q22.1) WILD-TYPE | 408 | 13 |
Figure S163. Get High-res Image Gene #85: 'del_13q22.1' versus Clinical Feature #10: 'RADIATION_EXPOSURE'

P value = 0.0252 (Wilcoxon-test), Q value = 0.24
Table S164. Gene #85: 'del_13q22.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 383 | 3.7 (6.2) |
DEL PEAK 25(13Q22.1) MUTATED | 13 | 1.0 (2.3) |
DEL PEAK 25(13Q22.1) WILD-TYPE | 370 | 3.8 (6.3) |
Figure S164. Get High-res Image Gene #85: 'del_13q22.1' versus Clinical Feature #13: 'NUMBER_OF_LYMPH_NODES'

P value = 0.00222 (Fisher's exact test), Q value = 0.11
Table S165. Gene #87: 'del_16q23.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 29(16Q23.3) MUTATED | 0 | 0 | 3 | 0 | 2 | 1 |
DEL PEAK 29(16Q23.3) WILD-TYPE | 282 | 52 | 106 | 2 | 44 | 5 |
Figure S165. Get High-res Image Gene #87: 'del_16q23.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.0156 (Fisher's exact test), Q value = 0.19
Table S166. Gene #87: 'del_16q23.3' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 141 | 166 | 167 | 23 |
DEL PEAK 29(16Q23.3) MUTATED | 0 | 1 | 3 | 2 |
DEL PEAK 29(16Q23.3) WILD-TYPE | 141 | 165 | 164 | 21 |
Figure S166. Get High-res Image Gene #87: 'del_16q23.3' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'

P value = 0.0186 (Fisher's exact test), Q value = 0.21
Table S167. Gene #88: 'del_17p13.1' versus Clinical Feature #9: 'RADIATIONS_RADIATION_REGIMENINDICATION'
nPatients | NO | YES |
---|---|---|
ALL | 14 | 485 |
DEL PEAK 30(17P13.1) MUTATED | 2 | 6 |
DEL PEAK 30(17P13.1) WILD-TYPE | 12 | 479 |
Figure S167. Get High-res Image Gene #88: 'del_17p13.1' versus Clinical Feature #9: 'RADIATIONS_RADIATION_REGIMENINDICATION'

P value = 0.0149 (Wilcoxon-test), Q value = 0.19
Table S168. Gene #88: 'del_17p13.1' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 30(17P13.1) MUTATED | 7 | 4.5 (1.6) |
DEL PEAK 30(17P13.1) WILD-TYPE | 394 | 3.0 (1.6) |
Figure S168. Get High-res Image Gene #88: 'del_17p13.1' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.0029 (Wilcoxon-test), Q value = 0.11
Table S169. Gene #90: 'del_19p13.2' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 32(19P13.2) MUTATED | 4 | 5.8 (0.6) |
DEL PEAK 32(19P13.2) WILD-TYPE | 397 | 3.0 (1.6) |
Figure S169. Get High-res Image Gene #90: 'del_19p13.2' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.00805 (Wilcoxon-test), Q value = 0.16
Table S170. Gene #91: 'del_19p13.12' versus Clinical Feature #15: 'TUMOR_SIZE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
DEL PEAK 33(19P13.12) MUTATED | 5 | 5.2 (1.6) |
DEL PEAK 33(19P13.12) WILD-TYPE | 396 | 3.0 (1.6) |
Figure S170. Get High-res Image Gene #91: 'del_19p13.12' versus Clinical Feature #15: 'TUMOR_SIZE'

P value = 0.00792 (Fisher's exact test), Q value = 0.16
Table S171. Gene #92: 'del_21q21.1' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 36(21Q21.1) MUTATED | 1 | 4 | 2 | 0 | 2 | 0 |
DEL PEAK 36(21Q21.1) WILD-TYPE | 281 | 48 | 107 | 2 | 44 | 6 |
Figure S171. Get High-res Image Gene #92: 'del_21q21.1' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.00096 (Fisher's exact test), Q value = 0.08
Table S172. Gene #97: 'del_xq23' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 41(XQ23) MUTATED | 0 | 4 | 0 | 0 | 0 | 0 |
DEL PEAK 41(XQ23) WILD-TYPE | 282 | 48 | 109 | 2 | 46 | 6 |
Figure S172. Get High-res Image Gene #97: 'del_xq23' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

P value = 0.00118 (Fisher's exact test), Q value = 0.082
Table S173. Gene #98: 'del_xq22.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 52 | 109 | 2 | 46 | 6 |
DEL PEAK 42(XQ22.3) MUTATED | 0 | 4 | 0 | 0 | 0 | 0 |
DEL PEAK 42(XQ22.3) WILD-TYPE | 282 | 48 | 109 | 2 | 46 | 6 |
Figure S173. Get High-res Image Gene #98: 'del_xq22.3' versus Clinical Feature #3: 'NEOPLASM_DISEASESTAGE'

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Copy number data file = all_lesions.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/THCA-TP/15101913/transformed.cor.cli.txt
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Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/THCA-TP/15092795/THCA-TP.merged_data.txt
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Number of patients = 499
-
Number of significantly focal cnvs = 98
-
Number of selected clinical features = 17
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Exclude genes that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.