[1] "ofn"        "-oTUCEC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCEC-TP/15120652/UCEC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCEC-TP/15106279/transformed.cor.cli.txt"

nPatients in clinical file=547, in cluster file=539, common to both=539
[1] 100 539
[1] "AMP PEAK  1(1P35.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           56                           483 
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           56                           483 
[1] "AMP PEAK  2(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           73                           466 
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           73                           466 
[1] "AMP PEAK  3(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE 
                           96                           443 
  AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE 
                           96                           443 
[1] "AMP PEAK  4(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE 
                          242                           297 
  AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE 
                          242                           297 
[1] "AMP PEAK  5(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE 
                        256                         283 
  AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE 
                        256                         283 
[1] "AMP PEAK  6(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE 
                        218                         321 
  AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE 
                        218                         321 
[1] "AMP PEAK  7(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE 
                          121                           418 
  AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE 
                          121                           418 
[1] "AMP PEAK  8(2Q13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE 
                        119                         420 
  AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE 
                        119                         420 
[1] "AMP PEAK  9(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE 
                           82                           457 
  AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE 
                           82                           457 
[1] "AMP PEAK 10(3P14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                           65                           474 
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                           65                           474 
[1] "AMP PEAK 11(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          175                           364 
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          175                           364 
[1] "AMP PEAK 12(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE 
                          164                           375 
  AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE 
                          164                           375 
[1] "AMP PEAK 13(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE 
                           53                           486 
  AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE 
                           53                           486 
[1] "AMP PEAK 14(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE 
                            89                            450 
  AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE 
                            89                            450 
[1] "AMP PEAK 15(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE 
                           57                           482 
  AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE 
                           57                           482 
[1] "AMP PEAK 16(6P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE 
                          117                           422 
  AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE 
                          117                           422 
[1] "AMP PEAK 17(6P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE 
                          107                           432 
  AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE 
                          107                           432 
[1] "AMP PEAK 18(6Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE 
                           88                           451 
  AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE 
                           88                           451 
[1] "AMP PEAK 19(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE 
                           93                           446 
  AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE 
                           93                           446 
[1] "AMP PEAK 20(8P11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE 
                           126                            413 
  AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE 
                           126                            413 
[1] "AMP PEAK 21(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE 
                           162                            377 
  AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE 
                           162                            377 
[1] "AMP PEAK 22(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE 
                           209                            330 
  AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE 
                           209                            330 
[1] "AMP PEAK 23(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE 
                           215                            324 
  AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE 
                           215                            324 
[1] "AMP PEAK 24(9P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE 
                           65                           474 
  AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE 
                           65                           474 
[1] "AMP PEAK 25(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE 
                           39                           500 
  AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE 
                           39                           500 
[1] "AMP PEAK 26(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE 
                           143                            396 
  AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE 
                           143                            396 
[1] "AMP PEAK 27(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE 
                            51                            488 
  AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE 
                            51                            488 
[1] "AMP PEAK 28(11Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE 
                            74                            465 
  AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE 
                            74                            465 
[1] "AMP PEAK 29(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE 
                            59                            480 
  AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE 
                            59                            480 
[1] "AMP PEAK 30(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE 
                            93                            446 
  AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE 
                            93                            446 
[1] "AMP PEAK 31(12Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE 
                             87                             452 
  AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE 
                             87                             452 
[1] "AMP PEAK 32(12Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE 
                           100                            439 
  AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE 
                           100                            439 
[1] "AMP PEAK 33(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE 
                          58                          481 
  AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE 
                          58                          481 
[1] "AMP PEAK 34(14Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE 
                            64                            475 
  AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE 
                            64                            475 
[1] "AMP PEAK 35(14Q32.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE 
                             79                             460 
  AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE 
                             79                             460 
[1] "AMP PEAK 36(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE 
                            38                            501 
  AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE 
                            38                            501 
[1] "AMP PEAK 37(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE 
                            66                            473 
  AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE 
                            66                            473 
[1] "AMP PEAK 38(17Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE 
                            71                            468 
  AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE 
                            71                            468 
[1] "AMP PEAK 39(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE 
                          75                          464 
  AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE 
                          75                          464 
[1] "AMP PEAK 40(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE 
                           105                            434 
  AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE 
                           105                            434 
[1] "AMP PEAK 41(18P11.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE 
                             96                             443 
  AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE 
                             96                             443 
[1] "AMP PEAK 42(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE 
                            69                            470 
  AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE 
                            69                            470 
[1] "AMP PEAK 43(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE 
                            99                            440 
  AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE 
                            99                            440 
[1] "AMP PEAK 44(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE 
                         121                          418 
  AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE 
                         121                          418 
[1] "AMP PEAK 45(20P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE 
                         117                          422 
  AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE 
                         117                          422 
[1] "AMP PEAK 46(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE 
                            152                             387 
  AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE 
                            152                             387 
[1] "AMP PEAK 47(20Q13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE 
                            152                             387 
  AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE 
                            152                             387 
[1] "AMP PEAK 48(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE 
                            153                             386 
  AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE 
                            153                             386 
[1] "AMP PEAK 49(22Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE 
                            62                            477 
  AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE 
                            62                            477 
[1] "AMP PEAK 50(XP11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE 
                            90                            449 
  AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE 
                            90                            449 
[1] "AMP PEAK 51(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE 
                         93                         446 
  AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE 
                         93                         446 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            71                            468 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            71                            468 
[1] "DEL PEAK  2(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            83                            456 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            83                            456 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           26                           513 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           26                           513 
[1] "DEL PEAK  4(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           48                           491 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           48                           491 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           53                           486 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           53                           486 
[1] "DEL PEAK  6(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           79                           460 
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           79                           460 
[1] "DEL PEAK  7(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            43                            496 
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            43                            496 
[1] "DEL PEAK  8(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                           94                           445 
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                           94                           445 
[1] "DEL PEAK  9(4P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE 
                           98                           441 
  DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE 
                           98                           441 
[1] "DEL PEAK 10(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          106                           433 
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          106                           433 
[1] "DEL PEAK 11(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                          130                           409 
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                          130                           409 
[1] "DEL PEAK 12(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          111                           428 
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          111                           428 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         46                         493 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         46                         493 
[1] "DEL PEAK 14(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           72                           467 
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           72                           467 
[1] "DEL PEAK 15(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                            41                            498 
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                            41                            498 
[1] "DEL PEAK 16(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE 
                           55                           484 
  DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE 
                           55                           484 
[1] "DEL PEAK 17(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE 
                           63                           476 
  DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE 
                           63                           476 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          119                           420 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          119                           420 
[1] "DEL PEAK 19(8P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE 
                          117                           422 
  DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE 
                          117                           422 
[1] "DEL PEAK 20(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         79                         460 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         79                         460 
[1] "DEL PEAK 21(9Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE 
                          129                           410 
  DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE 
                          129                           410 
[1] "DEL PEAK 22(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE 
                          132                           407 
  DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE 
                          132                           407 
[1] "DEL PEAK 23(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                             77                             462 
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                             77                             462 
[1] "DEL PEAK 24(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE 
                           106                            433 
  DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE 
                           106                            433 
[1] "DEL PEAK 25(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                            70                            469 
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                            70                            469 
[1] "DEL PEAK 26(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                          93                          446 
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                          93                          446 
[1] "DEL PEAK 27(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                            56                            483 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                            56                            483 
[1] "DEL PEAK 28(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                             66                             473 
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                             66                             473 
[1] "DEL PEAK 29(13Q11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE 
                          98                          441 
  DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE 
                          98                          441 
[1] "DEL PEAK 30(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           107                            432 
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           107                            432 
[1] "DEL PEAK 31(14Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE 
                            73                            466 
  DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE 
                            73                            466 
[1] "DEL PEAK 32(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                           140                            399 
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                           140                            399 
[1] "DEL PEAK 33(15Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE 
                         115                          424 
  DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE 
                         115                          424 
[1] "DEL PEAK 34(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            92                            447 
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            92                            447 
[1] "DEL PEAK 35(16Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE 
                         154                          385 
  DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE 
                         154                          385 
[1] "DEL PEAK 36(16Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE 
                           158                            381 
  DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE 
                           158                            381 
[1] "DEL PEAK 37(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                           166                            373 
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                           166                            373 
[1] "DEL PEAK 38(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE 
                           122                            417 
  DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE 
                           122                            417 
[1] "DEL PEAK 39(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE 
                           128                            411 
  DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE 
                           128                            411 
[1] "DEL PEAK 40(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                           105                            434 
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                           105                            434 
[1] "DEL PEAK 41(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE 
                            114                             425 
  DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE 
                            114                             425 
[1] "DEL PEAK 42(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                            91                            448 
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                            91                            448 
[1] "DEL PEAK 43(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE 
                          98                          441 
  DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE 
                          98                          441 
[1] "DEL PEAK 44(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           154                            385 
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           154                            385 
[1] "DEL PEAK 45(19P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                          58                          481 
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                          58                          481 
[1] "DEL PEAK 46(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE 
                             67                             472 
  DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE 
                             67                             472 
[1] "DEL PEAK 47(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            36                            503 
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            36                            503 
[1] "DEL PEAK 48(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE 
                            141                             398 
  DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE 
                            141                             398 
[1] "DEL PEAK 49(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE 
                           88                           451 
  DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE 
                           88                           451 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 539 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 539 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED        1      5      0      0
  AMP PEAK  1(1P35.2) WILD-TYPE     13     12     12     10
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P35.2) MUTATED        1      5      0      0      0
  AMP PEAK  1(1P35.2) WILD-TYPE     13      4      7      7     16
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P35.2) MUTATED       54      0      1      0      1
  AMP PEAK  1(1P35.2) WILD-TYPE    115    305     18      9     36
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          54                           115
  CLUS_2                           0                           305
  CLUS_3                           1                            18
  CLUS_4                           0                             9
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       35      4      6
  AMP PEAK  1(1P35.2) WILD-TYPE    130     85    165
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          35                           130
  CLUS_2                           4                            85
  CLUS_3                           6                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P35.2) MUTATED        2     10      2      0      0      3
  AMP PEAK  1(1P35.2) WILD-TYPE     39     27     37     12     41     21
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                          10                            27
  CLUS_3                           2                            37
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED        8      5      1      3
  AMP PEAK  1(1P35.2) WILD-TYPE     59     62     42     14
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                           5                            62
  CLUS_3                           1                            42
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       49      0      6
  AMP PEAK  1(1P35.2) WILD-TYPE    185    153    144
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          49                           185
  CLUS_2                           0                           153
  CLUS_3                           6                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P35.2) MUTATED       36      0      7      0      7      5
  AMP PEAK  1(1P35.2) WILD-TYPE     87     53     40     65    101     61
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P35.2) MUTATED        0
  AMP PEAK  1(1P35.2) WILD-TYPE     75
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          36                            87
  CLUS_2                           0                            53
  CLUS_3                           7                            40
  CLUS_4                           0                            65
  CLUS_5                           7                           101
  CLUS_6                           5                            61
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       42      6      5
  AMP PEAK  1(1P35.2) WILD-TYPE    181    144    152
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          42                           181
  CLUS_2                           6                           144
  CLUS_3                           5                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED       18      0      5     30
  AMP PEAK  1(1P35.2) WILD-TYPE    201     58    132     86
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          18                           201
  CLUS_2                           0                            58
  CLUS_3                           5                           132
  CLUS_4                          30                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       26      6     10
  AMP PEAK  1(1P35.2) WILD-TYPE    146     90    120
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          26                           146
  CLUS_2                           6                            90
  CLUS_3                          10                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       28      6      8
  AMP PEAK  1(1P35.2) WILD-TYPE    116    109    131
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          28                           116
  CLUS_2                           6                           109
  CLUS_3                           8                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1P34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED        1      6      0      0
  AMP PEAK  2(1P34.2) WILD-TYPE     13     11     12     10
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED        2      5      0      0      0
  AMP PEAK  2(1P34.2) WILD-TYPE     12      4      7      7     16
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED       71      0      1      0      1
  AMP PEAK  2(1P34.2) WILD-TYPE     98    305     18      9     36
D2V3, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          71                            98
  CLUS_2                           0                           305
  CLUS_3                           1                            18
  CLUS_4                           0                             9
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       48     10      5
  AMP PEAK  2(1P34.2) WILD-TYPE    117     79    166
D2V4, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          48                           117
  CLUS_2                          10                            79
  CLUS_3                           5                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P34.2) MUTATED        2      7      2      0      0      3
  AMP PEAK  2(1P34.2) WILD-TYPE     39     30     37     12     41     21
D2V5, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           7                            30
  CLUS_3                           2                            37
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED        7      3      1      3
  AMP PEAK  2(1P34.2) WILD-TYPE     60     64     42     14
D2V6, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           7                            60
  CLUS_2                           3                            64
  CLUS_3                           1                            42
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       65      1      6
  AMP PEAK  2(1P34.2) WILD-TYPE    169    152    144
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          65                           169
  CLUS_2                           1                           152
  CLUS_3                           6                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P34.2) MUTATED       49      0     10      0      8      5
  AMP PEAK  2(1P34.2) WILD-TYPE     74     53     37     65    100     61
                               vv
clus                            CLUS_7
  AMP PEAK  2(1P34.2) MUTATED        0
  AMP PEAK  2(1P34.2) WILD-TYPE     75
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          49                            74
  CLUS_2                           0                            53
  CLUS_3                          10                            37
  CLUS_4                           0                            65
  CLUS_5                           8                           100
  CLUS_6                           5                            61
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       61      6      4
  AMP PEAK  2(1P34.2) WILD-TYPE    162    144    153
D2V9, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          61                           162
  CLUS_2                           6                           144
  CLUS_3                           4                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED       23      0      4     44
  AMP PEAK  2(1P34.2) WILD-TYPE    196     58    133     72
D2V10, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          23                           196
  CLUS_2                           0                            58
  CLUS_3                           4                           133
  CLUS_4                          44                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       38     10     11
  AMP PEAK  2(1P34.2) WILD-TYPE    134     86    119
D2V11, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          38                           134
  CLUS_2                          10                            86
  CLUS_3                          11                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       39      5     15
  AMP PEAK  2(1P34.2) WILD-TYPE    105    110    124
D2V12, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          39                           105
  CLUS_2                           5                           110
  CLUS_3                          15                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P22.3) MUTATED        5      5      0      0
  AMP PEAK  3(1P22.3) WILD-TYPE      9     12     12     10
D3V1, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1P22.3) MUTATED        2      4      1      3      0
  AMP PEAK  3(1P22.3) WILD-TYPE     12      5      6      4     16
D3V2, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           3                             4
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1P22.3) MUTATED       53     30      2      7      4
  AMP PEAK  3(1P22.3) WILD-TYPE    116    275     17      2     33
D3V3, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          53                           116
  CLUS_2                          30                           275
  CLUS_3                           2                            17
  CLUS_4                           7                             2
  CLUS_5                           4                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       44      8     24
  AMP PEAK  3(1P22.3) WILD-TYPE    121     81    147
D3V4, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          44                           121
  CLUS_2                           8                            81
  CLUS_3                          24                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1P22.3) MUTATED        4      6      7      1      7      3
  AMP PEAK  3(1P22.3) WILD-TYPE     37     31     32     11     34     21
D3V5, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           6                            31
  CLUS_3                           7                            32
  CLUS_4                           1                            11
  CLUS_5                           7                            34
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P22.3) MUTATED        8     11      6      3
  AMP PEAK  3(1P22.3) WILD-TYPE     59     56     37     14
D3V6, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                          11                            56
  CLUS_3                           6                            37
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       60     27      8
  AMP PEAK  3(1P22.3) WILD-TYPE    174    126    142
D3V7, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          60                           174
  CLUS_2                          27                           126
  CLUS_3                           8                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1P22.3) MUTATED       42      7      8     18     13      4
  AMP PEAK  3(1P22.3) WILD-TYPE     81     46     39     47     95     62
                               vv
clus                            CLUS_7
  AMP PEAK  3(1P22.3) MUTATED        3
  AMP PEAK  3(1P22.3) WILD-TYPE     72
D3V8, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          42                            81
  CLUS_2                           7                            46
  CLUS_3                           8                            39
  CLUS_4                          18                            47
  CLUS_5                          13                            95
  CLUS_6                           4                            62
  CLUS_7                           3                            72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       52     36      7
  AMP PEAK  3(1P22.3) WILD-TYPE    171    114    150
D3V9, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          52                           171
  CLUS_2                          36                           114
  CLUS_3                           7                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P22.3) MUTATED       42      8     10     35
  AMP PEAK  3(1P22.3) WILD-TYPE    177     50    127     81
D3V10, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          42                           177
  CLUS_2                           8                            50
  CLUS_3                          10                           127
  CLUS_4                          35                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       48     13     14
  AMP PEAK  3(1P22.3) WILD-TYPE    124     83    116
D3V11, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          48                           124
  CLUS_2                          13                            83
  CLUS_3                          14                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       46      8     21
  AMP PEAK  3(1P22.3) WILD-TYPE     98    107    118
D3V12, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          46                            98
  CLUS_2                           8                           107
  CLUS_3                          21                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q21.3) MUTATED       11     12      5      2
  AMP PEAK  4(1Q21.3) WILD-TYPE      3      5      7      8
D4V1, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          11                             3
  CLUS_2                          12                             5
  CLUS_3                           5                             7
  CLUS_4                           2                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q21.3) MUTATED        9      7      6      5      3
  AMP PEAK  4(1Q21.3) WILD-TYPE      5      2      1      2     13
D4V2, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           7                             2
  CLUS_3                           6                             1
  CLUS_4                           5                             2
  CLUS_5                           3                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q21.3) MUTATED      105     90     13      9     25
  AMP PEAK  4(1Q21.3) WILD-TYPE     64    215      6      0     12
D4V3, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                         105                            64
  CLUS_2                          90                           215
  CLUS_3                          13                             6
  CLUS_4                           9                             0
  CLUS_5                          25                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       92     31     62
  AMP PEAK  4(1Q21.3) WILD-TYPE     73     58    109
D4V4, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          92                            73
  CLUS_2                          31                            58
  CLUS_3                          62                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(1Q21.3) MUTATED       14     15     17      8     19      8
  AMP PEAK  4(1Q21.3) WILD-TYPE     27     22     22      4     22     16
D4V5, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          14                            27
  CLUS_2                          15                            22
  CLUS_3                          17                            22
  CLUS_4                           8                             4
  CLUS_5                          19                            22
  CLUS_6                           8                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q21.3) MUTATED       24     28     23      6
  AMP PEAK  4(1Q21.3) WILD-TYPE     43     39     20     11
D4V6, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          24                            43
  CLUS_2                          28                            39
  CLUS_3                          23                            20
  CLUS_4                           6                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED      128     72     42
  AMP PEAK  4(1Q21.3) WILD-TYPE    106     81    108
D4V7, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                         128                           106
  CLUS_2                          72                            81
  CLUS_3                          42                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(1Q21.3) MUTATED       81     28     22     32     40     18
  AMP PEAK  4(1Q21.3) WILD-TYPE     42     25     25     33     68     48
                               vv
clus                            CLUS_7
  AMP PEAK  4(1Q21.3) MUTATED       21
  AMP PEAK  4(1Q21.3) WILD-TYPE     54
D4V8, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          81                            42
  CLUS_2                          28                            25
  CLUS_3                          22                            25
  CLUS_4                          32                            33
  CLUS_5                          40                            68
  CLUS_6                          18                            48
  CLUS_7                          21                            54
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED      113     83     43
  AMP PEAK  4(1Q21.3) WILD-TYPE    110     67    114
D4V9, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                         113                           110
  CLUS_2                          83                            67
  CLUS_3                          43                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q21.3) MUTATED       94     28     43     74
  AMP PEAK  4(1Q21.3) WILD-TYPE    125     30     94     42
D4V10, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          94                           125
  CLUS_2                          28                            30
  CLUS_3                          43                            94
  CLUS_4                          74                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       94     40     47
  AMP PEAK  4(1Q21.3) WILD-TYPE     78     56     83
D4V11, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          94                            78
  CLUS_2                          40                            56
  CLUS_3                          47                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       88     37     56
  AMP PEAK  4(1Q21.3) WILD-TYPE     56     78     83
D4V12, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          88                            56
  CLUS_2                          37                            78
  CLUS_3                          56                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q22) MUTATED       11     11      5      2
  AMP PEAK  5(1Q22) WILD-TYPE      3      6      7      8
D5V1, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        11                           3
  CLUS_2                        11                           6
  CLUS_3                         5                           7
  CLUS_4                         2                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(1Q22) MUTATED        9      6      6      5      3
  AMP PEAK  5(1Q22) WILD-TYPE      5      3      1      2     13
D5V2, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         6                           3
  CLUS_3                         6                           1
  CLUS_4                         5                           2
  CLUS_5                         3                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(1Q22) MUTATED      116     93     13      9     25
  AMP PEAK  5(1Q22) WILD-TYPE     53    212      6      0     12
D5V3, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       116                          53
  CLUS_2                        93                         212
  CLUS_3                        13                           6
  CLUS_4                         9                           0
  CLUS_5                        25                          12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED      100     34     63
  AMP PEAK  5(1Q22) WILD-TYPE     65     55    108
D5V4, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       100                          65
  CLUS_2                        34                          55
  CLUS_3                        63                         108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(1Q22) MUTATED       13     19     19      8     19      8
  AMP PEAK  5(1Q22) WILD-TYPE     28     18     20      4     22     16
D5V5, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        13                          28
  CLUS_2                        19                          18
  CLUS_3                        19                          20
  CLUS_4                         8                           4
  CLUS_5                        19                          22
  CLUS_6                         8                          16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q22) MUTATED       26     29     25      6
  AMP PEAK  5(1Q22) WILD-TYPE     41     38     18     11
D5V6, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        26                          41
  CLUS_2                        29                          38
  CLUS_3                        25                          18
  CLUS_4                         6                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED      137     73     46
  AMP PEAK  5(1Q22) WILD-TYPE     97     80    104
D5V7, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       137                          97
  CLUS_2                        73                          80
  CLUS_3                        46                         104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  5(1Q22) MUTATED       88     28     23     33     41     20     23
  AMP PEAK  5(1Q22) WILD-TYPE     35     25     24     32     67     46     52
D5V8, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        88                          35
  CLUS_2                        28                          25
  CLUS_3                        23                          24
  CLUS_4                        33                          32
  CLUS_5                        41                          67
  CLUS_6                        20                          46
  CLUS_7                        23                          52
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED      121     84     48
  AMP PEAK  5(1Q22) WILD-TYPE    102     66    109
D5V9, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       121                         102
  CLUS_2                        84                          66
  CLUS_3                        48                         109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q22) MUTATED       93     29     48     83
  AMP PEAK  5(1Q22) WILD-TYPE    126     29     89     33
D5V10, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        93                         126
  CLUS_2                        29                          29
  CLUS_3                        48                          89
  CLUS_4                        83                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       95     44     54
  AMP PEAK  5(1Q22) WILD-TYPE     77     52     76
D5V11, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        95                          77
  CLUS_2                        44                          52
  CLUS_3                        54                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       89     42     62
  AMP PEAK  5(1Q22) WILD-TYPE     55     73     77
D5V12, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        89                          55
  CLUS_2                        42                          73
  CLUS_3                        62                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(1Q44) MUTATED       10     11      4      2
  AMP PEAK  6(1Q44) WILD-TYPE      4      6      8      8
D6V1, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        10                           4
  CLUS_2                        11                           6
  CLUS_3                         4                           8
  CLUS_4                         2                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(1Q44) MUTATED        9      5      5      5      3
  AMP PEAK  6(1Q44) WILD-TYPE      5      4      2      2     13
D6V2, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         5                           4
  CLUS_3                         5                           2
  CLUS_4                         5                           2
  CLUS_5                         3                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(1Q44) MUTATED       83     92     10      9     24
  AMP PEAK  6(1Q44) WILD-TYPE     86    213      9      0     13
D6V3, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        83                          86
  CLUS_2                        92                         213
  CLUS_3                        10                           9
  CLUS_4                         9                           0
  CLUS_5                        24                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       74     26     61
  AMP PEAK  6(1Q44) WILD-TYPE     91     63    110
D6V4, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        74                          91
  CLUS_2                        26                          63
  CLUS_3                        61                         110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(1Q44) MUTATED       14     14     17      7     18      9
  AMP PEAK  6(1Q44) WILD-TYPE     27     23     22      5     23     15
D6V5, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        14                          27
  CLUS_2                        14                          23
  CLUS_3                        17                          22
  CLUS_4                         7                           5
  CLUS_5                        18                          23
  CLUS_6                         9                          15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(1Q44) MUTATED       20     32     21      6
  AMP PEAK  6(1Q44) WILD-TYPE     47     35     22     11
D6V6, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        20                          47
  CLUS_2                        32                          35
  CLUS_3                        21                          22
  CLUS_4                         6                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       99     75     44
  AMP PEAK  6(1Q44) WILD-TYPE    135     78    106
D6V7, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        99                         135
  CLUS_2                        75                          78
  CLUS_3                        44                         106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  6(1Q44) MUTATED       61     29     16     34     37     21     20
  AMP PEAK  6(1Q44) WILD-TYPE     62     24     31     31     71     45     55
D6V8, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        61                          62
  CLUS_2                        29                          24
  CLUS_3                        16                          31
  CLUS_4                        34                          31
  CLUS_5                        37                          71
  CLUS_6                        21                          45
  CLUS_7                        20                          55
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       87     85     44
  AMP PEAK  6(1Q44) WILD-TYPE    136     65    113
D6V9, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        87                         136
  CLUS_2                        85                          65
  CLUS_3                        44                         113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(1Q44) MUTATED       85     30     43     58
  AMP PEAK  6(1Q44) WILD-TYPE    134     28     94     58
D6V10, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        85                         134
  CLUS_2                        30                          28
  CLUS_3                        43                          94
  CLUS_4                        58                          58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       70     37     49
  AMP PEAK  6(1Q44) WILD-TYPE    102     59     81
D6V11, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        70                         102
  CLUS_2                        37                          59
  CLUS_3                        49                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       67     38     51
  AMP PEAK  6(1Q44) WILD-TYPE     77     77     88
D6V12, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        67                          77
  CLUS_2                        38                          77
  CLUS_3                        51                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2P24.3) MUTATED        1      4      2      1
  AMP PEAK  7(2P24.3) WILD-TYPE     13     13     10      9
D7V1, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                            13
  CLUS_3                           2                            10
  CLUS_4                           1                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(2P24.3) MUTATED        1      4      1      0      2
  AMP PEAK  7(2P24.3) WILD-TYPE     13      5      6      7     14
D7V2, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(2P24.3) MUTATED       79     14     12      4     12
  AMP PEAK  7(2P24.3) WILD-TYPE     90    291      7      5     25
D7V3, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          79                            90
  CLUS_2                          14                           291
  CLUS_3                          12                             7
  CLUS_4                           4                             5
  CLUS_5                          12                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       66     11     19
  AMP PEAK  7(2P24.3) WILD-TYPE     99     78    152
D7V4, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          66                            99
  CLUS_2                          11                            78
  CLUS_3                          19                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(2P24.3) MUTATED        4     11      3      1      6      7
  AMP PEAK  7(2P24.3) WILD-TYPE     37     26     36     11     35     17
D7V5, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                          11                            26
  CLUS_3                           3                            36
  CLUS_4                           1                            11
  CLUS_5                           6                            35
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2P24.3) MUTATED       10     13      4      5
  AMP PEAK  7(2P24.3) WILD-TYPE     57     54     39     12
D7V6, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          10                            57
  CLUS_2                          13                            54
  CLUS_3                           4                            39
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       85     19     17
  AMP PEAK  7(2P24.3) WILD-TYPE    149    134    133
D7V7, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          85                           149
  CLUS_2                          19                           134
  CLUS_3                          17                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(2P24.3) MUTATED       59      7     14      6     19     10
  AMP PEAK  7(2P24.3) WILD-TYPE     64     46     33     59     89     56
                               vv
clus                            CLUS_7
  AMP PEAK  7(2P24.3) MUTATED        6
  AMP PEAK  7(2P24.3) WILD-TYPE     69
D7V8, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          59                            64
  CLUS_2                           7                            46
  CLUS_3                          14                            33
  CLUS_4                           6                            59
  CLUS_5                          19                            89
  CLUS_6                          10                            56
  CLUS_7                           6                            69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       79     21     19
  AMP PEAK  7(2P24.3) WILD-TYPE    144    129    138
D7V9, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          79                           144
  CLUS_2                          21                           129
  CLUS_3                          19                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2P24.3) MUTATED       39      7     18     55
  AMP PEAK  7(2P24.3) WILD-TYPE    180     51    119     61
D7V10, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          39                           180
  CLUS_2                           7                            51
  CLUS_3                          18                           119
  CLUS_4                          55                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       56     20     16
  AMP PEAK  7(2P24.3) WILD-TYPE    116     76    114
D7V11, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          56                           116
  CLUS_2                          20                            76
  CLUS_3                          16                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       46     14     32
  AMP PEAK  7(2P24.3) WILD-TYPE     98    101    107
D7V12, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          46                            98
  CLUS_2                          14                           101
  CLUS_3                          32                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(2Q13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q13) MUTATED        2      6      2      0
  AMP PEAK  8(2Q13) WILD-TYPE     12     11     10     10
D8V1, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         2                          12
  CLUS_2                         6                          11
  CLUS_3                         2                          10
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(2Q13) MUTATED        3      5      1      0      1
  AMP PEAK  8(2Q13) WILD-TYPE     11      4      6      7     15
D8V2, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         3                          11
  CLUS_2                         5                           4
  CLUS_3                         1                           6
  CLUS_4                         0                           7
  CLUS_5                         1                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(2Q13) MUTATED       90      8      9      3      9
  AMP PEAK  8(2Q13) WILD-TYPE     79    297     10      6     28
D8V3, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        90                          79
  CLUS_2                         8                         297
  CLUS_3                         9                          10
  CLUS_4                         3                           6
  CLUS_5                         9                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       72     14     10
  AMP PEAK  8(2Q13) WILD-TYPE     93     75    161
D8V4, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        72                          93
  CLUS_2                        14                          75
  CLUS_3                        10                         161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(2Q13) MUTATED        5     12      1      1      4      7
  AMP PEAK  8(2Q13) WILD-TYPE     36     25     38     11     37     17
D8V5, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         5                          36
  CLUS_2                        12                          25
  CLUS_3                         1                          38
  CLUS_4                         1                          11
  CLUS_5                         4                          37
  CLUS_6                         7                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q13) MUTATED       13      8      3      6
  AMP PEAK  8(2Q13) WILD-TYPE     54     59     40     11
D8V6, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        13                          54
  CLUS_2                         8                          59
  CLUS_3                         3                          40
  CLUS_4                         6                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       98     11      9
  AMP PEAK  8(2Q13) WILD-TYPE    136    142    141
D8V7, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        98                         136
  CLUS_2                        11                         142
  CLUS_3                         9                         141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(2Q13) MUTATED       73      5     13      2     15      6      4
  AMP PEAK  8(2Q13) WILD-TYPE     50     48     34     63     93     60     71
D8V8, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        73                          50
  CLUS_2                         5                          48
  CLUS_3                        13                          34
  CLUS_4                         2                          63
  CLUS_5                        15                          93
  CLUS_6                         6                          60
  CLUS_7                         4                          71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       92     16      9
  AMP PEAK  8(2Q13) WILD-TYPE    131    134    148
D8V9, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        92                         131
  CLUS_2                        16                         134
  CLUS_3                         9                         148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q13) MUTATED       37      5     10     65
  AMP PEAK  8(2Q13) WILD-TYPE    182     53    127     51
D8V10, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        37                         182
  CLUS_2                         5                          53
  CLUS_3                        10                         127
  CLUS_4                        65                          51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       61     22     11
  AMP PEAK  8(2Q13) WILD-TYPE    111     74    119
D8V11, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        61                         111
  CLUS_2                        22                          74
  CLUS_3                        11                         119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       51      8     35
  AMP PEAK  8(2Q13) WILD-TYPE     93    107    104
D8V12, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        51                          93
  CLUS_2                         8                         107
  CLUS_3                        35                         104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P25.1) MUTATED        1      5      2      0
  AMP PEAK  9(3P25.1) WILD-TYPE     13     12     10     10
D9V1, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           2                            10
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(3P25.1) MUTATED        3      3      2      0      0
  AMP PEAK  9(3P25.1) WILD-TYPE     11      6      5      7     16
D9V2, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           3                             6
  CLUS_3                           2                             5
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(3P25.1) MUTATED       62      4      1      3     12
  AMP PEAK  9(3P25.1) WILD-TYPE    107    301     18      6     25
D9V3, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          62                           107
  CLUS_2                           4                           301
  CLUS_3                           1                            18
  CLUS_4                           3                             6
  CLUS_5                          12                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       44     14     10
  AMP PEAK  9(3P25.1) WILD-TYPE    121     75    161
D9V4, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          44                           121
  CLUS_2                          14                            75
  CLUS_3                          10                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(3P25.1) MUTATED        6      7      3      1      0      1
  AMP PEAK  9(3P25.1) WILD-TYPE     35     30     36     11     41     23
D9V5, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           7                            30
  CLUS_3                           3                            36
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           1                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P25.1) MUTATED        9      7      2      0
  AMP PEAK  9(3P25.1) WILD-TYPE     58     60     41     17
D9V6, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           7                            60
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       66      4     12
  AMP PEAK  9(3P25.1) WILD-TYPE    168    149    138
D9V7, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          66                           168
  CLUS_2                           4                           149
  CLUS_3                          12                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(3P25.1) MUTATED       41      0     13      4     15      5
  AMP PEAK  9(3P25.1) WILD-TYPE     82     53     34     61     93     61
                               vv
clus                            CLUS_7
  AMP PEAK  9(3P25.1) MUTATED        4
  AMP PEAK  9(3P25.1) WILD-TYPE     71
D9V8, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          41                            82
  CLUS_2                           0                            53
  CLUS_3                          13                            34
  CLUS_4                           4                            61
  CLUS_5                          15                            93
  CLUS_6                           5                            61
  CLUS_7                           4                            71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       58     11     11
  AMP PEAK  9(3P25.1) WILD-TYPE    165    139    146
D9V9, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          58                           165
  CLUS_2                          11                           139
  CLUS_3                          11                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P25.1) MUTATED       24      0     13     43
  AMP PEAK  9(3P25.1) WILD-TYPE    195     58    124     73
D9V10, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          24                           195
  CLUS_2                           0                            58
  CLUS_3                          13                           124
  CLUS_4                          43                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       40     18      7
  AMP PEAK  9(3P25.1) WILD-TYPE    132     78    123
D9V11, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          40                           132
  CLUS_2                          18                            78
  CLUS_3                           7                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       35      9     21
  AMP PEAK  9(3P25.1) WILD-TYPE    109    106    118
D9V12, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          35                           109
  CLUS_2                           9                           106
  CLUS_3                          21                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(3P14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED        0      2      1      0
  AMP PEAK 10(3P14.1) WILD-TYPE     14     15     11     10
D10V1, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           2                            15
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(3P14.1) MUTATED        1      1      1      0      0
  AMP PEAK 10(3P14.1) WILD-TYPE     13      8      6      7     16
D10V2, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           1                             8
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(3P14.1) MUTATED       46      3      1      3     12
  AMP PEAK 10(3P14.1) WILD-TYPE    123    302     18      6     25
D10V3, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          46                           123
  CLUS_2                           3                           302
  CLUS_3                           1                            18
  CLUS_4                           3                             6
  CLUS_5                          12                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       35     10     11
  AMP PEAK 10(3P14.1) WILD-TYPE    130     79    160
D10V4, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          35                           130
  CLUS_2                          10                            79
  CLUS_3                          11                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(3P14.1) MUTATED        4      6      2      1      0      0
  AMP PEAK 10(3P14.1) WILD-TYPE     37     31     37     11     41     24
D10V5, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           6                            31
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           0                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED        6      5      2      0
  AMP PEAK 10(3P14.1) WILD-TYPE     61     62     41     17
D10V6, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           6                            61
  CLUS_2                           5                            62
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       49      4     12
  AMP PEAK 10(3P14.1) WILD-TYPE    185    149    138
D10V7, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          49                           185
  CLUS_2                           4                           149
  CLUS_3                          12                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(3P14.1) MUTATED       29      0      9      4     14      4
  AMP PEAK 10(3P14.1) WILD-TYPE     94     53     38     61     94     62
                               vv
clus                            CLUS_7
  AMP PEAK 10(3P14.1) MUTATED        5
  AMP PEAK 10(3P14.1) WILD-TYPE     70
D10V8, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          29                            94
  CLUS_2                           0                            53
  CLUS_3                           9                            38
  CLUS_4                           4                            61
  CLUS_5                          14                            94
  CLUS_6                           4                            62
  CLUS_7                           5                            70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       44     10     10
  AMP PEAK 10(3P14.1) WILD-TYPE    179    140    147
D10V9, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          44                           179
  CLUS_2                          10                           140
  CLUS_3                          10                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED       20      0     13     31
  AMP PEAK 10(3P14.1) WILD-TYPE    199     58    124     85
D10V10, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          20                           199
  CLUS_2                           0                            58
  CLUS_3                          13                           124
  CLUS_4                          31                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       28     17      7
  AMP PEAK 10(3P14.1) WILD-TYPE    144     79    123
D10V11, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          28                           144
  CLUS_2                          17                            79
  CLUS_3                           7                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       24     10     18
  AMP PEAK 10(3P14.1) WILD-TYPE    120    105    121
D10V12, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          24                           120
  CLUS_2                          10                           105
  CLUS_3                          18                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED        1     11      1      0
  AMP PEAK 11(3Q26.2) WILD-TYPE     13      6     11     10
D11V1, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                          11                             6
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(3Q26.2) MUTATED        4      8      1      0      0
  AMP PEAK 11(3Q26.2) WILD-TYPE     10      1      6      7     16
D11V2, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           8                             1
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(3Q26.2) MUTATED      141     11      3      5     15
  AMP PEAK 11(3Q26.2) WILD-TYPE     28    294     16      4     22
D11V3, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         141                            28
  CLUS_2                          11                           294
  CLUS_3                           3                            16
  CLUS_4                           5                             4
  CLUS_5                          15                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED      102     25     23
  AMP PEAK 11(3Q26.2) WILD-TYPE     63     64    148
D11V4, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         102                            63
  CLUS_2                          25                            64
  CLUS_3                          23                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(3Q26.2) MUTATED       11     15      4      1      1      6
  AMP PEAK 11(3Q26.2) WILD-TYPE     30     22     35     11     40     18
D11V5, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          11                            30
  CLUS_2                          15                            22
  CLUS_3                           4                            35
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED       21     10      3      4
  AMP PEAK 11(3Q26.2) WILD-TYPE     46     57     40     13
D11V6, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          21                            46
  CLUS_2                          10                            57
  CLUS_3                           3                            40
  CLUS_4                           4                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED      143      7     24
  AMP PEAK 11(3Q26.2) WILD-TYPE     91    146    126
D11V7, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         143                            91
  CLUS_2                           7                           146
  CLUS_3                          24                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(3Q26.2) MUTATED       95      0     26      5     26     14
  AMP PEAK 11(3Q26.2) WILD-TYPE     28     53     21     60     82     52
                               vv
clus                            CLUS_7
  AMP PEAK 11(3Q26.2) MUTATED        8
  AMP PEAK 11(3Q26.2) WILD-TYPE     67
D11V8, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          95                            28
  CLUS_2                           0                            53
  CLUS_3                          26                            21
  CLUS_4                           5                            60
  CLUS_5                          26                            82
  CLUS_6                          14                            52
  CLUS_7                           8                            67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED      131     19     21
  AMP PEAK 11(3Q26.2) WILD-TYPE     92    131    136
D11V9, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         131                            92
  CLUS_2                          19                           131
  CLUS_3                          21                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED       61      0     24     86
  AMP PEAK 11(3Q26.2) WILD-TYPE    158     58    113     30
D11V10, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          61                           158
  CLUS_2                           0                            58
  CLUS_3                          24                           113
  CLUS_4                          86                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       85     33     25
  AMP PEAK 11(3Q26.2) WILD-TYPE     87     63    105
D11V11, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          85                            87
  CLUS_2                          33                            63
  CLUS_3                          25                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       78     20     45
  AMP PEAK 11(3Q26.2) WILD-TYPE     66     95     94
D11V12, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          78                            66
  CLUS_2                          20                            95
  CLUS_3                          45                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(3Q26.2) MUTATED        1     10      1      0
  AMP PEAK 12(3Q26.2) WILD-TYPE     13      7     11     10
D12V1, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                          10                             7
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(3Q26.2) MUTATED        3      8      1      0      0
  AMP PEAK 12(3Q26.2) WILD-TYPE     11      1      6      7     16
D12V2, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           8                             1
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(3Q26.2) MUTATED      135      7      3      5     14
  AMP PEAK 12(3Q26.2) WILD-TYPE     34    298     16      4     23
D12V3, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         135                            34
  CLUS_2                           7                           298
  CLUS_3                           3                            16
  CLUS_4                           5                             4
  CLUS_5                          14                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED      101     20     20
  AMP PEAK 12(3Q26.2) WILD-TYPE     64     69    151
D12V4, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         101                            64
  CLUS_2                          20                            69
  CLUS_3                          20                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(3Q26.2) MUTATED       11     13      4      1      1      7
  AMP PEAK 12(3Q26.2) WILD-TYPE     30     24     35     11     40     17
D12V5, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          11                            30
  CLUS_2                          13                            24
  CLUS_3                           4                            35
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(3Q26.2) MUTATED       19     10      3      5
  AMP PEAK 12(3Q26.2) WILD-TYPE     48     57     40     12
D12V6, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          19                            48
  CLUS_2                          10                            57
  CLUS_3                           3                            40
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED      136      7     20
  AMP PEAK 12(3Q26.2) WILD-TYPE     98    146    130
D12V7, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         136                            98
  CLUS_2                           7                           146
  CLUS_3                          20                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(3Q26.2) MUTATED       92      0     24      5     24     11
  AMP PEAK 12(3Q26.2) WILD-TYPE     31     53     23     60     84     55
                               vv
clus                            CLUS_7
  AMP PEAK 12(3Q26.2) MUTATED        7
  AMP PEAK 12(3Q26.2) WILD-TYPE     68
D12V8, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          92                            31
  CLUS_2                           0                            53
  CLUS_3                          24                            23
  CLUS_4                           5                            60
  CLUS_5                          24                            84
  CLUS_6                          11                            55
  CLUS_7                           7                            68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED      123     19     18
  AMP PEAK 12(3Q26.2) WILD-TYPE    100    131    139
D12V9, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         123                           100
  CLUS_2                          19                           131
  CLUS_3                          18                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(3Q26.2) MUTATED       57      0     20     83
  AMP PEAK 12(3Q26.2) WILD-TYPE    162     58    117     33
D12V10, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          57                           162
  CLUS_2                           0                            58
  CLUS_3                          20                           117
  CLUS_4                          83                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       84     28     22
  AMP PEAK 12(3Q26.2) WILD-TYPE     88     68    108
D12V11, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          84                            88
  CLUS_2                          28                            68
  CLUS_3                          22                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       77     16     41
  AMP PEAK 12(3Q26.2) WILD-TYPE     67     99     98
D12V12, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          77                            67
  CLUS_2                          16                            99
  CLUS_3                          41                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4P16.3) MUTATED        1      5      0      0
  AMP PEAK 13(4P16.3) WILD-TYPE     13     12     12     10
D13V1, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(4P16.3) MUTATED        2      4      0      0      0
  AMP PEAK 13(4P16.3) WILD-TYPE     12      5      7      7     16
D13V2, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(4P16.3) MUTATED       50      2      0      0      1
  AMP PEAK 13(4P16.3) WILD-TYPE    119    303     19      9     36
D13V3, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          50                           119
  CLUS_2                           2                           303
  CLUS_3                           0                            19
  CLUS_4                           0                             9
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       30      8      6
  AMP PEAK 13(4P16.3) WILD-TYPE    135     81    165
D13V4, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          30                           135
  CLUS_2                           8                            81
  CLUS_3                           6                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(4P16.3) MUTATED        4      5      1      0      0      2
  AMP PEAK 13(4P16.3) WILD-TYPE     37     32     38     12     41     22
D13V5, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           5                            32
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4P16.3) MUTATED       10      0      1      1
  AMP PEAK 13(4P16.3) WILD-TYPE     57     67     42     16
D13V6, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          10                            57
  CLUS_2                           0                            67
  CLUS_3                           1                            42
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       49      1      2
  AMP PEAK 13(4P16.3) WILD-TYPE    185    152    148
D13V7, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          49                           185
  CLUS_2                           1                           152
  CLUS_3                           2                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(4P16.3) MUTATED       39      0      3      0      8      1
  AMP PEAK 13(4P16.3) WILD-TYPE     84     53     44     65    100     65
                               vv
clus                            CLUS_7
  AMP PEAK 13(4P16.3) MUTATED        1
  AMP PEAK 13(4P16.3) WILD-TYPE     74
D13V8, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          39                            84
  CLUS_2                           0                            53
  CLUS_3                           3                            44
  CLUS_4                           0                            65
  CLUS_5                           8                           100
  CLUS_6                           1                            65
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       44      3      4
  AMP PEAK 13(4P16.3) WILD-TYPE    179    147    153
D13V9, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          44                           179
  CLUS_2                           3                           147
  CLUS_3                           4                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4P16.3) MUTATED       13      0      4     34
  AMP PEAK 13(4P16.3) WILD-TYPE    206     58    133     82
D13V10, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          13                           206
  CLUS_2                           0                            58
  CLUS_3                           4                           133
  CLUS_4                          34                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       29      7      6
  AMP PEAK 13(4P16.3) WILD-TYPE    143     89    124
D13V11, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          29                           143
  CLUS_2                           7                            89
  CLUS_3                           6                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       26      4     12
  AMP PEAK 13(4P16.3) WILD-TYPE    118    111    127
D13V12, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          26                           118
  CLUS_2                           4                           111
  CLUS_3                          12                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5P15.33) MUTATED        2      5      1      0
  AMP PEAK 14(5P15.33) WILD-TYPE     12     12     11     10
D14V1, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            5                             12
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(5P15.33) MUTATED        2      4      1      1      0
  AMP PEAK 14(5P15.33) WILD-TYPE     12      5      6      6     16
D14V2, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            1                              6
  CLUS_4                            1                              6
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(5P15.33) MUTATED       80      4      4      1      0
  AMP PEAK 14(5P15.33) WILD-TYPE     89    301     15      8     37
D14V3, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           80                             89
  CLUS_2                            4                            301
  CLUS_3                            4                             15
  CLUS_4                            1                              8
  CLUS_5                            0                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       58     11      7
  AMP PEAK 14(5P15.33) WILD-TYPE    107     78    164
D14V4, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           58                            107
  CLUS_2                           11                             78
  CLUS_3                            7                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(5P15.33) MUTATED        3      5      2      0      3      5
  AMP PEAK 14(5P15.33) WILD-TYPE     38     32     37     12     38     19
D14V5, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            5                             32
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            3                             38
  CLUS_6                            5                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5P15.33) MUTATED        7      4      4      3
  AMP PEAK 14(5P15.33) WILD-TYPE     60     63     39     14
D14V6, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            4                             63
  CLUS_3                            4                             39
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       79      5      4
  AMP PEAK 14(5P15.33) WILD-TYPE    155    148    146
D14V7, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           79                            155
  CLUS_2                            5                            148
  CLUS_3                            4                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(5P15.33) MUTATED       54      3     13      2     11      5
  AMP PEAK 14(5P15.33) WILD-TYPE     69     50     34     63     97     61
                                vv
clus                             CLUS_7
  AMP PEAK 14(5P15.33) MUTATED        0
  AMP PEAK 14(5P15.33) WILD-TYPE     75
D14V8, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           54                             69
  CLUS_2                            3                             50
  CLUS_3                           13                             34
  CLUS_4                            2                             63
  CLUS_5                           11                             97
  CLUS_6                            5                             61
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       71     12      5
  AMP PEAK 14(5P15.33) WILD-TYPE    152    138    152
D14V9, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           71                            152
  CLUS_2                           12                            138
  CLUS_3                            5                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5P15.33) MUTATED       28      3      5     52
  AMP PEAK 14(5P15.33) WILD-TYPE    191     55    132     64
D14V10, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           28                            191
  CLUS_2                            3                             55
  CLUS_3                            5                            132
  CLUS_4                           52                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       54     15      6
  AMP PEAK 14(5P15.33) WILD-TYPE    118     81    124
D14V11, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           54                            118
  CLUS_2                           15                             81
  CLUS_3                            6                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       47      4     24
  AMP PEAK 14(5P15.33) WILD-TYPE     97    111    115
D14V12, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           47                             97
  CLUS_2                            4                            111
  CLUS_3                           24                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5Q35.3) MUTATED        0      3      0      0
  AMP PEAK 15(5Q35.3) WILD-TYPE     14     14     12     10
D15V1, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           3                            14
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(5Q35.3) MUTATED        1      2      0      0      0
  AMP PEAK 15(5Q35.3) WILD-TYPE     13      7      7      7     16
D15V2, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           2                             7
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(5Q35.3) MUTATED       51      1      4      1      0
  AMP PEAK 15(5Q35.3) WILD-TYPE    118    304     15      8     37
D15V3, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          51                           118
  CLUS_2                           1                           304
  CLUS_3                           4                            15
  CLUS_4                           1                             8
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       35      9      6
  AMP PEAK 15(5Q35.3) WILD-TYPE    130     80    165
D15V4, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          35                           130
  CLUS_2                           9                            80
  CLUS_3                           6                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(5Q35.3) MUTATED        1      5      0      0      3      1
  AMP PEAK 15(5Q35.3) WILD-TYPE     40     32     39     12     38     23
D15V5, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           1                            40
  CLUS_2                           5                            32
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           3                            38
  CLUS_6                           1                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5Q35.3) MUTATED        4      4      2      0
  AMP PEAK 15(5Q35.3) WILD-TYPE     63     63     41     17
D15V6, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           4                            63
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       50      4      3
  AMP PEAK 15(5Q35.3) WILD-TYPE    184    149    147
D15V7, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          50                           184
  CLUS_2                           4                           149
  CLUS_3                           3                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(5Q35.3) MUTATED       35      2      9      1      7      2
  AMP PEAK 15(5Q35.3) WILD-TYPE     88     51     38     64    101     64
                               vv
clus                            CLUS_7
  AMP PEAK 15(5Q35.3) MUTATED        1
  AMP PEAK 15(5Q35.3) WILD-TYPE     74
D15V8, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          35                            88
  CLUS_2                           2                            51
  CLUS_3                           9                            38
  CLUS_4                           1                            64
  CLUS_5                           7                           101
  CLUS_6                           2                            64
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       44      8      4
  AMP PEAK 15(5Q35.3) WILD-TYPE    179    142    153
D15V9, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          44                           179
  CLUS_2                           8                           142
  CLUS_3                           4                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5Q35.3) MUTATED       18      3      4     31
  AMP PEAK 15(5Q35.3) WILD-TYPE    201     55    133     85
D15V10, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          18                           201
  CLUS_2                           3                            55
  CLUS_3                           4                           133
  CLUS_4                          31                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       30     13      5
  AMP PEAK 15(5Q35.3) WILD-TYPE    142     83    125
D15V11, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          30                           142
  CLUS_2                          13                            83
  CLUS_3                           5                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       27      5     16
  AMP PEAK 15(5Q35.3) WILD-TYPE    117    110    123
D15V12, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          27                           117
  CLUS_2                           5                           110
  CLUS_3                          16                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(6P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6P24.2) MUTATED        1      9      2      0
  AMP PEAK 16(6P24.2) WILD-TYPE     13      8     10     10
D16V1, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           9                             8
  CLUS_3                           2                            10
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(6P24.2) MUTATED        3      7      0      0      2
  AMP PEAK 16(6P24.2) WILD-TYPE     11      2      7      7     14
D16V2, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(6P24.2) MUTATED       95      8      1      1     12
  AMP PEAK 16(6P24.2) WILD-TYPE     74    297     18      8     25
D16V3, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          95                            74
  CLUS_2                           8                           297
  CLUS_3                           1                            18
  CLUS_4                           1                             8
  CLUS_5                          12                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       73     15     12
  AMP PEAK 16(6P24.2) WILD-TYPE     92     74    159
D16V4, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          73                            92
  CLUS_2                          15                            74
  CLUS_3                          12                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(6P24.2) MUTATED        5     13      2      1      0      3
  AMP PEAK 16(6P24.2) WILD-TYPE     36     24     37     11     41     21
D16V5, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                          13                            24
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6P24.2) MUTATED       12      8      2      2
  AMP PEAK 16(6P24.2) WILD-TYPE     55     59     41     15
D16V6, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           8                            59
  CLUS_3                           2                            41
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       97      5     15
  AMP PEAK 16(6P24.2) WILD-TYPE    137    148    135
D16V7, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          97                           137
  CLUS_2                           5                           148
  CLUS_3                          15                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(6P24.2) MUTATED       68      0     11      5     19      8
  AMP PEAK 16(6P24.2) WILD-TYPE     55     53     36     60     89     58
                               vv
clus                            CLUS_7
  AMP PEAK 16(6P24.2) MUTATED        6
  AMP PEAK 16(6P24.2) WILD-TYPE     69
D16V8, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          68                            55
  CLUS_2                           0                            53
  CLUS_3                          11                            36
  CLUS_4                           5                            60
  CLUS_5                          19                            89
  CLUS_6                           8                            58
  CLUS_7                           6                            69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       84     18     12
  AMP PEAK 16(6P24.2) WILD-TYPE    139    132    145
D16V9, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          84                           139
  CLUS_2                          18                           132
  CLUS_3                          12                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6P24.2) MUTATED       42      0     12     60
  AMP PEAK 16(6P24.2) WILD-TYPE    177     58    125     56
D16V10, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          42                           177
  CLUS_2                           0                            58
  CLUS_3                          12                           125
  CLUS_4                          60                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       58     24     14
  AMP PEAK 16(6P24.2) WILD-TYPE    114     72    116
D16V11, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          58                           114
  CLUS_2                          24                            72
  CLUS_3                          14                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       51     13     32
  AMP PEAK 16(6P24.2) WILD-TYPE     93    102    107
D16V12, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          51                            93
  CLUS_2                          13                           102
  CLUS_3                          32                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(6P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(6P22.3) MUTATED        1      5      2      0
  AMP PEAK 17(6P22.3) WILD-TYPE     13     12     10     10
D17V1, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           2                            10
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(6P22.3) MUTATED        2      4      0      0      2
  AMP PEAK 17(6P22.3) WILD-TYPE     12      5      7      7     14
D17V2, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(6P22.3) MUTATED       86      7      1      1     12
  AMP PEAK 17(6P22.3) WILD-TYPE     83    298     18      8     25
D17V3, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          86                            83
  CLUS_2                           7                           298
  CLUS_3                           1                            18
  CLUS_4                           1                             8
  CLUS_5                          12                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6P22.3) MUTATED       70     15     10
  AMP PEAK 17(6P22.3) WILD-TYPE     95     74    161
D17V4, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          70                            95
  CLUS_2                          15                            74
  CLUS_3                          10                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(6P22.3) MUTATED        4      8      2      1      0      2
  AMP PEAK 17(6P22.3) WILD-TYPE     37     29     37     11     41     22
D17V5, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           8                            29
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(6P22.3) MUTATED        8      6      2      1
  AMP PEAK 17(6P22.3) WILD-TYPE     59     61     41     16
D17V6, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                           6                            61
  CLUS_3                           2                            41
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6P22.3) MUTATED       88      5     14
  AMP PEAK 17(6P22.3) WILD-TYPE    146    148    136
D17V7, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          88                           146
  CLUS_2                           5                           148
  CLUS_3                          14                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(6P22.3) MUTATED       61      0     12      5     16      7
  AMP PEAK 17(6P22.3) WILD-TYPE     62     53     35     60     92     59
                               vv
clus                            CLUS_7
  AMP PEAK 17(6P22.3) MUTATED        6
  AMP PEAK 17(6P22.3) WILD-TYPE     69
D17V8, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          61                            62
  CLUS_2                           0                            53
  CLUS_3                          12                            35
  CLUS_4                           5                            60
  CLUS_5                          16                            92
  CLUS_6                           7                            59
  CLUS_7                           6                            69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6P22.3) MUTATED       80     15     11
  AMP PEAK 17(6P22.3) WILD-TYPE    143    135    146
D17V9, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          80                           143
  CLUS_2                          15                           135
  CLUS_3                          11                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(6P22.3) MUTATED       39      0     11     56
  AMP PEAK 17(6P22.3) WILD-TYPE    180     58    126     60
D17V10, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          39                           180
  CLUS_2                           0                            58
  CLUS_3                          11                           126
  CLUS_4                          56                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6P22.3) MUTATED       58     21     12
  AMP PEAK 17(6P22.3) WILD-TYPE    114     75    118
D17V11, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          58                           114
  CLUS_2                          21                            75
  CLUS_3                          12                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6P22.3) MUTATED       50     11     30
  AMP PEAK 17(6P22.3) WILD-TYPE     94    104    109
D17V12, multiclass
        clus
vv       AMP PEAK 17(6P22.3) MUTATED AMP PEAK 17(6P22.3) WILD-TYPE
  CLUS_1                          50                            94
  CLUS_2                          11                           104
  CLUS_3                          30                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(6Q25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(6Q25.1) MUTATED        0      2      2      0
  AMP PEAK 18(6Q25.1) WILD-TYPE     14     15     10     10
D18V1, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           2                            15
  CLUS_3                           2                            10
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(6Q25.1) MUTATED        1      1      0      0      2
  AMP PEAK 18(6Q25.1) WILD-TYPE     13      8      7      7     14
D18V2, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           1                             8
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(6Q25.1) MUTATED       65      7      3      2     11
  AMP PEAK 18(6Q25.1) WILD-TYPE    104    298     16      7     26
D18V3, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          65                           104
  CLUS_2                           7                           298
  CLUS_3                           3                            16
  CLUS_4                           2                             7
  CLUS_5                          11                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(6Q25.1) MUTATED       55     10     14
  AMP PEAK 18(6Q25.1) WILD-TYPE    110     79    157
D18V4, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          55                           110
  CLUS_2                          10                            79
  CLUS_3                          14                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(6Q25.1) MUTATED        5      7      1      1      1      2
  AMP PEAK 18(6Q25.1) WILD-TYPE     36     30     38     11     40     22
D18V5, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           7                            30
  CLUS_3                           1                            38
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(6Q25.1) MUTATED        9      5      2      1
  AMP PEAK 18(6Q25.1) WILD-TYPE     58     62     41     16
D18V6, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           5                            62
  CLUS_3                           2                            41
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(6Q25.1) MUTATED       63      7     17
  AMP PEAK 18(6Q25.1) WILD-TYPE    171    146    133
D18V7, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          63                           171
  CLUS_2                           7                           146
  CLUS_3                          17                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(6Q25.1) MUTATED       40      0      9      6     15     11
  AMP PEAK 18(6Q25.1) WILD-TYPE     83     53     38     59     93     55
                               vv
clus                            CLUS_7
  AMP PEAK 18(6Q25.1) MUTATED        6
  AMP PEAK 18(6Q25.1) WILD-TYPE     69
D18V8, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          40                            83
  CLUS_2                           0                            53
  CLUS_3                           9                            38
  CLUS_4                           6                            59
  CLUS_5                          15                            93
  CLUS_6                          11                            55
  CLUS_7                           6                            69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(6Q25.1) MUTATED       57     19     12
  AMP PEAK 18(6Q25.1) WILD-TYPE    166    131    145
D18V9, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          57                           166
  CLUS_2                          19                           131
  CLUS_3                          12                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(6Q25.1) MUTATED       39      1     12     36
  AMP PEAK 18(6Q25.1) WILD-TYPE    180     57    125     80
D18V10, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          39                           180
  CLUS_2                           1                            57
  CLUS_3                          12                           125
  CLUS_4                          36                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(6Q25.1) MUTATED       48     17     11
  AMP PEAK 18(6Q25.1) WILD-TYPE    124     79    119
D18V11, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          48                           124
  CLUS_2                          17                            79
  CLUS_3                          11                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(6Q25.1) MUTATED       37     15     24
  AMP PEAK 18(6Q25.1) WILD-TYPE    107    100    115
D18V12, multiclass
        clus
vv       AMP PEAK 18(6Q25.1) MUTATED AMP PEAK 18(6Q25.1) WILD-TYPE
  CLUS_1                          37                           107
  CLUS_2                          15                           100
  CLUS_3                          24                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(7Q31.2) MUTATED        1      4      3      1
  AMP PEAK 19(7Q31.2) WILD-TYPE     13     13      9      9
D19V1, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                            13
  CLUS_3                           3                             9
  CLUS_4                           1                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(7Q31.2) MUTATED        1      3      2      1      2
  AMP PEAK 19(7Q31.2) WILD-TYPE     13      6      5      6     14
D19V2, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           3                             6
  CLUS_3                           2                             5
  CLUS_4                           1                             6
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(7Q31.2) MUTATED       53     15     13      2     10
  AMP PEAK 19(7Q31.2) WILD-TYPE    116    290      6      7     27
D19V3, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          53                           116
  CLUS_2                          15                           290
  CLUS_3                          13                             6
  CLUS_4                           2                             7
  CLUS_5                          10                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(7Q31.2) MUTATED       45      8     21
  AMP PEAK 19(7Q31.2) WILD-TYPE    120     81    150
D19V4, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          45                           120
  CLUS_2                           8                            81
  CLUS_3                          21                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(7Q31.2) MUTATED        3      5      2      1      5      4
  AMP PEAK 19(7Q31.2) WILD-TYPE     38     32     37     11     36     20
D19V5, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                           5                            32
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           5                            36
  CLUS_6                           4                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(7Q31.2) MUTATED        4      9      5      2
  AMP PEAK 19(7Q31.2) WILD-TYPE     63     58     38     15
D19V6, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           9                            58
  CLUS_3                           5                            38
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(7Q31.2) MUTATED       58     17     18
  AMP PEAK 19(7Q31.2) WILD-TYPE    176    136    132
D19V7, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          58                           176
  CLUS_2                          17                           136
  CLUS_3                          18                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(7Q31.2) MUTATED       34      8     13      2     19     10
  AMP PEAK 19(7Q31.2) WILD-TYPE     89     45     34     63     89     56
                               vv
clus                            CLUS_7
  AMP PEAK 19(7Q31.2) MUTATED        7
  AMP PEAK 19(7Q31.2) WILD-TYPE     68
D19V8, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          34                            89
  CLUS_2                           8                            45
  CLUS_3                          13                            34
  CLUS_4                           2                            63
  CLUS_5                          19                            89
  CLUS_6                          10                            56
  CLUS_7                           7                            68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(7Q31.2) MUTATED       54     23     16
  AMP PEAK 19(7Q31.2) WILD-TYPE    169    127    141
D19V9, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          54                           169
  CLUS_2                          23                           127
  CLUS_3                          16                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(7Q31.2) MUTATED       35     10     16     32
  AMP PEAK 19(7Q31.2) WILD-TYPE    184     48    121     84
D19V10, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          35                           184
  CLUS_2                          10                            48
  CLUS_3                          16                           121
  CLUS_4                          32                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(7Q31.2) MUTATED       39     19     14
  AMP PEAK 19(7Q31.2) WILD-TYPE    133     77    116
D19V11, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          39                           133
  CLUS_2                          19                            77
  CLUS_3                          14                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(7Q31.2) MUTATED       35     12     25
  AMP PEAK 19(7Q31.2) WILD-TYPE    109    103    114
D19V12, multiclass
        clus
vv       AMP PEAK 19(7Q31.2) MUTATED AMP PEAK 19(7Q31.2) WILD-TYPE
  CLUS_1                          35                           109
  CLUS_2                          12                           103
  CLUS_3                          25                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(8P11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8P11.22) MUTATED        1      6      2      0
  AMP PEAK 20(8P11.22) WILD-TYPE     13     11     10     10
D20V1, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(8P11.22) MUTATED        4      3      0      0      2
  AMP PEAK 20(8P11.22) WILD-TYPE     10      6      7      7     14
D20V2, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(8P11.22) MUTATED       50     29      8      2     37
  AMP PEAK 20(8P11.22) WILD-TYPE    119    276     11      7      0
D20V3, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           50                            119
  CLUS_2                           29                            276
  CLUS_3                            8                             11
  CLUS_4                            2                              7
  CLUS_5                           37                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8P11.22) MUTATED       41     22     43
  AMP PEAK 20(8P11.22) WILD-TYPE    124     67    128
D20V4, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           41                            124
  CLUS_2                           22                             67
  CLUS_3                           43                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(8P11.22) MUTATED        8     11      5      2      2      7
  AMP PEAK 20(8P11.22) WILD-TYPE     33     26     34     10     39     17
D20V5, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           11                             26
  CLUS_3                            5                             34
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                            7                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8P11.22) MUTATED       10     14      6      5
  AMP PEAK 20(8P11.22) WILD-TYPE     57     53     37     12
D20V6, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                           14                             53
  CLUS_3                            6                             37
  CLUS_4                            5                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8P11.22) MUTATED       64     28     34
  AMP PEAK 20(8P11.22) WILD-TYPE    170    125    116
D20V7, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           64                            170
  CLUS_2                           28                            125
  CLUS_3                           34                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(8P11.22) MUTATED       30      9      9      9     36     22
  AMP PEAK 20(8P11.22) WILD-TYPE     93     44     38     56     72     44
                                vv
clus                             CLUS_7
  AMP PEAK 20(8P11.22) MUTATED       11
  AMP PEAK 20(8P11.22) WILD-TYPE     64
D20V8, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           30                             93
  CLUS_2                            9                             44
  CLUS_3                            9                             38
  CLUS_4                            9                             56
  CLUS_5                           36                             72
  CLUS_6                           22                             44
  CLUS_7                           11                             64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8P11.22) MUTATED       55     36     33
  AMP PEAK 20(8P11.22) WILD-TYPE    168    114    124
D20V9, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           55                            168
  CLUS_2                           36                            114
  CLUS_3                           33                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8P11.22) MUTATED       61      6     32     25
  AMP PEAK 20(8P11.22) WILD-TYPE    158     52    105     91
D20V10, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           61                            158
  CLUS_2                            6                             52
  CLUS_3                           32                            105
  CLUS_4                           25                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8P11.22) MUTATED       45     25     29
  AMP PEAK 20(8P11.22) WILD-TYPE    127     71    101
D20V11, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           45                            127
  CLUS_2                           25                             71
  CLUS_3                           29                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8P11.22) MUTATED       39     27     33
  AMP PEAK 20(8P11.22) WILD-TYPE    105     88    106
D20V12, multiclass
        clus
vv       AMP PEAK 20(8P11.22) MUTATED AMP PEAK 20(8P11.22) WILD-TYPE
  CLUS_1                           39                            105
  CLUS_2                           27                             88
  CLUS_3                           33                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8P11.21) MUTATED        1      8      2      0
  AMP PEAK 21(8P11.21) WILD-TYPE     13      9     10     10
D21V1, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            8                              9
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(8P11.21) MUTATED        4      5      0      0      2
  AMP PEAK 21(8P11.21) WILD-TYPE     10      4      7      7     14
D21V2, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(8P11.21) MUTATED       87     29      8      2     36
  AMP PEAK 21(8P11.21) WILD-TYPE     82    276     11      7      1
D21V3, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           87                             82
  CLUS_2                           29                            276
  CLUS_3                            8                             11
  CLUS_4                            2                              7
  CLUS_5                           36                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8P11.21) MUTATED       69     27     42
  AMP PEAK 21(8P11.21) WILD-TYPE     96     62    129
D21V4, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           69                             96
  CLUS_2                           27                             62
  CLUS_3                           42                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(8P11.21) MUTATED        8     12      5      2      2     11
  AMP PEAK 21(8P11.21) WILD-TYPE     33     25     34     10     39     13
D21V5, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           12                             25
  CLUS_3                            5                             34
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                           11                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8P11.21) MUTATED       12     14      6      8
  AMP PEAK 21(8P11.21) WILD-TYPE     55     53     37      9
D21V6, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                           14                             53
  CLUS_3                            6                             37
  CLUS_4                            8                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8P11.21) MUTATED      100     29     33
  AMP PEAK 21(8P11.21) WILD-TYPE    134    124    117
D21V7, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                          100                            134
  CLUS_2                           29                            124
  CLUS_3                           33                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(8P11.21) MUTATED       59      9     19     10     34     20
  AMP PEAK 21(8P11.21) WILD-TYPE     64     44     28     55     74     46
                                vv
clus                             CLUS_7
  AMP PEAK 21(8P11.21) MUTATED       11
  AMP PEAK 21(8P11.21) WILD-TYPE     64
D21V8, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           59                             64
  CLUS_2                            9                             44
  CLUS_3                           19                             28
  CLUS_4                           10                             55
  CLUS_5                           34                             74
  CLUS_6                           20                             46
  CLUS_7                           11                             64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8P11.21) MUTATED       91     35     33
  AMP PEAK 21(8P11.21) WILD-TYPE    132    115    124
D21V9, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           91                            132
  CLUS_2                           35                            115
  CLUS_3                           33                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8P11.21) MUTATED       62      6     31     60
  AMP PEAK 21(8P11.21) WILD-TYPE    157     52    106     56
D21V10, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           62                            157
  CLUS_2                            6                             52
  CLUS_3                           31                            106
  CLUS_4                           60                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8P11.21) MUTATED       75     30     26
  AMP PEAK 21(8P11.21) WILD-TYPE     97     66    104
D21V11, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           75                             97
  CLUS_2                           30                             66
  CLUS_3                           26                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8P11.21) MUTATED       62     26     43
  AMP PEAK 21(8P11.21) WILD-TYPE     82     89     96
D21V12, multiclass
        clus
vv       AMP PEAK 21(8P11.21) MUTATED AMP PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           62                             82
  CLUS_2                           26                             89
  CLUS_3                           43                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(8Q24.21) MUTATED        1      8      3      0
  AMP PEAK 22(8Q24.21) WILD-TYPE     13      9      9     10
D22V1, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            8                              9
  CLUS_3                            3                              9
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(8Q24.21) MUTATED        4      5      1      0      2
  AMP PEAK 22(8Q24.21) WILD-TYPE     10      4      6      7     14
D22V2, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(8Q24.21) MUTATED      126     35      8      3     37
  AMP PEAK 22(8Q24.21) WILD-TYPE     43    270     11      6      0
D22V3, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                          126                             43
  CLUS_2                           35                            270
  CLUS_3                            8                             11
  CLUS_4                            3                              6
  CLUS_5                           37                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(8Q24.21) MUTATED      101     32     48
  AMP PEAK 22(8Q24.21) WILD-TYPE     64     57    123
D22V4, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                          101                             64
  CLUS_2                           32                             57
  CLUS_3                           48                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(8Q24.21) MUTATED       12     14      8      2      2     14
  AMP PEAK 22(8Q24.21) WILD-TYPE     29     23     31     10     39     10
D22V5, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                           14                             23
  CLUS_3                            8                             31
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                           14                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(8Q24.21) MUTATED       19     18      6      9
  AMP PEAK 22(8Q24.21) WILD-TYPE     48     49     37      8
D22V6, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           19                             48
  CLUS_2                           18                             49
  CLUS_3                            6                             37
  CLUS_4                            9                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(8Q24.21) MUTATED      140     29     39
  AMP PEAK 22(8Q24.21) WILD-TYPE     94    124    111
D22V7, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                          140                             94
  CLUS_2                           29                            124
  CLUS_3                           39                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(8Q24.21) MUTATED       86     10     27      8     39     26
  AMP PEAK 22(8Q24.21) WILD-TYPE     37     43     20     57     69     40
                                vv
clus                             CLUS_7
  AMP PEAK 22(8Q24.21) MUTATED       12
  AMP PEAK 22(8Q24.21) WILD-TYPE     63
D22V8, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           86                             37
  CLUS_2                           10                             43
  CLUS_3                           27                             20
  CLUS_4                            8                             57
  CLUS_5                           39                             69
  CLUS_6                           26                             40
  CLUS_7                           12                             63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(8Q24.21) MUTATED      130     38     38
  AMP PEAK 22(8Q24.21) WILD-TYPE     93    112    119
D22V9, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                          130                             93
  CLUS_2                           38                            112
  CLUS_3                           38                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(8Q24.21) MUTATED       83      6     35     82
  AMP PEAK 22(8Q24.21) WILD-TYPE    136     52    102     34
D22V10, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           83                            136
  CLUS_2                            6                             52
  CLUS_3                           35                            102
  CLUS_4                           82                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(8Q24.21) MUTATED       95     41     33
  AMP PEAK 22(8Q24.21) WILD-TYPE     77     55     97
D22V11, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           95                             77
  CLUS_2                           41                             55
  CLUS_3                           33                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(8Q24.21) MUTATED       83     30     56
  AMP PEAK 22(8Q24.21) WILD-TYPE     61     85     83
D22V12, multiclass
        clus
vv       AMP PEAK 22(8Q24.21) MUTATED AMP PEAK 22(8Q24.21) WILD-TYPE
  CLUS_1                           83                             61
  CLUS_2                           30                             85
  CLUS_3                           56                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(8Q24.21) MUTATED        1      9      2      0
  AMP PEAK 23(8Q24.21) WILD-TYPE     13      8     10     10
D23V1, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            9                              8
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(8Q24.21) MUTATED        4      6      0      0      2
  AMP PEAK 23(8Q24.21) WILD-TYPE     10      3      7      7     14
D23V2, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            6                              3
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(8Q24.21) MUTATED      127     40      8      3     37
  AMP PEAK 23(8Q24.21) WILD-TYPE     42    265     11      6      0
D23V3, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                          127                             42
  CLUS_2                           40                            265
  CLUS_3                            8                             11
  CLUS_4                            3                              6
  CLUS_5                           37                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(8Q24.21) MUTATED      101     31     53
  AMP PEAK 23(8Q24.21) WILD-TYPE     64     58    118
D23V4, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                          101                             64
  CLUS_2                           31                             58
  CLUS_3                           53                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(8Q24.21) MUTATED       12     17      7      2      2     16
  AMP PEAK 23(8Q24.21) WILD-TYPE     29     20     32     10     39      8
D23V5, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                           17                             20
  CLUS_3                            7                             32
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                           16                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(8Q24.21) MUTATED       23     16      7     10
  AMP PEAK 23(8Q24.21) WILD-TYPE     44     51     36      7
D23V6, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           23                             44
  CLUS_2                           16                             51
  CLUS_3                            7                             36
  CLUS_4                           10                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(8Q24.21) MUTATED      142     32     40
  AMP PEAK 23(8Q24.21) WILD-TYPE     92    121    110
D23V7, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                          142                             92
  CLUS_2                           32                            121
  CLUS_3                           40                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(8Q24.21) MUTATED       91     11     25      9     39     25
  AMP PEAK 23(8Q24.21) WILD-TYPE     32     42     22     56     69     41
                                vv
clus                             CLUS_7
  AMP PEAK 23(8Q24.21) MUTATED       14
  AMP PEAK 23(8Q24.21) WILD-TYPE     61
D23V8, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           91                             32
  CLUS_2                           11                             42
  CLUS_3                           25                             22
  CLUS_4                            9                             56
  CLUS_5                           39                             69
  CLUS_6                           25                             41
  CLUS_7                           14                             61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(8Q24.21) MUTATED      135     38     38
  AMP PEAK 23(8Q24.21) WILD-TYPE     88    112    119
D23V9, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                          135                             88
  CLUS_2                           38                            112
  CLUS_3                           38                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(8Q24.21) MUTATED       83      7     38     83
  AMP PEAK 23(8Q24.21) WILD-TYPE    136     51     99     33
D23V10, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           83                            136
  CLUS_2                            7                             51
  CLUS_3                           38                             99
  CLUS_4                           83                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(8Q24.21) MUTATED       98     40     36
  AMP PEAK 23(8Q24.21) WILD-TYPE     74     56     94
D23V11, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           98                             74
  CLUS_2                           40                             56
  CLUS_3                           36                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(8Q24.21) MUTATED       88     32     54
  AMP PEAK 23(8Q24.21) WILD-TYPE     56     83     85
D23V12, multiclass
        clus
vv       AMP PEAK 23(8Q24.21) MUTATED AMP PEAK 23(8Q24.21) WILD-TYPE
  CLUS_1                           88                             56
  CLUS_2                           32                             83
  CLUS_3                           54                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(9P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(9P24.2) MUTATED        3      4      0      0
  AMP PEAK 24(9P24.2) WILD-TYPE     11     13     12     10
D24V1, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                            13
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(9P24.2) MUTATED        4      2      1      0      0
  AMP PEAK 24(9P24.2) WILD-TYPE     10      7      6      7     16
D24V2, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           2                             7
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(9P24.2) MUTATED       59      4      1      0      1
  AMP PEAK 24(9P24.2) WILD-TYPE    110    301     18      9     36
D24V3, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          59                           110
  CLUS_2                           4                           301
  CLUS_3                           1                            18
  CLUS_4                           0                             9
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(9P24.2) MUTATED       42      7      5
  AMP PEAK 24(9P24.2) WILD-TYPE    123     82    166
D24V4, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          42                           123
  CLUS_2                           7                            82
  CLUS_3                           5                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(9P24.2) MUTATED        5      9      0      0      1      1
  AMP PEAK 24(9P24.2) WILD-TYPE     36     28     39     12     40     23
D24V5, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           9                            28
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           1                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(9P24.2) MUTATED       12      2      2      0
  AMP PEAK 24(9P24.2) WILD-TYPE     55     65     41     17
D24V6, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           2                            65
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(9P24.2) MUTATED       57      3      5
  AMP PEAK 24(9P24.2) WILD-TYPE    177    150    145
D24V7, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          57                           177
  CLUS_2                           3                           150
  CLUS_3                           5                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(9P24.2) MUTATED       41      0      6      2     12      4
  AMP PEAK 24(9P24.2) WILD-TYPE     82     53     41     63     96     62
                               vv
clus                            CLUS_7
  AMP PEAK 24(9P24.2) MUTATED        0
  AMP PEAK 24(9P24.2) WILD-TYPE     75
D24V8, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          41                            82
  CLUS_2                           0                            53
  CLUS_3                           6                            41
  CLUS_4                           2                            63
  CLUS_5                          12                            96
  CLUS_6                           4                            62
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(9P24.2) MUTATED       54      8      2
  AMP PEAK 24(9P24.2) WILD-TYPE    169    142    155
D24V9, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          54                           169
  CLUS_2                           8                           142
  CLUS_3                           2                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(9P24.2) MUTATED       21      2      3     38
  AMP PEAK 24(9P24.2) WILD-TYPE    198     56    134     78
D24V10, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          21                           198
  CLUS_2                           2                            56
  CLUS_3                           3                           134
  CLUS_4                          38                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(9P24.2) MUTATED       35     11      6
  AMP PEAK 24(9P24.2) WILD-TYPE    137     85    124
D24V11, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          35                           137
  CLUS_2                          11                            85
  CLUS_3                           6                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(9P24.2) MUTATED       31      5     16
  AMP PEAK 24(9P24.2) WILD-TYPE    113    110    123
D24V12, multiclass
        clus
vv       AMP PEAK 24(9P24.2) MUTATED AMP PEAK 24(9P24.2) WILD-TYPE
  CLUS_1                          31                           113
  CLUS_2                           5                           110
  CLUS_3                          16                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(9Q34.3) MUTATED        0      4      1      1
  AMP PEAK 25(9Q34.3) WILD-TYPE     14     13     11      9
D25V1, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                            13
  CLUS_3                           1                            11
  CLUS_4                           1                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(9Q34.3) MUTATED        0      4      1      0      1
  AMP PEAK 25(9Q34.3) WILD-TYPE     14      5      6      7     15
D25V2, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           1                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(9Q34.3) MUTATED       35      2      0      1      1
  AMP PEAK 25(9Q34.3) WILD-TYPE    134    303     19      8     36
D25V3, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          35                           134
  CLUS_2                           2                           303
  CLUS_3                           0                            19
  CLUS_4                           1                             8
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(9Q34.3) MUTATED       22      6      2
  AMP PEAK 25(9Q34.3) WILD-TYPE    143     83    169
D25V4, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          22                           143
  CLUS_2                           6                            83
  CLUS_3                           2                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(9Q34.3) MUTATED        2      4      0      0      2      2
  AMP PEAK 25(9Q34.3) WILD-TYPE     39     33     39     12     39     22
D25V5, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           4                            33
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           2                            39
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(9Q34.3) MUTATED        5      3      1      1
  AMP PEAK 25(9Q34.3) WILD-TYPE     62     64     42     16
D25V6, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                           5                            62
  CLUS_2                           3                            64
  CLUS_3                           1                            42
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(9Q34.3) MUTATED       34      3      1
  AMP PEAK 25(9Q34.3) WILD-TYPE    200    150    149
D25V7, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          34                           200
  CLUS_2                           3                           150
  CLUS_3                           1                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(9Q34.3) MUTATED       30      2      2      0      2      2
  AMP PEAK 25(9Q34.3) WILD-TYPE     93     51     45     65    106     64
                               vv
clus                            CLUS_7
  AMP PEAK 25(9Q34.3) MUTATED        0
  AMP PEAK 25(9Q34.3) WILD-TYPE     75
D25V8, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          30                            93
  CLUS_2                           2                            51
  CLUS_3                           2                            45
  CLUS_4                           0                            65
  CLUS_5                           2                           106
  CLUS_6                           2                            64
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(9Q34.3) MUTATED       28      4      3
  AMP PEAK 25(9Q34.3) WILD-TYPE    195    146    154
D25V9, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          28                           195
  CLUS_2                           4                           146
  CLUS_3                           3                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(9Q34.3) MUTATED       10      1      2     22
  AMP PEAK 25(9Q34.3) WILD-TYPE    209     57    135     94
D25V10, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          10                           209
  CLUS_2                           1                            57
  CLUS_3                           2                           135
  CLUS_4                          22                            94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(9Q34.3) MUTATED       16     10      4
  AMP PEAK 25(9Q34.3) WILD-TYPE    156     86    126
D25V11, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          16                           156
  CLUS_2                          10                            86
  CLUS_3                           4                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(9Q34.3) MUTATED       18      2     10
  AMP PEAK 25(9Q34.3) WILD-TYPE    126    113    129
D25V12, multiclass
        clus
vv       AMP PEAK 25(9Q34.3) MUTATED AMP PEAK 25(9Q34.3) WILD-TYPE
  CLUS_1                          18                           126
  CLUS_2                           2                           113
  CLUS_3                          10                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(10Q22.2) MUTATED        2      7      8      2
  AMP PEAK 26(10Q22.2) WILD-TYPE     12     10      4      8
D26V1, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            7                             10
  CLUS_3                            8                              4
  CLUS_4                            2                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(10Q22.2) MUTATED        4      5      2      0      8
  AMP PEAK 26(10Q22.2) WILD-TYPE     10      4      5      7      8
D26V2, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            2                              5
  CLUS_4                            0                              7
  CLUS_5                            8                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(10Q22.2) MUTATED       66     45      8      4     20
  AMP PEAK 26(10Q22.2) WILD-TYPE    103    260     11      5     17
D26V3, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           66                            103
  CLUS_2                           45                            260
  CLUS_3                            8                             11
  CLUS_4                            4                              5
  CLUS_5                           20                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(10Q22.2) MUTATED       50     18     41
  AMP PEAK 26(10Q22.2) WILD-TYPE    115     71    130
D26V4, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           50                            115
  CLUS_2                           18                             71
  CLUS_3                           41                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(10Q22.2) MUTATED        9      9     10      2     14     11
  AMP PEAK 26(10Q22.2) WILD-TYPE     32     28     29     10     27     13
D26V5, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                            9                             28
  CLUS_3                           10                             29
  CLUS_4                            2                             10
  CLUS_5                           14                             27
  CLUS_6                           11                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(10Q22.2) MUTATED       18     20     10      7
  AMP PEAK 26(10Q22.2) WILD-TYPE     49     47     33     10
D26V6, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           18                             49
  CLUS_2                           20                             47
  CLUS_3                           10                             33
  CLUS_4                            7                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(10Q22.2) MUTATED       74     28     40
  AMP PEAK 26(10Q22.2) WILD-TYPE    160    125    110
D26V7, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           74                            160
  CLUS_2                           28                            125
  CLUS_3                           40                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(10Q22.2) MUTATED       49     15     10     10     22     21
  AMP PEAK 26(10Q22.2) WILD-TYPE     74     38     37     55     86     45
                                vv
clus                             CLUS_7
  AMP PEAK 26(10Q22.2) MUTATED       15
  AMP PEAK 26(10Q22.2) WILD-TYPE     60
D26V8, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           49                             74
  CLUS_2                           15                             38
  CLUS_3                           10                             37
  CLUS_4                           10                             55
  CLUS_5                           22                             86
  CLUS_6                           21                             45
  CLUS_7                           15                             60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(10Q22.2) MUTATED       62     38     41
  AMP PEAK 26(10Q22.2) WILD-TYPE    161    112    116
D26V9, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           62                            161
  CLUS_2                           38                            112
  CLUS_3                           41                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(10Q22.2) MUTATED       43     19     39     40
  AMP PEAK 26(10Q22.2) WILD-TYPE    176     39     98     76
D26V10, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           43                            176
  CLUS_2                           19                             39
  CLUS_3                           39                             98
  CLUS_4                           40                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(10Q22.2) MUTATED       43     24     31
  AMP PEAK 26(10Q22.2) WILD-TYPE    129     72     99
D26V11, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           43                            129
  CLUS_2                           24                             72
  CLUS_3                           31                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(10Q22.2) MUTATED       38     33     27
  AMP PEAK 26(10Q22.2) WILD-TYPE    106     82    112
D26V12, multiclass
        clus
vv       AMP PEAK 26(10Q22.2) MUTATED AMP PEAK 26(10Q22.2) WILD-TYPE
  CLUS_1                           38                            106
  CLUS_2                           33                             82
  CLUS_3                           27                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11P11.2) MUTATED        0      6      0      0
  AMP PEAK 27(11P11.2) WILD-TYPE     14     11     12     10
D27V1, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(11P11.2) MUTATED        2      4      0      0      0
  AMP PEAK 27(11P11.2) WILD-TYPE     12      5      7      7     16
D27V2, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(11P11.2) MUTATED       43      1      4      0      3
  AMP PEAK 27(11P11.2) WILD-TYPE    126    304     15      9     34
D27V3, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           43                            126
  CLUS_2                            1                            304
  CLUS_3                            4                             15
  CLUS_4                            0                              9
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11P11.2) MUTATED       30      9      4
  AMP PEAK 27(11P11.2) WILD-TYPE    135     80    167
D27V4, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           30                            135
  CLUS_2                            9                             80
  CLUS_3                            4                            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(11P11.2) MUTATED        4      4      1      0      1      6
  AMP PEAK 27(11P11.2) WILD-TYPE     37     33     38     12     40     18
D27V5, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            4                             33
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11P11.2) MUTATED        6      5      1      4
  AMP PEAK 27(11P11.2) WILD-TYPE     61     62     42     13
D27V6, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            6                             61
  CLUS_2                            5                             62
  CLUS_3                            1                             42
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11P11.2) MUTATED       42      3      6
  AMP PEAK 27(11P11.2) WILD-TYPE    192    150    144
D27V7, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           42                            192
  CLUS_2                            3                            150
  CLUS_3                            6                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(11P11.2) MUTATED       35      1      2      2      6      4
  AMP PEAK 27(11P11.2) WILD-TYPE     88     52     45     63    102     62
                                vv
clus                             CLUS_7
  AMP PEAK 27(11P11.2) MUTATED        1
  AMP PEAK 27(11P11.2) WILD-TYPE     74
D27V8, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           35                             88
  CLUS_2                            1                             52
  CLUS_3                            2                             45
  CLUS_4                            2                             63
  CLUS_5                            6                            102
  CLUS_6                            4                             62
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11P11.2) MUTATED       40      4      6
  AMP PEAK 27(11P11.2) WILD-TYPE    183    146    151
D27V9, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           40                            183
  CLUS_2                            4                            146
  CLUS_3                            6                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11P11.2) MUTATED       14      1      4     31
  AMP PEAK 27(11P11.2) WILD-TYPE    205     57    133     85
D27V10, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           14                            205
  CLUS_2                            1                             57
  CLUS_3                            4                            133
  CLUS_4                           31                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11P11.2) MUTATED       24     10      6
  AMP PEAK 27(11P11.2) WILD-TYPE    148     86    124
D27V11, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           24                            148
  CLUS_2                           10                             86
  CLUS_3                            6                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11P11.2) MUTATED       18      5     17
  AMP PEAK 27(11P11.2) WILD-TYPE    126    110    122
D27V12, multiclass
        clus
vv       AMP PEAK 27(11P11.2) MUTATED AMP PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           18                            126
  CLUS_2                            5                            110
  CLUS_3                           17                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(11Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(11Q13.2) MUTATED        0      6      0      0
  AMP PEAK 28(11Q13.2) WILD-TYPE     14     11     12     10
D28V1, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(11Q13.2) MUTATED        2      4      0      0      0
  AMP PEAK 28(11Q13.2) WILD-TYPE     12      5      7      7     16
D28V2, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(11Q13.2) MUTATED       59      5      5      0      5
  AMP PEAK 28(11Q13.2) WILD-TYPE    110    300     14      9     32
D28V3, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           59                            110
  CLUS_2                            5                            300
  CLUS_3                            5                             14
  CLUS_4                            0                              9
  CLUS_5                            5                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(11Q13.2) MUTATED       43      8     12
  AMP PEAK 28(11Q13.2) WILD-TYPE    122     81    159
D28V4, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           43                            122
  CLUS_2                            8                             81
  CLUS_3                           12                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(11Q13.2) MUTATED        4      6      3      1      1      6
  AMP PEAK 28(11Q13.2) WILD-TYPE     37     31     36     11     40     18
D28V5, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            6                             31
  CLUS_3                            3                             36
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(11Q13.2) MUTATED        5      9      3      4
  AMP PEAK 28(11Q13.2) WILD-TYPE     62     58     40     13
D28V6, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                            5                             62
  CLUS_2                            9                             58
  CLUS_3                            3                             40
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(11Q13.2) MUTATED       53      5     15
  AMP PEAK 28(11Q13.2) WILD-TYPE    181    148    135
D28V7, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           53                            181
  CLUS_2                            5                            148
  CLUS_3                           15                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(11Q13.2) MUTATED       39      1      2      2     16     10
  AMP PEAK 28(11Q13.2) WILD-TYPE     84     52     45     63     92     56
                                vv
clus                             CLUS_7
  AMP PEAK 28(11Q13.2) MUTATED        3
  AMP PEAK 28(11Q13.2) WILD-TYPE     72
D28V8, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           39                             84
  CLUS_2                            1                             52
  CLUS_3                            2                             45
  CLUS_4                            2                             63
  CLUS_5                           16                             92
  CLUS_6                           10                             56
  CLUS_7                            3                             72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(11Q13.2) MUTATED       48      9     15
  AMP PEAK 28(11Q13.2) WILD-TYPE    175    141    142
D28V9, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           48                            175
  CLUS_2                            9                            141
  CLUS_3                           15                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(11Q13.2) MUTATED       28      1     12     31
  AMP PEAK 28(11Q13.2) WILD-TYPE    191     57    125     85
D28V10, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           28                            191
  CLUS_2                            1                             57
  CLUS_3                           12                            125
  CLUS_4                           31                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(11Q13.2) MUTATED       34     11     14
  AMP PEAK 28(11Q13.2) WILD-TYPE    138     85    116
D28V11, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           34                            138
  CLUS_2                           11                             85
  CLUS_3                           14                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(11Q13.2) MUTATED       32     13     14
  AMP PEAK 28(11Q13.2) WILD-TYPE    112    102    125
D28V12, multiclass
        clus
vv       AMP PEAK 28(11Q13.2) MUTATED AMP PEAK 28(11Q13.2) WILD-TYPE
  CLUS_1                           32                            112
  CLUS_2                           13                            102
  CLUS_3                           14                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(11Q14.1) MUTATED        1      3      0      0
  AMP PEAK 29(11Q14.1) WILD-TYPE     13     14     12     10
D29V1, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(11Q14.1) MUTATED        2      2      0      0      0
  AMP PEAK 29(11Q14.1) WILD-TYPE     12      7      7      7     16
D29V2, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(11Q14.1) MUTATED       47      3      4      0      5
  AMP PEAK 29(11Q14.1) WILD-TYPE    122    302     15      9     32
D29V3, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           47                            122
  CLUS_2                            3                            302
  CLUS_3                            4                             15
  CLUS_4                            0                              9
  CLUS_5                            5                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(11Q14.1) MUTATED       35      7      8
  AMP PEAK 29(11Q14.1) WILD-TYPE    130     82    163
D29V4, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           35                            130
  CLUS_2                            7                             82
  CLUS_3                            8                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(11Q14.1) MUTATED        3      3      3      1      1      4
  AMP PEAK 29(11Q14.1) WILD-TYPE     38     34     36     11     40     20
D29V5, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            3                             34
  CLUS_3                            3                             36
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(11Q14.1) MUTATED        3      7      2      3
  AMP PEAK 29(11Q14.1) WILD-TYPE     64     60     41     14
D29V6, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                            3                             64
  CLUS_2                            7                             60
  CLUS_3                            2                             41
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(11Q14.1) MUTATED       44      5      9
  AMP PEAK 29(11Q14.1) WILD-TYPE    190    148    141
D29V7, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           44                            190
  CLUS_2                            5                            148
  CLUS_3                            9                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(11Q14.1) MUTATED       33      1      4      2      9      7
  AMP PEAK 29(11Q14.1) WILD-TYPE     90     52     43     63     99     59
                                vv
clus                             CLUS_7
  AMP PEAK 29(11Q14.1) MUTATED        2
  AMP PEAK 29(11Q14.1) WILD-TYPE     73
D29V8, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           33                             90
  CLUS_2                            1                             52
  CLUS_3                            4                             43
  CLUS_4                            2                             63
  CLUS_5                            9                             99
  CLUS_6                            7                             59
  CLUS_7                            2                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(11Q14.1) MUTATED       40      7     12
  AMP PEAK 29(11Q14.1) WILD-TYPE    183    143    145
D29V9, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           40                            183
  CLUS_2                            7                            143
  CLUS_3                           12                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(11Q14.1) MUTATED       23      1      8     27
  AMP PEAK 29(11Q14.1) WILD-TYPE    196     57    129     89
D29V10, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           23                            196
  CLUS_2                            1                             57
  CLUS_3                            8                            129
  CLUS_4                           27                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(11Q14.1) MUTATED       30      9      9
  AMP PEAK 29(11Q14.1) WILD-TYPE    142     87    121
D29V11, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           30                            142
  CLUS_2                            9                             87
  CLUS_3                            9                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(11Q14.1) MUTATED       26      9     13
  AMP PEAK 29(11Q14.1) WILD-TYPE    118    106    126
D29V12, multiclass
        clus
vv       AMP PEAK 29(11Q14.1) MUTATED AMP PEAK 29(11Q14.1) WILD-TYPE
  CLUS_1                           26                            118
  CLUS_2                            9                            106
  CLUS_3                           13                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12P12.1) MUTATED        1      3      3      0
  AMP PEAK 30(12P12.1) WILD-TYPE     13     14      9     10
D30V1, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            3                              9
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(12P12.1) MUTATED        3      2      1      0      1
  AMP PEAK 30(12P12.1) WILD-TYPE     11      7      6      7     15
D30V2, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(12P12.1) MUTATED       61     16      7      3      6
  AMP PEAK 30(12P12.1) WILD-TYPE    108    289     12      6     31
D30V3, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           61                            108
  CLUS_2                           16                            289
  CLUS_3                            7                             12
  CLUS_4                            3                              6
  CLUS_5                            6                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12P12.1) MUTATED       55     12     10
  AMP PEAK 30(12P12.1) WILD-TYPE    110     77    161
D30V4, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           55                            110
  CLUS_2                           12                             77
  CLUS_3                           10                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(12P12.1) MUTATED        5      7      5      0      4      5
  AMP PEAK 30(12P12.1) WILD-TYPE     36     30     34     12     37     19
D30V5, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            7                             30
  CLUS_3                            5                             34
  CLUS_4                            0                             12
  CLUS_5                            4                             37
  CLUS_6                            5                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12P12.1) MUTATED       10      9      5      2
  AMP PEAK 30(12P12.1) WILD-TYPE     57     58     38     15
D30V6, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            9                             58
  CLUS_3                            5                             38
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12P12.1) MUTATED       70     11     12
  AMP PEAK 30(12P12.1) WILD-TYPE    164    142    138
D30V7, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           70                            164
  CLUS_2                           11                            142
  CLUS_3                           12                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(12P12.1) MUTATED       48      2     11      6     13      4
  AMP PEAK 30(12P12.1) WILD-TYPE     75     51     36     59     95     62
                                vv
clus                             CLUS_7
  AMP PEAK 30(12P12.1) MUTATED        9
  AMP PEAK 30(12P12.1) WILD-TYPE     66
D30V8, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           48                             75
  CLUS_2                            2                             51
  CLUS_3                           11                             36
  CLUS_4                            6                             59
  CLUS_5                           13                             95
  CLUS_6                            4                             62
  CLUS_7                            9                             66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12P12.1) MUTATED       65     16     12
  AMP PEAK 30(12P12.1) WILD-TYPE    158    134    145
D30V9, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           65                            158
  CLUS_2                           16                            134
  CLUS_3                           12                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12P12.1) MUTATED       34      5     12     42
  AMP PEAK 30(12P12.1) WILD-TYPE    185     53    125     74
D30V10, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           34                            185
  CLUS_2                            5                             53
  CLUS_3                           12                            125
  CLUS_4                           42                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12P12.1) MUTATED       47     13     14
  AMP PEAK 30(12P12.1) WILD-TYPE    125     83    116
D30V11, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           47                            125
  CLUS_2                           13                             83
  CLUS_3                           14                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12P12.1) MUTATED       44     10     20
  AMP PEAK 30(12P12.1) WILD-TYPE    100    105    119
D30V12, multiclass
        clus
vv       AMP PEAK 30(12P12.1) MUTATED AMP PEAK 30(12P12.1) WILD-TYPE
  CLUS_1                           44                            100
  CLUS_2                           10                            105
  CLUS_3                           20                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 31(12Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(12Q13.11) MUTATED        2      4      3      0
  AMP PEAK 31(12Q13.11) WILD-TYPE     12     13      9     10
D31V1, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             4                              13
  CLUS_3                             3                               9
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(12Q13.11) MUTATED        4      3      1      0      1
  AMP PEAK 31(12Q13.11) WILD-TYPE     10      6      6      7     15
D31V2, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             3                               6
  CLUS_3                             1                               6
  CLUS_4                             0                               7
  CLUS_5                             1                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(12Q13.11) MUTATED       59     13      7      3      5
  AMP PEAK 31(12Q13.11) WILD-TYPE    110    292     12      6     32
D31V3, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            59                             110
  CLUS_2                            13                             292
  CLUS_3                             7                              12
  CLUS_4                             3                               6
  CLUS_5                             5                              32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(12Q13.11) MUTATED       49     15      7
  AMP PEAK 31(12Q13.11) WILD-TYPE    116     74    164
D31V4, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            49                             116
  CLUS_2                            15                              74
  CLUS_3                             7                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(12Q13.11) MUTATED        5      7      4      0      3      3
  AMP PEAK 31(12Q13.11) WILD-TYPE     36     30     35     12     38     21
D31V5, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                             5                              36
  CLUS_2                             7                              30
  CLUS_3                             4                              35
  CLUS_4                             0                              12
  CLUS_5                             3                              38
  CLUS_6                             3                              21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(12Q13.11) MUTATED       10      7      3      2
  AMP PEAK 31(12Q13.11) WILD-TYPE     57     60     40     15
D31V6, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            10                              57
  CLUS_2                             7                              60
  CLUS_3                             3                              40
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(12Q13.11) MUTATED       66      9     11
  AMP PEAK 31(12Q13.11) WILD-TYPE    168    144    139
D31V7, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            66                             168
  CLUS_2                             9                             144
  CLUS_3                            11                             139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(12Q13.11) MUTATED       45      1     12      6     11      4
  AMP PEAK 31(12Q13.11) WILD-TYPE     78     52     35     59     97     62
                                 vv
clus                              CLUS_7
  AMP PEAK 31(12Q13.11) MUTATED        7
  AMP PEAK 31(12Q13.11) WILD-TYPE     68
D31V8, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            45                              78
  CLUS_2                             1                              52
  CLUS_3                            12                              35
  CLUS_4                             6                              59
  CLUS_5                            11                              97
  CLUS_6                             4                              62
  CLUS_7                             7                              68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(12Q13.11) MUTATED       62     14     11
  AMP PEAK 31(12Q13.11) WILD-TYPE    161    136    146
D31V9, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            62                             161
  CLUS_2                            14                             136
  CLUS_3                            11                             146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(12Q13.11) MUTATED       30      3     11     43
  AMP PEAK 31(12Q13.11) WILD-TYPE    189     55    126     73
D31V10, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            30                             189
  CLUS_2                             3                              55
  CLUS_3                            11                             126
  CLUS_4                            43                              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(12Q13.11) MUTATED       41     14     11
  AMP PEAK 31(12Q13.11) WILD-TYPE    131     82    119
D31V11, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            41                             131
  CLUS_2                            14                              82
  CLUS_3                            11                             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(12Q13.11) MUTATED       37      9     20
  AMP PEAK 31(12Q13.11) WILD-TYPE    107    106    119
D31V12, multiclass
        clus
vv       AMP PEAK 31(12Q13.11) MUTATED AMP PEAK 31(12Q13.11) WILD-TYPE
  CLUS_1                            37                             107
  CLUS_2                             9                             106
  CLUS_3                            20                             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 32(12Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(12Q13.2) MUTATED        2      5      4      0
  AMP PEAK 32(12Q13.2) WILD-TYPE     12     12      8     10
D32V1, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            5                             12
  CLUS_3                            4                              8
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(12Q13.2) MUTATED        4      4      2      0      1
  AMP PEAK 32(12Q13.2) WILD-TYPE     10      5      5      7     15
D32V2, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            4                              5
  CLUS_3                            2                              5
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(12Q13.2) MUTATED       68     16      6      3      7
  AMP PEAK 32(12Q13.2) WILD-TYPE    101    289     13      6     30
D32V3, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           68                            101
  CLUS_2                           16                            289
  CLUS_3                            6                             13
  CLUS_4                            3                              6
  CLUS_5                            7                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(12Q13.2) MUTATED       55     14     13
  AMP PEAK 32(12Q13.2) WILD-TYPE    110     75    158
D32V4, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           55                            110
  CLUS_2                           14                             75
  CLUS_3                           13                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(12Q13.2) MUTATED        6      8      4      0      3      4
  AMP PEAK 32(12Q13.2) WILD-TYPE     35     29     35     12     38     20
D32V5, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            8                             29
  CLUS_3                            4                             35
  CLUS_4                            0                             12
  CLUS_5                            3                             38
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(12Q13.2) MUTATED       10     10      3      2
  AMP PEAK 32(12Q13.2) WILD-TYPE     57     57     40     15
D32V6, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                           10                             57
  CLUS_3                            3                             40
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(12Q13.2) MUTATED       75      9     15
  AMP PEAK 32(12Q13.2) WILD-TYPE    159    144    135
D32V7, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           75                            159
  CLUS_2                            9                            144
  CLUS_3                           15                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(12Q13.2) MUTATED       46      1     16      6     15      7
  AMP PEAK 32(12Q13.2) WILD-TYPE     77     52     31     59     93     59
                                vv
clus                             CLUS_7
  AMP PEAK 32(12Q13.2) MUTATED        8
  AMP PEAK 32(12Q13.2) WILD-TYPE     67
D32V8, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           46                             77
  CLUS_2                            1                             52
  CLUS_3                           16                             31
  CLUS_4                            6                             59
  CLUS_5                           15                             93
  CLUS_6                            7                             59
  CLUS_7                            8                             67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(12Q13.2) MUTATED       71     13     14
  AMP PEAK 32(12Q13.2) WILD-TYPE    152    137    143
D32V9, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           71                            152
  CLUS_2                           13                            137
  CLUS_3                           14                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(12Q13.2) MUTATED       33      3     15     47
  AMP PEAK 32(12Q13.2) WILD-TYPE    186     55    122     69
D32V10, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           33                            186
  CLUS_2                            3                             55
  CLUS_3                           15                            122
  CLUS_4                           47                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(12Q13.2) MUTATED       53     12     13
  AMP PEAK 32(12Q13.2) WILD-TYPE    119     84    117
D32V11, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           53                            119
  CLUS_2                           12                             84
  CLUS_3                           13                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(12Q13.2) MUTATED       44     13     21
  AMP PEAK 32(12Q13.2) WILD-TYPE    100    102    118
D32V12, multiclass
        clus
vv       AMP PEAK 32(12Q13.2) MUTATED AMP PEAK 32(12Q13.2) WILD-TYPE
  CLUS_1                           44                            100
  CLUS_2                           13                            102
  CLUS_3                           21                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 33(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(13Q34) MUTATED        1      2      0      0
  AMP PEAK 33(13Q34) WILD-TYPE     13     15     12     10
D33V1, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                           15
  CLUS_3                          0                           12
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(13Q34) MUTATED        1      2      0      0      0
  AMP PEAK 33(13Q34) WILD-TYPE     13      7      7      7     16
D33V2, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                            7
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(13Q34) MUTATED       52      3      0      1      2
  AMP PEAK 33(13Q34) WILD-TYPE    117    302     19      8     35
D33V3, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         52                          117
  CLUS_2                          3                          302
  CLUS_3                          0                           19
  CLUS_4                          1                            8
  CLUS_5                          2                           35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(13Q34) MUTATED       38     11      4
  AMP PEAK 33(13Q34) WILD-TYPE    127     78    167
D33V4, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         38                          127
  CLUS_2                         11                           78
  CLUS_3                          4                          167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(13Q34) MUTATED        2      4      0      0      1      2
  AMP PEAK 33(13Q34) WILD-TYPE     39     33     39     12     40     22
D33V5, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                          2                           39
  CLUS_2                          4                           33
  CLUS_3                          0                           39
  CLUS_4                          0                           12
  CLUS_5                          1                           40
  CLUS_6                          2                           22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(13Q34) MUTATED        6      1      0      2
  AMP PEAK 33(13Q34) WILD-TYPE     61     66     43     15
D33V6, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                          6                           61
  CLUS_2                          1                           66
  CLUS_3                          0                           43
  CLUS_4                          2                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(13Q34) MUTATED       52      3      3
  AMP PEAK 33(13Q34) WILD-TYPE    182    150    147
D33V7, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         52                          182
  CLUS_2                          3                          150
  CLUS_3                          3                          147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 33(13Q34) MUTATED       46      0      5      2      3      1      1
  AMP PEAK 33(13Q34) WILD-TYPE     77     53     42     63    105     65     74
D33V8, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         46                           77
  CLUS_2                          0                           53
  CLUS_3                          5                           42
  CLUS_4                          2                           63
  CLUS_5                          3                          105
  CLUS_6                          1                           65
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(13Q34) MUTATED       52      3      3
  AMP PEAK 33(13Q34) WILD-TYPE    171    147    154
D33V9, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         52                          171
  CLUS_2                          3                          147
  CLUS_3                          3                          154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(13Q34) MUTATED       14      0      4     40
  AMP PEAK 33(13Q34) WILD-TYPE    205     58    133     76
D33V10, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         14                          205
  CLUS_2                          0                           58
  CLUS_3                          4                          133
  CLUS_4                         40                           76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(13Q34) MUTATED       33     13      6
  AMP PEAK 33(13Q34) WILD-TYPE    139     83    124
D33V11, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         33                          139
  CLUS_2                         13                           83
  CLUS_3                          6                          124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(13Q34) MUTATED       32      3     17
  AMP PEAK 33(13Q34) WILD-TYPE    112    112    122
D33V12, multiclass
        clus
vv       AMP PEAK 33(13Q34) MUTATED AMP PEAK 33(13Q34) WILD-TYPE
  CLUS_1                         32                          112
  CLUS_2                          3                          112
  CLUS_3                         17                          122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = AMP PEAK 34(14Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(14Q24.3) MUTATED        1      6      1      0
  AMP PEAK 34(14Q24.3) WILD-TYPE     13     11     11     10
D34V1, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(14Q24.3) MUTATED        1      5      0      1      1
  AMP PEAK 34(14Q24.3) WILD-TYPE     13      4      7      6     15
D34V2, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            1                              6
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(14Q24.3) MUTATED       52      4      2      0      6
  AMP PEAK 34(14Q24.3) WILD-TYPE    117    301     17      9     31
D34V3, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           52                            117
  CLUS_2                            4                            301
  CLUS_3                            2                             17
  CLUS_4                            0                              9
  CLUS_5                            6                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(14Q24.3) MUTATED       37      9      8
  AMP PEAK 34(14Q24.3) WILD-TYPE    128     80    163
D34V4, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           37                            128
  CLUS_2                            9                             80
  CLUS_3                            8                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(14Q24.3) MUTATED        5      5      1      1      0      3
  AMP PEAK 34(14Q24.3) WILD-TYPE     36     32     38     11     41     21
D34V5, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            5                             32
  CLUS_3                            1                             38
  CLUS_4                            1                             11
  CLUS_5                            0                             41
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(14Q24.3) MUTATED        8      3      2      2
  AMP PEAK 34(14Q24.3) WILD-TYPE     59     64     41     15
D34V6, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(14Q24.3) MUTATED       54      3      7
  AMP PEAK 34(14Q24.3) WILD-TYPE    180    150    143
D34V7, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           54                            180
  CLUS_2                            3                            150
  CLUS_3                            7                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(14Q24.3) MUTATED       40      1      8      1      9      1
  AMP PEAK 34(14Q24.3) WILD-TYPE     83     52     39     64     99     65
                                vv
clus                             CLUS_7
  AMP PEAK 34(14Q24.3) MUTATED        4
  AMP PEAK 34(14Q24.3) WILD-TYPE     71
D34V8, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           40                             83
  CLUS_2                            1                             52
  CLUS_3                            8                             39
  CLUS_4                            1                             64
  CLUS_5                            9                             99
  CLUS_6                            1                             65
  CLUS_7                            4                             71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(14Q24.3) MUTATED       44     10      8
  AMP PEAK 34(14Q24.3) WILD-TYPE    179    140    149
D34V9, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           44                            179
  CLUS_2                           10                            140
  CLUS_3                            8                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(14Q24.3) MUTATED       15      1      9     37
  AMP PEAK 34(14Q24.3) WILD-TYPE    204     57    128     79
D34V10, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           15                            204
  CLUS_2                            1                             57
  CLUS_3                            9                            128
  CLUS_4                           37                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(14Q24.3) MUTATED       28     15     10
  AMP PEAK 34(14Q24.3) WILD-TYPE    144     81    120
D34V11, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           28                            144
  CLUS_2                           15                             81
  CLUS_3                           10                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(14Q24.3) MUTATED       23      8     22
  AMP PEAK 34(14Q24.3) WILD-TYPE    121    107    117
D34V12, multiclass
        clus
vv       AMP PEAK 34(14Q24.3) MUTATED AMP PEAK 34(14Q24.3) WILD-TYPE
  CLUS_1                           23                            121
  CLUS_2                            8                            107
  CLUS_3                           22                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = AMP PEAK 35(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(14Q32.33) MUTATED        2      4      1      0
  AMP PEAK 35(14Q32.33) WILD-TYPE     12     13     11     10
D35V1, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             4                              13
  CLUS_3                             1                              11
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(14Q32.33) MUTATED        2      3      0      1      1
  AMP PEAK 35(14Q32.33) WILD-TYPE     12      6      7      6     15
D35V2, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             3                               6
  CLUS_3                             0                               7
  CLUS_4                             1                               6
  CLUS_5                             1                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(14Q32.33) MUTATED       67      4      2      0      6
  AMP PEAK 35(14Q32.33) WILD-TYPE    102    301     17      9     31
D35V3, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            67                             102
  CLUS_2                             4                             301
  CLUS_3                             2                              17
  CLUS_4                             0                               9
  CLUS_5                             6                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(14Q32.33) MUTATED       48     11      9
  AMP PEAK 35(14Q32.33) WILD-TYPE    117     78    162
D35V4, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            48                             117
  CLUS_2                            11                              78
  CLUS_3                             9                             162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(14Q32.33) MUTATED        4      5      2      1      0      4
  AMP PEAK 35(14Q32.33) WILD-TYPE     37     32     37     11     41     20
D35V5, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                             5                              32
  CLUS_3                             2                              37
  CLUS_4                             1                              11
  CLUS_5                             0                              41
  CLUS_6                             4                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(14Q32.33) MUTATED        7      5      2      2
  AMP PEAK 35(14Q32.33) WILD-TYPE     60     62     41     15
D35V6, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                             7                              60
  CLUS_2                             5                              62
  CLUS_3                             2                              41
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(14Q32.33) MUTATED       61      4     13
  AMP PEAK 35(14Q32.33) WILD-TYPE    173    149    137
D35V7, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            61                             173
  CLUS_2                             4                             149
  CLUS_3                            13                             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(14Q32.33) MUTATED       38      1     12      3     13      7
  AMP PEAK 35(14Q32.33) WILD-TYPE     85     52     35     62     95     59
                                 vv
clus                              CLUS_7
  AMP PEAK 35(14Q32.33) MUTATED        4
  AMP PEAK 35(14Q32.33) WILD-TYPE     71
D35V8, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            38                              85
  CLUS_2                             1                              52
  CLUS_3                            12                              35
  CLUS_4                             3                              62
  CLUS_5                            13                              95
  CLUS_6                             7                              59
  CLUS_7                             4                              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(14Q32.33) MUTATED       56      9     13
  AMP PEAK 35(14Q32.33) WILD-TYPE    167    141    144
D35V9, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            56                             167
  CLUS_2                             9                             141
  CLUS_3                            13                             144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(14Q32.33) MUTATED       23      1     11     43
  AMP PEAK 35(14Q32.33) WILD-TYPE    196     57    126     73
D35V10, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            23                             196
  CLUS_2                             1                              57
  CLUS_3                            11                             126
  CLUS_4                            43                              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(14Q32.33) MUTATED       41     14     12
  AMP PEAK 35(14Q32.33) WILD-TYPE    131     82    118
D35V11, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            41                             131
  CLUS_2                            14                              82
  CLUS_3                            12                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(14Q32.33) MUTATED       33     12     22
  AMP PEAK 35(14Q32.33) WILD-TYPE    111    103    117
D35V12, multiclass
        clus
vv       AMP PEAK 35(14Q32.33) MUTATED AMP PEAK 35(14Q32.33) WILD-TYPE
  CLUS_1                            33                             111
  CLUS_2                            12                             103
  CLUS_3                            22                             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = AMP PEAK 36(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(15Q26.3) MUTATED        0      1      0      0
  AMP PEAK 36(15Q26.3) WILD-TYPE     14     16     12     10
D36V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 36(15Q26.3) MUTATED"
clus
  AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(15Q26.3) MUTATED        1      0      0      0      0
  AMP PEAK 36(15Q26.3) WILD-TYPE     13      9      7      7     16
D36V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 36(15Q26.3) MUTATED"
clus
  AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"AMP PEAK 36(15Q26.3) WILD-TYPE" "AMP PEAK 36(15Q26.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(15Q26.3) MUTATED       33      2      1      0      2
  AMP PEAK 36(15Q26.3) WILD-TYPE    136    303     18      9     35
D36V3, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           33                            136
  CLUS_2                            2                            303
  CLUS_3                            1                             18
  CLUS_4                            0                              9
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(15Q26.3) MUTATED       22      6      7
  AMP PEAK 36(15Q26.3) WILD-TYPE    143     83    164
D36V4, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           22                            143
  CLUS_2                            6                             83
  CLUS_3                            7                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(15Q26.3) MUTATED        4      1      0      0      0      2
  AMP PEAK 36(15Q26.3) WILD-TYPE     37     36     39     12     41     22
D36V5, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            1                             36
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(15Q26.3) MUTATED        4      2      1      0
  AMP PEAK 36(15Q26.3) WILD-TYPE     63     65     42     17
D36V6, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                            4                             63
  CLUS_2                            2                             65
  CLUS_3                            1                             42
  CLUS_4                            0                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(15Q26.3) MUTATED       32      3      3
  AMP PEAK 36(15Q26.3) WILD-TYPE    202    150    147
D36V7, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           32                            202
  CLUS_2                            3                            150
  CLUS_3                            3                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(15Q26.3) MUTATED       20      1      6      1      8      2
  AMP PEAK 36(15Q26.3) WILD-TYPE    103     52     41     64    100     64
                                vv
clus                             CLUS_7
  AMP PEAK 36(15Q26.3) MUTATED        0
  AMP PEAK 36(15Q26.3) WILD-TYPE     75
D36V8, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           20                            103
  CLUS_2                            1                             52
  CLUS_3                            6                             41
  CLUS_4                            1                             64
  CLUS_5                            8                            100
  CLUS_6                            2                             64
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(15Q26.3) MUTATED       28      7      3
  AMP PEAK 36(15Q26.3) WILD-TYPE    195    143    154
D36V9, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           28                            195
  CLUS_2                            7                            143
  CLUS_3                            3                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(15Q26.3) MUTATED       15      1      3     19
  AMP PEAK 36(15Q26.3) WILD-TYPE    204     57    134     97
D36V10, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           15                            204
  CLUS_2                            1                             57
  CLUS_3                            3                            134
  CLUS_4                           19                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(15Q26.3) MUTATED       20      5      8
  AMP PEAK 36(15Q26.3) WILD-TYPE    152     91    122
D36V11, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           20                            152
  CLUS_2                            5                             91
  CLUS_3                            8                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(15Q26.3) MUTATED       15      5     13
  AMP PEAK 36(15Q26.3) WILD-TYPE    129    110    126
D36V12, multiclass
        clus
vv       AMP PEAK 36(15Q26.3) MUTATED AMP PEAK 36(15Q26.3) WILD-TYPE
  CLUS_1                           15                            129
  CLUS_2                            5                            110
  CLUS_3                           13                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = AMP PEAK 37(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(16P11.2) MUTATED        0      5      0      0
  AMP PEAK 37(16P11.2) WILD-TYPE     14     12     12     10
D37V1, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(16P11.2) MUTATED        1      4      0      0      0
  AMP PEAK 37(16P11.2) WILD-TYPE     13      5      7      7     16
D37V2, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(16P11.2) MUTATED       61      1      1      0      3
  AMP PEAK 37(16P11.2) WILD-TYPE    108    304     18      9     34
D37V3, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           61                            108
  CLUS_2                            1                            304
  CLUS_3                            1                             18
  CLUS_4                            0                              9
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(16P11.2) MUTATED       39     10      8
  AMP PEAK 37(16P11.2) WILD-TYPE    126     79    163
D37V4, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           39                            126
  CLUS_2                           10                             79
  CLUS_3                            8                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 37(16P11.2) MUTATED        6      6      1      0      2      5
  AMP PEAK 37(16P11.2) WILD-TYPE     35     31     38     12     39     19
D37V5, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            6                             31
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            5                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(16P11.2) MUTATED       11      6      1      2
  AMP PEAK 37(16P11.2) WILD-TYPE     56     61     42     15
D37V6, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           11                             56
  CLUS_2                            6                             61
  CLUS_3                            1                             42
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(16P11.2) MUTATED       58      4      4
  AMP PEAK 37(16P11.2) WILD-TYPE    176    149    146
D37V7, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           58                            176
  CLUS_2                            4                            149
  CLUS_3                            4                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 37(16P11.2) MUTATED       46      3      4      1      9      3
  AMP PEAK 37(16P11.2) WILD-TYPE     77     50     43     64     99     63
                                vv
clus                             CLUS_7
  AMP PEAK 37(16P11.2) MUTATED        0
  AMP PEAK 37(16P11.2) WILD-TYPE     75
D37V8, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           46                             77
  CLUS_2                            3                             50
  CLUS_3                            4                             43
  CLUS_4                            1                             64
  CLUS_5                            9                             99
  CLUS_6                            3                             63
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(16P11.2) MUTATED       52      6      5
  AMP PEAK 37(16P11.2) WILD-TYPE    171    144    152
D37V9, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           52                            171
  CLUS_2                            6                            144
  CLUS_3                            5                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(16P11.2) MUTATED       22      3      4     34
  AMP PEAK 37(16P11.2) WILD-TYPE    197     55    133     82
D37V10, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           22                            197
  CLUS_2                            3                             55
  CLUS_3                            4                            133
  CLUS_4                           34                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(16P11.2) MUTATED       33     11      8
  AMP PEAK 37(16P11.2) WILD-TYPE    139     85    122
D37V11, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           33                            139
  CLUS_2                           11                             85
  CLUS_3                            8                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(16P11.2) MUTATED       29      5     18
  AMP PEAK 37(16P11.2) WILD-TYPE    115    110    121
D37V12, multiclass
        clus
vv       AMP PEAK 37(16P11.2) MUTATED AMP PEAK 37(16P11.2) WILD-TYPE
  CLUS_1                           29                            115
  CLUS_2                            5                            110
  CLUS_3                           18                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = AMP PEAK 38(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(17Q11.2) MUTATED        1      4      0      0
  AMP PEAK 38(17Q11.2) WILD-TYPE     13     13     12     10
D38V1, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                             13
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(17Q11.2) MUTATED        2      3      0      0      0
  AMP PEAK 38(17Q11.2) WILD-TYPE     12      6      7      7     16
D38V2, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(17Q11.2) MUTATED       64      4      0      1      2
  AMP PEAK 38(17Q11.2) WILD-TYPE    105    301     19      8     35
D38V3, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           64                            105
  CLUS_2                            4                            301
  CLUS_3                            0                             19
  CLUS_4                            1                              8
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q11.2) MUTATED       54      6      3
  AMP PEAK 38(17Q11.2) WILD-TYPE    111     83    168
D38V4, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           54                            111
  CLUS_2                            6                             83
  CLUS_3                            3                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 38(17Q11.2) MUTATED        5      6      0      1      0      1
  AMP PEAK 38(17Q11.2) WILD-TYPE     36     31     39     11     41     23
D38V5, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            6                             31
  CLUS_3                            0                             39
  CLUS_4                            1                             11
  CLUS_5                            0                             41
  CLUS_6                            1                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(17Q11.2) MUTATED        9      2      1      1
  AMP PEAK 38(17Q11.2) WILD-TYPE     58     65     42     16
D38V6, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            2                             65
  CLUS_3                            1                             42
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q11.2) MUTATED       64      2      4
  AMP PEAK 38(17Q11.2) WILD-TYPE    170    151    146
D38V7, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           64                            170
  CLUS_2                            2                            151
  CLUS_3                            4                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 38(17Q11.2) MUTATED       50      0      9      2      6      3
  AMP PEAK 38(17Q11.2) WILD-TYPE     73     53     38     63    102     63
                                vv
clus                             CLUS_7
  AMP PEAK 38(17Q11.2) MUTATED        0
  AMP PEAK 38(17Q11.2) WILD-TYPE     75
D38V8, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           50                             73
  CLUS_2                            0                             53
  CLUS_3                            9                             38
  CLUS_4                            2                             63
  CLUS_5                            6                            102
  CLUS_6                            3                             63
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q11.2) MUTATED       57      9      2
  AMP PEAK 38(17Q11.2) WILD-TYPE    166    141    155
D38V9, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           57                            166
  CLUS_2                            9                            141
  CLUS_3                            2                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(17Q11.2) MUTATED       23      1      2     42
  AMP PEAK 38(17Q11.2) WILD-TYPE    196     57    135     74
D38V10, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           23                            196
  CLUS_2                            1                             57
  CLUS_3                            2                            135
  CLUS_4                           42                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q11.2) MUTATED       41     12      5
  AMP PEAK 38(17Q11.2) WILD-TYPE    131     84    125
D38V11, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           41                            131
  CLUS_2                           12                             84
  CLUS_3                            5                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q11.2) MUTATED       37      5     16
  AMP PEAK 38(17Q11.2) WILD-TYPE    107    110    123
D38V12, multiclass
        clus
vv       AMP PEAK 38(17Q11.2) MUTATED AMP PEAK 38(17Q11.2) WILD-TYPE
  CLUS_1                           37                            107
  CLUS_2                            5                            110
  CLUS_3                           16                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = AMP PEAK 39(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(17Q12) MUTATED        0      4      1      0
  AMP PEAK 39(17Q12) WILD-TYPE     14     13     11     10
D39V1, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          4                           13
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(17Q12) MUTATED        0      4      1      0      0
  AMP PEAK 39(17Q12) WILD-TYPE     14      5      6      7     16
D39V2, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          4                            5
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(17Q12) MUTATED       67      5      0      1      2
  AMP PEAK 39(17Q12) WILD-TYPE    102    300     19      8     35
D39V3, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         67                          102
  CLUS_2                          5                          300
  CLUS_3                          0                           19
  CLUS_4                          1                            8
  CLUS_5                          2                           35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(17Q12) MUTATED       53      8      2
  AMP PEAK 39(17Q12) WILD-TYPE    112     81    169
D39V4, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         53                          112
  CLUS_2                          8                           81
  CLUS_3                          2                          169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 39(17Q12) MUTATED        4      5      1      1      0      6
  AMP PEAK 39(17Q12) WILD-TYPE     37     32     38     11     41     18
D39V5, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                          4                           37
  CLUS_2                          5                           32
  CLUS_3                          1                           38
  CLUS_4                          1                           11
  CLUS_5                          0                           41
  CLUS_6                          6                           18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(17Q12) MUTATED        8      3      2      4
  AMP PEAK 39(17Q12) WILD-TYPE     59     64     41     13
D39V6, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                          8                           59
  CLUS_2                          3                           64
  CLUS_3                          2                           41
  CLUS_4                          4                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(17Q12) MUTATED       70      2      3
  AMP PEAK 39(17Q12) WILD-TYPE    164    151    147
D39V7, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         70                          164
  CLUS_2                          2                          151
  CLUS_3                          3                          147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 39(17Q12) MUTATED       51      0     15      2      5      2      0
  AMP PEAK 39(17Q12) WILD-TYPE     72     53     32     63    103     64     75
D39V8, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         51                           72
  CLUS_2                          0                           53
  CLUS_3                         15                           32
  CLUS_4                          2                           63
  CLUS_5                          5                          103
  CLUS_6                          2                           64
  CLUS_7                          0                           75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(17Q12) MUTATED       63      7      3
  AMP PEAK 39(17Q12) WILD-TYPE    160    143    154
D39V9, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         63                          160
  CLUS_2                          7                          143
  CLUS_3                          3                          154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(17Q12) MUTATED       19      2      3     49
  AMP PEAK 39(17Q12) WILD-TYPE    200     56    134     67
D39V10, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         19                          200
  CLUS_2                          2                           56
  CLUS_3                          3                          134
  CLUS_4                         49                           67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(17Q12) MUTATED       40     13      7
  AMP PEAK 39(17Q12) WILD-TYPE    132     83    123
D39V11, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         40                          132
  CLUS_2                         13                           83
  CLUS_3                          7                          123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(17Q12) MUTATED       37      3     20
  AMP PEAK 39(17Q12) WILD-TYPE    107    112    119
D39V12, multiclass
        clus
vv       AMP PEAK 39(17Q12) MUTATED AMP PEAK 39(17Q12) WILD-TYPE
  CLUS_1                         37                          107
  CLUS_2                          3                          112
  CLUS_3                         20                          119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = AMP PEAK 40(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(17Q25.1) MUTATED        0     10      1      0
  AMP PEAK 40(17Q25.1) WILD-TYPE     14      7     11     10
D40V1, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                           10                              7
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 40(17Q25.1) MUTATED        2      8      1      0      0
  AMP PEAK 40(17Q25.1) WILD-TYPE     12      1      6      7     16
D40V2, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            8                              1
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 40(17Q25.1) MUTATED       94      5      1      1      4
  AMP PEAK 40(17Q25.1) WILD-TYPE     75    300     18      8     33
D40V3, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           94                             75
  CLUS_2                            5                            300
  CLUS_3                            1                             18
  CLUS_4                            1                              8
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(17Q25.1) MUTATED       64     15      6
  AMP PEAK 40(17Q25.1) WILD-TYPE    101     74    165
D40V4, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           64                            101
  CLUS_2                           15                             74
  CLUS_3                            6                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 40(17Q25.1) MUTATED        6      9      2      1      1      7
  AMP PEAK 40(17Q25.1) WILD-TYPE     35     28     37     11     40     17
D40V5, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            9                             28
  CLUS_3                            2                             37
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            7                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(17Q25.1) MUTATED       12      8      2      4
  AMP PEAK 40(17Q25.1) WILD-TYPE     55     59     41     13
D40V6, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                            8                             59
  CLUS_3                            2                             41
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(17Q25.1) MUTATED       90      5      9
  AMP PEAK 40(17Q25.1) WILD-TYPE    144    148    141
D40V7, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           90                            144
  CLUS_2                            5                            148
  CLUS_3                            9                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 40(17Q25.1) MUTATED       72      0     13      2      9      7
  AMP PEAK 40(17Q25.1) WILD-TYPE     51     53     34     63     99     59
                                vv
clus                             CLUS_7
  AMP PEAK 40(17Q25.1) MUTATED        1
  AMP PEAK 40(17Q25.1) WILD-TYPE     74
D40V8, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           72                             51
  CLUS_2                            0                             53
  CLUS_3                           13                             34
  CLUS_4                            2                             63
  CLUS_5                            9                             99
  CLUS_6                            7                             59
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(17Q25.1) MUTATED       82     11      8
  AMP PEAK 40(17Q25.1) WILD-TYPE    141    139    149
D40V9, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           82                            141
  CLUS_2                           11                            139
  CLUS_3                            8                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(17Q25.1) MUTATED       35      2      6     58
  AMP PEAK 40(17Q25.1) WILD-TYPE    184     56    131     58
D40V10, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           35                            184
  CLUS_2                            2                             56
  CLUS_3                            6                            131
  CLUS_4                           58                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(17Q25.1) MUTATED       53     21      7
  AMP PEAK 40(17Q25.1) WILD-TYPE    119     75    123
D40V11, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           53                            119
  CLUS_2                           21                             75
  CLUS_3                            7                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(17Q25.1) MUTATED       42      9     30
  AMP PEAK 40(17Q25.1) WILD-TYPE    102    106    109
D40V12, multiclass
        clus
vv       AMP PEAK 40(17Q25.1) MUTATED AMP PEAK 40(17Q25.1) WILD-TYPE
  CLUS_1                           42                            102
  CLUS_2                            9                            106
  CLUS_3                           30                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = AMP PEAK 41(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(18P11.31) MUTATED        1      5      1      0
  AMP PEAK 41(18P11.31) WILD-TYPE     13     12     11     10
D41V1, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             5                              12
  CLUS_3                             1                              11
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 41(18P11.31) MUTATED        2      4      0      0      1
  AMP PEAK 41(18P11.31) WILD-TYPE     12      5      7      7     15
D41V2, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             4                               5
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             1                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 41(18P11.31) MUTATED       87      5      3      0      1
  AMP PEAK 41(18P11.31) WILD-TYPE     82    300     16      9     36
D41V3, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            87                              82
  CLUS_2                             5                             300
  CLUS_3                             3                              16
  CLUS_4                             0                               9
  CLUS_5                             1                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(18P11.31) MUTATED       62     16      7
  AMP PEAK 41(18P11.31) WILD-TYPE    103     73    164
D41V4, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            62                             103
  CLUS_2                            16                              73
  CLUS_3                             7                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 41(18P11.31) MUTATED        7      4      0      0      1      5
  AMP PEAK 41(18P11.31) WILD-TYPE     34     33     39     12     40     19
D41V5, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                             7                              34
  CLUS_2                             4                              33
  CLUS_3                             0                              39
  CLUS_4                             0                              12
  CLUS_5                             1                              40
  CLUS_6                             5                              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(18P11.31) MUTATED       10      4      1      2
  AMP PEAK 41(18P11.31) WILD-TYPE     57     63     42     15
D41V6, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            10                              57
  CLUS_2                             4                              63
  CLUS_3                             1                              42
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(18P11.31) MUTATED       85      3      8
  AMP PEAK 41(18P11.31) WILD-TYPE    149    150    142
D41V7, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            85                             149
  CLUS_2                             3                             150
  CLUS_3                             8                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 41(18P11.31) MUTATED       61      1     17      1      9      4
  AMP PEAK 41(18P11.31) WILD-TYPE     62     52     30     64     99     62
                                 vv
clus                              CLUS_7
  AMP PEAK 41(18P11.31) MUTATED        3
  AMP PEAK 41(18P11.31) WILD-TYPE     72
D41V8, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            61                              62
  CLUS_2                             1                              52
  CLUS_3                            17                              30
  CLUS_4                             1                              64
  CLUS_5                             9                              99
  CLUS_6                             4                              62
  CLUS_7                             3                              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(18P11.31) MUTATED       79      9      7
  AMP PEAK 41(18P11.31) WILD-TYPE    144    141    150
D41V9, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            79                             144
  CLUS_2                             9                             141
  CLUS_3                             7                             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(18P11.31) MUTATED       28      1      6     60
  AMP PEAK 41(18P11.31) WILD-TYPE    191     57    131     56
D41V10, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            28                             191
  CLUS_2                             1                              57
  CLUS_3                             6                             131
  CLUS_4                            60                              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(18P11.31) MUTATED       52     23      7
  AMP PEAK 41(18P11.31) WILD-TYPE    120     73    123
D41V11, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            52                             120
  CLUS_2                            23                              73
  CLUS_3                             7                             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(18P11.31) MUTATED       46      6     30
  AMP PEAK 41(18P11.31) WILD-TYPE     98    109    109
D41V12, multiclass
        clus
vv       AMP PEAK 41(18P11.31) MUTATED AMP PEAK 41(18P11.31) WILD-TYPE
  CLUS_1                            46                              98
  CLUS_2                             6                             109
  CLUS_3                            30                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = AMP PEAK 42(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(18Q11.2) MUTATED        0      4      1      0
  AMP PEAK 42(18Q11.2) WILD-TYPE     14     13     11     10
D42V1, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            4                             13
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 42(18Q11.2) MUTATED        1      3      0      0      1
  AMP PEAK 42(18Q11.2) WILD-TYPE     13      6      7      7     15
D42V2, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 42(18Q11.2) MUTATED       63      3      2      0      1
  AMP PEAK 42(18Q11.2) WILD-TYPE    106    302     17      9     36
D42V3, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           63                            106
  CLUS_2                            3                            302
  CLUS_3                            2                             17
  CLUS_4                            0                              9
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(18Q11.2) MUTATED       47     11      3
  AMP PEAK 42(18Q11.2) WILD-TYPE    118     78    168
D42V4, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           47                            118
  CLUS_2                           11                             78
  CLUS_3                            3                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 42(18Q11.2) MUTATED        6      3      1      0      1      3
  AMP PEAK 42(18Q11.2) WILD-TYPE     35     34     38     12     40     21
D42V5, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            3                             34
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(18Q11.2) MUTATED        9      3      0      2
  AMP PEAK 42(18Q11.2) WILD-TYPE     58     64     43     15
D42V6, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            3                             64
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(18Q11.2) MUTATED       63      3      3
  AMP PEAK 42(18Q11.2) WILD-TYPE    171    150    147
D42V7, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           63                            171
  CLUS_2                            3                            150
  CLUS_3                            3                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 42(18Q11.2) MUTATED       49      1      9      1      6      2
  AMP PEAK 42(18Q11.2) WILD-TYPE     74     52     38     64    102     64
                                vv
clus                             CLUS_7
  AMP PEAK 42(18Q11.2) MUTATED        1
  AMP PEAK 42(18Q11.2) WILD-TYPE     74
D42V8, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           49                             74
  CLUS_2                            1                             52
  CLUS_3                            9                             38
  CLUS_4                            1                             64
  CLUS_5                            6                            102
  CLUS_6                            2                             64
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(18Q11.2) MUTATED       57      9      2
  AMP PEAK 42(18Q11.2) WILD-TYPE    166    141    155
D42V9, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           57                            166
  CLUS_2                            9                            141
  CLUS_3                            2                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(18Q11.2) MUTATED       24      1      1     42
  AMP PEAK 42(18Q11.2) WILD-TYPE    195     57    136     74
D42V10, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           24                            195
  CLUS_2                            1                             57
  CLUS_3                            1                            136
  CLUS_4                           42                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(18Q11.2) MUTATED       43     13      1
  AMP PEAK 42(18Q11.2) WILD-TYPE    129     83    129
D42V11, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           43                            129
  CLUS_2                           13                             83
  CLUS_3                            1                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(18Q11.2) MUTATED       35      1     21
  AMP PEAK 42(18Q11.2) WILD-TYPE    109    114    118
D42V12, multiclass
        clus
vv       AMP PEAK 42(18Q11.2) MUTATED AMP PEAK 42(18Q11.2) WILD-TYPE
  CLUS_1                           35                            109
  CLUS_2                            1                            114
  CLUS_3                           21                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = AMP PEAK 43(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(19P13.2) MUTATED        1      7      0      0
  AMP PEAK 43(19P13.2) WILD-TYPE     13     10     12     10
D43V1, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            7                             10
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 43(19P13.2) MUTATED        2      6      0      0      0
  AMP PEAK 43(19P13.2) WILD-TYPE     12      3      7      7     16
D43V2, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            6                              3
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 43(19P13.2) MUTATED       95      0      1      0      3
  AMP PEAK 43(19P13.2) WILD-TYPE     74    305     18      9     34
D43V3, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           95                             74
  CLUS_2                            0                            305
  CLUS_3                            1                             18
  CLUS_4                            0                              9
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19P13.2) MUTATED       65     15      7
  AMP PEAK 43(19P13.2) WILD-TYPE    100     74    164
D43V4, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           65                            100
  CLUS_2                           15                             74
  CLUS_3                            7                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 43(19P13.2) MUTATED        4      9      2      0      1      4
  AMP PEAK 43(19P13.2) WILD-TYPE     37     28     37     12     40     20
D43V5, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            9                             28
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(19P13.2) MUTATED       13      3      0      4
  AMP PEAK 43(19P13.2) WILD-TYPE     54     64     43     13
D43V6, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           13                             54
  CLUS_2                            3                             64
  CLUS_3                            0                             43
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19P13.2) MUTATED       90      2      6
  AMP PEAK 43(19P13.2) WILD-TYPE    144    151    144
D43V7, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           90                            144
  CLUS_2                            2                            151
  CLUS_3                            6                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 43(19P13.2) MUTATED       76      1      6      2      8      4
  AMP PEAK 43(19P13.2) WILD-TYPE     47     52     41     63    100     62
                                vv
clus                             CLUS_7
  AMP PEAK 43(19P13.2) MUTATED        1
  AMP PEAK 43(19P13.2) WILD-TYPE     74
D43V8, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           76                             47
  CLUS_2                            1                             52
  CLUS_3                            6                             41
  CLUS_4                            2                             63
  CLUS_5                            8                            100
  CLUS_6                            4                             62
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19P13.2) MUTATED       82      9      6
  AMP PEAK 43(19P13.2) WILD-TYPE    141    141    151
D43V9, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           82                            141
  CLUS_2                            9                            141
  CLUS_3                            6                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(19P13.2) MUTATED       29      1      6     61
  AMP PEAK 43(19P13.2) WILD-TYPE    190     57    131     55
D43V10, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           29                            190
  CLUS_2                            1                             57
  CLUS_3                            6                            131
  CLUS_4                           61                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19P13.2) MUTATED       51     22      8
  AMP PEAK 43(19P13.2) WILD-TYPE    121     74    122
D43V11, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           51                            121
  CLUS_2                           22                             74
  CLUS_3                            8                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19P13.2) MUTATED       47      8     26
  AMP PEAK 43(19P13.2) WILD-TYPE     97    107    113
D43V12, multiclass
        clus
vv       AMP PEAK 43(19P13.2) MUTATED AMP PEAK 43(19P13.2) WILD-TYPE
  CLUS_1                           47                             97
  CLUS_2                            8                            107
  CLUS_3                           26                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = AMP PEAK 44(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(19Q12) MUTATED        1      8      1      0
  AMP PEAK 44(19Q12) WILD-TYPE     13      9     11     10
D44V1, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          8                            9
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 44(19Q12) MUTATED        2      7      1      0      0
  AMP PEAK 44(19Q12) WILD-TYPE     12      2      6      7     16
D44V2, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          7                            2
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 44(19Q12) MUTATED      113      2      2      0      4
  AMP PEAK 44(19Q12) WILD-TYPE     56    303     17      9     33
D44V3, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                        113                           56
  CLUS_2                          2                          303
  CLUS_3                          2                           17
  CLUS_4                          0                            9
  CLUS_5                          4                           33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(19Q12) MUTATED       80     18      9
  AMP PEAK 44(19Q12) WILD-TYPE     85     71    162
D44V4, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         80                           85
  CLUS_2                         18                           71
  CLUS_3                          9                          162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 44(19Q12) MUTATED        5      6      1      0      1      7
  AMP PEAK 44(19Q12) WILD-TYPE     36     31     38     12     40     17
D44V5, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                          5                           36
  CLUS_2                          6                           31
  CLUS_3                          1                           38
  CLUS_4                          0                           12
  CLUS_5                          1                           40
  CLUS_6                          7                           17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(19Q12) MUTATED       12      4      0      4
  AMP PEAK 44(19Q12) WILD-TYPE     55     63     43     13
D44V6, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         12                           55
  CLUS_2                          4                           63
  CLUS_3                          0                           43
  CLUS_4                          4                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(19Q12) MUTATED      111      3      7
  AMP PEAK 44(19Q12) WILD-TYPE    123    150    143
D44V7, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                        111                          123
  CLUS_2                          3                          150
  CLUS_3                          7                          143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 44(19Q12) MUTATED       81      1     19      3     11      5      1
  AMP PEAK 44(19Q12) WILD-TYPE     42     52     28     62     97     61     74
D44V8, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         81                           42
  CLUS_2                          1                           52
  CLUS_3                         19                           28
  CLUS_4                          3                           62
  CLUS_5                         11                           97
  CLUS_6                          5                           61
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(19Q12) MUTATED       99     10      8
  AMP PEAK 44(19Q12) WILD-TYPE    124    140    149
D44V9, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         99                          124
  CLUS_2                         10                          140
  CLUS_3                          8                          149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(19Q12) MUTATED       37      1      7     72
  AMP PEAK 44(19Q12) WILD-TYPE    182     57    130     44
D44V10, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         37                          182
  CLUS_2                          1                           57
  CLUS_3                          7                          130
  CLUS_4                         72                           44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(19Q12) MUTATED       66     27      8
  AMP PEAK 44(19Q12) WILD-TYPE    106     69    122
D44V11, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         66                          106
  CLUS_2                         27                           69
  CLUS_3                          8                          122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(19Q12) MUTATED       56     10     35
  AMP PEAK 44(19Q12) WILD-TYPE     88    105    104
D44V12, multiclass
        clus
vv       AMP PEAK 44(19Q12) MUTATED AMP PEAK 44(19Q12) WILD-TYPE
  CLUS_1                         56                           88
  CLUS_2                         10                          105
  CLUS_3                         35                          104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = AMP PEAK 45(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20P13) MUTATED        1      4      0      0
  AMP PEAK 45(20P13) WILD-TYPE     13     13     12     10
D45V1, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          4                           13
  CLUS_3                          0                           12
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 45(20P13) MUTATED        2      3      0      0      0
  AMP PEAK 45(20P13) WILD-TYPE     12      6      7      7     16
D45V2, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          3                            6
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 45(20P13) MUTATED       87      8     12      2      8
  AMP PEAK 45(20P13) WILD-TYPE     82    297      7      7     29
D45V3, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         87                           82
  CLUS_2                          8                          297
  CLUS_3                         12                            7
  CLUS_4                          2                            7
  CLUS_5                          8                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20P13) MUTATED       75     16     16
  AMP PEAK 45(20P13) WILD-TYPE     90     73    155
D45V4, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         75                           90
  CLUS_2                         16                           73
  CLUS_3                         16                          155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 45(20P13) MUTATED        6      7      4      0      2      6
  AMP PEAK 45(20P13) WILD-TYPE     35     30     35     12     39     18
D45V5, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                          6                           35
  CLUS_2                          7                           30
  CLUS_3                          4                           35
  CLUS_4                          0                           12
  CLUS_5                          2                           39
  CLUS_6                          6                           18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20P13) MUTATED       11      6      4      4
  AMP PEAK 45(20P13) WILD-TYPE     56     61     39     13
D45V6, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         11                           56
  CLUS_2                          6                           61
  CLUS_3                          4                           39
  CLUS_4                          4                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20P13) MUTATED       90     11     15
  AMP PEAK 45(20P13) WILD-TYPE    144    142    135
D45V7, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         90                          144
  CLUS_2                         11                          142
  CLUS_3                         15                          135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 45(20P13) MUTATED       64      5     16      3     12     14      2
  AMP PEAK 45(20P13) WILD-TYPE     59     48     31     62     96     52     73
D45V8, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         64                           59
  CLUS_2                          5                           48
  CLUS_3                         16                           31
  CLUS_4                          3                           62
  CLUS_5                         12                           96
  CLUS_6                         14                           52
  CLUS_7                          2                           73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20P13) MUTATED       84     17     15
  AMP PEAK 45(20P13) WILD-TYPE    139    133    142
D45V9, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         84                          139
  CLUS_2                         17                          133
  CLUS_3                         15                          142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20P13) MUTATED       43      5     12     56
  AMP PEAK 45(20P13) WILD-TYPE    176     53    125     60
D45V10, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         43                          176
  CLUS_2                          5                           53
  CLUS_3                         12                          125
  CLUS_4                         56                           60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20P13) MUTATED       57     23     18
  AMP PEAK 45(20P13) WILD-TYPE    115     73    112
D45V11, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         57                          115
  CLUS_2                         23                           73
  CLUS_3                         18                          112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20P13) MUTATED       56     13     29
  AMP PEAK 45(20P13) WILD-TYPE     88    102    110
D45V12, multiclass
        clus
vv       AMP PEAK 45(20P13) MUTATED AMP PEAK 45(20P13) WILD-TYPE
  CLUS_1                         56                           88
  CLUS_2                         13                          102
  CLUS_3                         29                          110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = AMP PEAK 46(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q11.21) MUTATED        2      9      0      0
  AMP PEAK 46(20Q11.21) WILD-TYPE     12      8     12     10
D46V1, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             9                               8
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 46(20Q11.21) MUTATED        4      7      0      0      0
  AMP PEAK 46(20Q11.21) WILD-TYPE     10      2      7      7     16
D46V2, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             7                               2
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 46(20Q11.21) MUTATED      120      8     13      3      8
  AMP PEAK 46(20Q11.21) WILD-TYPE     49    297      6      6     29
D46V3, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                           120                              49
  CLUS_2                             8                             297
  CLUS_3                            13                               6
  CLUS_4                             3                               6
  CLUS_5                             8                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q11.21) MUTATED       89     20     24
  AMP PEAK 46(20Q11.21) WILD-TYPE     76     69    147
D46V4, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            89                              76
  CLUS_2                            20                              69
  CLUS_3                            24                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 46(20Q11.21) MUTATED        8     12      2      0      2      8
  AMP PEAK 46(20Q11.21) WILD-TYPE     33     25     37     12     39     16
D46V5, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                             8                              33
  CLUS_2                            12                              25
  CLUS_3                             2                              37
  CLUS_4                             0                              12
  CLUS_5                             2                              39
  CLUS_6                             8                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q11.21) MUTATED       16      8      4      4
  AMP PEAK 46(20Q11.21) WILD-TYPE     51     59     39     13
D46V6, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            16                              51
  CLUS_2                             8                              59
  CLUS_3                             4                              39
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q11.21) MUTATED      119     11     21
  AMP PEAK 46(20Q11.21) WILD-TYPE    115    142    129
D46V7, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                           119                             115
  CLUS_2                            11                             142
  CLUS_3                            21                             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 46(20Q11.21) MUTATED       80      4     21      4     21     17
  AMP PEAK 46(20Q11.21) WILD-TYPE     43     49     26     61     87     49
                                 vv
clus                              CLUS_7
  AMP PEAK 46(20Q11.21) MUTATED        4
  AMP PEAK 46(20Q11.21) WILD-TYPE     71
D46V8, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            80                              43
  CLUS_2                             4                              49
  CLUS_3                            21                              26
  CLUS_4                             4                              61
  CLUS_5                            21                              87
  CLUS_6                            17                              49
  CLUS_7                             4                              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q11.21) MUTATED      108     19     21
  AMP PEAK 46(20Q11.21) WILD-TYPE    115    131    136
D46V9, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                           108                             115
  CLUS_2                            19                             131
  CLUS_3                            21                             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q11.21) MUTATED       47      5     20     76
  AMP PEAK 46(20Q11.21) WILD-TYPE    172     53    117     40
D46V10, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            47                             172
  CLUS_2                             5                              53
  CLUS_3                            20                             117
  CLUS_4                            76                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q11.21) MUTATED       76     26     23
  AMP PEAK 46(20Q11.21) WILD-TYPE     96     70    107
D46V11, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            76                              96
  CLUS_2                            26                              70
  CLUS_3                            23                             107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q11.21) MUTATED       69     22     34
  AMP PEAK 46(20Q11.21) WILD-TYPE     75     93    105
D46V12, multiclass
        clus
vv       AMP PEAK 46(20Q11.21) MUTATED AMP PEAK 46(20Q11.21) WILD-TYPE
  CLUS_1                            69                              75
  CLUS_2                            22                              93
  CLUS_3                            34                             105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = AMP PEAK 47(20Q13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(20Q13.12) MUTATED        1      6      0      0
  AMP PEAK 47(20Q13.12) WILD-TYPE     13     11     12     10
D47V1, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             6                              11
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 47(20Q13.12) MUTATED        3      4      0      0      0
  AMP PEAK 47(20Q13.12) WILD-TYPE     11      5      7      7     16
D47V2, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             4                               5
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 47(20Q13.12) MUTATED      118     10     14      3      7
  AMP PEAK 47(20Q13.12) WILD-TYPE     51    295      5      6     30
D47V3, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                           118                              51
  CLUS_2                            10                             295
  CLUS_3                            14                               5
  CLUS_4                             3                               6
  CLUS_5                             7                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.12) MUTATED       94     20     24
  AMP PEAK 47(20Q13.12) WILD-TYPE     71     69    147
D47V4, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            94                              71
  CLUS_2                            20                              69
  CLUS_3                            24                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 47(20Q13.12) MUTATED        6     12      2      1      3      7
  AMP PEAK 47(20Q13.12) WILD-TYPE     35     25     37     11     38     17
D47V5, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                             6                              35
  CLUS_2                            12                              25
  CLUS_3                             2                              37
  CLUS_4                             1                              11
  CLUS_5                             3                              38
  CLUS_6                             7                              17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(20Q13.12) MUTATED       14      8      5      4
  AMP PEAK 47(20Q13.12) WILD-TYPE     53     59     38     13
D47V6, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            14                              53
  CLUS_2                             8                              59
  CLUS_3                             5                              38
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.12) MUTATED      119     12     20
  AMP PEAK 47(20Q13.12) WILD-TYPE    115    141    130
D47V7, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                           119                             115
  CLUS_2                            12                             141
  CLUS_3                            20                             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 47(20Q13.12) MUTATED       82      4     21      4     21     15
  AMP PEAK 47(20Q13.12) WILD-TYPE     41     49     26     61     87     51
                                 vv
clus                              CLUS_7
  AMP PEAK 47(20Q13.12) MUTATED        4
  AMP PEAK 47(20Q13.12) WILD-TYPE     71
D47V8, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            82                              41
  CLUS_2                             4                              49
  CLUS_3                            21                              26
  CLUS_4                             4                              61
  CLUS_5                            21                              87
  CLUS_6                            15                              51
  CLUS_7                             4                              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.12) MUTATED      110     20     21
  AMP PEAK 47(20Q13.12) WILD-TYPE    113    130    136
D47V9, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                           110                             113
  CLUS_2                            20                             130
  CLUS_3                            21                             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(20Q13.12) MUTATED       52      5     19     75
  AMP PEAK 47(20Q13.12) WILD-TYPE    167     53    118     41
D47V10, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            52                             167
  CLUS_2                             5                              53
  CLUS_3                            19                             118
  CLUS_4                            75                              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.12) MUTATED       77     28     24
  AMP PEAK 47(20Q13.12) WILD-TYPE     95     68    106
D47V11, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            77                              95
  CLUS_2                            28                              68
  CLUS_3                            24                             106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.12) MUTATED       74     21     34
  AMP PEAK 47(20Q13.12) WILD-TYPE     70     94    105
D47V12, multiclass
        clus
vv       AMP PEAK 47(20Q13.12) MUTATED AMP PEAK 47(20Q13.12) WILD-TYPE
  CLUS_1                            74                              70
  CLUS_2                            21                              94
  CLUS_3                            34                             105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = AMP PEAK 48(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(20Q13.33) MUTATED        2      7      0      0
  AMP PEAK 48(20Q13.33) WILD-TYPE     12     10     12     10
D48V1, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             7                              10
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 48(20Q13.33) MUTATED        4      5      0      0      0
  AMP PEAK 48(20Q13.33) WILD-TYPE     10      4      7      7     16
D48V2, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             5                               4
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 48(20Q13.33) MUTATED      117     11     15      3      7
  AMP PEAK 48(20Q13.33) WILD-TYPE     52    294      4      6     30
D48V3, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                           117                              52
  CLUS_2                            11                             294
  CLUS_3                            15                               4
  CLUS_4                             3                               6
  CLUS_5                             7                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(20Q13.33) MUTATED       91     21     24
  AMP PEAK 48(20Q13.33) WILD-TYPE     74     68    147
D48V4, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            91                              74
  CLUS_2                            21                              68
  CLUS_3                            24                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 48(20Q13.33) MUTATED        6     11      4      1      3      7
  AMP PEAK 48(20Q13.33) WILD-TYPE     35     26     35     11     38     17
D48V5, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                             6                              35
  CLUS_2                            11                              26
  CLUS_3                             4                              35
  CLUS_4                             1                              11
  CLUS_5                             3                              38
  CLUS_6                             7                              17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(20Q13.33) MUTATED       13      9      6      4
  AMP PEAK 48(20Q13.33) WILD-TYPE     54     58     37     13
D48V6, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            13                              54
  CLUS_2                             9                              58
  CLUS_3                             6                              37
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(20Q13.33) MUTATED      118     14     21
  AMP PEAK 48(20Q13.33) WILD-TYPE    116    139    129
D48V7, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                           118                             116
  CLUS_2                            14                             139
  CLUS_3                            21                             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 48(20Q13.33) MUTATED       78      4     24      5     22     16
  AMP PEAK 48(20Q13.33) WILD-TYPE     45     49     23     60     86     50
                                 vv
clus                              CLUS_7
  AMP PEAK 48(20Q13.33) MUTATED        4
  AMP PEAK 48(20Q13.33) WILD-TYPE     71
D48V8, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            78                              45
  CLUS_2                             4                              49
  CLUS_3                            24                              23
  CLUS_4                             5                              60
  CLUS_5                            22                              86
  CLUS_6                            16                              50
  CLUS_7                             4                              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(20Q13.33) MUTATED      109     19     22
  AMP PEAK 48(20Q13.33) WILD-TYPE    114    131    135
D48V9, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                           109                             114
  CLUS_2                            19                             131
  CLUS_3                            22                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(20Q13.33) MUTATED       53      6     19     72
  AMP PEAK 48(20Q13.33) WILD-TYPE    166     52    118     44
D48V10, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            53                             166
  CLUS_2                             6                              52
  CLUS_3                            19                             118
  CLUS_4                            72                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(20Q13.33) MUTATED       76     28     23
  AMP PEAK 48(20Q13.33) WILD-TYPE     96     68    107
D48V11, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            76                              96
  CLUS_2                            28                              68
  CLUS_3                            23                             107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(20Q13.33) MUTATED       71     21     35
  AMP PEAK 48(20Q13.33) WILD-TYPE     73     94    104
D48V12, multiclass
        clus
vv       AMP PEAK 48(20Q13.33) MUTATED AMP PEAK 48(20Q13.33) WILD-TYPE
  CLUS_1                            71                              73
  CLUS_2                            21                              94
  CLUS_3                            35                             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = AMP PEAK 49(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(22Q12.2) MUTATED        1      3      0      0
  AMP PEAK 49(22Q12.2) WILD-TYPE     13     14     12     10
D49V1, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 49(22Q12.2) MUTATED        2      2      0      0      0
  AMP PEAK 49(22Q12.2) WILD-TYPE     12      7      7      7     16
D49V2, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 49(22Q12.2) MUTATED       56      4      1      1      0
  AMP PEAK 49(22Q12.2) WILD-TYPE    113    301     18      8     37
D49V3, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           56                            113
  CLUS_2                            4                            301
  CLUS_3                            1                             18
  CLUS_4                            1                              8
  CLUS_5                            0                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(22Q12.2) MUTATED       49      8      0
  AMP PEAK 49(22Q12.2) WILD-TYPE    116     81    171
D49V4, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           49                            116
  CLUS_2                            8                             81
  CLUS_3                            0                            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 49(22Q12.2) MUTATED        3      3      0      0      0      2
  AMP PEAK 49(22Q12.2) WILD-TYPE     38     34     39     12     41     22
D49V5, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            3                             34
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(22Q12.2) MUTATED        6      0      0      2
  AMP PEAK 49(22Q12.2) WILD-TYPE     61     67     43     15
D49V6, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                            6                             61
  CLUS_2                            0                             67
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(22Q12.2) MUTATED       60      1      0
  AMP PEAK 49(22Q12.2) WILD-TYPE    174    152    150
D49V7, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           60                            174
  CLUS_2                            1                            152
  CLUS_3                            0                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 49(22Q12.2) MUTATED       43      1     15      0      2      0
  AMP PEAK 49(22Q12.2) WILD-TYPE     80     52     32     65    106     66
                                vv
clus                             CLUS_7
  AMP PEAK 49(22Q12.2) MUTATED        0
  AMP PEAK 49(22Q12.2) WILD-TYPE     75
D49V8, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           43                             80
  CLUS_2                            1                             52
  CLUS_3                           15                             32
  CLUS_4                            0                             65
  CLUS_5                            2                            106
  CLUS_6                            0                             66
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(22Q12.2) MUTATED       59      2      0
  AMP PEAK 49(22Q12.2) WILD-TYPE    164    148    157
D49V9, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           59                            164
  CLUS_2                            2                            148
  CLUS_3                            0                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(22Q12.2) MUTATED       16      1      0     44
  AMP PEAK 49(22Q12.2) WILD-TYPE    203     57    137     72
D49V10, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           16                            203
  CLUS_2                            1                             57
  CLUS_3                            0                            137
  CLUS_4                           44                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(22Q12.2) MUTATED       43     10      3
  AMP PEAK 49(22Q12.2) WILD-TYPE    129     86    127
D49V11, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           43                            129
  CLUS_2                           10                             86
  CLUS_3                            3                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(22Q12.2) MUTATED       40      1     15
  AMP PEAK 49(22Q12.2) WILD-TYPE    104    114    124
D49V12, multiclass
        clus
vv       AMP PEAK 49(22Q12.2) MUTATED AMP PEAK 49(22Q12.2) WILD-TYPE
  CLUS_1                           40                            104
  CLUS_2                            1                            114
  CLUS_3                           15                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = AMP PEAK 50(XP11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(XP11.23) MUTATED        1      4      2      0
  AMP PEAK 50(XP11.23) WILD-TYPE     13     13     10     10
D50V1, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                             13
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 50(XP11.23) MUTATED        2      2      1      1      1
  AMP PEAK 50(XP11.23) WILD-TYPE     12      7      6      6     15
D50V2, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            1                              6
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 50(XP11.23) MUTATED       48      8      8      3     23
  AMP PEAK 50(XP11.23) WILD-TYPE    121    297     11      6     14
D50V3, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           48                            121
  CLUS_2                            8                            297
  CLUS_3                            8                             11
  CLUS_4                            3                              6
  CLUS_5                           23                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XP11.23) MUTATED       43     11     17
  AMP PEAK 50(XP11.23) WILD-TYPE    122     78    154
D50V4, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           43                            122
  CLUS_2                           11                             78
  CLUS_3                           17                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 50(XP11.23) MUTATED        6      7      6      2      3      4
  AMP PEAK 50(XP11.23) WILD-TYPE     35     30     33     10     38     20
D50V5, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            7                             30
  CLUS_3                            6                             33
  CLUS_4                            2                             10
  CLUS_5                            3                             38
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(XP11.23) MUTATED        8     10      7      3
  AMP PEAK 50(XP11.23) WILD-TYPE     59     57     36     14
D50V6, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                           10                             57
  CLUS_3                            7                             36
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XP11.23) MUTATED       57     15     18
  AMP PEAK 50(XP11.23) WILD-TYPE    177    138    132
D50V7, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           57                            177
  CLUS_2                           15                            138
  CLUS_3                           18                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 50(XP11.23) MUTATED       38      5     10      6     14      9
  AMP PEAK 50(XP11.23) WILD-TYPE     85     48     37     59     94     57
                                vv
clus                             CLUS_7
  AMP PEAK 50(XP11.23) MUTATED        8
  AMP PEAK 50(XP11.23) WILD-TYPE     67
D50V8, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           38                             85
  CLUS_2                            5                             48
  CLUS_3                           10                             37
  CLUS_4                            6                             59
  CLUS_5                           14                             94
  CLUS_6                            9                             57
  CLUS_7                            8                             67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XP11.23) MUTATED       55     18     16
  AMP PEAK 50(XP11.23) WILD-TYPE    168    132    141
D50V9, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           55                            168
  CLUS_2                           18                            132
  CLUS_3                           16                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(XP11.23) MUTATED       34      6     16     33
  AMP PEAK 50(XP11.23) WILD-TYPE    185     52    121     83
D50V10, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           34                            185
  CLUS_2                            6                             52
  CLUS_3                           16                            121
  CLUS_4                           33                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XP11.23) MUTATED       40     15     13
  AMP PEAK 50(XP11.23) WILD-TYPE    132     81    117
D50V11, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           40                            132
  CLUS_2                           15                             81
  CLUS_3                           13                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XP11.23) MUTATED       32     10     26
  AMP PEAK 50(XP11.23) WILD-TYPE    112    105    113
D50V12, multiclass
        clus
vv       AMP PEAK 50(XP11.23) MUTATED AMP PEAK 50(XP11.23) WILD-TYPE
  CLUS_1                           32                            112
  CLUS_2                           10                            105
  CLUS_3                           26                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = AMP PEAK 51(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 51(XQ28) MUTATED        1      6      2      0
  AMP PEAK 51(XQ28) WILD-TYPE     13     11     10     10
D51V1, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         6                          11
  CLUS_3                         2                          10
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 51(XQ28) MUTATED        1      5      1      1      1
  AMP PEAK 51(XQ28) WILD-TYPE     13      4      6      6     15
D51V2, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         5                           4
  CLUS_3                         1                           6
  CLUS_4                         1                           6
  CLUS_5                         1                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 51(XQ28) MUTATED       49     10      8      3     23
  AMP PEAK 51(XQ28) WILD-TYPE    120    295     11      6     14
D51V3, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        49                         120
  CLUS_2                        10                         295
  CLUS_3                         8                          11
  CLUS_4                         3                           6
  CLUS_5                        23                          14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(XQ28) MUTATED       37     14     20
  AMP PEAK 51(XQ28) WILD-TYPE    128     75    151
D51V4, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        37                         128
  CLUS_2                        14                          75
  CLUS_3                        20                         151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 51(XQ28) MUTATED        4      9      4      2      3      5
  AMP PEAK 51(XQ28) WILD-TYPE     37     28     35     10     38     19
D51V5, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                         4                          37
  CLUS_2                         9                          28
  CLUS_3                         4                          35
  CLUS_4                         2                          10
  CLUS_5                         3                          38
  CLUS_6                         5                          19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 51(XQ28) MUTATED       10      7      7      3
  AMP PEAK 51(XQ28) WILD-TYPE     57     60     36     14
D51V6, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        10                          57
  CLUS_2                         7                          60
  CLUS_3                         7                          36
  CLUS_4                         3                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(XQ28) MUTATED       57     17     19
  AMP PEAK 51(XQ28) WILD-TYPE    177    136    131
D51V7, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        57                         177
  CLUS_2                        17                         136
  CLUS_3                        19                         131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 51(XQ28) MUTATED       37      6     10      6     17      9      8
  AMP PEAK 51(XQ28) WILD-TYPE     86     47     37     59     91     57     67
D51V8, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        37                          86
  CLUS_2                         6                          47
  CLUS_3                        10                          37
  CLUS_4                         6                          59
  CLUS_5                        17                          91
  CLUS_6                         9                          57
  CLUS_7                         8                          67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(XQ28) MUTATED       52     22     16
  AMP PEAK 51(XQ28) WILD-TYPE    171    128    141
D51V9, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        52                         171
  CLUS_2                        22                         128
  CLUS_3                        16                         141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 51(XQ28) MUTATED       36      7     16     31
  AMP PEAK 51(XQ28) WILD-TYPE    183     51    121     85
D51V10, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        36                         183
  CLUS_2                         7                          51
  CLUS_3                        16                         121
  CLUS_4                        31                          85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(XQ28) MUTATED       40     16     14
  AMP PEAK 51(XQ28) WILD-TYPE    132     80    116
D51V11, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        40                         132
  CLUS_2                        16                          80
  CLUS_3                        14                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(XQ28) MUTATED       30     14     26
  AMP PEAK 51(XQ28) WILD-TYPE    114    101    113
D51V12, multiclass
        clus
vv       AMP PEAK 51(XQ28) MUTATED AMP PEAK 51(XQ28) WILD-TYPE
  CLUS_1                        30                         114
  CLUS_2                        14                         101
  CLUS_3                        26                         113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        2      6      0      0
  DEL PEAK  1(1P36.21) WILD-TYPE     12     11     12     10
D52V1, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED        3      5      0      0      0
  DEL PEAK  1(1P36.21) WILD-TYPE     11      4      7      7     16
D52V2, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED       60      3      3      5      0
  DEL PEAK  1(1P36.21) WILD-TYPE    109    302     16      4     37
D52V3, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           60                            109
  CLUS_2                            3                            302
  CLUS_3                            3                             16
  CLUS_4                            5                              4
  CLUS_5                            0                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       39     15      6
  DEL PEAK  1(1P36.21) WILD-TYPE    126     74    165
D52V4, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           39                            126
  CLUS_2                           15                             74
  CLUS_3                            6                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        3      8      0      0      1      3
  DEL PEAK  1(1P36.21) WILD-TYPE     38     29     39     12     40     21
D52V5, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            8                             29
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        8      3      2      2
  DEL PEAK  1(1P36.21) WILD-TYPE     59     64     41     15
D52V6, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       61      6      4
  DEL PEAK  1(1P36.21) WILD-TYPE    173    147    146
D52V7, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           61                            173
  CLUS_2                            6                            147
  CLUS_3                            4                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED       42      1      9      4     12      3
  DEL PEAK  1(1P36.21) WILD-TYPE     81     52     38     61     96     63
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.21) MUTATED        0
  DEL PEAK  1(1P36.21) WILD-TYPE     75
D52V8, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           42                             81
  CLUS_2                            1                             52
  CLUS_3                            9                             38
  CLUS_4                            4                             61
  CLUS_5                           12                             96
  CLUS_6                            3                             63
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       53      9      6
  DEL PEAK  1(1P36.21) WILD-TYPE    170    141    151
D52V9, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           53                            170
  CLUS_2                            9                            141
  CLUS_3                            6                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED       27      0      3     38
  DEL PEAK  1(1P36.21) WILD-TYPE    192     58    134     78
D52V10, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           27                            192
  CLUS_2                            0                             58
  CLUS_3                            3                            134
  CLUS_4                           38                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       24     25     11
  DEL PEAK  1(1P36.21) WILD-TYPE    148     71    119
D52V11, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           24                            148
  CLUS_2                           25                             71
  CLUS_3                           11                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       27      5     28
  DEL PEAK  1(1P36.21) WILD-TYPE    117    110    111
D52V12, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           27                            117
  CLUS_2                            5                            110
  CLUS_3                           28                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK  2(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED        1      5      0      0
  DEL PEAK  2(1P36.11) WILD-TYPE     13     12     12     10
D53V1, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED        2      4      0      0      0
  DEL PEAK  2(1P36.11) WILD-TYPE     12      5      7      7     16
D53V2, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED       72      2      4      5      0
  DEL PEAK  2(1P36.11) WILD-TYPE     97    303     15      4     37
D53V3, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           72                             97
  CLUS_2                            2                            303
  CLUS_3                            4                             15
  CLUS_4                            5                              4
  CLUS_5                            0                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       56     12      6
  DEL PEAK  2(1P36.11) WILD-TYPE    109     77    165
D53V4, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           56                            109
  CLUS_2                           12                             77
  CLUS_3                            6                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P36.11) MUTATED        3      7      0      1      1      2
  DEL PEAK  2(1P36.11) WILD-TYPE     38     30     39     11     40     22
D53V5, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            7                             30
  CLUS_3                            0                             39
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED        7      3      3      1
  DEL PEAK  2(1P36.11) WILD-TYPE     60     64     40     16
D53V6, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            3                             64
  CLUS_3                            3                             40
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       73      6      4
  DEL PEAK  2(1P36.11) WILD-TYPE    161    147    146
D53V7, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           73                            161
  CLUS_2                            6                            147
  CLUS_3                            4                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P36.11) MUTATED       51      1     10      4     14      3
  DEL PEAK  2(1P36.11) WILD-TYPE     72     52     37     61     94     63
                                vv
clus                             CLUS_7
  DEL PEAK  2(1P36.11) MUTATED        0
  DEL PEAK  2(1P36.11) WILD-TYPE     75
D53V8, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           51                             72
  CLUS_2                            1                             52
  CLUS_3                           10                             37
  CLUS_4                            4                             61
  CLUS_5                           14                             94
  CLUS_6                            3                             63
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       64      9      7
  DEL PEAK  2(1P36.11) WILD-TYPE    159    141    150
D53V9, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           64                            159
  CLUS_2                            9                            141
  CLUS_3                            7                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED       33      0      3     44
  DEL PEAK  2(1P36.11) WILD-TYPE    186     58    134     72
D53V10, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           33                            186
  CLUS_2                            0                             58
  CLUS_3                            3                            134
  CLUS_4                           44                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       40     22     11
  DEL PEAK  2(1P36.11) WILD-TYPE    132     74    119
D53V11, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           40                            132
  CLUS_2                           22                             74
  CLUS_3                           11                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       42      6     25
  DEL PEAK  2(1P36.11) WILD-TYPE    102    109    114
D53V12, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           42                            102
  CLUS_2                            6                            109
  CLUS_3                           25                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        0      1      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE     14     16     12     10
D54V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2P25.3) MUTATED"
clus
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED        0      1      0      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE     14      8      7      7     16
D54V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2P25.3) MUTATED"
clus
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED       24      2      0      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE    145    303     19      9     37
D54V3, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          24                           145
  CLUS_2                           2                           303
  CLUS_3                           0                            19
  CLUS_4                           0                             9
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       19      4      2
  DEL PEAK  3(2P25.3) WILD-TYPE    146     85    169
D54V4, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          19                           146
  CLUS_2                           4                            85
  CLUS_3                           2                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED        2      0      1      0      0      2
  DEL PEAK  3(2P25.3) WILD-TYPE     39     37     38     12     41     22
D54V5, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           0                            37
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        2      1      0      2
  DEL PEAK  3(2P25.3) WILD-TYPE     65     66     43     15
D54V6, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           2                            65
  CLUS_2                           1                            66
  CLUS_3                           0                            43
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       22      1      3
  DEL PEAK  3(2P25.3) WILD-TYPE    212    152    147
D54V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          22                           212
  CLUS_2                           1                           152
  CLUS_3                           3                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       16      1      3      0      3      3
  DEL PEAK  3(2P25.3) WILD-TYPE    107     52     44     65    105     63
                               vv
clus                            CLUS_7
  DEL PEAK  3(2P25.3) MUTATED        0
  DEL PEAK  3(2P25.3) WILD-TYPE     75
D54V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          16                           107
  CLUS_2                           1                            52
  CLUS_3                           3                            44
  CLUS_4                           0                            65
  CLUS_5                           3                           105
  CLUS_6                           3                            63
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       20      3      3
  DEL PEAK  3(2P25.3) WILD-TYPE    203    147    154
D54V9, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          20                           203
  CLUS_2                           3                           147
  CLUS_3                           3                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        7      1      3     15
  DEL PEAK  3(2P25.3) WILD-TYPE    212     57    134    101
D54V10, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           7                           212
  CLUS_2                           1                            57
  CLUS_3                           3                           134
  CLUS_4                          15                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       14      5      4
  DEL PEAK  3(2P25.3) WILD-TYPE    158     91    126
D54V11, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          14                           158
  CLUS_2                           5                            91
  CLUS_3                           4                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       13      4      6
  DEL PEAK  3(2P25.3) WILD-TYPE    131    111    133
D54V12, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          13                           131
  CLUS_2                           4                           111
  CLUS_3                           6                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK  4(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        0      4      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     14     13     12     10
D55V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                            13
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED        0      4      0      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     14      5      7      7     16
D55V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED       46      0      2      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    123    305     17      9     37
D55V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          46                           123
  CLUS_2                           0                           305
  CLUS_3                           2                            17
  CLUS_4                           0                             9
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       30      8      4
  DEL PEAK  4(2Q22.1) WILD-TYPE    135     81    167
D55V4, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          30                           135
  CLUS_2                           8                            81
  CLUS_3                           4                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED        2      3      0      0      0      3
  DEL PEAK  4(2Q22.1) WILD-TYPE     39     34     39     12     41     21
D55V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           3                            34
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        4      1      0      3
  DEL PEAK  4(2Q22.1) WILD-TYPE     63     66     43     14
D55V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           1                            66
  CLUS_3                           0                            43
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       43      0      5
  DEL PEAK  4(2Q22.1) WILD-TYPE    191    153    145
D55V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          43                           191
  CLUS_2                           0                           153
  CLUS_3                           5                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED       31      0      3      0      9      5
  DEL PEAK  4(2Q22.1) WILD-TYPE     92     53     44     65     99     61
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q22.1) MUTATED        0
  DEL PEAK  4(2Q22.1) WILD-TYPE     75
D55V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          31                            92
  CLUS_2                           0                            53
  CLUS_3                           3                            44
  CLUS_4                           0                            65
  CLUS_5                           9                            99
  CLUS_6                           5                            61
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       37      5      4
  DEL PEAK  4(2Q22.1) WILD-TYPE    186    145    153
D55V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          37                           186
  CLUS_2                           5                           145
  CLUS_3                           4                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       19      0      4     23
  DEL PEAK  4(2Q22.1) WILD-TYPE    200     58    133     93
D55V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          19                           200
  CLUS_2                           0                            58
  CLUS_3                           4                           133
  CLUS_4                          23                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       29      5      7
  DEL PEAK  4(2Q22.1) WILD-TYPE    143     91    123
D55V11, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          29                           143
  CLUS_2                           5                            91
  CLUS_3                           7                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       26      7      8
  DEL PEAK  4(2Q22.1) WILD-TYPE    118    108    131
D55V12, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          26                           118
  CLUS_2                           7                           108
  CLUS_3                           8                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        0      1      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE     14     16     12     10
D56V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  5(2Q37.3) MUTATED"
clus
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED        0      1      0      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE     14      8      7      7     16
D56V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  5(2Q37.3) MUTATED"
clus
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED       49      1      2      0      1
  DEL PEAK  5(2Q37.3) WILD-TYPE    120    304     17      9     36
D56V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          49                           120
  CLUS_2                           1                           304
  CLUS_3                           2                            17
  CLUS_4                           0                             9
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       35      6      8
  DEL PEAK  5(2Q37.3) WILD-TYPE    130     83    163
D56V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          35                           130
  CLUS_2                           6                            83
  CLUS_3                           8                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED        4      3      0      0      1      2
  DEL PEAK  5(2Q37.3) WILD-TYPE     37     34     39     12     40     22
D56V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           3                            34
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        4      4      1      1
  DEL PEAK  5(2Q37.3) WILD-TYPE     63     63     42     16
D56V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           4                            63
  CLUS_3                           1                            42
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       42      3      7
  DEL PEAK  5(2Q37.3) WILD-TYPE    192    150    143
D56V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          42                           192
  CLUS_2                           3                           150
  CLUS_3                           7                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       24      0      9      3     10      6
  DEL PEAK  5(2Q37.3) WILD-TYPE     99     53     38     62     98     60
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED        0
  DEL PEAK  5(2Q37.3) WILD-TYPE     75
D56V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          24                            99
  CLUS_2                           0                            53
  CLUS_3                           9                            38
  CLUS_4                           3                            62
  CLUS_5                          10                            98
  CLUS_6                           6                            60
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       39      5      8
  DEL PEAK  5(2Q37.3) WILD-TYPE    184    145    149
D56V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          39                           184
  CLUS_2                           5                           145
  CLUS_3                           8                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       21      1      8     22
  DEL PEAK  5(2Q37.3) WILD-TYPE    198     57    129     94
D56V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          21                           198
  CLUS_2                           1                            57
  CLUS_3                           8                           129
  CLUS_4                          22                            94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       26     10     11
  DEL PEAK  5(2Q37.3) WILD-TYPE    146     86    119
D56V11, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          26                           146
  CLUS_2                          10                            86
  CLUS_3                          11                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       23      9     15
  DEL PEAK  5(2Q37.3) WILD-TYPE    121    106    124
D56V12, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          23                           121
  CLUS_2                           9                           106
  CLUS_3                          15                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK  6(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED        1      5      0      0
  DEL PEAK  6(3P14.2) WILD-TYPE     13     12     12     10
D57V1, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED        2      4      0      0      0
  DEL PEAK  6(3P14.2) WILD-TYPE     12      5      7      7     16
D57V2, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED       72      0      4      2      1
  DEL PEAK  6(3P14.2) WILD-TYPE     97    305     15      7     36
D57V3, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          72                            97
  CLUS_2                           0                           305
  CLUS_3                           4                            15
  CLUS_4                           2                             7
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       51     12      5
  DEL PEAK  6(3P14.2) WILD-TYPE    114     77    166
D57V4, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          51                           114
  CLUS_2                          12                            77
  CLUS_3                           5                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P14.2) MUTATED        3     10      1      0      1      2
  DEL PEAK  6(3P14.2) WILD-TYPE     38     27     38     12     40     22
D57V5, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                          10                            27
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       11      3      2      1
  DEL PEAK  6(3P14.2) WILD-TYPE     56     64     41     16
D57V6, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          11                            56
  CLUS_2                           3                            64
  CLUS_3                           2                            41
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       73      1      4
  DEL PEAK  6(3P14.2) WILD-TYPE    161    152    146
D57V7, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          73                           161
  CLUS_2                           1                           152
  CLUS_3                           4                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P14.2) MUTATED       49      0     12      0     12      5
  DEL PEAK  6(3P14.2) WILD-TYPE     74     53     35     65     96     61
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P14.2) MUTATED        0
  DEL PEAK  6(3P14.2) WILD-TYPE     75
D57V8, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          49                            74
  CLUS_2                           0                            53
  CLUS_3                          12                            35
  CLUS_4                           0                            65
  CLUS_5                          12                            96
  CLUS_6                           5                            61
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       62     11      4
  DEL PEAK  6(3P14.2) WILD-TYPE    161    139    153
D57V9, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          62                           161
  CLUS_2                          11                           139
  CLUS_3                           4                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       34      1      3     39
  DEL PEAK  6(3P14.2) WILD-TYPE    185     57    134     77
D57V10, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          34                           185
  CLUS_2                           1                            57
  CLUS_3                           3                           134
  CLUS_4                          39                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       41     16      9
  DEL PEAK  6(3P14.2) WILD-TYPE    131     80    121
D57V11, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          41                           131
  CLUS_2                          16                            80
  CLUS_3                           9                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       42      4     20
  DEL PEAK  6(3P14.2) WILD-TYPE    102    111    119
D57V12, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          42                           102
  CLUS_2                           4                           111
  CLUS_3                          20                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK  7(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        1      3      1      0
  DEL PEAK  7(3Q13.31) WILD-TYPE     13     14     11     10
D58V1, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED        1      3      0      0      1
  DEL PEAK  7(3Q13.31) WILD-TYPE     13      6      7      7     15
D58V2, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED       36      4      0      2      1
  DEL PEAK  7(3Q13.31) WILD-TYPE    133    301     19      7     36
D58V3, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           36                            133
  CLUS_2                            4                            301
  CLUS_3                            0                             19
  CLUS_4                            2                              7
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       24      7      5
  DEL PEAK  7(3Q13.31) WILD-TYPE    141     82    166
D58V4, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           24                            141
  CLUS_2                            7                             82
  CLUS_3                            5                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        0      3      3      0      1      3
  DEL PEAK  7(3Q13.31) WILD-TYPE     41     34     36     12     40     21
D58V5, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            0                             41
  CLUS_2                            3                             34
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        3      3      1      3
  DEL PEAK  7(3Q13.31) WILD-TYPE     64     64     42     14
D58V6, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            3                             64
  CLUS_2                            3                             64
  CLUS_3                            1                             42
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       35      2      6
  DEL PEAK  7(3Q13.31) WILD-TYPE    199    151    144
D58V7, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           35                            199
  CLUS_2                            2                            151
  CLUS_3                            6                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED       28      2      4      0      3      5
  DEL PEAK  7(3Q13.31) WILD-TYPE     95     51     43     65    105     61
                                vv
clus                             CLUS_7
  DEL PEAK  7(3Q13.31) MUTATED        1
  DEL PEAK  7(3Q13.31) WILD-TYPE     74
D58V8, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           28                             95
  CLUS_2                            2                             51
  CLUS_3                            4                             43
  CLUS_4                            0                             65
  CLUS_5                            3                            105
  CLUS_6                            5                             61
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       32      4      5
  DEL PEAK  7(3Q13.31) WILD-TYPE    191    146    152
D58V9, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           32                            191
  CLUS_2                            4                            146
  CLUS_3                            5                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       13      2      4     22
  DEL PEAK  7(3Q13.31) WILD-TYPE    206     56    133     94
D58V10, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           13                            206
  CLUS_2                            2                             56
  CLUS_3                            4                            133
  CLUS_4                           22                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       19     11      4
  DEL PEAK  7(3Q13.31) WILD-TYPE    153     85    126
D58V11, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           19                            153
  CLUS_2                           11                             85
  CLUS_3                            4                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       15      6     13
  DEL PEAK  7(3Q13.31) WILD-TYPE    129    109    126
D58V12, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           15                            129
  CLUS_2                            6                            109
  CLUS_3                           13                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK  8(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        1      6      0      0
  DEL PEAK  8(4P16.3) WILD-TYPE     13     11     12     10
D59V1, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED        2      5      0      0      0
  DEL PEAK  8(4P16.3) WILD-TYPE     12      4      7      7     16
D59V2, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED       79      4      5      4      2
  DEL PEAK  8(4P16.3) WILD-TYPE     90    301     14      5     35
D59V3, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          79                            90
  CLUS_2                           4                           301
  CLUS_3                           5                            14
  CLUS_4                           4                             5
  CLUS_5                           2                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       62     13      7
  DEL PEAK  8(4P16.3) WILD-TYPE    103     76    164
D59V4, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          62                           103
  CLUS_2                          13                            76
  CLUS_3                           7                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED        5      9      0      1      2      5
  DEL PEAK  8(4P16.3) WILD-TYPE     36     28     39     11     39     19
D59V5, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           9                            28
  CLUS_3                           0                            39
  CLUS_4                           1                            11
  CLUS_5                           2                            39
  CLUS_6                           5                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED       10      5      4      3
  DEL PEAK  8(4P16.3) WILD-TYPE     57     62     39     14
D59V6, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          10                            57
  CLUS_2                           5                            62
  CLUS_3                           4                            39
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       79      6      9
  DEL PEAK  8(4P16.3) WILD-TYPE    155    147    141
D59V7, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          79                           155
  CLUS_2                           6                           147
  CLUS_3                           9                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED       55      1     15      2     14      6
  DEL PEAK  8(4P16.3) WILD-TYPE     68     52     32     63     94     60
                               vv
clus                            CLUS_7
  DEL PEAK  8(4P16.3) MUTATED        1
  DEL PEAK  8(4P16.3) WILD-TYPE     74
D59V8, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          55                            68
  CLUS_2                           1                            52
  CLUS_3                          15                            32
  CLUS_4                           2                            63
  CLUS_5                          14                            94
  CLUS_6                           6                            60
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       70     12      9
  DEL PEAK  8(4P16.3) WILD-TYPE    153    138    148
D59V9, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          70                           153
  CLUS_2                          12                           138
  CLUS_3                           9                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED       32      1      6     52
  DEL PEAK  8(4P16.3) WILD-TYPE    187     57    131     64
D59V10, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          32                           187
  CLUS_2                           1                            57
  CLUS_3                           6                           131
  CLUS_4                          52                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       46     24     10
  DEL PEAK  8(4P16.3) WILD-TYPE    126     72    120
D59V11, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          46                           126
  CLUS_2                          24                            72
  CLUS_3                          10                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       45      8     27
  DEL PEAK  8(4P16.3) WILD-TYPE     99    107    112
D59V12, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          45                            99
  CLUS_2                           8                           107
  CLUS_3                          27                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK  9(4P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.2) MUTATED        1      6      0      0
  DEL PEAK  9(4P15.2) WILD-TYPE     13     11     12     10
D60V1, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P15.2) MUTATED        3      4      0      0      0
  DEL PEAK  9(4P15.2) WILD-TYPE     11      5      7      7     16
D60V2, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P15.2) MUTATED       84      3      5      4      2
  DEL PEAK  9(4P15.2) WILD-TYPE     85    302     14      5     35
D60V3, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          84                            85
  CLUS_2                           3                           302
  CLUS_3                           5                            14
  CLUS_4                           4                             5
  CLUS_5                           2                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.2) MUTATED       67     14      6
  DEL PEAK  9(4P15.2) WILD-TYPE     98     75    165
D60V4, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          67                            98
  CLUS_2                          14                            75
  CLUS_3                           6                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P15.2) MUTATED        5      8      0      1      2      5
  DEL PEAK  9(4P15.2) WILD-TYPE     36     29     39     11     39     19
D60V5, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           8                            29
  CLUS_3                           0                            39
  CLUS_4                           1                            11
  CLUS_5                           2                            39
  CLUS_6                           5                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.2) MUTATED        9      5      4      3
  DEL PEAK  9(4P15.2) WILD-TYPE     58     62     39     14
D60V6, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           5                            62
  CLUS_3                           4                            39
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.2) MUTATED       84      6      8
  DEL PEAK  9(4P15.2) WILD-TYPE    150    147    142
D60V7, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          84                           150
  CLUS_2                           6                           147
  CLUS_3                           8                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P15.2) MUTATED       57      1     15      2     17      5
  DEL PEAK  9(4P15.2) WILD-TYPE     66     52     32     63     91     61
                               vv
clus                            CLUS_7
  DEL PEAK  9(4P15.2) MUTATED        1
  DEL PEAK  9(4P15.2) WILD-TYPE     74
D60V8, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          57                            66
  CLUS_2                           1                            52
  CLUS_3                          15                            32
  CLUS_4                           2                            63
  CLUS_5                          17                            91
  CLUS_6                           5                            61
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.2) MUTATED       76     12      8
  DEL PEAK  9(4P15.2) WILD-TYPE    147    138    149
D60V9, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          76                           147
  CLUS_2                          12                           138
  CLUS_3                           8                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.2) MUTATED       36      1      5     54
  DEL PEAK  9(4P15.2) WILD-TYPE    183     57    132     62
D60V10, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          36                           183
  CLUS_2                           1                            57
  CLUS_3                           5                           132
  CLUS_4                          54                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.2) MUTATED       52     24     10
  DEL PEAK  9(4P15.2) WILD-TYPE    120     72    120
D60V11, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          52                           120
  CLUS_2                          24                            72
  CLUS_3                          10                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.2) MUTATED       49      7     30
  DEL PEAK  9(4P15.2) WILD-TYPE     95    108    109
D60V12, multiclass
        clus
vv       DEL PEAK  9(4P15.2) MUTATED DEL PEAK  9(4P15.2) WILD-TYPE
  CLUS_1                          49                            95
  CLUS_2                           7                           108
  CLUS_3                          30                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 10(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED        1      7      0      0
  DEL PEAK 10(4Q22.1) WILD-TYPE     13     10     12     10
D61V1, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED        2      6      0      0      0
  DEL PEAK 10(4Q22.1) WILD-TYPE     12      3      7      7     16
D61V2, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED       94      2      4      4      2
  DEL PEAK 10(4Q22.1) WILD-TYPE     75    303     15      5     35
D61V3, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          94                            75
  CLUS_2                           2                           303
  CLUS_3                           4                            15
  CLUS_4                           4                             5
  CLUS_5                           2                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       71     16      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     94     73    166
D61V4, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          71                            94
  CLUS_2                          16                            73
  CLUS_3                           5                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED        6      8      1      1      1      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     35     29     38     11     40     19
D61V5, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           8                            29
  CLUS_3                           1                            38
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           5                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       11      5      3      3
  DEL PEAK 10(4Q22.1) WILD-TYPE     56     62     40     14
D61V6, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          11                            56
  CLUS_2                           5                            62
  CLUS_3                           3                            40
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       94      5      7
  DEL PEAK 10(4Q22.1) WILD-TYPE    140    148    143
D61V7, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          94                           140
  CLUS_2                           5                           148
  CLUS_3                           7                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED       68      1     12      2     18      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     55     52     35     63     90     61
                               vv
clus                            CLUS_7
  DEL PEAK 10(4Q22.1) MUTATED        0
  DEL PEAK 10(4Q22.1) WILD-TYPE     75
D61V8, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          68                            55
  CLUS_2                           1                            52
  CLUS_3                          12                            35
  CLUS_4                           2                            63
  CLUS_5                          18                            90
  CLUS_6                           5                            61
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       86     10      7
  DEL PEAK 10(4Q22.1) WILD-TYPE    137    140    150
D61V9, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          86                           137
  CLUS_2                          10                           140
  CLUS_3                           7                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       38      0      3     62
  DEL PEAK 10(4Q22.1) WILD-TYPE    181     58    134     54
D61V10, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          38                           181
  CLUS_2                           0                            58
  CLUS_3                           3                           134
  CLUS_4                          62                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       56     26      8
  DEL PEAK 10(4Q22.1) WILD-TYPE    116     70    122
D61V11, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          56                           116
  CLUS_2                          26                            70
  CLUS_3                           8                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       48      5     37
  DEL PEAK 10(4Q22.1) WILD-TYPE     96    110    102
D61V12, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          48                            96
  CLUS_2                           5                           110
  CLUS_3                          37                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 11(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED        1      7      0      0
  DEL PEAK 11(4Q34.3) WILD-TYPE     13     10     12     10
D62V1, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q34.3) MUTATED        2      6      0      0      0
  DEL PEAK 11(4Q34.3) WILD-TYPE     12      3      7      7     16
D62V2, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q34.3) MUTATED      111      6      6      4      3
  DEL PEAK 11(4Q34.3) WILD-TYPE     58    299     13      5     34
D62V3, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                         111                            58
  CLUS_2                           6                           299
  CLUS_3                           6                            13
  CLUS_4                           4                             5
  CLUS_5                           3                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       81     22     11
  DEL PEAK 11(4Q34.3) WILD-TYPE     84     67    160
D62V4, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          81                            84
  CLUS_2                          22                            67
  CLUS_3                          11                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q34.3) MUTATED        6     10      2      1      3      5
  DEL PEAK 11(4Q34.3) WILD-TYPE     35     27     37     11     38     19
D62V5, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                          10                            27
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           3                            38
  CLUS_6                           5                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED       12      7      5      3
  DEL PEAK 11(4Q34.3) WILD-TYPE     55     60     38     14
D62V6, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           7                            60
  CLUS_3                           5                            38
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED      114      8      8
  DEL PEAK 11(4Q34.3) WILD-TYPE    120    145    142
D62V7, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                         114                           120
  CLUS_2                           8                           145
  CLUS_3                           8                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q34.3) MUTATED       81      1     16      3     23      6
  DEL PEAK 11(4Q34.3) WILD-TYPE     42     52     31     62     85     60
                               vv
clus                            CLUS_7
  DEL PEAK 11(4Q34.3) MUTATED        0
  DEL PEAK 11(4Q34.3) WILD-TYPE     75
D62V8, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          81                            42
  CLUS_2                           1                            52
  CLUS_3                          16                            31
  CLUS_4                           3                            62
  CLUS_5                          23                            85
  CLUS_6                           6                            60
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       99     20      8
  DEL PEAK 11(4Q34.3) WILD-TYPE    124    130    149
D62V9, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          99                           124
  CLUS_2                          20                           130
  CLUS_3                           8                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED       51      1      5     70
  DEL PEAK 11(4Q34.3) WILD-TYPE    168     57    132     46
D62V10, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          51                           168
  CLUS_2                           1                            57
  CLUS_3                           5                           132
  CLUS_4                          70                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       66     33     13
  DEL PEAK 11(4Q34.3) WILD-TYPE    106     63    117
D62V11, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          66                           106
  CLUS_2                          33                            63
  CLUS_3                          13                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       59      7     46
  DEL PEAK 11(4Q34.3) WILD-TYPE     85    108     93
D62V12, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          59                            85
  CLUS_2                           7                           108
  CLUS_3                          46                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 12(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED        1      6      0      0
  DEL PEAK 12(5Q12.1) WILD-TYPE     13     11     12     10
D63V1, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q12.1) MUTATED        3      4      0      0      0
  DEL PEAK 12(5Q12.1) WILD-TYPE     11      5      7      7     16
D63V2, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q12.1) MUTATED      103      0      2      2      4
  DEL PEAK 12(5Q12.1) WILD-TYPE     66    305     17      7     33
D63V3, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                         103                            66
  CLUS_2                           0                           305
  CLUS_3                           2                            17
  CLUS_4                           2                             7
  CLUS_5                           4                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       75     14      8
  DEL PEAK 12(5Q12.1) WILD-TYPE     90     75    163
D63V4, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          75                            90
  CLUS_2                          14                            75
  CLUS_3                           8                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED        6      9      1      0      0      6
  DEL PEAK 12(5Q12.1) WILD-TYPE     35     28     38     12     41     18
D63V5, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           9                            28
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       12      5      1      4
  DEL PEAK 12(5Q12.1) WILD-TYPE     55     62     42     13
D63V6, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           5                            62
  CLUS_3                           1                            42
  CLUS_4                           4                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       96      4     10
  DEL PEAK 12(5Q12.1) WILD-TYPE    138    149    140
D63V7, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          96                           138
  CLUS_2                           4                           149
  CLUS_3                          10                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED       69      0     11      2     18     10
  DEL PEAK 12(5Q12.1) WILD-TYPE     54     53     36     63     90     56
                               vv
clus                            CLUS_7
  DEL PEAK 12(5Q12.1) MUTATED        0
  DEL PEAK 12(5Q12.1) WILD-TYPE     75
D63V8, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          69                            54
  CLUS_2                           0                            53
  CLUS_3                          11                            36
  CLUS_4                           2                            63
  CLUS_5                          18                            90
  CLUS_6                          10                            56
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       88     12     10
  DEL PEAK 12(5Q12.1) WILD-TYPE    135    138    147
D63V9, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          88                           135
  CLUS_2                          12                           138
  CLUS_3                          10                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       44      0      8     58
  DEL PEAK 12(5Q12.1) WILD-TYPE    175     58    129     58
D63V10, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          44                           175
  CLUS_2                           0                            58
  CLUS_3                           8                           129
  CLUS_4                          58                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       61     22     12
  DEL PEAK 12(5Q12.1) WILD-TYPE    111     74    118
D63V11, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          61                           111
  CLUS_2                          22                            74
  CLUS_3                          12                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       54     10     31
  DEL PEAK 12(5Q12.1) WILD-TYPE     90    105    108
D63V12, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          54                            90
  CLUS_2                          10                           105
  CLUS_3                          31                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        1      3      0      0
  DEL PEAK 13(6Q26) WILD-TYPE     13     14     12     10
D64V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                          14
  CLUS_3                         0                          12
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        1      3      0      0      0
  DEL PEAK 13(6Q26) WILD-TYPE     13      6      7      7     16
D64V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                           6
  CLUS_3                         0                           7
  CLUS_4                         0                           7
  CLUS_5                         0                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED       39      4      2      1      0
  DEL PEAK 13(6Q26) WILD-TYPE    130    301     17      8     37
D64V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        39                         130
  CLUS_2                         4                         301
  CLUS_3                         2                          17
  CLUS_4                         1                           8
  CLUS_5                         0                          37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       31      8      1
  DEL PEAK 13(6Q26) WILD-TYPE    134     81    170
D64V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        31                         134
  CLUS_2                         8                          81
  CLUS_3                         1                         170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED        2      3      1      0      1      2
  DEL PEAK 13(6Q26) WILD-TYPE     39     34     38     12     40     22
D64V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                          39
  CLUS_2                         3                          34
  CLUS_3                         1                          38
  CLUS_4                         0                          12
  CLUS_5                         1                          40
  CLUS_6                         2                          22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        5      1      1      2
  DEL PEAK 13(6Q26) WILD-TYPE     62     66     42     15
D64V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         5                          62
  CLUS_2                         1                          66
  CLUS_3                         1                          42
  CLUS_4                         2                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       42      2      2
  DEL PEAK 13(6Q26) WILD-TYPE    192    151    148
D64V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        42                         192
  CLUS_2                         2                         151
  CLUS_3                         2                         148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED       36      1      3      0      5      0      1
  DEL PEAK 13(6Q26) WILD-TYPE     87     52     44     65    103     66     74
D64V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        36                          87
  CLUS_2                         1                          52
  CLUS_3                         3                          44
  CLUS_4                         0                          65
  CLUS_5                         5                         103
  CLUS_6                         0                          66
  CLUS_7                         1                          74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       37      6      2
  DEL PEAK 13(6Q26) WILD-TYPE    186    144    155
D64V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        37                         186
  CLUS_2                         6                         144
  CLUS_3                         2                         155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       16      0      1     28
  DEL PEAK 13(6Q26) WILD-TYPE    203     58    136     88
D64V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        16                         203
  CLUS_2                         0                          58
  CLUS_3                         1                         136
  CLUS_4                        28                          88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       23     13      3
  DEL PEAK 13(6Q26) WILD-TYPE    149     83    127
D64V11, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        23                         149
  CLUS_2                        13                          83
  CLUS_3                         3                         127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       19      1     19
  DEL PEAK 13(6Q26) WILD-TYPE    125    114    120
D64V12, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        19                         125
  CLUS_2                         1                         114
  CLUS_3                        19                         120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 14(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        0      8      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE     14      9     12     10
D65V1, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           8                             9
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7P22.3) MUTATED        3      5      0      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE     11      4      7      7     16
D65V2, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7P22.3) MUTATED       65      4      1      1      1
  DEL PEAK 14(7P22.3) WILD-TYPE    104    301     18      8     36
D65V3, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          65                           104
  CLUS_2                           4                           301
  CLUS_3                           1                            18
  CLUS_4                           1                             8
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       45     13      4
  DEL PEAK 14(7P22.3) WILD-TYPE    120     76    167
D65V4, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          45                           120
  CLUS_2                          13                            76
  CLUS_3                           4                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7P22.3) MUTATED        6      5      0      1      0      3
  DEL PEAK 14(7P22.3) WILD-TYPE     35     32     39     11     41     21
D65V5, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           5                            32
  CLUS_3                           0                            39
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        9      2      1      3
  DEL PEAK 14(7P22.3) WILD-TYPE     58     65     42     14
D65V6, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           2                            65
  CLUS_3                           1                            42
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       66      2      4
  DEL PEAK 14(7P22.3) WILD-TYPE    168    151    146
D65V7, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          66                           168
  CLUS_2                           2                           151
  CLUS_3                           4                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7P22.3) MUTATED       51      0      9      0      8      4
  DEL PEAK 14(7P22.3) WILD-TYPE     72     53     38     65    100     62
                               vv
clus                            CLUS_7
  DEL PEAK 14(7P22.3) MUTATED        0
  DEL PEAK 14(7P22.3) WILD-TYPE     75
D65V8, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          51                            72
  CLUS_2                           0                            53
  CLUS_3                           9                            38
  CLUS_4                           0                            65
  CLUS_5                           8                           100
  CLUS_6                           4                            62
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       57      8      5
  DEL PEAK 14(7P22.3) WILD-TYPE    166    142    152
D65V9, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          57                           166
  CLUS_2                           8                           142
  CLUS_3                           5                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED       23      0      2     45
  DEL PEAK 14(7P22.3) WILD-TYPE    196     58    135     71
D65V10, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          23                           196
  CLUS_2                           0                            58
  CLUS_3                           2                           135
  CLUS_4                          45                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       34     18      6
  DEL PEAK 14(7P22.3) WILD-TYPE    138     78    124
D65V11, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          34                           138
  CLUS_2                          18                            78
  CLUS_3                           6                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       33      4     21
  DEL PEAK 14(7P22.3) WILD-TYPE    111    111    118
D65V12, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          33                           111
  CLUS_2                           4                           111
  CLUS_3                          21                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 15(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED        0      2      0      0
  DEL PEAK 15(7Q11.22) WILD-TYPE     14     15     12     10
D66V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 15(7Q11.22) MUTATED"
clus
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 15(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q11.22) MUTATED        1      1      0      0      0
  DEL PEAK 15(7Q11.22) WILD-TYPE     13      8      7      7     16
D66V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 15(7Q11.22) MUTATED"
clus
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 15(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q11.22) MUTATED       39      0      0      1      1
  DEL PEAK 15(7Q11.22) WILD-TYPE    130    305     19      8     36
D66V3, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           39                            130
  CLUS_2                            0                            305
  CLUS_3                            0                             19
  CLUS_4                            1                              8
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       27      8      3
  DEL PEAK 15(7Q11.22) WILD-TYPE    138     81    168
D66V4, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           27                            138
  CLUS_2                            8                             81
  CLUS_3                            3                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(7Q11.22) MUTATED        5      3      0      0      0      2
  DEL PEAK 15(7Q11.22) WILD-TYPE     36     34     39     12     41     22
D66V5, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            3                             34
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED        7      1      0      2
  DEL PEAK 15(7Q11.22) WILD-TYPE     60     66     43     15
D66V6, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            1                             66
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       39      0      2
  DEL PEAK 15(7Q11.22) WILD-TYPE    195    153    148
D66V7, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           39                            195
  CLUS_2                            0                            153
  CLUS_3                            2                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(7Q11.22) MUTATED       27      0      4      0      7      3
  DEL PEAK 15(7Q11.22) WILD-TYPE     96     53     43     65    101     63
                                vv
clus                             CLUS_7
  DEL PEAK 15(7Q11.22) MUTATED        0
  DEL PEAK 15(7Q11.22) WILD-TYPE     75
D66V8, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           27                             96
  CLUS_2                            0                             53
  CLUS_3                            4                             43
  CLUS_4                            0                             65
  CLUS_5                            7                            101
  CLUS_6                            3                             63
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       33      4      3
  DEL PEAK 15(7Q11.22) WILD-TYPE    190    146    154
D66V9, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           33                            190
  CLUS_2                            4                            146
  CLUS_3                            3                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED       15      0      2     23
  DEL PEAK 15(7Q11.22) WILD-TYPE    204     58    135     93
D66V10, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           15                            204
  CLUS_2                            0                             58
  CLUS_3                            2                            135
  CLUS_4                           23                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       24      7      5
  DEL PEAK 15(7Q11.22) WILD-TYPE    148     89    125
D66V11, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           24                            148
  CLUS_2                            7                             89
  CLUS_3                            5                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       22      3     11
  DEL PEAK 15(7Q11.22) WILD-TYPE    122    112    128
D66V12, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           22                            122
  CLUS_2                            3                            112
  CLUS_3                           11                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 16(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED        0      3      0      0
  DEL PEAK 16(7Q31.1) WILD-TYPE     14     14     12     10
D67V1, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           3                            14
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(7Q31.1) MUTATED        1      2      0      0      0
  DEL PEAK 16(7Q31.1) WILD-TYPE     13      7      7      7     16
D67V2, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           2                             7
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(7Q31.1) MUTATED       54      0      0      1      0
  DEL PEAK 16(7Q31.1) WILD-TYPE    115    305     19      8     37
D67V3, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          54                           115
  CLUS_2                           0                           305
  CLUS_3                           0                            19
  CLUS_4                           1                             8
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       38     11      1
  DEL PEAK 16(7Q31.1) WILD-TYPE    127     78    170
D67V4, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          38                           127
  CLUS_2                          11                            78
  CLUS_3                           1                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(7Q31.1) MUTATED        4      5      1      0      0      3
  DEL PEAK 16(7Q31.1) WILD-TYPE     37     32     38     12     41     21
D67V5, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           5                            32
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED        9      2      0      2
  DEL PEAK 16(7Q31.1) WILD-TYPE     58     65     43     15
D67V6, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           2                            65
  CLUS_3                           0                            43
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       54      0      1
  DEL PEAK 16(7Q31.1) WILD-TYPE    180    153    149
D67V7, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          54                           180
  CLUS_2                           0                           153
  CLUS_3                           1                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(7Q31.1) MUTATED       44      0      4      0      5      2
  DEL PEAK 16(7Q31.1) WILD-TYPE     79     53     43     65    103     64
                               vv
clus                            CLUS_7
  DEL PEAK 16(7Q31.1) MUTATED        0
  DEL PEAK 16(7Q31.1) WILD-TYPE     75
D67V8, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          44                            79
  CLUS_2                           0                            53
  CLUS_3                           4                            43
  CLUS_4                           0                            65
  CLUS_5                           5                           103
  CLUS_6                           2                            64
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       48      3      3
  DEL PEAK 16(7Q31.1) WILD-TYPE    175    147    154
D67V9, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          48                           175
  CLUS_2                           3                           147
  CLUS_3                           3                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED       14      0      2     38
  DEL PEAK 16(7Q31.1) WILD-TYPE    205     58    135     78
D67V10, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          14                           205
  CLUS_2                           0                            58
  CLUS_3                           2                           135
  CLUS_4                          38                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       32     10      5
  DEL PEAK 16(7Q31.1) WILD-TYPE    140     86    125
D67V11, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          32                           140
  CLUS_2                          10                            86
  CLUS_3                           5                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       27      4     16
  DEL PEAK 16(7Q31.1) WILD-TYPE    117    111    123
D67V12, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          27                           117
  CLUS_2                           4                           111
  CLUS_3                          16                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 17(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED        1      4      1      0
  DEL PEAK 17(7Q36.1) WILD-TYPE     13     13     11     10
D68V1, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                            13
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q36.1) MUTATED        2      3      1      0      0
  DEL PEAK 17(7Q36.1) WILD-TYPE     12      6      6      7     16
D68V2, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           3                             6
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q36.1) MUTATED       60      1      0      1      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    109    304     19      8     36
D68V3, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          60                           109
  CLUS_2                           1                           304
  CLUS_3                           0                            19
  CLUS_4                           1                             8
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       41     12      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    124     77    170
D68V4, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          41                           124
  CLUS_2                          12                            77
  CLUS_3                           1                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q36.1) MUTATED        5      7      1      0      0      3
  DEL PEAK 17(7Q36.1) WILD-TYPE     36     30     38     12     41     21
D68V5, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           7                            30
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED       12      3      0      1
  DEL PEAK 17(7Q36.1) WILD-TYPE     55     64     43     16
D68V6, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           3                            64
  CLUS_3                           0                            43
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       62      0      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    172    153    149
D68V7, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          62                           172
  CLUS_2                           0                           153
  CLUS_3                           1                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q36.1) MUTATED       50      0      7      0      4      2
  DEL PEAK 17(7Q36.1) WILD-TYPE     73     53     40     65    104     64
                               vv
clus                            CLUS_7
  DEL PEAK 17(7Q36.1) MUTATED        0
  DEL PEAK 17(7Q36.1) WILD-TYPE     75
D68V8, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          50                            73
  CLUS_2                           0                            53
  CLUS_3                           7                            40
  CLUS_4                           0                            65
  CLUS_5                           4                           104
  CLUS_6                           2                            64
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       55      4      3
  DEL PEAK 17(7Q36.1) WILD-TYPE    168    146    154
D68V9, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          55                           168
  CLUS_2                           4                           146
  CLUS_3                           3                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED       15      0      2     45
  DEL PEAK 17(7Q36.1) WILD-TYPE    204     58    135     71
D68V10, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          15                           204
  CLUS_2                           0                            58
  CLUS_3                           2                           135
  CLUS_4                          45                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       34     11      5
  DEL PEAK 17(7Q36.1) WILD-TYPE    138     85    125
D68V11, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          34                           138
  CLUS_2                          11                            85
  CLUS_3                           5                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       31      3     16
  DEL PEAK 17(7Q36.1) WILD-TYPE    113    112    123
D68V12, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          31                           113
  CLUS_2                           3                           112
  CLUS_3                          16                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED        0      6      0      0
  DEL PEAK 18(8P23.2) WILD-TYPE     14     11     12     10
D69V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED        0      6      0      0      0
  DEL PEAK 18(8P23.2) WILD-TYPE     14      3      7      7     16
D69V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED      107      7      4      1      0
  DEL PEAK 18(8P23.2) WILD-TYPE     62    298     15      8     37
D69V3, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         107                            62
  CLUS_2                           7                           298
  CLUS_3                           4                            15
  CLUS_4                           1                             8
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       84     16      5
  DEL PEAK 18(8P23.2) WILD-TYPE     81     73    166
D69V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          84                            81
  CLUS_2                          16                            73
  CLUS_3                           5                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED        7      4      4      1      1      7
  DEL PEAK 18(8P23.2) WILD-TYPE     34     33     35     11     40     17
D69V5, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                           4                            33
  CLUS_3                           4                            35
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       12      5      2      5
  DEL PEAK 18(8P23.2) WILD-TYPE     55     62     41     12
D69V6, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           5                            62
  CLUS_3                           2                            41
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED      108      5      5
  DEL PEAK 18(8P23.2) WILD-TYPE    126    148    145
D69V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         108                           126
  CLUS_2                           5                           148
  CLUS_3                           5                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED       77      0     20      1     14      5
  DEL PEAK 18(8P23.2) WILD-TYPE     46     53     27     64     94     61
                               vv
clus                            CLUS_7
  DEL PEAK 18(8P23.2) MUTATED        1
  DEL PEAK 18(8P23.2) WILD-TYPE     74
D69V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          77                            46
  CLUS_2                           0                            53
  CLUS_3                          20                            27
  CLUS_4                           1                            64
  CLUS_5                          14                            94
  CLUS_6                           5                            61
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED      102      7      7
  DEL PEAK 18(8P23.2) WILD-TYPE    121    143    150
D69V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         102                           121
  CLUS_2                           7                           143
  CLUS_3                           7                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       36      1      5     74
  DEL PEAK 18(8P23.2) WILD-TYPE    183     57    132     42
D69V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          36                           183
  CLUS_2                           1                            57
  CLUS_3                           5                           132
  CLUS_4                          74                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       68     22      9
  DEL PEAK 18(8P23.2) WILD-TYPE    104     74    121
D69V11, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          68                           104
  CLUS_2                          22                            74
  CLUS_3                           9                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       61      4     34
  DEL PEAK 18(8P23.2) WILD-TYPE     83    111    105
D69V12, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          61                            83
  CLUS_2                           4                           111
  CLUS_3                          34                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 19(8P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED        0      6      0      0
  DEL PEAK 19(8P21.2) WILD-TYPE     14     11     12     10
D70V1, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P21.2) MUTATED        0      6      0      0      0
  DEL PEAK 19(8P21.2) WILD-TYPE     14      3      7      7     16
D70V2, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P21.2) MUTATED      109      4      3      1      0
  DEL PEAK 19(8P21.2) WILD-TYPE     60    301     16      8     37
D70V3, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                         109                            60
  CLUS_2                           4                           301
  CLUS_3                           3                            16
  CLUS_4                           1                             8
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       86     15      2
  DEL PEAK 19(8P21.2) WILD-TYPE     79     74    169
D70V4, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          86                            79
  CLUS_2                          15                            74
  CLUS_3                           2                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P21.2) MUTATED        7      5      3      0      1      7
  DEL PEAK 19(8P21.2) WILD-TYPE     34     32     36     12     40     17
D70V5, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                           5                            32
  CLUS_3                           3                            36
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED       13      4      1      5
  DEL PEAK 19(8P21.2) WILD-TYPE     54     63     42     12
D70V6, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          13                            54
  CLUS_2                           4                            63
  CLUS_3                           1                            42
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED      110      4      2
  DEL PEAK 19(8P21.2) WILD-TYPE    124    149    148
D70V7, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                         110                           124
  CLUS_2                           4                           149
  CLUS_3                           2                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P21.2) MUTATED       80      0     20      1     12      3
  DEL PEAK 19(8P21.2) WILD-TYPE     43     53     27     64     96     63
                               vv
clus                            CLUS_7
  DEL PEAK 19(8P21.2) MUTATED        0
  DEL PEAK 19(8P21.2) WILD-TYPE     75
D70V8, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          80                            43
  CLUS_2                           0                            53
  CLUS_3                          20                            27
  CLUS_4                           1                            64
  CLUS_5                          12                            96
  CLUS_6                           3                            63
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED      104      7      3
  DEL PEAK 19(8P21.2) WILD-TYPE    119    143    154
D70V9, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                         104                           119
  CLUS_2                           7                           143
  CLUS_3                           3                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED       32      1      2     79
  DEL PEAK 19(8P21.2) WILD-TYPE    187     57    135     37
D70V10, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          32                           187
  CLUS_2                           1                            57
  CLUS_3                           2                           135
  CLUS_4                          79                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       68     23      7
  DEL PEAK 19(8P21.2) WILD-TYPE    104     73    123
D70V11, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          68                           104
  CLUS_2                          23                            73
  CLUS_3                           7                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       62      2     34
  DEL PEAK 19(8P21.2) WILD-TYPE     82    113    105
D70V12, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          62                            82
  CLUS_2                           2                           113
  CLUS_3                          34                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 20(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED        1      3      0      0
  DEL PEAK 20(9P23) WILD-TYPE     13     14     12     10
D71V1, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                          14
  CLUS_3                         0                          12
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9P23) MUTATED        1      3      0      0      0
  DEL PEAK 20(9P23) WILD-TYPE     13      6      7      7     16
D71V2, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                           6
  CLUS_3                         0                           7
  CLUS_4                         0                           7
  CLUS_5                         0                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9P23) MUTATED       67      2      5      1      4
  DEL PEAK 20(9P23) WILD-TYPE    102    303     14      8     33
D71V3, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        67                         102
  CLUS_2                         2                         303
  CLUS_3                         5                          14
  CLUS_4                         1                           8
  CLUS_5                         4                          33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       44     18      8
  DEL PEAK 20(9P23) WILD-TYPE    121     71    163
D71V4, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        44                         121
  CLUS_2                        18                          71
  CLUS_3                         8                         163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(9P23) MUTATED        4      5      1      1      0      5
  DEL PEAK 20(9P23) WILD-TYPE     37     32     38     11     41     19
D71V5, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         4                          37
  CLUS_2                         5                          32
  CLUS_3                         1                          38
  CLUS_4                         1                          11
  CLUS_5                         0                          41
  CLUS_6                         5                          19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED        6      5      2      3
  DEL PEAK 20(9P23) WILD-TYPE     61     62     41     14
D71V6, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         6                          61
  CLUS_2                         5                          62
  CLUS_3                         2                          41
  CLUS_4                         3                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       63      5     11
  DEL PEAK 20(9P23) WILD-TYPE    171    148    139
D71V7, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        63                         171
  CLUS_2                         5                         148
  CLUS_3                        11                         139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 20(9P23) MUTATED       41      0     14      2     12      9      1
  DEL PEAK 20(9P23) WILD-TYPE     82     53     33     63     96     57     74
D71V8, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        41                          82
  CLUS_2                         0                          53
  CLUS_3                        14                          33
  CLUS_4                         2                          63
  CLUS_5                        12                          96
  CLUS_6                         9                          57
  CLUS_7                         1                          74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       56      8     14
  DEL PEAK 20(9P23) WILD-TYPE    167    142    143
D71V9, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        56                         167
  CLUS_2                         8                         142
  CLUS_3                        14                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED       25      0     10     43
  DEL PEAK 20(9P23) WILD-TYPE    194     58    127     73
D71V10, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        25                         194
  CLUS_2                         0                          58
  CLUS_3                        10                         127
  CLUS_4                        43                          73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       37     18     13
  DEL PEAK 20(9P23) WILD-TYPE    135     78    117
D71V11, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        37                         135
  CLUS_2                        18                          78
  CLUS_3                        13                         117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       35     11     22
  DEL PEAK 20(9P23) WILD-TYPE    109    104    117
D71V12, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        35                         109
  CLUS_2                        11                         104
  CLUS_3                        22                         117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 21(9Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED        0      9      0      0
  DEL PEAK 21(9Q21.2) WILD-TYPE     14      8     12     10
D72V1, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           9                             8
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9Q21.2) MUTATED        2      7      0      0      0
  DEL PEAK 21(9Q21.2) WILD-TYPE     12      2      7      7     16
D72V2, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9Q21.2) MUTATED      112      3      7      2      5
  DEL PEAK 21(9Q21.2) WILD-TYPE     57    302     12      7     32
D72V3, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                         112                            57
  CLUS_2                           3                           302
  CLUS_3                           7                            12
  CLUS_4                           2                             7
  CLUS_5                           5                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       78     20     15
  DEL PEAK 21(9Q21.2) WILD-TYPE     87     69    156
D72V4, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          78                            87
  CLUS_2                          20                            69
  CLUS_3                          15                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9Q21.2) MUTATED        6     12      1      2      1      6
  DEL PEAK 21(9Q21.2) WILD-TYPE     35     25     38     10     40     18
D72V5, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                          12                            25
  CLUS_3                           1                            38
  CLUS_4                           2                            10
  CLUS_5                           1                            40
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED       12      8      5      3
  DEL PEAK 21(9Q21.2) WILD-TYPE     55     59     38     14
D72V6, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           8                            59
  CLUS_3                           5                            38
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED      105      8     16
  DEL PEAK 21(9Q21.2) WILD-TYPE    129    145    134
D72V7, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                         105                           129
  CLUS_2                           8                           145
  CLUS_3                          16                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9Q21.2) MUTATED       77      0     16      3     19     13
  DEL PEAK 21(9Q21.2) WILD-TYPE     46     53     31     62     89     53
                               vv
clus                            CLUS_7
  DEL PEAK 21(9Q21.2) MUTATED        1
  DEL PEAK 21(9Q21.2) WILD-TYPE     74
D72V8, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          77                            46
  CLUS_2                           0                            53
  CLUS_3                          16                            31
  CLUS_4                           3                            62
  CLUS_5                          19                            89
  CLUS_6                          13                            53
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       93     16     17
  DEL PEAK 21(9Q21.2) WILD-TYPE    130    134    140
D72V9, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          93                           130
  CLUS_2                          16                           134
  CLUS_3                          17                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED       47      1     13     65
  DEL PEAK 21(9Q21.2) WILD-TYPE    172     57    124     51
D72V10, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          47                           172
  CLUS_2                           1                            57
  CLUS_3                          13                           124
  CLUS_4                          65                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       61     29     20
  DEL PEAK 21(9Q21.2) WILD-TYPE    111     67    110
D72V11, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          61                           111
  CLUS_2                          29                            67
  CLUS_3                          20                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       61     16     33
  DEL PEAK 21(9Q21.2) WILD-TYPE     83     99    106
D72V12, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          61                            83
  CLUS_2                          16                            99
  CLUS_3                          33                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 22(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED        0      9      0      0
  DEL PEAK 22(9Q34.2) WILD-TYPE     14      8     12     10
D73V1, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           9                             8
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9Q34.2) MUTATED        2      7      0      0      0
  DEL PEAK 22(9Q34.2) WILD-TYPE     12      2      7      7     16
D73V2, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9Q34.2) MUTATED      117      4      6      1      4
  DEL PEAK 22(9Q34.2) WILD-TYPE     52    301     13      8     33
D73V3, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                         117                            52
  CLUS_2                           4                           301
  CLUS_3                           6                            13
  CLUS_4                           1                             8
  CLUS_5                           4                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       78     23     13
  DEL PEAK 22(9Q34.2) WILD-TYPE     87     66    158
D73V4, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          78                            87
  CLUS_2                          23                            66
  CLUS_3                          13                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9Q34.2) MUTATED        7     13      2      2      1      6
  DEL PEAK 22(9Q34.2) WILD-TYPE     34     24     37     10     40     18
D73V5, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                          13                            24
  CLUS_3                           2                            37
  CLUS_4                           2                            10
  CLUS_5                           1                            40
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED       15      8      5      3
  DEL PEAK 22(9Q34.2) WILD-TYPE     52     59     38     14
D73V6, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          15                            52
  CLUS_2                           8                            59
  CLUS_3                           5                            38
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED      106      8     17
  DEL PEAK 22(9Q34.2) WILD-TYPE    128    145    133
D73V7, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                         106                           128
  CLUS_2                           8                           145
  CLUS_3                          17                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9Q34.2) MUTATED       75      0     16      3     22     14
  DEL PEAK 22(9Q34.2) WILD-TYPE     48     53     31     62     86     52
                               vv
clus                            CLUS_7
  DEL PEAK 22(9Q34.2) MUTATED        1
  DEL PEAK 22(9Q34.2) WILD-TYPE     74
D73V8, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          75                            48
  CLUS_2                           0                            53
  CLUS_3                          16                            31
  CLUS_4                           3                            62
  CLUS_5                          22                            86
  CLUS_6                          14                            52
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       96     15     18
  DEL PEAK 22(9Q34.2) WILD-TYPE    127    135    139
D73V9, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          96                           127
  CLUS_2                          15                           135
  CLUS_3                          18                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED       48      1     13     67
  DEL PEAK 22(9Q34.2) WILD-TYPE    171     57    124     49
D73V10, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          48                           171
  CLUS_2                           1                            57
  CLUS_3                          13                           124
  CLUS_4                          67                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       64     27     20
  DEL PEAK 22(9Q34.2) WILD-TYPE    108     69    110
D73V11, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          64                           108
  CLUS_2                          27                            69
  CLUS_3                          20                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       65     17     29
  DEL PEAK 22(9Q34.2) WILD-TYPE     79     98    110
D73V12, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          65                            79
  CLUS_2                          17                            98
  CLUS_3                          29                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 23(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED        0      3      0      0
  DEL PEAK 23(10Q23.31) WILD-TYPE     14     14     12     10
D74V1, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             3                              14
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q23.31) MUTATED        1      2      0      0      0
  DEL PEAK 23(10Q23.31) WILD-TYPE     13      7      7      7     16
D74V2, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             2                               7
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q23.31) MUTATED       70      5      2      0      0
  DEL PEAK 23(10Q23.31) WILD-TYPE     99    300     17      9     37
D74V3, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            70                              99
  CLUS_2                             5                             300
  CLUS_3                             2                              17
  CLUS_4                             0                               9
  CLUS_5                             0                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       49     13      6
  DEL PEAK 23(10Q23.31) WILD-TYPE    116     76    165
D74V4, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            49                             116
  CLUS_2                            13                              76
  CLUS_3                             6                             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q23.31) MUTATED        4      7      3      1      0      2
  DEL PEAK 23(10Q23.31) WILD-TYPE     37     30     36     11     41     22
D74V5, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                             7                              30
  CLUS_3                             3                              36
  CLUS_4                             1                              11
  CLUS_5                             0                              41
  CLUS_6                             2                              22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED        6      6      4      1
  DEL PEAK 23(10Q23.31) WILD-TYPE     61     61     39     16
D74V6, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             6                              61
  CLUS_2                             6                              61
  CLUS_3                             4                              39
  CLUS_4                             1                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       64      4      8
  DEL PEAK 23(10Q23.31) WILD-TYPE    170    149    142
D74V7, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            64                             170
  CLUS_2                             4                             149
  CLUS_3                             8                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q23.31) MUTATED       47      0      7      3     12      5
  DEL PEAK 23(10Q23.31) WILD-TYPE     76     53     40     62     96     61
                                 vv
clus                              CLUS_7
  DEL PEAK 23(10Q23.31) MUTATED        2
  DEL PEAK 23(10Q23.31) WILD-TYPE     73
D74V8, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            47                              76
  CLUS_2                             0                              53
  CLUS_3                             7                              40
  CLUS_4                             3                              62
  CLUS_5                            12                              96
  CLUS_6                             5                              61
  CLUS_7                             2                              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       61      7      8
  DEL PEAK 23(10Q23.31) WILD-TYPE    162    143    149
D74V9, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            61                             162
  CLUS_2                             7                             143
  CLUS_3                             8                             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED       30      0      7     39
  DEL PEAK 23(10Q23.31) WILD-TYPE    189     58    130     77
D74V10, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            30                             189
  CLUS_2                             0                              58
  CLUS_3                             7                             130
  CLUS_4                            39                              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       43     12     12
  DEL PEAK 23(10Q23.31) WILD-TYPE    129     84    118
D74V11, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            43                             129
  CLUS_2                            12                              84
  CLUS_3                            12                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       41      7     19
  DEL PEAK 23(10Q23.31) WILD-TYPE    103    108    120
D74V12, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            41                             103
  CLUS_2                             7                             108
  CLUS_3                            19                             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 24(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11P15.5) MUTATED        1      3      0      0
  DEL PEAK 24(11P15.5) WILD-TYPE     13     14     12     10
D75V1, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11P15.5) MUTATED        2      2      0      0      0
  DEL PEAK 24(11P15.5) WILD-TYPE     12      7      7      7     16
D75V2, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11P15.5) MUTATED       94      1      6      4      1
  DEL PEAK 24(11P15.5) WILD-TYPE     75    304     13      5     36
D75V3, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           94                             75
  CLUS_2                            1                            304
  CLUS_3                            6                             13
  CLUS_4                            4                              5
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       74     17      6
  DEL PEAK 24(11P15.5) WILD-TYPE     91     72    165
D75V4, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           74                             91
  CLUS_2                           17                             72
  CLUS_3                            6                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11P15.5) MUTATED        4      6      2      0      2      4
  DEL PEAK 24(11P15.5) WILD-TYPE     37     31     37     12     39     20
D75V5, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            6                             31
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11P15.5) MUTATED        9      2      4      3
  DEL PEAK 24(11P15.5) WILD-TYPE     58     65     39     14
D75V6, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            2                             65
  CLUS_3                            4                             39
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       90      3     12
  DEL PEAK 24(11P15.5) WILD-TYPE    144    150    138
D75V7, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           90                            144
  CLUS_2                            3                            150
  CLUS_3                           12                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11P15.5) MUTATED       61      1     18      0     14      9
  DEL PEAK 24(11P15.5) WILD-TYPE     62     52     29     65     94     57
                                vv
clus                             CLUS_7
  DEL PEAK 24(11P15.5) MUTATED        2
  DEL PEAK 24(11P15.5) WILD-TYPE     73
D75V8, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           61                             62
  CLUS_2                            1                             52
  CLUS_3                           18                             29
  CLUS_4                            0                             65
  CLUS_5                           14                             94
  CLUS_6                            9                             57
  CLUS_7                            2                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       83      9     13
  DEL PEAK 24(11P15.5) WILD-TYPE    140    141    144
D75V9, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           83                            140
  CLUS_2                            9                            141
  CLUS_3                           13                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11P15.5) MUTATED       33      1     11     60
  DEL PEAK 24(11P15.5) WILD-TYPE    186     57    126     56
D75V10, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           33                            186
  CLUS_2                            1                             57
  CLUS_3                           11                            126
  CLUS_4                           60                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       66     18     13
  DEL PEAK 24(11P15.5) WILD-TYPE    106     78    117
D75V11, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           66                            106
  CLUS_2                           18                             78
  CLUS_3                           13                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       62     12     23
  DEL PEAK 24(11P15.5) WILD-TYPE     82    103    116
D75V12, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           62                             82
  CLUS_2                           12                            103
  CLUS_3                           23                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 25(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11Q14.1) MUTATED        0      1      0      0
  DEL PEAK 25(11Q14.1) WILD-TYPE     14     16     12     10
D76V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 25(11Q14.1) MUTATED"
clus
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q14.1) MUTATED        1      0      0      0      0
  DEL PEAK 25(11Q14.1) WILD-TYPE     13      9      7      7     16
D76V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 25(11Q14.1) MUTATED"
clus
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q14.1) MUTATED       61      0      4      4      1
  DEL PEAK 25(11Q14.1) WILD-TYPE    108    305     15      5     36
D76V3, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           61                            108
  CLUS_2                            0                            305
  CLUS_3                            4                             15
  CLUS_4                            4                              5
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       51     10      5
  DEL PEAK 25(11Q14.1) WILD-TYPE    114     79    166
D76V4, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           51                            114
  CLUS_2                           10                             79
  CLUS_3                            5                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q14.1) MUTATED        3      4      2      0      1      3
  DEL PEAK 25(11Q14.1) WILD-TYPE     38     33     37     12     40     21
D76V5, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            4                             33
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11Q14.1) MUTATED        7      3      2      1
  DEL PEAK 25(11Q14.1) WILD-TYPE     60     64     41     16
D76V6, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       60      2      7
  DEL PEAK 25(11Q14.1) WILD-TYPE    174    151    143
D76V7, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           60                            174
  CLUS_2                            2                            151
  CLUS_3                            7                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q14.1) MUTATED       43      1     12      1      8      4
  DEL PEAK 25(11Q14.1) WILD-TYPE     80     52     35     64    100     62
                                vv
clus                             CLUS_7
  DEL PEAK 25(11Q14.1) MUTATED        0
  DEL PEAK 25(11Q14.1) WILD-TYPE     75
D76V8, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           43                             80
  CLUS_2                            1                             52
  CLUS_3                           12                             35
  CLUS_4                            1                             64
  CLUS_5                            8                            100
  CLUS_6                            4                             62
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       55      7      8
  DEL PEAK 25(11Q14.1) WILD-TYPE    168    143    149
D76V9, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           55                            168
  CLUS_2                            7                            143
  CLUS_3                            8                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11Q14.1) MUTATED       22      0      6     42
  DEL PEAK 25(11Q14.1) WILD-TYPE    197     58    131     74
D76V10, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           22                            197
  CLUS_2                            0                             58
  CLUS_3                            6                            131
  CLUS_4                           42                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       46     12      7
  DEL PEAK 25(11Q14.1) WILD-TYPE    126     84    123
D76V11, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           46                            126
  CLUS_2                           12                             84
  CLUS_3                            7                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       42      6     17
  DEL PEAK 25(11Q14.1) WILD-TYPE    102    109    122
D76V12, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           42                            102
  CLUS_2                            6                            109
  CLUS_3                           17                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 26(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q25) MUTATED        0      2      0      0
  DEL PEAK 26(11Q25) WILD-TYPE     14     15     12     10
D77V1, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 26(11Q25) MUTATED"
clus
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 26(11Q25) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(11Q25) MUTATED        0      2      0      0      0
  DEL PEAK 26(11Q25) WILD-TYPE     14      7      7      7     16
D77V2, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 26(11Q25) MUTATED"
clus
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 26(11Q25) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(11Q25) MUTATED       77      3      6      4      3
  DEL PEAK 26(11Q25) WILD-TYPE     92    302     13      5     34
D77V3, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         77                           92
  CLUS_2                          3                          302
  CLUS_3                          6                           13
  CLUS_4                          4                            5
  CLUS_5                          3                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       66     11      7
  DEL PEAK 26(11Q25) WILD-TYPE     99     78    164
D77V4, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         66                           99
  CLUS_2                         11                           78
  CLUS_3                          7                          164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(11Q25) MUTATED        2      7      4      1      1      4
  DEL PEAK 26(11Q25) WILD-TYPE     39     30     35     11     40     20
D77V5, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          2                           39
  CLUS_2                          7                           30
  CLUS_3                          4                           35
  CLUS_4                          1                           11
  CLUS_5                          1                           40
  CLUS_6                          4                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q25) MUTATED        7      7      4      1
  DEL PEAK 26(11Q25) WILD-TYPE     60     60     39     16
D77V6, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          7                           60
  CLUS_2                          7                           60
  CLUS_3                          4                           39
  CLUS_4                          1                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       76      6     10
  DEL PEAK 26(11Q25) WILD-TYPE    158    147    140
D77V7, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         76                          158
  CLUS_2                          6                          147
  CLUS_3                         10                          140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 26(11Q25) MUTATED       52      1     14      2     16      6      1
  DEL PEAK 26(11Q25) WILD-TYPE     71     52     33     63     92     60     74
D77V8, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         52                           71
  CLUS_2                          1                           52
  CLUS_3                         14                           33
  CLUS_4                          2                           63
  CLUS_5                         16                           92
  CLUS_6                          6                           60
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       67     12     12
  DEL PEAK 26(11Q25) WILD-TYPE    156    138    145
D77V9, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         67                          156
  CLUS_2                         12                          138
  CLUS_3                         12                          145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q25) MUTATED       37      0      7     47
  DEL PEAK 26(11Q25) WILD-TYPE    182     58    130     69
D77V10, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         37                          182
  CLUS_2                          0                           58
  CLUS_3                          7                          130
  CLUS_4                         47                           69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       53     18     11
  DEL PEAK 26(11Q25) WILD-TYPE    119     78    119
D77V11, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         53                          119
  CLUS_2                         18                           78
  CLUS_3                         11                          119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       49      8     25
  DEL PEAK 26(11Q25) WILD-TYPE     95    107    114
D77V12, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         49                           95
  CLUS_2                          8                          107
  CLUS_3                         25                          114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DEL PEAK 27(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q23.1) MUTATED        0      2      0      0
  DEL PEAK 27(12Q23.1) WILD-TYPE     14     15     12     10
D78V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 27(12Q23.1) MUTATED"
clus
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 27(12Q23.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED        0      2      0      0      0
  DEL PEAK 27(12Q23.1) WILD-TYPE     14      7      7      7     16
D78V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 27(12Q23.1) MUTATED"
clus
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 27(12Q23.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED       54      0      1      0      1
  DEL PEAK 27(12Q23.1) WILD-TYPE    115    305     18      9     36
D78V3, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           54                            115
  CLUS_2                            0                            305
  CLUS_3                            1                             18
  CLUS_4                            0                              9
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       42      6      0
  DEL PEAK 27(12Q23.1) WILD-TYPE    123     83    171
D78V4, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           42                            123
  CLUS_2                            6                             83
  CLUS_3                            0                            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED        3      7      2      0      0      2
  DEL PEAK 27(12Q23.1) WILD-TYPE     38     30     37     12     41     22
D78V5, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            7                             30
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q23.1) MUTATED        9      3      0      2
  DEL PEAK 27(12Q23.1) WILD-TYPE     58     64     43     15
D78V6, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            3                             64
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       51      1      4
  DEL PEAK 27(12Q23.1) WILD-TYPE    183    152    146
D78V7, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           51                            183
  CLUS_2                            1                            152
  CLUS_3                            4                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       39      0      9      0      3      5
  DEL PEAK 27(12Q23.1) WILD-TYPE     84     53     38     65    105     61
                                vv
clus                             CLUS_7
  DEL PEAK 27(12Q23.1) MUTATED        0
  DEL PEAK 27(12Q23.1) WILD-TYPE     75
D78V8, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           39                             84
  CLUS_2                            0                             53
  CLUS_3                            9                             38
  CLUS_4                            0                             65
  CLUS_5                            3                            105
  CLUS_6                            5                             61
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       46      6      2
  DEL PEAK 27(12Q23.1) WILD-TYPE    177    144    155
D78V9, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           46                            177
  CLUS_2                            6                            144
  CLUS_3                            2                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q23.1) MUTATED       19      0      0     35
  DEL PEAK 27(12Q23.1) WILD-TYPE    200     58    137     81
D78V10, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           19                            200
  CLUS_2                            0                             58
  CLUS_3                            0                            137
  CLUS_4                           35                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       32     11      4
  DEL PEAK 27(12Q23.1) WILD-TYPE    140     85    126
D78V11, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           32                            140
  CLUS_2                           11                             85
  CLUS_3                            4                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       30      2     15
  DEL PEAK 27(12Q23.1) WILD-TYPE    114    113    124
D78V12, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           30                            114
  CLUS_2                            2                            113
  CLUS_3                           15                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = DEL PEAK 28(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q24.33) MUTATED        0      2      0      0
  DEL PEAK 28(12Q24.33) WILD-TYPE     14     15     12     10
D79V1, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 28(12Q24.33) MUTATED"
clus
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 28(12Q24.33) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.33) MUTATED        0      2      0      0      0
  DEL PEAK 28(12Q24.33) WILD-TYPE     14      7      7      7     16
D79V2, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 28(12Q24.33) MUTATED"
clus
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 28(12Q24.33) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.33) MUTATED       63      1      1      0      1
  DEL PEAK 28(12Q24.33) WILD-TYPE    106    304     18      9     36
D79V3, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            63                             106
  CLUS_2                             1                             304
  CLUS_3                             1                              18
  CLUS_4                             0                               9
  CLUS_5                             1                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       50      8      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    115     81    168
D79V4, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            50                             115
  CLUS_2                             8                              81
  CLUS_3                             3                             168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.33) MUTATED        2      6      1      0      0      2
  DEL PEAK 28(12Q24.33) WILD-TYPE     39     31     38     12     41     22
D79V5, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             2                              39
  CLUS_2                             6                              31
  CLUS_3                             1                              38
  CLUS_4                             0                              12
  CLUS_5                             0                              41
  CLUS_6                             2                              22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q24.33) MUTATED        7      2      0      2
  DEL PEAK 28(12Q24.33) WILD-TYPE     60     65     43     15
D79V6, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             7                              60
  CLUS_2                             2                              65
  CLUS_3                             0                              43
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       62      1      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    172    152    147
D79V7, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            62                             172
  CLUS_2                             1                             152
  CLUS_3                             3                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.33) MUTATED       45      0      8      0      9      4
  DEL PEAK 28(12Q24.33) WILD-TYPE     78     53     39     65     99     62
                                 vv
clus                              CLUS_7
  DEL PEAK 28(12Q24.33) MUTATED        0
  DEL PEAK 28(12Q24.33) WILD-TYPE     75
D79V8, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            45                              78
  CLUS_2                             0                              53
  CLUS_3                             8                              39
  CLUS_4                             0                              65
  CLUS_5                             9                              99
  CLUS_6                             4                              62
  CLUS_7                             0                              75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       55      6      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    168    144    154
D79V9, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            55                             168
  CLUS_2                             6                             144
  CLUS_3                             3                             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q24.33) MUTATED       23      0      2     39
  DEL PEAK 28(12Q24.33) WILD-TYPE    196     58    135     77
D79V10, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            23                             196
  CLUS_2                             0                              58
  CLUS_3                             2                             135
  CLUS_4                            39                              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       40     12      7
  DEL PEAK 28(12Q24.33) WILD-TYPE    132     84    123
D79V11, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            40                             132
  CLUS_2                            12                              84
  CLUS_3                             7                             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       37      4     18
  DEL PEAK 28(12Q24.33) WILD-TYPE    107    111    121
D79V12, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            37                             107
  CLUS_2                             4                             111
  CLUS_3                            18                             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = DEL PEAK 29(13Q11) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q11) MUTATED        1      4      1      0
  DEL PEAK 29(13Q11) WILD-TYPE     13     13     11     10
D80V1, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          4                           13
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q11) MUTATED        3      3      0      0      0
  DEL PEAK 29(13Q11) WILD-TYPE     11      6      7      7     16
D80V2, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          3                           11
  CLUS_2                          3                            6
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q11) MUTATED       80      3      6      3      6
  DEL PEAK 29(13Q11) WILD-TYPE     89    302     13      6     31
D80V3, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         80                           89
  CLUS_2                          3                          302
  CLUS_3                          6                           13
  CLUS_4                          3                            6
  CLUS_5                          6                           31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       57     17     10
  DEL PEAK 29(13Q11) WILD-TYPE    108     72    161
D80V4, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         57                          108
  CLUS_2                         17                           72
  CLUS_3                         10                          161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q11) MUTATED        4      7      1      0      3      3
  DEL PEAK 29(13Q11) WILD-TYPE     37     30     38     12     38     21
D80V5, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          4                           37
  CLUS_2                          7                           30
  CLUS_3                          1                           38
  CLUS_4                          0                           12
  CLUS_5                          3                           38
  CLUS_6                          3                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q11) MUTATED        8      5      4      1
  DEL PEAK 29(13Q11) WILD-TYPE     59     62     39     16
D80V6, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          8                           59
  CLUS_2                          5                           62
  CLUS_3                          4                           39
  CLUS_4                          1                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       76      6     16
  DEL PEAK 29(13Q11) WILD-TYPE    158    147    134
D80V7, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         76                          158
  CLUS_2                          6                          147
  CLUS_3                         16                          134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 29(13Q11) MUTATED       52      1     11      0     21     12      1
  DEL PEAK 29(13Q11) WILD-TYPE     71     52     36     65     87     54     74
D80V8, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         52                           71
  CLUS_2                          1                           52
  CLUS_3                         11                           36
  CLUS_4                          0                           65
  CLUS_5                         21                           87
  CLUS_6                         12                           54
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       71     13     13
  DEL PEAK 29(13Q11) WILD-TYPE    152    137    144
D80V9, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         71                          152
  CLUS_2                         13                          137
  CLUS_3                         13                          144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q11) MUTATED       41      1     10     45
  DEL PEAK 29(13Q11) WILD-TYPE    178     57    127     71
D80V10, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         41                          178
  CLUS_2                          1                           57
  CLUS_3                         10                          127
  CLUS_4                         45                           71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       42     24     17
  DEL PEAK 29(13Q11) WILD-TYPE    130     72    113
D80V11, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         42                          130
  CLUS_2                         24                           72
  CLUS_3                         17                          113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       38     13     32
  DEL PEAK 29(13Q11) WILD-TYPE    106    102    107
D80V12, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         38                          106
  CLUS_2                         13                          102
  CLUS_3                         32                          107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = DEL PEAK 30(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED        1      3      1      0
  DEL PEAK 30(13Q14.2) WILD-TYPE     13     14     11     10
D81V1, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q14.2) MUTATED        4      1      0      0      0
  DEL PEAK 30(13Q14.2) WILD-TYPE     10      8      7      7     16
D81V2, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            1                              8
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q14.2) MUTATED       86      5      8      3      5
  DEL PEAK 30(13Q14.2) WILD-TYPE     83    300     11      6     32
D81V3, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           86                             83
  CLUS_2                            5                            300
  CLUS_3                            8                             11
  CLUS_4                            3                              6
  CLUS_5                            5                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       60     20     14
  DEL PEAK 30(13Q14.2) WILD-TYPE    105     69    157
D81V4, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           60                            105
  CLUS_2                           20                             69
  CLUS_3                           14                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(13Q14.2) MUTATED        5      9      1      1      3      3
  DEL PEAK 30(13Q14.2) WILD-TYPE     36     28     38     11     38     21
D81V5, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            9                             28
  CLUS_3                            1                             38
  CLUS_4                            1                             11
  CLUS_5                            3                             38
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED       10      6      5      1
  DEL PEAK 30(13Q14.2) WILD-TYPE     57     61     38     16
D81V6, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            6                             61
  CLUS_3                            5                             38
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       80      8     19
  DEL PEAK 30(13Q14.2) WILD-TYPE    154    145    131
D81V7, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           80                            154
  CLUS_2                            8                            145
  CLUS_3                           19                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(13Q14.2) MUTATED       48      3     15      0     25     14
  DEL PEAK 30(13Q14.2) WILD-TYPE     75     50     32     65     83     52
                                vv
clus                             CLUS_7
  DEL PEAK 30(13Q14.2) MUTATED        2
  DEL PEAK 30(13Q14.2) WILD-TYPE     73
D81V8, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           48                             75
  CLUS_2                            3                             50
  CLUS_3                           15                             32
  CLUS_4                            0                             65
  CLUS_5                           25                             83
  CLUS_6                           14                             52
  CLUS_7                            2                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       71     18     17
  DEL PEAK 30(13Q14.2) WILD-TYPE    152    132    140
D81V9, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           71                            152
  CLUS_2                           18                            132
  CLUS_3                           17                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED       48      2     13     43
  DEL PEAK 30(13Q14.2) WILD-TYPE    171     56    124     73
D81V10, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           48                            171
  CLUS_2                            2                             56
  CLUS_3                           13                            124
  CLUS_4                           43                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       49     25     20
  DEL PEAK 30(13Q14.2) WILD-TYPE    123     71    110
D81V11, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           49                            123
  CLUS_2                           25                             71
  CLUS_3                           20                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       47     17     30
  DEL PEAK 30(13Q14.2) WILD-TYPE     97     98    109
D81V12, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           47                             97
  CLUS_2                           17                             98
  CLUS_3                           30                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = DEL PEAK 31(14Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q13.1) MUTATED        0      5      0      0
  DEL PEAK 31(14Q13.1) WILD-TYPE     14     12     12     10
D82V1, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(14Q13.1) MUTATED        1      4      0      0      0
  DEL PEAK 31(14Q13.1) WILD-TYPE     13      5      7      7     16
D82V2, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(14Q13.1) MUTATED       63      2      2      3      3
  DEL PEAK 31(14Q13.1) WILD-TYPE    106    303     17      6     34
D82V3, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           63                            106
  CLUS_2                            2                            303
  CLUS_3                            2                             17
  CLUS_4                            3                              6
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       51      8      5
  DEL PEAK 31(14Q13.1) WILD-TYPE    114     81    166
D82V4, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           51                            114
  CLUS_2                            8                             81
  CLUS_3                            5                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q13.1) MUTATED        2      5      0      0      1      3
  DEL PEAK 31(14Q13.1) WILD-TYPE     39     32     39     12     40     21
D82V5, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            5                             32
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q13.1) MUTATED        4      3      1      3
  DEL PEAK 31(14Q13.1) WILD-TYPE     63     64     42     14
D82V6, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            4                             63
  CLUS_2                            3                             64
  CLUS_3                            1                             42
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       62      4      6
  DEL PEAK 31(14Q13.1) WILD-TYPE    172    149    144
D82V7, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           62                            172
  CLUS_2                            4                            149
  CLUS_3                            6                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q13.1) MUTATED       50      1      5      1      9      5
  DEL PEAK 31(14Q13.1) WILD-TYPE     73     52     42     64     99     61
                                vv
clus                             CLUS_7
  DEL PEAK 31(14Q13.1) MUTATED        1
  DEL PEAK 31(14Q13.1) WILD-TYPE     74
D82V8, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           50                             73
  CLUS_2                            1                             52
  CLUS_3                            5                             42
  CLUS_4                            1                             64
  CLUS_5                            9                             99
  CLUS_6                            5                             61
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       58     10      4
  DEL PEAK 31(14Q13.1) WILD-TYPE    165    140    153
D82V9, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           58                            165
  CLUS_2                           10                            140
  CLUS_3                            4                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q13.1) MUTATED       27      0      4     41
  DEL PEAK 31(14Q13.1) WILD-TYPE    192     58    133     75
D82V10, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           27                            192
  CLUS_2                            0                             58
  CLUS_3                            4                            133
  CLUS_4                           41                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       37     18      9
  DEL PEAK 31(14Q13.1) WILD-TYPE    135     78    121
D82V11, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           37                            135
  CLUS_2                           18                             78
  CLUS_3                            9                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       38      5     21
  DEL PEAK 31(14Q13.1) WILD-TYPE    106    110    118
D82V12, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           38                            106
  CLUS_2                            5                            110
  CLUS_3                           21                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = DEL PEAK 32(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.1) MUTATED        1      5      0      0
  DEL PEAK 32(15Q15.1) WILD-TYPE     13     12     12     10
D83V1, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q15.1) MUTATED        1      4      0      1      0
  DEL PEAK 32(15Q15.1) WILD-TYPE     13      5      7      6     16
D83V2, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            1                              6
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q15.1) MUTATED      119      5      8      5      3
  DEL PEAK 32(15Q15.1) WILD-TYPE     50    300     11      4     34
D83V3, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                          119                             50
  CLUS_2                            5                            300
  CLUS_3                            8                             11
  CLUS_4                            5                              4
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       90     23     12
  DEL PEAK 32(15Q15.1) WILD-TYPE     75     66    159
D83V4, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           90                             75
  CLUS_2                           23                             66
  CLUS_3                           12                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q15.1) MUTATED        4     12      2      2      2      6
  DEL PEAK 32(15Q15.1) WILD-TYPE     37     25     37     10     39     18
D83V5, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                           12                             25
  CLUS_3                            2                             37
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.1) MUTATED       12      6      6      4
  DEL PEAK 32(15Q15.1) WILD-TYPE     55     61     37     13
D83V6, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                            6                             61
  CLUS_3                            6                             37
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED      119      9     12
  DEL PEAK 32(15Q15.1) WILD-TYPE    115    144    138
D83V7, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                          119                            115
  CLUS_2                            9                            144
  CLUS_3                           12                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q15.1) MUTATED       86      1     14      4     25      9
  DEL PEAK 32(15Q15.1) WILD-TYPE     37     52     33     61     83     57
                                vv
clus                             CLUS_7
  DEL PEAK 32(15Q15.1) MUTATED        1
  DEL PEAK 32(15Q15.1) WILD-TYPE     74
D83V8, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           86                             37
  CLUS_2                            1                             52
  CLUS_3                           14                             33
  CLUS_4                            4                             61
  CLUS_5                           25                             83
  CLUS_6                            9                             57
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED      108     18     12
  DEL PEAK 32(15Q15.1) WILD-TYPE    115    132    145
D83V9, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                          108                            115
  CLUS_2                           18                            132
  CLUS_3                           12                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.1) MUTATED       51      1      9     77
  DEL PEAK 32(15Q15.1) WILD-TYPE    168     57    128     39
D83V10, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           51                            168
  CLUS_2                            1                             57
  CLUS_3                            9                            128
  CLUS_4                           77                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       70     34     18
  DEL PEAK 32(15Q15.1) WILD-TYPE    102     62    112
D83V11, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           70                            102
  CLUS_2                           34                             62
  CLUS_3                           18                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       67     12     43
  DEL PEAK 32(15Q15.1) WILD-TYPE     77    103     96
D83V12, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           67                             77
  CLUS_2                           12                            103
  CLUS_3                           43                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = DEL PEAK 33(15Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q23) MUTATED        0      6      0      0
  DEL PEAK 33(15Q23) WILD-TYPE     14     11     12     10
D84V1, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          6                           11
  CLUS_3                          0                           12
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q23) MUTATED        1      5      0      0      0
  DEL PEAK 33(15Q23) WILD-TYPE     13      4      7      7     16
D84V2, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          5                            4
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q23) MUTATED       95      4      7      6      3
  DEL PEAK 33(15Q23) WILD-TYPE     74    301     12      3     34
D84V3, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         95                           74
  CLUS_2                          4                          301
  CLUS_3                          7                           12
  CLUS_4                          6                            3
  CLUS_5                          3                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       77     16      8
  DEL PEAK 33(15Q23) WILD-TYPE     88     73    163
D84V4, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         77                           88
  CLUS_2                         16                           73
  CLUS_3                          8                          163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q23) MUTATED        2      8      3      1      2      4
  DEL PEAK 33(15Q23) WILD-TYPE     39     29     36     11     39     20
D84V5, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          2                           39
  CLUS_2                          8                           29
  CLUS_3                          3                           36
  CLUS_4                          1                           11
  CLUS_5                          2                           39
  CLUS_6                          4                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q23) MUTATED        6      7      4      3
  DEL PEAK 33(15Q23) WILD-TYPE     61     60     39     14
D84V6, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          6                           61
  CLUS_2                          7                           60
  CLUS_3                          4                           39
  CLUS_4                          3                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       98      8      9
  DEL PEAK 33(15Q23) WILD-TYPE    136    145    141
D84V7, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         98                          136
  CLUS_2                          8                          145
  CLUS_3                          9                          141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(15Q23) MUTATED       75      1     12      2     17      7      1
  DEL PEAK 33(15Q23) WILD-TYPE     48     52     35     63     91     59     74
D84V8, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         75                           48
  CLUS_2                          1                           52
  CLUS_3                         12                           35
  CLUS_4                          2                           63
  CLUS_5                         17                           91
  CLUS_6                          7                           59
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       88     16      9
  DEL PEAK 33(15Q23) WILD-TYPE    135    134    148
D84V9, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         88                          135
  CLUS_2                         16                          134
  CLUS_3                          9                          148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q23) MUTATED       41      1      6     65
  DEL PEAK 33(15Q23) WILD-TYPE    178     57    131     51
D84V10, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         41                          178
  CLUS_2                          1                           57
  CLUS_3                          6                          131
  CLUS_4                         65                           51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       64     22     12
  DEL PEAK 33(15Q23) WILD-TYPE    108     74    118
D84V11, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         64                          108
  CLUS_2                         22                           74
  CLUS_3                         12                          118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       59      7     32
  DEL PEAK 33(15Q23) WILD-TYPE     85    108    107
D84V12, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         59                           85
  CLUS_2                          7                          108
  CLUS_3                         32                          107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = DEL PEAK 34(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        1      6      0      0
  DEL PEAK 34(16P13.3) WILD-TYPE     13     11     12     10
D85V1, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16P13.3) MUTATED        3      4      0      0      0
  DEL PEAK 34(16P13.3) WILD-TYPE     11      5      7      7     16
D85V2, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16P13.3) MUTATED       84      2      3      1      2
  DEL PEAK 34(16P13.3) WILD-TYPE     85    303     16      8     35
D85V3, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           84                             85
  CLUS_2                            2                            303
  CLUS_3                            3                             16
  CLUS_4                            1                              8
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       62     17      4
  DEL PEAK 34(16P13.3) WILD-TYPE    103     72    167
D85V4, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           62                            103
  CLUS_2                           17                             72
  CLUS_3                            4                            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16P13.3) MUTATED        4      7      1      0      1      3
  DEL PEAK 34(16P13.3) WILD-TYPE     37     30     38     12     40     21
D85V5, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            7                             30
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        9      2      2      3
  DEL PEAK 34(16P13.3) WILD-TYPE     58     65     41     14
D85V6, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            2                             65
  CLUS_3                            2                             41
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       83      2      7
  DEL PEAK 34(16P13.3) WILD-TYPE    151    151    143
D85V7, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           83                            151
  CLUS_2                            2                            151
  CLUS_3                            7                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16P13.3) MUTATED       63      1      9      1     11      6
  DEL PEAK 34(16P13.3) WILD-TYPE     60     52     38     64     97     60
                                vv
clus                             CLUS_7
  DEL PEAK 34(16P13.3) MUTATED        1
  DEL PEAK 34(16P13.3) WILD-TYPE     74
D85V8, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           63                             60
  CLUS_2                            1                             52
  CLUS_3                            9                             38
  CLUS_4                            1                             64
  CLUS_5                           11                             97
  CLUS_6                            6                             60
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       74      9      7
  DEL PEAK 34(16P13.3) WILD-TYPE    149    141    150
D85V9, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           74                            149
  CLUS_2                            9                            141
  CLUS_3                            7                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED       31      0      5     54
  DEL PEAK 34(16P13.3) WILD-TYPE    188     58    132     62
D85V10, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           31                            188
  CLUS_2                            0                             58
  CLUS_3                            5                            132
  CLUS_4                           54                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       51     21     10
  DEL PEAK 34(16P13.3) WILD-TYPE    121     75    120
D85V11, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           51                            121
  CLUS_2                           21                             75
  CLUS_3                           10                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       49      6     27
  DEL PEAK 34(16P13.3) WILD-TYPE     95    109    112
D85V12, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           49                             95
  CLUS_2                            6                            109
  CLUS_3                           27                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = DEL PEAK 35(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q21) MUTATED        0      8      1      0
  DEL PEAK 35(16Q21) WILD-TYPE     14      9     11     10
D86V1, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          8                            9
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q21) MUTATED        1      7      0      0      1
  DEL PEAK 35(16Q21) WILD-TYPE     13      2      7      7     15
D86V2, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          7                            2
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          1                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q21) MUTATED      128     14      7      1      4
  DEL PEAK 35(16Q21) WILD-TYPE     41    291     12      8     33
D86V3, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                        128                           41
  CLUS_2                         14                          291
  CLUS_3                          7                           12
  CLUS_4                          1                            8
  CLUS_5                          4                           33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       93     26     16
  DEL PEAK 35(16Q21) WILD-TYPE     72     63    155
D86V4, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         93                           72
  CLUS_2                         26                           63
  CLUS_3                         16                          155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16Q21) MUTATED        6     11      3      1      6      7
  DEL PEAK 35(16Q21) WILD-TYPE     35     26     36     11     35     17
D86V5, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          6                           35
  CLUS_2                         11                           26
  CLUS_3                          3                           36
  CLUS_4                          1                           11
  CLUS_5                          6                           35
  CLUS_6                          7                           17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q21) MUTATED       12     11      6      5
  DEL PEAK 35(16Q21) WILD-TYPE     55     56     37     12
D86V6, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         12                           55
  CLUS_2                         11                           56
  CLUS_3                          6                           37
  CLUS_4                          5                           12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED      123     14     16
  DEL PEAK 35(16Q21) WILD-TYPE    111    139    134
D86V7, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                        123                          111
  CLUS_2                         14                          139
  CLUS_3                         16                          134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 35(16Q21) MUTATED       89      7     17      3     22     11      4
  DEL PEAK 35(16Q21) WILD-TYPE     34     46     30     62     86     55     71
D86V8, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         89                           34
  CLUS_2                          7                           46
  CLUS_3                         17                           30
  CLUS_4                          3                           62
  CLUS_5                         22                           86
  CLUS_6                         11                           55
  CLUS_7                          4                           71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED      108     25     17
  DEL PEAK 35(16Q21) WILD-TYPE    115    125    140
D86V9, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                        108                          115
  CLUS_2                         25                          125
  CLUS_3                         17                          140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q21) MUTATED       54      6     14     76
  DEL PEAK 35(16Q21) WILD-TYPE    165     52    123     40
D86V10, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         54                          165
  CLUS_2                          6                           52
  CLUS_3                         14                          123
  CLUS_4                         76                           40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       78     31     22
  DEL PEAK 35(16Q21) WILD-TYPE     94     65    108
D86V11, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         78                           94
  CLUS_2                         31                           65
  CLUS_3                         22                          108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       72     16     43
  DEL PEAK 35(16Q21) WILD-TYPE     72     99     96
D86V12, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         72                           72
  CLUS_2                         16                           99
  CLUS_3                         43                           96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = DEL PEAK 36(16Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q22.3) MUTATED        1      7      2      0
  DEL PEAK 36(16Q22.3) WILD-TYPE     13     10     10     10
D87V1, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            7                             10
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16Q22.3) MUTATED        4      5      0      0      1
  DEL PEAK 36(16Q22.3) WILD-TYPE     10      4      7      7     15
D87V2, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16Q22.3) MUTATED      129     17      7      1      4
  DEL PEAK 36(16Q22.3) WILD-TYPE     40    288     12      8     33
D87V3, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                          129                             40
  CLUS_2                           17                            288
  CLUS_3                            7                             12
  CLUS_4                            1                              8
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q22.3) MUTATED       91     28     19
  DEL PEAK 36(16Q22.3) WILD-TYPE     74     61    152
D87V4, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           91                             74
  CLUS_2                           28                             61
  CLUS_3                           19                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16Q22.3) MUTATED        8     14      4      2      6      4
  DEL PEAK 36(16Q22.3) WILD-TYPE     33     23     35     10     35     20
D87V5, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           14                             23
  CLUS_3                            4                             35
  CLUS_4                            2                             10
  CLUS_5                            6                             35
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q22.3) MUTATED       15     13      8      2
  DEL PEAK 36(16Q22.3) WILD-TYPE     52     54     35     15
D87V6, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           15                             52
  CLUS_2                           13                             54
  CLUS_3                            8                             35
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q22.3) MUTATED      125     15     18
  DEL PEAK 36(16Q22.3) WILD-TYPE    109    138    132
D87V7, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                          125                            109
  CLUS_2                           15                            138
  CLUS_3                           18                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16Q22.3) MUTATED       88      8     18      3     24     12
  DEL PEAK 36(16Q22.3) WILD-TYPE     35     45     29     62     84     54
                                vv
clus                             CLUS_7
  DEL PEAK 36(16Q22.3) MUTATED        5
  DEL PEAK 36(16Q22.3) WILD-TYPE     70
D87V8, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           88                             35
  CLUS_2                            8                             45
  CLUS_3                           18                             29
  CLUS_4                            3                             62
  CLUS_5                           24                             84
  CLUS_6                           12                             54
  CLUS_7                            5                             70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q22.3) MUTATED      110     25     19
  DEL PEAK 36(16Q22.3) WILD-TYPE    113    125    138
D87V9, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                          110                            113
  CLUS_2                           25                            125
  CLUS_3                           19                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q22.3) MUTATED       55      6     16     77
  DEL PEAK 36(16Q22.3) WILD-TYPE    164     52    121     39
D87V10, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           55                            164
  CLUS_2                            6                             52
  CLUS_3                           16                            121
  CLUS_4                           77                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q22.3) MUTATED       75     34     25
  DEL PEAK 36(16Q22.3) WILD-TYPE     97     62    105
D87V11, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           75                             97
  CLUS_2                           34                             62
  CLUS_3                           25                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q22.3) MUTATED       68     16     50
  DEL PEAK 36(16Q22.3) WILD-TYPE     76     99     89
D87V12, multiclass
        clus
vv       DEL PEAK 36(16Q22.3) MUTATED DEL PEAK 36(16Q22.3) WILD-TYPE
  CLUS_1                           68                             76
  CLUS_2                           16                             99
  CLUS_3                           50                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = DEL PEAK 37(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED        1      9      2      0
  DEL PEAK 37(16Q23.1) WILD-TYPE     13      8     10     10
D88V1, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            9                              8
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(16Q23.1) MUTATED        4      7      0      0      1
  DEL PEAK 37(16Q23.1) WILD-TYPE     10      2      7      7     15
D88V2, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            7                              2
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(16Q23.1) MUTATED      134     19      8      1      4
  DEL PEAK 37(16Q23.1) WILD-TYPE     35    286     11      8     33
D88V3, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                          134                             35
  CLUS_2                           19                            286
  CLUS_3                            8                             11
  CLUS_4                            1                              8
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       96     27     19
  DEL PEAK 37(16Q23.1) WILD-TYPE     69     62    152
D88V4, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           96                             69
  CLUS_2                           27                             62
  CLUS_3                           19                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q23.1) MUTATED        8     15      4      2      6      6
  DEL PEAK 37(16Q23.1) WILD-TYPE     33     22     35     10     35     18
D88V5, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           15                             22
  CLUS_3                            4                             35
  CLUS_4                            2                             10
  CLUS_5                            6                             35
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       16     13      8      4
  DEL PEAK 37(16Q23.1) WILD-TYPE     51     54     35     13
D88V6, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           16                             51
  CLUS_2                           13                             54
  CLUS_3                            8                             35
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED      133     16     17
  DEL PEAK 37(16Q23.1) WILD-TYPE    101    137    133
D88V7, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                          133                            101
  CLUS_2                           16                            137
  CLUS_3                           17                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q23.1) MUTATED       93      8     20      4     25     11
  DEL PEAK 37(16Q23.1) WILD-TYPE     30     45     27     61     83     55
                                vv
clus                             CLUS_7
  DEL PEAK 37(16Q23.1) MUTATED        5
  DEL PEAK 37(16Q23.1) WILD-TYPE     70
D88V8, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           93                             30
  CLUS_2                            8                             45
  CLUS_3                           20                             27
  CLUS_4                            4                             61
  CLUS_5                           25                             83
  CLUS_6                           11                             55
  CLUS_7                            5                             70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED      118     25     18
  DEL PEAK 37(16Q23.1) WILD-TYPE    105    125    139
D88V9, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                          118                            105
  CLUS_2                           25                            125
  CLUS_3                           18                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       55      6     15     85
  DEL PEAK 37(16Q23.1) WILD-TYPE    164     52    122     31
D88V10, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           55                            164
  CLUS_2                            6                             52
  CLUS_3                           15                            122
  CLUS_4                           85                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       80     35     23
  DEL PEAK 37(16Q23.1) WILD-TYPE     92     61    107
D88V11, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           80                             92
  CLUS_2                           35                             61
  CLUS_3                           23                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       72     15     51
  DEL PEAK 37(16Q23.1) WILD-TYPE     72    100     88
D88V12, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           72                             72
  CLUS_2                           15                            100
  CLUS_3                           51                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = DEL PEAK 38(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P13.3) MUTATED        0      8      1      0
  DEL PEAK 38(17P13.3) WILD-TYPE     14      9     11     10
D89V1, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              9
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(17P13.3) MUTATED        1      7      1      0      0
  DEL PEAK 38(17P13.3) WILD-TYPE     13      2      6      7     16
D89V2, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            7                              2
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(17P13.3) MUTATED      109      4      5      1      3
  DEL PEAK 38(17P13.3) WILD-TYPE     60    301     14      8     34
D89V3, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                          109                             60
  CLUS_2                            4                            301
  CLUS_3                            5                             14
  CLUS_4                            1                              8
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P13.3) MUTATED       71     20     13
  DEL PEAK 38(17P13.3) WILD-TYPE     94     69    158
D89V4, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           71                             94
  CLUS_2                           20                             69
  CLUS_3                           13                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(17P13.3) MUTATED        3     10      3      0      2      8
  DEL PEAK 38(17P13.3) WILD-TYPE     38     27     36     12     39     16
D89V5, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                           10                             27
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            8                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P13.3) MUTATED       10      8      4      4
  DEL PEAK 38(17P13.3) WILD-TYPE     57     59     39     13
D89V6, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            8                             59
  CLUS_3                            4                             39
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P13.3) MUTATED      100      6     15
  DEL PEAK 38(17P13.3) WILD-TYPE    134    147    135
D89V7, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                          100                            134
  CLUS_2                            6                            147
  CLUS_3                           15                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(17P13.3) MUTATED       79      1      8      3     16     13
  DEL PEAK 38(17P13.3) WILD-TYPE     44     52     39     62     92     53
                                vv
clus                             CLUS_7
  DEL PEAK 38(17P13.3) MUTATED        1
  DEL PEAK 38(17P13.3) WILD-TYPE     74
D89V8, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           79                             44
  CLUS_2                            1                             52
  CLUS_3                            8                             39
  CLUS_4                            3                             62
  CLUS_5                           16                             92
  CLUS_6                           13                             53
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P13.3) MUTATED       88     16     15
  DEL PEAK 38(17P13.3) WILD-TYPE    135    134    142
D89V9, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           88                            135
  CLUS_2                           16                            134
  CLUS_3                           15                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P13.3) MUTATED       46      1     12     60
  DEL PEAK 38(17P13.3) WILD-TYPE    173     57    125     56
D89V10, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           46                            173
  CLUS_2                            1                             57
  CLUS_3                           12                            125
  CLUS_4                           60                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P13.3) MUTATED       60     26     14
  DEL PEAK 38(17P13.3) WILD-TYPE    112     70    116
D89V11, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           60                            112
  CLUS_2                           26                             70
  CLUS_3                           14                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P13.3) MUTATED       53     15     32
  DEL PEAK 38(17P13.3) WILD-TYPE     91    100    107
D89V12, multiclass
        clus
vv       DEL PEAK 38(17P13.3) MUTATED DEL PEAK 38(17P13.3) WILD-TYPE
  CLUS_1                           53                             91
  CLUS_2                           15                            100
  CLUS_3                           32                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = DEL PEAK 39(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED        0      8      1      0
  DEL PEAK 39(17P11.2) WILD-TYPE     14      9     11     10
D90V1, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              9
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17P11.2) MUTATED        0      8      1      0      0
  DEL PEAK 39(17P11.2) WILD-TYPE     14      1      6      7     16
D90V2, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              1
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17P11.2) MUTATED      116      4      4      1      3
  DEL PEAK 39(17P11.2) WILD-TYPE     53    301     15      8     34
D90V3, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                          116                             53
  CLUS_2                            4                            301
  CLUS_3                            4                             15
  CLUS_4                            1                              8
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       79     21     12
  DEL PEAK 39(17P11.2) WILD-TYPE     86     68    159
D90V4, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           79                             86
  CLUS_2                           21                             68
  CLUS_3                           12                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17P11.2) MUTATED        6      8      3      0      1      8
  DEL PEAK 39(17P11.2) WILD-TYPE     35     29     36     12     40     16
D90V5, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            8                             29
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            8                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED       10      8      3      5
  DEL PEAK 39(17P11.2) WILD-TYPE     57     59     40     12
D90V6, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            8                             59
  CLUS_3                            3                             40
  CLUS_4                            5                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED      110      4     14
  DEL PEAK 39(17P11.2) WILD-TYPE    124    149    136
D90V7, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                          110                            124
  CLUS_2                            4                            149
  CLUS_3                           14                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17P11.2) MUTATED       85      1     10      2     17     12
  DEL PEAK 39(17P11.2) WILD-TYPE     38     52     37     63     91     54
                                vv
clus                             CLUS_7
  DEL PEAK 39(17P11.2) MUTATED        1
  DEL PEAK 39(17P11.2) WILD-TYPE     74
D90V8, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           85                             38
  CLUS_2                            1                             52
  CLUS_3                           10                             37
  CLUS_4                            2                             63
  CLUS_5                           17                             91
  CLUS_6                           12                             54
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       94     14     16
  DEL PEAK 39(17P11.2) WILD-TYPE    129    136    141
D90V9, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           94                            129
  CLUS_2                           14                            136
  CLUS_3                           16                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED       45      0     13     66
  DEL PEAK 39(17P11.2) WILD-TYPE    174     58    124     50
D90V10, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           45                            174
  CLUS_2                            0                             58
  CLUS_3                           13                            124
  CLUS_4                           66                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       63     29     15
  DEL PEAK 39(17P11.2) WILD-TYPE    109     67    115
D90V11, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           63                            109
  CLUS_2                           29                             67
  CLUS_3                           15                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       57     15     35
  DEL PEAK 39(17P11.2) WILD-TYPE     87    100    104
D90V12, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           57                             87
  CLUS_2                           15                            100
  CLUS_3                           35                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = DEL PEAK 40(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED        0      7      0      0
  DEL PEAK 40(17Q11.2) WILD-TYPE     14     10     12     10
D91V1, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            7                             10
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17Q11.2) MUTATED        0      7      0      0      0
  DEL PEAK 40(17Q11.2) WILD-TYPE     14      2      7      7     16
D91V2, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            7                              2
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17Q11.2) MUTATED       93      2      5      1      4
  DEL PEAK 40(17Q11.2) WILD-TYPE     76    303     14      8     33
D91V3, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           93                             76
  CLUS_2                            2                            303
  CLUS_3                            5                             14
  CLUS_4                            1                              8
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       58     18     14
  DEL PEAK 40(17Q11.2) WILD-TYPE    107     71    157
D91V4, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           58                            107
  CLUS_2                           18                             71
  CLUS_3                           14                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17Q11.2) MUTATED        3      9      3      0      2      6
  DEL PEAK 40(17Q11.2) WILD-TYPE     38     28     36     12     39     18
D91V5, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            9                             28
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED        8      8      4      3
  DEL PEAK 40(17Q11.2) WILD-TYPE     59     59     39     14
D91V6, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                            8                             59
  CLUS_3                            4                             39
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       84      6     14
  DEL PEAK 40(17Q11.2) WILD-TYPE    150    147    136
D91V7, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           84                            150
  CLUS_2                            6                            147
  CLUS_3                           14                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17Q11.2) MUTATED       62      1      6      3     19     11
  DEL PEAK 40(17Q11.2) WILD-TYPE     61     52     41     62     89     55
                                vv
clus                             CLUS_7
  DEL PEAK 40(17Q11.2) MUTATED        2
  DEL PEAK 40(17Q11.2) WILD-TYPE     73
D91V8, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           62                             61
  CLUS_2                            1                             52
  CLUS_3                            6                             41
  CLUS_4                            3                             62
  CLUS_5                           19                             89
  CLUS_6                           11                             55
  CLUS_7                            2                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       75     10     16
  DEL PEAK 40(17Q11.2) WILD-TYPE    148    140    141
D91V9, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           75                            148
  CLUS_2                           10                            140
  CLUS_3                           16                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       40      1     13     47
  DEL PEAK 40(17Q11.2) WILD-TYPE    179     57    124     69
D91V10, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           40                            179
  CLUS_2                            1                             57
  CLUS_3                           13                            124
  CLUS_4                           47                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       50     21     17
  DEL PEAK 40(17Q11.2) WILD-TYPE    122     75    113
D91V11, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           50                            122
  CLUS_2                           21                             75
  CLUS_3                           17                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       44     15     29
  DEL PEAK 40(17Q11.2) WILD-TYPE    100    100    110
D91V12, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           44                            100
  CLUS_2                           15                            100
  CLUS_3                           29                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = DEL PEAK 41(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q21.31) MUTATED        0      9      0      0
  DEL PEAK 41(17Q21.31) WILD-TYPE     14      8     12     10
D92V1, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             9                               8
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q21.31) MUTATED        1      8      0      0      0
  DEL PEAK 41(17Q21.31) WILD-TYPE     13      1      7      7     16
D92V2, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             8                               1
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q21.31) MUTATED      104      1      4      1      4
  DEL PEAK 41(17Q21.31) WILD-TYPE     65    304     15      8     33
D92V3, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                           104                              65
  CLUS_2                             1                             304
  CLUS_3                             4                              15
  CLUS_4                             1                               8
  CLUS_5                             4                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       64     22     13
  DEL PEAK 41(17Q21.31) WILD-TYPE    101     67    158
D92V4, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            64                             101
  CLUS_2                            22                              67
  CLUS_3                            13                             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17Q21.31) MUTATED        4     10      3      0      1      6
  DEL PEAK 41(17Q21.31) WILD-TYPE     37     27     36     12     40     18
D92V5, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                            10                              27
  CLUS_3                             3                              36
  CLUS_4                             0                              12
  CLUS_5                             1                              40
  CLUS_6                             6                              18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q21.31) MUTATED       11      7      3      3
  DEL PEAK 41(17Q21.31) WILD-TYPE     56     60     40     14
D92V6, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            11                              56
  CLUS_2                             7                              60
  CLUS_3                             3                              40
  CLUS_4                             3                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       93      5     15
  DEL PEAK 41(17Q21.31) WILD-TYPE    141    148    135
D92V7, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            93                             141
  CLUS_2                             5                             148
  CLUS_3                            15                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17Q21.31) MUTATED       72      1      6      3     18     12
  DEL PEAK 41(17Q21.31) WILD-TYPE     51     52     41     62     90     54
                                 vv
clus                              CLUS_7
  DEL PEAK 41(17Q21.31) MUTATED        1
  DEL PEAK 41(17Q21.31) WILD-TYPE     74
D92V8, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            72                              51
  CLUS_2                             1                              52
  CLUS_3                             6                              41
  CLUS_4                             3                              62
  CLUS_5                            18                              90
  CLUS_6                            12                              54
  CLUS_7                             1                              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       78     14     17
  DEL PEAK 41(17Q21.31) WILD-TYPE    145    136    140
D92V9, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            78                             145
  CLUS_2                            14                             136
  CLUS_3                            17                             140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q21.31) MUTATED       41      0     14     54
  DEL PEAK 41(17Q21.31) WILD-TYPE    178     58    123     62
D92V10, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            41                             178
  CLUS_2                             0                              58
  CLUS_3                            14                             123
  CLUS_4                            54                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       58     21     17
  DEL PEAK 41(17Q21.31) WILD-TYPE    114     75    113
D92V11, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            58                             114
  CLUS_2                            21                              75
  CLUS_3                            17                             113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       49     17     30
  DEL PEAK 41(17Q21.31) WILD-TYPE     95     98    109
D92V12, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            49                              95
  CLUS_2                            17                              98
  CLUS_3                            30                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = DEL PEAK 42(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED        1      3      1      0
  DEL PEAK 42(18Q21.2) WILD-TYPE     13     14     11     10
D93V1, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q21.2) MUTATED        2      2      1      0      0
  DEL PEAK 42(18Q21.2) WILD-TYPE     12      7      6      7     16
D93V2, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q21.2) MUTATED       74      2      8      4      3
  DEL PEAK 42(18Q21.2) WILD-TYPE     95    303     11      5     34
D93V3, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           74                             95
  CLUS_2                            2                            303
  CLUS_3                            8                             11
  CLUS_4                            4                              5
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       57     14     10
  DEL PEAK 42(18Q21.2) WILD-TYPE    108     75    161
D93V4, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           57                            108
  CLUS_2                           14                             75
  CLUS_3                           10                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q21.2) MUTATED        6      7      1      1      1      4
  DEL PEAK 42(18Q21.2) WILD-TYPE     35     30     38     11     40     20
D93V5, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            7                             30
  CLUS_3                            1                             38
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED        9      6      3      2
  DEL PEAK 42(18Q21.2) WILD-TYPE     58     61     40     15
D93V6, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            6                             61
  CLUS_3                            3                             40
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       75      5     11
  DEL PEAK 42(18Q21.2) WILD-TYPE    159    148    139
D93V7, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           75                            159
  CLUS_2                            5                            148
  CLUS_3                           11                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q21.2) MUTATED       41      1     15      1     24      9
  DEL PEAK 42(18Q21.2) WILD-TYPE     82     52     32     64     84     57
                                vv
clus                             CLUS_7
  DEL PEAK 42(18Q21.2) MUTATED        0
  DEL PEAK 42(18Q21.2) WILD-TYPE     75
D93V8, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           41                             82
  CLUS_2                            1                             52
  CLUS_3                           15                             32
  CLUS_4                            1                             64
  CLUS_5                           24                             84
  CLUS_6                            9                             57
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       71      8     11
  DEL PEAK 42(18Q21.2) WILD-TYPE    152    142    146
D93V9, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           71                            152
  CLUS_2                            8                            142
  CLUS_3                           11                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       35      0      8     47
  DEL PEAK 42(18Q21.2) WILD-TYPE    184     58    129     69
D93V10, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           35                            184
  CLUS_2                            0                             58
  CLUS_3                            8                            129
  CLUS_4                           47                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       46     19     14
  DEL PEAK 42(18Q21.2) WILD-TYPE    126     77    116
D93V11, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           46                            126
  CLUS_2                           19                             77
  CLUS_3                           14                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       44     10     25
  DEL PEAK 42(18Q21.2) WILD-TYPE    100    105    114
D93V12, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           44                            100
  CLUS_2                           10                            105
  CLUS_3                           25                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = DEL PEAK 43(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED        1      3      1      0
  DEL PEAK 43(18Q23) WILD-TYPE     13     14     11     10
D94V1, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          3                           14
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q23) MUTATED        2      2      1      0      0
  DEL PEAK 43(18Q23) WILD-TYPE     12      7      6      7     16
D94V2, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          2                            7
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q23) MUTATED       80      2      9      3      4
  DEL PEAK 43(18Q23) WILD-TYPE     89    303     10      6     33
D94V3, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         80                           89
  CLUS_2                          2                          303
  CLUS_3                          9                           10
  CLUS_4                          3                            6
  CLUS_5                          4                           33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       62     14     10
  DEL PEAK 43(18Q23) WILD-TYPE    103     75    161
D94V4, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         62                          103
  CLUS_2                         14                           75
  CLUS_3                         10                          161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q23) MUTATED        6      9      1      1      2      3
  DEL PEAK 43(18Q23) WILD-TYPE     35     28     38     11     39     21
D94V5, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          6                           35
  CLUS_2                          9                           28
  CLUS_3                          1                           38
  CLUS_4                          1                           11
  CLUS_5                          2                           39
  CLUS_6                          3                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED        9      8      4      1
  DEL PEAK 43(18Q23) WILD-TYPE     58     59     39     16
D94V6, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          9                           58
  CLUS_2                          8                           59
  CLUS_3                          4                           39
  CLUS_4                          1                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       82      5     11
  DEL PEAK 43(18Q23) WILD-TYPE    152    148    139
D94V7, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         82                          152
  CLUS_2                          5                          148
  CLUS_3                         11                          139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 43(18Q23) MUTATED       46      1     19      1     22      8      1
  DEL PEAK 43(18Q23) WILD-TYPE     77     52     28     64     86     58     74
D94V8, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         46                           77
  CLUS_2                          1                           52
  CLUS_3                         19                           28
  CLUS_4                          1                           64
  CLUS_5                         22                           86
  CLUS_6                          8                           58
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       74     10     12
  DEL PEAK 43(18Q23) WILD-TYPE    149    140    145
D94V9, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         74                          149
  CLUS_2                         10                          140
  CLUS_3                         12                          145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED       33      1      9     53
  DEL PEAK 43(18Q23) WILD-TYPE    186     57    128     63
D94V10, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         33                          186
  CLUS_2                          1                           57
  CLUS_3                          9                          128
  CLUS_4                         53                           63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       49     22     13
  DEL PEAK 43(18Q23) WILD-TYPE    123     74    117
D94V11, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         49                          123
  CLUS_2                         22                           74
  CLUS_3                         13                          117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       44     11     29
  DEL PEAK 43(18Q23) WILD-TYPE    100    104    110
D94V12, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         44                          100
  CLUS_2                         11                          104
  CLUS_3                         29                          110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = DEL PEAK 44(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED        0     11      0      0
  DEL PEAK 44(19P13.3) WILD-TYPE     14      6     12     10
D95V1, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                           11                              6
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED        2      9      0      0      0
  DEL PEAK 44(19P13.3) WILD-TYPE     12      0      7      7     16
D95V2, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            9                              0
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED      145      0      5      3      1
  DEL PEAK 44(19P13.3) WILD-TYPE     24    305     14      6     36
D95V3, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          145                             24
  CLUS_2                            0                            305
  CLUS_3                            5                             14
  CLUS_4                            3                              6
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED      108     23      5
  DEL PEAK 44(19P13.3) WILD-TYPE     57     66    166
D95V4, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          108                             57
  CLUS_2                           23                             66
  CLUS_3                            5                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED        7     14      2      0      1      7
  DEL PEAK 44(19P13.3) WILD-TYPE     34     23     37     12     40     17
D95V5, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            7                             34
  CLUS_2                           14                             23
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            7                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       16      8      2      5
  DEL PEAK 44(19P13.3) WILD-TYPE     51     59     41     12
D95V6, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           16                             51
  CLUS_2                            8                             59
  CLUS_3                            2                             41
  CLUS_4                            5                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED      140      4      9
  DEL PEAK 44(19P13.3) WILD-TYPE     94    149    141
D95V7, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          140                             94
  CLUS_2                            4                            149
  CLUS_3                            9                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED      102      1     20      2     21      7
  DEL PEAK 44(19P13.3) WILD-TYPE     21     52     27     63     87     59
                                vv
clus                             CLUS_7
  DEL PEAK 44(19P13.3) MUTATED        0
  DEL PEAK 44(19P13.3) WILD-TYPE     75
D95V8, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          102                             21
  CLUS_2                            1                             52
  CLUS_3                           20                             27
  CLUS_4                            2                             63
  CLUS_5                           21                             87
  CLUS_6                            7                             59
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED      127     12     10
  DEL PEAK 44(19P13.3) WILD-TYPE     96    138    147
D95V9, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          127                             96
  CLUS_2                           12                            138
  CLUS_3                           10                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       45      0     10     94
  DEL PEAK 44(19P13.3) WILD-TYPE    174     58    127     22
D95V10, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           45                            174
  CLUS_2                            0                             58
  CLUS_3                           10                            127
  CLUS_4                           94                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       83     31     18
  DEL PEAK 44(19P13.3) WILD-TYPE     89     65    112
D95V11, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           83                             89
  CLUS_2                           31                             65
  CLUS_3                           18                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       78     11     43
  DEL PEAK 44(19P13.3) WILD-TYPE     66    104     96
D95V12, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           78                             66
  CLUS_2                           11                            104
  CLUS_3                           43                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = DEL PEAK 45(19P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P12) MUTATED        1      1      0      0
  DEL PEAK 45(19P12) WILD-TYPE     13     16     12     10
D96V1, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 45(19P12) MUTATED"
clus
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 45(19P12) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P12) MUTATED        0      1      0      1      0
  DEL PEAK 45(19P12) WILD-TYPE     14      8      7      6     16
D96V2, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 45(19P12) MUTATED"
clus
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 45(19P12) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P12) MUTATED       50      1      5      1      1
  DEL PEAK 45(19P12) WILD-TYPE    119    304     14      8     36
D96V3, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         50                          119
  CLUS_2                          1                          304
  CLUS_3                          5                           14
  CLUS_4                          1                            8
  CLUS_5                          1                           36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       38     10      4
  DEL PEAK 45(19P12) WILD-TYPE    127     79    167
D96V4, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         38                          127
  CLUS_2                         10                           79
  CLUS_3                          4                          167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19P12) MUTATED        1      5      1      0      2      1
  DEL PEAK 45(19P12) WILD-TYPE     40     32     38     12     39     23
D96V5, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          1                           40
  CLUS_2                          5                           32
  CLUS_3                          1                           38
  CLUS_4                          0                           12
  CLUS_5                          2                           39
  CLUS_6                          1                           23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P12) MUTATED        4      2      4      0
  DEL PEAK 45(19P12) WILD-TYPE     63     65     39     17
D96V6, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          4                           63
  CLUS_2                          2                           65
  CLUS_3                          4                           39
  CLUS_4                          0                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       47      5      6
  DEL PEAK 45(19P12) WILD-TYPE    187    148    144
D96V7, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         47                          187
  CLUS_2                          5                          148
  CLUS_3                          6                          144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 45(19P12) MUTATED       32      1      9      1     11      4      0
  DEL PEAK 45(19P12) WILD-TYPE     91     52     38     64     97     62     75
D96V8, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         32                           91
  CLUS_2                          1                           52
  CLUS_3                          9                           38
  CLUS_4                          1                           64
  CLUS_5                         11                           97
  CLUS_6                          4                           62
  CLUS_7                          0                           75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       43      9      5
  DEL PEAK 45(19P12) WILD-TYPE    180    141    152
D96V9, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         43                          180
  CLUS_2                          9                          141
  CLUS_3                          5                          152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P12) MUTATED       24      1      4     28
  DEL PEAK 45(19P12) WILD-TYPE    195     57    133     88
D96V10, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         24                          195
  CLUS_2                          1                           57
  CLUS_3                          4                          133
  CLUS_4                         28                           88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       30     10     10
  DEL PEAK 45(19P12) WILD-TYPE    142     86    120
D96V11, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         30                          142
  CLUS_2                         10                           86
  CLUS_3                         10                          120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       32      5     13
  DEL PEAK 45(19P12) WILD-TYPE    112    110    126
D96V12, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         32                          112
  CLUS_2                          5                          110
  CLUS_3                         13                          126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = DEL PEAK 46(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.43) MUTATED        0      8      1      0
  DEL PEAK 46(19Q13.43) WILD-TYPE     14      9     11     10
D97V1, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             8                               9
  CLUS_3                             1                              11
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.43) MUTATED        1      7      1      0      0
  DEL PEAK 46(19Q13.43) WILD-TYPE     13      2      6      7     16
D97V2, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             7                               2
  CLUS_3                             1                               6
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.43) MUTATED       61      1      3      1      1
  DEL PEAK 46(19Q13.43) WILD-TYPE    108    304     16      8     36
D97V3, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            61                             108
  CLUS_2                             1                             304
  CLUS_3                             3                              16
  CLUS_4                             1                               8
  CLUS_5                             1                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       43     11      2
  DEL PEAK 46(19Q13.43) WILD-TYPE    122     78    169
D97V4, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            43                             122
  CLUS_2                            11                              78
  CLUS_3                             2                             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(19Q13.43) MUTATED        2      5      1      0      1      4
  DEL PEAK 46(19Q13.43) WILD-TYPE     39     32     38     12     40     20
D97V5, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             2                              39
  CLUS_2                             5                              32
  CLUS_3                             1                              38
  CLUS_4                             0                              12
  CLUS_5                             1                              40
  CLUS_6                             4                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.43) MUTATED        4      5      1      3
  DEL PEAK 46(19Q13.43) WILD-TYPE     63     62     42     14
D97V6, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             4                              63
  CLUS_2                             5                              62
  CLUS_3                             1                              42
  CLUS_4                             3                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       59      3      4
  DEL PEAK 46(19Q13.43) WILD-TYPE    175    150    146
D97V7, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            59                             175
  CLUS_2                             3                             150
  CLUS_3                             4                             146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(19Q13.43) MUTATED       44      1      8      0     11      2
  DEL PEAK 46(19Q13.43) WILD-TYPE     79     52     39     65     97     64
                                 vv
clus                              CLUS_7
  DEL PEAK 46(19Q13.43) MUTATED        0
  DEL PEAK 46(19Q13.43) WILD-TYPE     75
D97V8, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            44                              79
  CLUS_2                             1                              52
  CLUS_3                             8                              39
  CLUS_4                             0                              65
  CLUS_5                            11                              97
  CLUS_6                             2                              64
  CLUS_7                             0                              75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       55      4      4
  DEL PEAK 46(19Q13.43) WILD-TYPE    168    146    153
D97V9, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            55                             168
  CLUS_2                             4                             146
  CLUS_3                             4                             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.43) MUTATED       27      0      2     34
  DEL PEAK 46(19Q13.43) WILD-TYPE    192     58    135     82
D97V10, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            27                             192
  CLUS_2                             0                              58
  CLUS_3                             2                             135
  CLUS_4                            34                              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       32     15      9
  DEL PEAK 46(19Q13.43) WILD-TYPE    140     81    121
D97V11, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            32                             140
  CLUS_2                            15                              81
  CLUS_3                             9                             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       29      2     25
  DEL PEAK 46(19Q13.43) WILD-TYPE    115    113    114
D97V12, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            29                             115
  CLUS_2                             2                             113
  CLUS_3                            25                             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = DEL PEAK 47(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED        1      1      1      0
  DEL PEAK 47(20P12.1) WILD-TYPE     13     16     11     10
D98V1, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                             16
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED        1      1      1      0      0
  DEL PEAK 47(20P12.1) WILD-TYPE     13      8      6      7     16
D98V2, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                              8
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED       25      6      2      1      2
  DEL PEAK 47(20P12.1) WILD-TYPE    144    299     17      8     35
D98V3, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           25                            144
  CLUS_2                            6                            299
  CLUS_3                            2                             17
  CLUS_4                            1                              8
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       17      5      6
  DEL PEAK 47(20P12.1) WILD-TYPE    148     84    165
D98V4, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           17                            148
  CLUS_2                            5                             84
  CLUS_3                            6                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(20P12.1) MUTATED        1      3      1      0      1      4
  DEL PEAK 47(20P12.1) WILD-TYPE     40     34     38     12     40     20
D98V5, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             40
  CLUS_2                            3                             34
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED        3      3      2      2
  DEL PEAK 47(20P12.1) WILD-TYPE     64     64     41     15
D98V6, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            3                             64
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       27      3      6
  DEL PEAK 47(20P12.1) WILD-TYPE    207    150    144
D98V7, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           27                            207
  CLUS_2                            3                            150
  CLUS_3                            6                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(20P12.1) MUTATED       17      3      6      0      6      2
  DEL PEAK 47(20P12.1) WILD-TYPE    106     50     41     65    102     64
                                vv
clus                             CLUS_7
  DEL PEAK 47(20P12.1) MUTATED        2
  DEL PEAK 47(20P12.1) WILD-TYPE     73
D98V8, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           17                            106
  CLUS_2                            3                             50
  CLUS_3                            6                             41
  CLUS_4                            0                             65
  CLUS_5                            6                            102
  CLUS_6                            2                             64
  CLUS_7                            2                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       26      5      4
  DEL PEAK 47(20P12.1) WILD-TYPE    197    145    153
D98V9, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           26                            197
  CLUS_2                            5                            145
  CLUS_3                            4                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED       10      1      6     18
  DEL PEAK 47(20P12.1) WILD-TYPE    209     57    131     98
D98V10, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           10                            209
  CLUS_2                            1                             57
  CLUS_3                            6                            131
  CLUS_4                           18                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       18      6      5
  DEL PEAK 47(20P12.1) WILD-TYPE    154     90    125
D98V11, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           18                            154
  CLUS_2                            6                             90
  CLUS_3                            5                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       15      5      9
  DEL PEAK 47(20P12.1) WILD-TYPE    129    110    130
D98V12, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           15                            129
  CLUS_2                            5                            110
  CLUS_3                            9                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = DEL PEAK 48(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED        0      9      0      0
  DEL PEAK 48(22Q13.32) WILD-TYPE     14      8     12     10
D99V1, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             9                               8
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(22Q13.32) MUTATED        2      7      0      0      0
  DEL PEAK 48(22Q13.32) WILD-TYPE     12      2      7      7     16
D99V2, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             7                               2
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(22Q13.32) MUTATED      122      7      4      5      3
  DEL PEAK 48(22Q13.32) WILD-TYPE     47    298     15      4     34
D99V3, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                           122                              47
  CLUS_2                             7                             298
  CLUS_3                             4                              15
  CLUS_4                             5                               4
  CLUS_5                             3                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       84     23     18
  DEL PEAK 48(22Q13.32) WILD-TYPE     81     66    153
D99V4, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            84                              81
  CLUS_2                            23                              66
  CLUS_3                            18                             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q13.32) MUTATED        9     13      3      1      1      5
  DEL PEAK 48(22Q13.32) WILD-TYPE     32     24     36     11     40     19
D99V5, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                             9                              32
  CLUS_2                            13                              24
  CLUS_3                             3                              36
  CLUS_4                             1                              11
  CLUS_5                             1                              40
  CLUS_6                             5                              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       15     10      3      4
  DEL PEAK 48(22Q13.32) WILD-TYPE     52     57     40     13
D99V6, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            15                              52
  CLUS_2                            10                              57
  CLUS_3                             3                              40
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED      113      8     19
  DEL PEAK 48(22Q13.32) WILD-TYPE    121    145    131
D99V7, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                           113                             121
  CLUS_2                             8                             145
  CLUS_3                            19                             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q13.32) MUTATED       83      1     10      2     26     14
  DEL PEAK 48(22Q13.32) WILD-TYPE     40     52     37     63     82     52
                                 vv
clus                              CLUS_7
  DEL PEAK 48(22Q13.32) MUTATED        4
  DEL PEAK 48(22Q13.32) WILD-TYPE     71
D99V8, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            83                              40
  CLUS_2                             1                              52
  CLUS_3                            10                              37
  CLUS_4                             2                              63
  CLUS_5                            26                              82
  CLUS_6                            14                              52
  CLUS_7                             4                              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED      103     14     20
  DEL PEAK 48(22Q13.32) WILD-TYPE    120    136    137
D99V9, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                           103                             120
  CLUS_2                            14                             136
  CLUS_3                            20                             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       52      0     17     68
  DEL PEAK 48(22Q13.32) WILD-TYPE    167     58    120     48
D99V10, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            52                             167
  CLUS_2                             0                              58
  CLUS_3                            17                             120
  CLUS_4                            68                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       69     28     22
  DEL PEAK 48(22Q13.32) WILD-TYPE    103     68    108
D99V11, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            69                             103
  CLUS_2                            28                              68
  CLUS_3                            22                             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       64     19     36
  DEL PEAK 48(22Q13.32) WILD-TYPE     80     96    103
D99V12, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            64                              80
  CLUS_2                            19                              96
  CLUS_3                            36                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(100) Variable = DEL PEAK 49(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(XP21.1) MUTATED        0      7      0      0
  DEL PEAK 49(XP21.1) WILD-TYPE     14     10     12     10
D100V1, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(XP21.1) MUTATED        2      5      0      0      0
  DEL PEAK 49(XP21.1) WILD-TYPE     12      4      7      7     16
D100V2, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(XP21.1) MUTATED       78      2      3      2      3
  DEL PEAK 49(XP21.1) WILD-TYPE     91    303     16      7     34
D100V3, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          78                            91
  CLUS_2                           2                           303
  CLUS_3                           3                            16
  CLUS_4                           2                             7
  CLUS_5                           3                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       54     12      9
  DEL PEAK 49(XP21.1) WILD-TYPE    111     77    162
D100V4, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          54                           111
  CLUS_2                          12                            77
  CLUS_3                           9                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(XP21.1) MUTATED        4     10      0      1      2      4
  DEL PEAK 49(XP21.1) WILD-TYPE     37     27     39     11     39     20
D100V5, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                          10                            27
  CLUS_3                           0                            39
  CLUS_4                           1                            11
  CLUS_5                           2                            39
  CLUS_6                           4                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(XP21.1) MUTATED        8      8      3      2
  DEL PEAK 49(XP21.1) WILD-TYPE     59     59     40     15
D100V6, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                           8                            59
  CLUS_3                           3                            40
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       76      5      6
  DEL PEAK 49(XP21.1) WILD-TYPE    158    148    144
D100V7, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          76                           158
  CLUS_2                           5                           148
  CLUS_3                           6                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(XP21.1) MUTATED       55      2     10      1     15      4
  DEL PEAK 49(XP21.1) WILD-TYPE     68     51     37     64     93     62
                               vv
clus                            CLUS_7
  DEL PEAK 49(XP21.1) MUTATED        0
  DEL PEAK 49(XP21.1) WILD-TYPE     75
D100V8, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          55                            68
  CLUS_2                           2                            51
  CLUS_3                          10                            37
  CLUS_4                           1                            64
  CLUS_5                          15                            93
  CLUS_6                           4                            62
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       65     11      9
  DEL PEAK 49(XP21.1) WILD-TYPE    158    139    148
D100V9, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          65                           158
  CLUS_2                          11                           139
  CLUS_3                           9                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(XP21.1) MUTATED       34      0      5     46
  DEL PEAK 49(XP21.1) WILD-TYPE    185     58    132     70
D100V10, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          34                           185
  CLUS_2                           0                            58
  CLUS_3                           5                           132
  CLUS_4                          46                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       47     17     11
  DEL PEAK 49(XP21.1) WILD-TYPE    125     79    119
D100V11, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          47                           125
  CLUS_2                          17                            79
  CLUS_3                          11                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       44      6     25
  DEL PEAK 49(XP21.1) WILD-TYPE    100    109    114
D100V12, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          44                           100
  CLUS_2                           6                           109
  CLUS_3                          25                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
