Correlation between gene mutation status and molecular subtypes
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 197 genes and 12 molecular subtypes across 248 patients, 264 significant findings detected with P value < 0.05 and Q value < 0.25.

  • PTEN mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PIK3R1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TP53 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CTCF mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FBXW7 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • KRAS mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ARHGAP35 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ARID1A mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CTNNB1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZFHX3 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TCP11L2 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • RBMX mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • NFE2L2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GNPTAB mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ARID5B mutation correlated to 'CN_CNMF'.

  • DNER mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • EP300 mutation correlated to 'CN_CNMF'.

  • KLHL8 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MORC4 mutation correlated to 'MIRSEQ_CNMF'.

  • ZNF781 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MKI67 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ING1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • INTS7 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RBBP6 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NAT1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • ADNP mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • VPS11 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • L1TD1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MARK3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CTNND1 mutation correlated to 'RPPA_CNMF'.

  • GFAP mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • PPP2R1A mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C9ORF102 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZNF471 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CDK17 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SIN3A mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RSBN1L mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CUX1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • BCOR mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CAB39L mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TAB3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • OAZ3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • AHCYL1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ATM mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MSH4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FAM65B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FN1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • JAKMIP2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • WBP4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ALPK2 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • POLE mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KIF20B mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C14ORF166B mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SLC26A8 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZNF334 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PPM1N mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TIAL1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PSMC4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MFAP5 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RAB3GAP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MSH6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BMP2K mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZNF606 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CHEK2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MGA mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • RHBDD3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TAP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • RB1 mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ATAD5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TIGD4 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PARG mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FAT1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DYM mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PSMD3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZMYM2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • INPP4B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • USP28 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • EMR1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZNF385B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RAE1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TRIM59 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZNF721 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MCTP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • FAM9A mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PER3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZRANB3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CLDN15 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TTC39C mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CCDC147 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SACS mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • MUTED mutation correlated to 'RPPA_CNMF'.

  • ZNF674 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CCDC144A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • OR8B8 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • LNX2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ATF7IP mutation correlated to 'MRNA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • IL20 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BMP5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C1ORF100 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CCDC160 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NAA15 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RNF31 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • NFE2L3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZKSCAN1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SELP mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PPIG mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • REV3L mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DEPDC1B mutation correlated to 'RPPA_CNMF'.

  • CASP8 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CACNB4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • LGMN mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TPX2 mutation correlated to 'MIRSEQ_CNMF'.

  • ZNF662 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZDBF2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CCDC146 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C7ORF60 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • ZNF649 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FILIP1 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PHKA2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • COBLL1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NOP56 mutation correlated to 'RPPA_CNMF'.

  • RBL2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ABCC6 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • CCDC104 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MLL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF709 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BRDT mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SH3BGRL mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • APAF1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NRIP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GTF2H1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ASXL2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZNF611 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SUN3 mutation correlated to 'MIRSEQ_CNMF'.

  • ZNF195 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • EXOSC9 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • LIMA1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PTPN12 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MTF2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MLL4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SESN3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 197 genes and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 264 significant findings detected.

Clinical
Features 		MRNA
CNMF 		MRNA
CHIERARCHICAL 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
PTEN 161 (65%) 87 0.00409
(0.0765) 		3e-05
(0.00222) 		1e-05
(0.000909) 		1e-05
(0.000909) 		0.0192
(0.202) 		0.0129
(0.162) 		1e-05
(0.000909) 		1e-05
(0.000909) 		1e-05
(0.000909) 		1e-05
(0.000909) 		1e-05
(0.000909) 		1e-05
(0.000909)
CTNNB1 74 (30%) 174 1e-05
(0.000909) 		2e-05
(0.00175) 		1e-05
(0.000909) 		0.0033
(0.0673) 		1e-05
(0.000909) 		0.00597
(0.0994) 		1e-05
(0.000909) 		1e-05
(0.000909) 		1e-05
(0.000909) 		1e-05
(0.000909) 		0.00024
(0.00978) 		0.00269
(0.0573)
TP53 69 (28%) 179 3e-05
(0.00222) 		1e-05
(0.000909) 		1e-05
(0.000909) 		1e-05
(0.000909) 		5e-05
(0.00328) 		0.198
(0.593) 		1e-05
(0.000909) 		1e-05
(0.000909) 		1e-05
(0.000909) 		1e-05
(0.000909) 		1e-05
(0.000909) 		1e-05
(0.000909)
CTCF 44 (18%) 204 0.149
(0.542) 		0.204
(0.599) 		4e-05
(0.0027) 		0.0665
(0.398) 		0.0624
(0.383) 		0.613
(0.934) 		0.00027
(0.0106) 		0.00103
(0.0308) 		0.0067
(0.109) 		0.00999
(0.141) 		0.0294
(0.254) 		0.0184
(0.2)
PPP2R1A 27 (11%) 221 0.0757
(0.413) 		0.0559
(0.357) 		0.0609
(0.379) 		0.0136
(0.168) 		0.192
(0.585) 		0.837
(1.00) 		0.00204
(0.0497) 		0.014
(0.169) 		0.00955
(0.136) 		0.00063
(0.021) 		0.0115
(0.156) 		0.0318
(0.266)
PIK3R1 83 (33%) 165 0.0682
(0.403) 		0.0613
(0.38) 		0.00032
(0.0118) 		6e-05
(0.00364) 		0.665
(0.967) 		0.479
(0.836) 		0.00012
(0.0063) 		0.00029
(0.0111) 		0.029
(0.253) 		0.0263
(0.242) 		0.0313
(0.266) 		0.133
(0.522)
KRAS 53 (21%) 195 0.205
(0.599) 		0.0118
(0.157) 		0.00032
(0.0118) 		0.0535
(0.348) 		0.279
(0.694) 		0.107
(0.484) 		0.201
(0.598) 		0.00013
(0.0064) 		0.0129
(0.162) 		0.011
(0.151) 		0.706
(0.98) 		0.184
(0.584)
ARID1A 83 (33%) 165 0.266
(0.686) 		0.0725
(0.412) 		1e-05
(0.000909) 		0.103
(0.473) 		0.0172
(0.194) 		0.334
(0.735) 		0.0208
(0.212) 		1e-05
(0.000909) 		0.0547
(0.352) 		0.00011
(0.00605) 		0.139
(0.527) 		0.13
(0.522)
MKI67 29 (12%) 219 0.0233
(0.225) 		0.0157
(0.179) 		0.00147
(0.0404) 		0.323
(0.73) 		0.348
(0.752) 		0.574
(0.9) 		0.0645
(0.393) 		0.00025
(0.01) 		0.132
(0.522) 		0.0429
(0.312) 		1
(1.00) 		0.0257
(0.239)
FAT1 40 (16%) 208 0.00657
(0.108) 		0.00149
(0.0405) 		0.0682
(0.403) 		0.00597
(0.0994) 		0.27
(0.69) 		0.163
(0.567) 		0.164
(0.567) 		0.00013
(0.0064) 		0.88
(1.00) 		0.00699
(0.112) 		1
(1.00) 		0.446
(0.808)
RBBP6 22 (9%) 226 0.582
(0.909) 		0.0207
(0.212) 		0.0125
(0.159) 		0.926
(1.00) 		0.81
(1.00) 		0.957
(1.00) 		0.0505
(0.337) 		0.00014
(0.00662) 		0.775
(1.00) 		0.00452
(0.0822) 		0.0339
(0.276) 		0.032
(0.267)
SIN3A 21 (8%) 227 0.0285
(0.251) 		0.33
(0.733) 		0.00379
(0.074) 		0.494
(0.849) 		0.00963
(0.136) 		9e-05
(0.00519) 		0.045
(0.317) 		0.00013
(0.0064) 		0.499
(0.854) 		0.418
(0.789)
ATM 29 (12%) 219 0.0114
(0.155) 		0.00021
(0.00871) 		0.0051
(0.09) 		0.693
(0.969) 		0.19
(0.585) 		0.33
(0.733) 		0.705
(0.979) 		0.00059
(0.0202) 		0.532
(0.88) 		0.31
(0.72) 		0.171
(0.571) 		0.124
(0.512)
ZFHX3 44 (18%) 204 0.372
(0.762) 		0.183
(0.584) 		0.0334
(0.274) 		0.0139
(0.169) 		0.324
(0.73) 		0.961
(1.00) 		0.834
(1.00) 		0.00756
(0.115) 		0.158
(0.556) 		0.0222
(0.219) 		0.596
(0.921) 		0.528
(0.879)
NFE2L2 15 (6%) 233 0.0905
(0.442) 		0.321
(0.73) 		0.0199
(0.206) 		0.492
(0.849) 		0.135
(0.522) 		0.196
(0.59) 		0.00722
(0.112) 		0.00755
(0.115) 		0.147
(0.541) 		0.0459
(0.32) 		0.369
(0.762) 		0.656
(0.961)
BCOR 30 (12%) 218 0.69
(0.969) 		0.204
(0.599) 		0.00171
(0.0449) 		0.0162
(0.184) 		0.524
(0.874) 		0.659
(0.963) 		0.0317
(0.266) 		0.00483
(0.0865) 		0.908
(1.00) 		0.236
(0.646) 		0.305
(0.718) 		0.929
(1.00)
FN1 24 (10%) 224 0.18
(0.584) 		0.0612
(0.379) 		0.0145
(0.172) 		0.412
(0.786) 		0.3
(0.711) 		0.896
(1.00) 		0.21
(0.604) 		3e-05
(0.00222) 		0.358
(0.76) 		0.0113
(0.155) 		0.313
(0.72) 		0.102
(0.471)
C14ORF166B 10 (4%) 238 0.166
(0.567) 		0.0125
(0.159) 		0.0272
(0.246) 		0.581
(0.907) 		1
(1.00) 		0.00726
(0.112) 		0.69
(0.968) 		0.127
(0.52) 		0.743
(1.00) 		0.357
(0.76)
RB1 20 (8%) 228 0.638
(0.947) 		0.00565
(0.0954) 		0.429
(0.794) 		0.255
(0.677) 		0.16
(0.559) 		0.494
(0.849) 		0.47
(0.825) 		6e-05
(0.00364) 		0.164
(0.567) 		0.0247
(0.232) 		0.806
(1.00) 		0.169
(0.57)
SACS 26 (10%) 222 0.0217
(0.216) 		0.00138
(0.0384) 		0.0352
(0.282) 		0.684
(0.968) 		0.0772
(0.413) 		0.589
(0.914) 		0.22
(0.624) 		0.00197
(0.0495) 		0.211
(0.607) 		0.0896
(0.442) 		0.876
(1.00) 		0.29
(0.697)
LNX2 14 (6%) 234 0.383
(0.762) 		0.282
(0.694) 		0.119
(0.506) 		0.00248
(0.0548) 		0.833
(1.00) 		1
(1.00) 		0.0234
(0.225) 		0.00294
(0.0619) 		0.425
(0.791) 		0.187
(0.584) 		1
(1.00) 		0.469
(0.823)
RNF31 17 (7%) 231 0.385
(0.763) 		0.0485
(0.329) 		0.311
(0.72) 		0.485
(0.844) 		0.0727
(0.412) 		0.299
(0.71) 		0.0705
(0.407) 		0.00631
(0.104) 		0.0124
(0.159) 		0.0455
(0.318) 		0.0276
(0.247) 		0.223
(0.628)
MLL2 33 (13%) 215 0.46
(0.817) 		0.0522
(0.343) 		0.0108
(0.149) 		0.0193
(0.203) 		0.0756
(0.413) 		0.0657
(0.395) 		0.819
(1.00) 		0.00532
(0.0918) 		0.57
(0.898) 		0.186
(0.584) 		1
(1.00) 		1
(1.00)
ZNF611 12 (5%) 236 1
(1.00) 		0.0773
(0.413) 		0.509
(0.861) 		0.137
(0.526) 		0.2
(0.596) 		1
(1.00) 		0.464
(0.82) 		0.00337
(0.0681) 		0.191
(0.585) 		0.0125
(0.159) 		0.174
(0.574) 		0.0103
(0.145)
LIMA1 8 (3%) 240 0.705
(0.979) 		0.388
(0.764) 		0.634
(0.947) 		0.495
(0.849) 		0.0256
(0.239) 		0.00244
(0.0548) 		0.602
(0.924) 		0.00014
(0.00662)
MLL4 30 (12%) 218 0.684
(0.968) 		0.0916
(0.442) 		0.00155
(0.0412) 		0.0394
(0.3) 		0.347
(0.752) 		0.844
(1.00) 		0.462
(0.818) 		0.00072
(0.023) 		0.157
(0.555) 		0.0125
(0.159) 		0.38
(0.762) 		0.718
(0.988)
FBXW7 39 (16%) 209 0.224
(0.628) 		0.306
(0.72) 		0.329
(0.733) 		0.0357
(0.284) 		0.11
(0.487) 		0.324
(0.73) 		0.0649
(0.394) 		0.00414
(0.0765) 		0.895
(1.00) 		0.00804
(0.121) 		0.231
(0.641) 		0.069
(0.403)
TCP11L2 14 (6%) 234 0.0422
(0.311) 		0.0185
(0.201) 		0.121
(0.506) 		0.107
(0.484) 		0.183
(0.584) 		0.342
(0.745) 		0.273
(0.694) 		8e-05
(0.00473) 		0.422
(0.791) 		0.373
(0.762) 		0.804
(1.00) 		0.813
(1.00)
RBMX 13 (5%) 235 0.192
(0.585) 		0.0919
(0.442) 		0.144
(0.539) 		0.388
(0.764) 		0.0175
(0.195) 		0.669
(0.967) 		0.399
(0.772) 		0.0369
(0.29) 		0.937
(1.00) 		0.00226
(0.0529) 		0.562
(0.893) 		1
(1.00)
DNER 18 (7%) 230 0.193
(0.585) 		0.0928
(0.442) 		0.0305
(0.262) 		0.657
(0.962) 		0.0118
(0.157) 		0.285
(0.694) 		0.867
(1.00) 		0.00028
(0.0109) 		0.738
(1) 		0.556
(0.892) 		0.864
(1.00) 		0.48
(0.837)
NAT1 7 (3%) 241 0.381
(0.762) 		0.0777
(0.413) 		0.433
(0.796) 		0.107
(0.484) 		0.0235
(0.225) 		0.408
(0.782) 		0.00223
(0.0527) 		1
(1.00) 		0.286
(0.694)
GFAP 9 (4%) 239 0.193
(0.585) 		0.446
(0.808) 		0.329
(0.733) 		0.666
(0.967) 		0.0688
(0.403) 		0.00724
(0.112) 		0.394
(0.768) 		0.0209
(0.212)
CDK17 14 (6%) 234 0.0443
(0.317) 		0.00206
(0.0497) 		0.191
(0.585) 		0.059
(0.372) 		0.805
(1.00) 		0.859
(1.00) 		0.941
(1.00) 		0.0291
(0.253) 		0.422
(0.791) 		0.604
(0.924) 		0.719
(0.988) 		0.026
(0.241)
RSBN1L 12 (5%) 236 0.133
(0.522) 		0.0919
(0.442) 		0.177
(0.576) 		0.556
(0.892) 		0.00723
(0.112) 		0.747
(1.00) 		0.297
(0.707) 		0.0045
(0.0822) 		0.365
(0.76) 		0.735
(0.998)
CUX1 23 (9%) 225 0.823
(1.00) 		0.583
(0.909) 		0.00936
(0.134) 		0.262
(0.686) 		0.953
(1.00) 		0.31
(0.72) 		0.309
(0.72) 		0.0173
(0.194) 		0.657
(0.962) 		0.553
(0.892) 		0.73
(0.997) 		0.645
(0.954)
ALPK2 19 (8%) 229 0.0305
(0.262) 		0.0152
(0.177) 		0.0318
(0.266) 		0.428
(0.793) 		0.787
(1.00) 		0.493
(0.849) 		0.246
(0.663) 		0.00358
(0.0711) 		0.597
(0.923) 		0.58
(0.906) 		0.401
(0.773) 		0.531
(0.88)
KIF20B 21 (8%) 227 0.288
(0.695) 		0.0449
(0.317) 		0.0219
(0.217) 		0.803
(1.00) 		0.503
(0.856) 		0.965
(1.00) 		0.578
(0.905) 		0.0002
(0.00844) 		0.493
(0.849) 		0.051
(0.339) 		0.27
(0.69) 		0.327
(0.733)
MFAP5 9 (4%) 239 0.371
(0.762) 		0.52
(0.872) 		0.00409
(0.0765) 		0.959
(1.00) 		0.642
(0.952) 		0.00325
(0.0673) 		0.196
(0.59) 		0.32
(0.729) 		0.0425
(0.311) 		0.181
(0.584)
MGA 26 (10%) 222 0.323
(0.73) 		0.364
(0.76) 		0.542
(0.885) 		0.875
(1.00) 		0.109
(0.486) 		0.339
(0.744) 		0.0283
(0.251) 		0.00235
(0.0539) 		0.124
(0.512) 		0.00912
(0.132) 		0.0961
(0.452) 		0.043
(0.312)
TAP1 8 (3%) 240 0.2
(0.596) 		0.779
(1.00) 		0.831
(1.00) 		0.803
(1.00) 		0.123
(0.511) 		0.00296
(0.0619) 		0.34
(0.744) 		0.0252
(0.237)
TIGD4 13 (5%) 235 0.905
(1.00) 		0.584
(0.909) 		0.45
(0.812) 		0.878
(1.00) 		0.0133
(0.166) 		0.542
(0.885) 		0.329
(0.733) 		0.00174
(0.0452) 		0.15
(0.543) 		0.542
(0.885) 		0.173
(0.573) 		0.601
(0.924)
MCTP1 13 (5%) 235 0.38
(0.762) 		0.226
(0.629) 		0.566
(0.896) 		0.666
(0.967) 		0.308
(0.72) 		0.859
(1.00) 		0.522
(0.872) 		0.0217
(0.216) 		0.186
(0.584) 		0.789
(1.00) 		0.0196
(0.205) 		0.0351
(0.282)
ATF7IP 17 (7%) 231 0.197
(0.593) 		0.023
(0.223) 		0.0817
(0.421) 		0.0926
(0.442) 		0.725
(0.992) 		0.947
(1.00) 		0.573
(0.9) 		0.0334
(0.274) 		0.775
(1.00) 		0.34
(0.744) 		0.215
(0.616) 		0.0119
(0.157)
REV3L 20 (8%) 228 0.381
(0.762) 		0.283
(0.694) 		0.0244
(0.231) 		0.332
(0.734) 		0.544
(0.886) 		1
(1.00) 		0.565
(0.896) 		0.0011
(0.0321) 		0.596
(0.921) 		0.0657
(0.395) 		0.312
(0.72) 		0.285
(0.694)
LGMN 7 (3%) 241 0.383
(0.762) 		0.078
(0.413) 		0.431
(0.794) 		0.0179
(0.198) 		0.847
(1.00) 		0.147
(0.541) 		0.00121
(0.0349) 		1
(1.00) 		0.136
(0.523)
C7ORF60 10 (4%) 238 0.382
(0.762) 		0.281
(0.694) 		0.27
(0.69) 		1
(1.00) 		0.757
(1.00) 		0.924
(1.00) 		0.24
(0.652) 		0.0215
(0.215) 		0.0207
(0.212) 		0.513
(0.865) 		0.128
(0.522) 		0.168
(0.57)
FILIP1 16 (6%) 232 0.536
(0.88) 		0.247
(0.665) 		0.302
(0.713) 		0.388
(0.764) 		0.0201
(0.208) 		0.932
(1.00) 		0.807
(1.00) 		0.00244
(0.0548) 		0.845
(1.00) 		0.12
(0.506) 		0.568
(0.898) 		1
(1.00)
ZNF709 12 (5%) 236 0.38
(0.762) 		0.282
(0.694) 		0.148
(0.541) 		0.108
(0.484) 		0.334
(0.735) 		0.635
(0.947) 		0.14
(0.53) 		0.00015
(0.00682) 		0.636
(0.947) 		0.485
(0.844) 		0.56
(0.892) 		0.0188
(0.201)
BRDT 14 (6%) 234 1
(1.00) 		0.915
(1.00) 		0.0538
(0.348) 		0.635
(0.947) 		0.0142
(0.17) 		0.973
(1.00) 		0.549
(0.892) 		0.00777
(0.118) 		0.936
(1.00) 		0.363
(0.76) 		0.184
(0.584) 		0.688
(0.968)
ASXL2 14 (6%) 234 0.38
(0.762) 		0.282
(0.694) 		0.42
(0.79) 		0.389
(0.764) 		0.731
(0.997) 		0.508
(0.861) 		0.274
(0.694) 		0.00891
(0.132) 		0.823
(1.00) 		0.363
(0.76) 		0.52
(0.872) 		0.0271
(0.246)
PTPN12 10 (4%) 238 0.0568
(0.362) 		0.152
(0.546) 		0.165
(0.567) 		0.777
(1.00) 		0.00198
(0.0495) 		0.0972
(0.455) 		0.307
(0.72) 		0.0137
(0.169) 		1
(1.00) 		0.621
(0.944)
MTF2 9 (4%) 239 0.373
(0.762) 		0.107
(0.484) 		0.282
(0.694) 		0.764
(1.00) 		0.644
(0.953) 		0.00247
(0.0548) 		0.544
(0.886) 		0.247
(0.665) 		0.56
(0.892) 		0.0196
(0.205)
ARHGAP35 36 (15%) 212 0.228
(0.635) 		0.888
(1.00) 		0.574
(0.901) 		1
(1.00) 		0.0504
(0.337) 		0.129
(0.522) 		0.225
(0.629) 		0.00707
(0.112) 		0.565
(0.896) 		0.175
(0.575) 		0.319
(0.728) 		0.207
(0.601)
GNPTAB 20 (8%) 228 0.458
(0.815) 		0.0778
(0.413) 		0.111
(0.487) 		0.114
(0.491) 		0.398
(0.772) 		0.915
(1.00) 		0.151
(0.544) 		0.00064
(0.021) 		0.831
(1.00) 		0.22
(0.624) 		0.699
(0.975) 		0.418
(0.789)
ARID5B 29 (12%) 219 0.961
(1.00) 		0.139
(0.527) 		0.00475
(0.0857) 		0.189
(0.585) 		0.236
(0.646) 		0.172
(0.572) 		0.166
(0.567) 		0.0435
(0.313) 		0.153
(0.548) 		0.11
(0.487) 		0.193
(0.585) 		0.654
(0.961)
EP300 21 (8%) 227 1
(1.00) 		0.914
(1.00) 		0.015
(0.175) 		0.229
(0.636) 		0.142
(0.535) 		0.56
(0.892) 		0.451
(0.812) 		0.0316
(0.266) 		0.653
(0.961) 		0.277
(0.694) 		0.371
(0.762) 		0.371
(0.762)
KLHL8 12 (5%) 236 0.381
(0.762) 		0.283
(0.694) 		0.147
(0.541) 		0.508
(0.861) 		0.746
(1.00) 		0.674
(0.968) 		0.235
(0.646) 		0.00499
(0.0887) 		0.462
(0.818) 		0.911
(1.00) 		0.451
(0.812) 		1
(1.00)
MORC4 20 (8%) 228 0.585
(0.91) 		0.887
(1.00) 		0.103
(0.473) 		0.442
(0.807) 		0.161
(0.561) 		0.389
(0.764) 		0.133
(0.522) 		0.0816
(0.421) 		0.0229
(0.223) 		0.126
(0.518) 		0.0344
(0.28) 		0.378
(0.762)
ZNF781 10 (4%) 238 0.267
(0.686) 		0.768
(1.00) 		0.818
(1.00) 		1
(1.00) 		0.52
(0.872) 		0.015
(0.175) 		0.53
(0.88) 		0.569
(0.898) 		1
(1.00) 		0.326
(0.732)
ING1 13 (5%) 235 0.133
(0.522) 		0.659
(0.963) 		0.359
(0.76) 		0.863
(1.00) 		0.728
(0.995) 		0.0479
(0.328) 		0.757
(1.00) 		0.0378
(0.294) 		0.0153
(0.177) 		0.287
(0.694)
INTS7 8 (3%) 240 0.381
(0.762) 		0.285
(0.694) 		0.414
(0.789) 		0.124
(0.512) 		0.837
(1.00) 		0.0752
(0.413) 		0.0052
(0.0904) 		0.342
(0.745) 		0.12
(0.506)
ADNP 14 (6%) 234 0.082
(0.421) 		0.191
(0.585) 		0.131
(0.522) 		0.879
(1.00) 		0.589
(0.914) 		0.678
(0.968) 		0.455
(0.813) 		0.00392
(0.0753) 		0.783
(1.00) 		0.51
(0.862) 		0.0414
(0.309) 		0.169
(0.57)
VPS11 12 (5%) 236 0.382
(0.762) 		0.282
(0.694) 		0.417
(0.789) 		1
(1.00) 		0.278
(0.694) 		0.399
(0.772) 		0.348
(0.752) 		0.00704
(0.112) 		0.527
(0.879) 		0.209
(0.603) 		0.237
(0.648) 		0.186
(0.584)
L1TD1 16 (6%) 232 0.0729
(0.412) 		0.148
(0.541) 		0.0736
(0.413) 		0.974
(1.00) 		0.4
(0.773) 		0.00127
(0.0362) 		0.847
(1.00) 		0.285
(0.694) 		0.748
(1.00) 		0.551
(0.892)
MARK3 11 (4%) 237 0.134
(0.522) 		0.0917
(0.442) 		0.161
(0.562) 		0.0385
(0.296) 		0.0415
(0.309) 		0.615
(0.936) 		0.546
(0.888) 		0.00055
(0.0194) 		0.399
(0.772) 		0.314
(0.72)
CTNND1 19 (8%) 229 0.287
(0.694) 		0.401
(0.773) 		0.139
(0.527) 		1
(1.00) 		0.0145
(0.172) 		0.715
(0.988) 		0.601
(0.924) 		0.0386
(0.296) 		0.91
(1.00) 		0.233
(0.645) 		0.234
(0.645) 		0.534
(0.88)
C9ORF102 16 (6%) 232 0.535
(0.88) 		0.248
(0.665) 		0.0717
(0.412) 		0.631
(0.947) 		0.802
(1.00) 		0.953
(1.00) 		0.144
(0.539) 		0.00011
(0.00605) 		0.26
(0.683) 		0.331
(0.734) 		0.186
(0.584) 		0.689
(0.968)
ZNF471 15 (6%) 233 0.686
(0.968) 		0.0908
(0.442) 		0.11
(0.487) 		0.559
(0.892) 		0.565
(0.896) 		0.843
(1.00) 		0.424
(0.791) 		6e-05
(0.00364) 		0.193
(0.585) 		0.22
(0.624) 		1
(1.00) 		0.324
(0.73)
CAB39L 8 (3%) 240 0.395
(0.768) 		0.0947
(0.448) 		0.753
(1.00) 		0.738
(1) 		0.0188
(0.201) 		0.603
(0.924) 		0.343
(0.746)
TAB3 18 (7%) 230 0.135
(0.522) 		0.0925
(0.442) 		0.045
(0.317) 		0.28
(0.694) 		0.692
(0.969) 		0.442
(0.807) 		0.0501
(0.337) 		3e-05
(0.00222) 		0.457
(0.815) 		0.39
(0.765) 		0.0718
(0.412) 		0.493
(0.849)
OAZ3 8 (3%) 240 0.371
(0.762) 		0.558
(0.892) 		0.425
(0.791) 		0.356
(0.76) 		0.0502
(0.337) 		0.00267
(0.0573) 		0.196
(0.59) 		0.502
(0.856)
AHCYL1 6 (2%) 242 0.425
(0.791) 		1
(1.00) 		0.513
(0.864) 		0.842
(1.00) 		1
(1.00) 		0.0119
(0.157) 		0.677
(0.968) 		0.744
(1.00)
MSH4 15 (6%) 233 0.684
(0.968) 		0.092
(0.442) 		0.0896
(0.442) 		0.878
(1.00) 		0.412
(0.786) 		0.727
(0.995) 		0.847
(1.00) 		0.0273
(0.246) 		0.42
(0.79) 		0.083
(0.424) 		0.185
(0.584) 		0.687
(0.968)
FAM65B 16 (6%) 232 0.0429
(0.312) 		0.324
(0.73) 		0.208
(0.602) 		0.654
(0.961) 		0.584
(0.909) 		0.00725
(0.112) 		0.944
(1.00) 		0.11
(0.487) 		0.603
(0.924) 		0.329
(0.733)
JAKMIP2 12 (5%) 236 0.38
(0.762) 		0.284
(0.694) 		0.123
(0.511) 		0.558
(0.892) 		0.0349
(0.281) 		0.767
(1.00) 		0.0691
(0.403) 		0.00068
(0.022) 		0.0873
(0.439) 		0.165
(0.567)
WBP4 8 (3%) 240 0.394
(0.768) 		0.107
(0.484) 		0.265
(0.686) 		0.912
(1.00) 		0.363
(0.76) 		0.00086
(0.0268) 		0.0771
(0.413) 		0.149
(0.542) 		0.561
(0.892) 		0.111
(0.487)
POLE 27 (11%) 221 0.735
(0.998) 		0.0617
(0.38) 		0.0374
(0.293) 		0.254
(0.676) 		0.329
(0.733) 		0.902
(1.00) 		0.903
(1.00) 		0.0131
(0.164) 		0.606
(0.926) 		0.152
(0.546) 		0.185
(0.584) 		0.534
(0.88)
SLC26A8 12 (5%) 236 0.147
(0.541) 		0.632
(0.947) 		0.108
(0.484) 		0.859
(1.00) 		0.294
(0.704) 		0.00062
(0.0209) 		0.239
(0.65) 		0.541
(0.885) 		0.362
(0.76) 		0.601
(0.924)
ZNF334 17 (7%) 231 1
(1.00) 		0.0807
(0.418) 		0.302
(0.713) 		0.377
(0.762) 		0.332
(0.735) 		0.436
(0.799) 		0.395
(0.768) 		0.0138
(0.169) 		0.948
(1.00) 		0.551
(0.892) 		0.876
(1.00) 		0.533
(0.88)
PPM1N 7 (3%) 241 0.382
(0.762) 		0.283
(0.694) 		0.502
(0.856) 		1
(1.00) 		0.569
(0.898) 		0.58
(0.906) 		0.0531
(0.347) 		0.00356
(0.0711) 		0.12
(0.506) 		0.133
(0.522)
TIAL1 10 (4%) 238 0.383
(0.762) 		0.0772
(0.413) 		0.35
(0.753) 		0.106
(0.484) 		0.445
(0.808) 		0.0507
(0.337) 		0.08
(0.418) 		0.00012
(0.0063) 		0.782
(1.00) 		0.069
(0.403) 		0.361
(0.76) 		0.324
(0.73)
PSMC4 11 (4%) 237 0.35
(0.753) 		0.444
(0.807) 		0.108
(0.484) 		0.694
(0.97) 		0.267
(0.686) 		0.00901
(0.132) 		0.72
(0.988) 		0.178
(0.578) 		0.128
(0.522) 		0.812
(1.00)
RAB3GAP1 16 (6%) 232 1
(1.00) 		0.0768
(0.413) 		0.0411
(0.309) 		0.344
(0.747) 		0.184
(0.584) 		0.819
(1.00) 		0.898
(1.00) 		0.00136
(0.0383) 		0.667
(0.967) 		0.224
(0.628) 		0.36
(0.76) 		0.0765
(0.413)
MSH6 17 (7%) 231 0.382
(0.762) 		0.282
(0.694) 		0.0703
(0.407) 		0.632
(0.947) 		0.171
(0.571) 		0.977
(1.00) 		0.338
(0.743) 		0.00016
(0.00714) 		0.493
(0.849) 		0.142
(0.533) 		0.188
(0.584) 		0.688
(0.968)
BMP2K 13 (5%) 235 0.133
(0.522) 		0.0918
(0.442) 		0.167
(0.568) 		0.263
(0.686) 		0.928
(1.00) 		1
(1.00) 		0.269
(0.69) 		0.0143
(0.17) 		0.212
(0.608) 		0.349
(0.753) 		1
(1.00) 		0.766
(1.00)
ZNF606 16 (6%) 232 0.133
(0.522) 		0.0915
(0.442) 		0.0739
(0.413) 		0.187
(0.584) 		0.747
(1.00) 		0.933
(1.00) 		0.806
(1.00) 		0.00253
(0.0554) 		0.845
(1.00) 		0.489
(0.848) 		1
(1.00) 		0.601
(0.924)
CHEK2 13 (5%) 235 0.687
(0.968) 		0.206
(0.599) 		0.455
(0.813) 		0.283
(0.694) 		0.162
(0.563) 		0.842
(1.00) 		0.185
(0.584) 		0.00329
(0.0673) 		0.19
(0.585) 		0.787
(1.00) 		0.807
(1.00) 		0.296
(0.706)
RHBDD3 4 (2%) 244 0.772
(1.00) 		0.112
(0.487) 		0.899
(1.00) 		0.628
(0.947) 		0.222
(0.627) 		0.0236
(0.225) 		0.684
(0.968) 		0.0473
(0.327)
ATAD5 17 (7%) 231 0.262
(0.686) 		0.324
(0.73) 		0.492
(0.849) 		0.652
(0.961) 		0.738
(1) 		0.0118
(0.157) 		0.687
(0.968) 		0.472
(0.826) 		0.749
(1.00) 		0.289
(0.695)
PARG 9 (4%) 239 0.115
(0.493) 		0.875
(1.00) 		0.255
(0.677) 		0.729
(0.997) 		0.201
(0.598) 		0.00875
(0.13) 		0.158
(0.556) 		0.0791
(0.416) 		0.0402
(0.305) 		0.17
(0.571)
DYM 10 (4%) 238 0.269
(0.689) 		0.281
(0.694) 		0.468
(0.823) 		0.417
(0.789) 		0.72
(0.988) 		0.00365
(0.0719) 		1
(1.00) 		0.0994
(0.46) 		0.805
(1.00) 		0.169
(0.57)
PSMD3 11 (4%) 237 0.686
(0.968) 		0.204
(0.599) 		0.35
(0.753) 		0.518
(0.87) 		0.318
(0.726) 		0.734
(0.998) 		0.471
(0.826) 		0.0172
(0.194) 		0.739
(1) 		0.972
(1.00) 		0.13
(0.522) 		0.816
(1.00)
ZMYM2 17 (7%) 231 0.381
(0.762) 		0.078
(0.413) 		0.3
(0.711) 		1
(1.00) 		0.458
(0.815) 		0.845
(1.00) 		0.262
(0.686) 		0.0187
(0.201) 		0.651
(0.961) 		0.319
(0.728) 		0.121
(0.506) 		0.0956
(0.45)
INPP4B 12 (5%) 236 0.453
(0.812) 		0.0785
(0.413) 		0.274
(0.694) 		0.0284
(0.251) 		0.206
(0.599) 		1
(1.00) 		0.00235
(0.0539) 		0.637
(0.947) 		0.862
(1.00)
USP28 10 (4%) 238 0.349
(0.753) 		0.188
(0.584) 		0.892
(1.00) 		0.684
(0.968) 		0.308
(0.72) 		0.00823
(0.123) 		1
(1.00) 		0.176
(0.575) 		0.56
(0.892) 		0.184
(0.584)
EMR1 13 (5%) 235 0.684
(0.968) 		0.0914
(0.442) 		0.112
(0.487) 		0.28
(0.694) 		0.302
(0.713) 		0.893
(1.00) 		0.599
(0.924) 		0.00204
(0.0497) 		0.701
(0.976) 		0.0825
(0.422) 		0.187
(0.584) 		0.0353
(0.282)
ZNF385B 7 (3%) 241 0.431
(0.794) 		0.733
(0.998) 		0.134
(0.522) 		0.845
(1.00) 		0.31
(0.72) 		0.0263
(0.242) 		0.678
(0.968) 		0.333
(0.735)
RAE1 11 (4%) 237 0.455
(0.813) 		0.0806
(0.418) 		0.463
(0.818) 		0.187
(0.584) 		0.266
(0.686) 		0.224
(0.628) 		0.472
(0.826) 		0.0177
(0.196) 		0.508
(0.861) 		0.409
(0.783) 		0.229
(0.636) 		0.601
(0.924)
TRIM59 9 (4%) 239 0.12
(0.506) 		0.859
(1.00) 		0.141
(0.532) 		0.327
(0.733) 		0.705
(0.979) 		0.0761
(0.413) 		0.666
(0.967) 		0.162
(0.564) 		0.187
(0.584) 		0.00518
(0.0904)
ZNF721 13 (5%) 235 1
(1.00) 		0.0779
(0.413) 		0.135
(0.522) 		0.633
(0.947) 		0.0444
(0.317) 		0.767
(1.00) 		0.522
(0.872) 		0.00558
(0.0949) 		0.459
(0.816) 		0.286
(0.694) 		0.184
(0.584) 		1
(1.00)
FAM9A 14 (6%) 234 1
(1.00) 		0.0668
(0.399) 		0.191
(0.585) 		0.533
(0.88) 		0.07
(0.407) 		0.0702
(0.407) 		0.74
(1.00) 		0.0312
(0.266) 		0.123
(0.511) 		0.0215
(0.215)
PER3 12 (5%) 236 0.149
(0.542) 		0.135
(0.522) 		0.192
(0.585) 		0.765
(1.00) 		0.0671
(0.399) 		0.00073
(0.023) 		0.686
(0.968) 		0.0841
(0.428) 		0.131
(0.522) 		0.169
(0.57)
ZRANB3 8 (3%) 240 0.687
(0.968) 		0.204
(0.599) 		0.392
(0.767) 		0.443
(0.807) 		0.556
(0.892) 		0.0742
(0.413) 		0.00261
(0.0566) 		0.0541
(0.349) 		0.276
(0.694)
CLDN15 5 (2%) 243 0.689
(0.968) 		0.308
(0.72) 		0.655
(0.961) 		0.695
(0.97) 		0.131
(0.522) 		0.00015
(0.00682) 		0.324
(0.73) 		0.528
(0.879) 		0.745
(1.00) 		0.11
(0.487)
TTC39C 7 (3%) 241 0.689
(0.968) 		0.205
(0.599) 		0.434
(0.796) 		0.0867
(0.437) 		0.553
(0.892) 		0.407
(0.781) 		0.0271
(0.246) 		0.289
(0.695) 		0.331
(0.734)
CCDC147 15 (6%) 233 0.681
(0.968) 		0.0927
(0.442) 		0.11
(0.487) 		0.658
(0.963) 		0.154
(0.548) 		0.922
(1.00) 		0.536
(0.88) 		0.0002
(0.00844) 		0.655
(0.961) 		0.235
(0.646) 		0.36
(0.76) 		0.0768
(0.413)
MUTED 7 (3%) 241 0.431
(0.794) 		0.628
(0.947) 		0.0274
(0.247) 		0.0801
(0.418) 		0.709
(0.983) 		0.115
(0.493) 		0.449
(0.811) 		0.422
(0.791)
ZNF674 14 (6%) 234 0.418
(0.789) 		0.876
(1.00) 		0.069
(0.403) 		0.848
(1.00) 		0.199
(0.595) 		0.00199
(0.0495) 		0.147
(0.541) 		0.376
(0.762) 		0.185
(0.584) 		0.686
(0.968)
CCDC144A 18 (7%) 230 0.808
(1.00) 		0.0918
(0.442) 		0.555
(0.892) 		0.426
(0.791) 		0.171
(0.571) 		0.67
(0.968) 		0.589
(0.914) 		0.00402
(0.0765) 		0.462
(0.818) 		0.638
(0.947) 		0.866
(1.00) 		0.286
(0.694)
OR8B8 7 (3%) 241 0.187
(0.584) 		0.778
(1.00) 		0.348
(0.752) 		0.934
(1.00) 		0.31
(0.72) 		0.00538
(0.0922) 		0.387
(0.764) 		0.426
(0.791)
IL20 7 (3%) 241 0.135
(0.522) 		0.0942
(0.446) 		0.43
(0.794) 		0.245
(0.662) 		0.933
(1.00) 		0.635
(0.947) 		0.0186
(0.201) 		0.29
(0.697) 		0.364
(0.76)
BMP5 13 (5%) 235 0.811
(1.00) 		0.091
(0.442) 		0.314
(0.72) 		1
(1.00) 		0.219
(0.624) 		0.301
(0.712) 		0.879
(1.00) 		0.0147
(0.173) 		0.569
(0.898) 		0.836
(1.00) 		0.625
(0.946) 		0.816
(1.00)
C1ORF100 9 (4%) 239 0.383
(0.762) 		0.282
(0.694) 		0.0618
(0.38) 		1
(1.00) 		0.718
(0.988) 		0.262
(0.686) 		0.248
(0.665) 		0.0142
(0.17) 		0.0919
(0.442) 		0.566
(0.896)
CCDC160 11 (4%) 237 0.685
(0.968) 		0.204
(0.599) 		0.274
(0.694) 		1
(1.00) 		0.815
(1.00) 		0.72
(0.988) 		0.546
(0.888) 		0.0271
(0.246) 		0.92
(1.00) 		0.165
(0.567) 		0.561
(0.892) 		0.357
(0.76)
NAA15 14 (6%) 234 0.535
(0.88) 		0.249
(0.665) 		0.656
(0.961) 		0.098
(0.457) 		0.153
(0.548) 		0.4
(0.773) 		0.114
(0.49) 		0.00102
(0.0308) 		0.184
(0.584) 		0.37
(0.762) 		0.192
(0.585) 		0.371
(0.762)
NFE2L3 12 (5%) 236 1
(1.00) 		0.0323
(0.268) 		0.39
(0.765) 		0.856
(1.00) 		0.0484
(0.329) 		0.0192
(0.202) 		0.462
(0.818) 		0.311
(0.72) 		0.214
(0.614) 		0.224
(0.628)
ZKSCAN1 7 (3%) 241 0.501
(0.855) 		0.444
(0.807) 		0.154
(0.548) 		0.312
(0.72) 		0.41
(0.785) 		0.0239
(0.227) 		0.718
(0.988) 		0.276
(0.694) 		0.805
(1.00) 		0.813
(1.00)
SELP 9 (4%) 239 0.382
(0.762) 		0.282
(0.694) 		0.243
(0.659) 		0.264
(0.686) 		1
(1.00) 		0.367
(0.762) 		0.0104
(0.145) 		0.224
(0.628) 		0.236
(0.646)
PPIG 16 (6%) 232 0.192
(0.585) 		0.092
(0.442) 		0.041
(0.309) 		1
(1.00) 		0.731
(0.997) 		0.956
(1.00) 		0.148
(0.541) 		0.00213
(0.0509) 		0.0923
(0.442) 		0.244
(0.661) 		0.234
(0.645) 		0.0554
(0.356)
DEPDC1B 11 (4%) 237 0.688
(0.968) 		0.204
(0.599) 		0.176
(0.575) 		0.669
(0.967) 		0.0229
(0.223) 		0.407
(0.781) 		0.287
(0.694) 		0.101
(0.466) 		0.917
(1.00) 		0.146
(0.541) 		0.119
(0.506) 		0.446
(0.808)
CASP8 17 (7%) 231 0.382
(0.762) 		0.0785
(0.413) 		0.263
(0.686) 		0.253
(0.674) 		0.154
(0.548) 		1
(1.00) 		0.606
(0.926) 		0.00383
(0.0742) 		0.316
(0.724) 		0.745
(1.00) 		1
(1.00) 		0.63
(0.947)
CACNB4 10 (4%) 238 0.0592
(0.372) 		0.555
(0.892) 		0.671
(0.968) 		1
(1.00) 		0.433
(0.796) 		0.0121
(0.158) 		0.173
(0.573) 		0.412
(0.786) 		0.388
(0.764) 		0.112
(0.487)
TPX2 6 (2%) 242 0.424
(0.791) 		0.825
(1.00) 		0.425
(0.791) 		0.355
(0.76) 		0.0855
(0.432) 		0.159
(0.558) 		0.0181
(0.199) 		0.135
(0.522) 		0.0421
(0.311) 		0.183
(0.584)
ZNF662 13 (5%) 235 0.38
(0.762) 		0.281
(0.694) 		0.452
(0.812) 		0.138
(0.527) 		0.782
(1.00) 		0.455
(0.813) 		0.0654
(0.395) 		3e-05
(0.00222) 		0.572
(0.899) 		0.257
(0.678) 		0.358
(0.76) 		0.0779
(0.413)
ZDBF2 18 (7%) 230 0.372
(0.762) 		0.11
(0.487) 		0.0579
(0.367) 		0.781
(1.00) 		0.558
(0.892) 		0.963
(1.00) 		0.0706
(0.407) 		4e-05
(0.0027) 		0.197
(0.593) 		0.074
(0.413) 		0.747
(1.00) 		0.323
(0.73)
CCDC146 14 (6%) 234 0.906
(1.00) 		0.0474
(0.327) 		0.119
(0.506) 		0.631
(0.947) 		0.119
(0.506) 		0.849
(1.00) 		0.546
(0.888) 		0.00093
(0.0286) 		0.298
(0.708) 		0.374
(0.762) 		0.175
(0.575) 		0.326
(0.732)
ZNF649 14 (6%) 234 0.535
(0.88) 		0.247
(0.665) 		0.0898
(0.442) 		1
(1.00) 		0.756
(1.00) 		1
(1.00) 		0.944
(1.00) 		0.0154
(0.177) 		0.14
(0.53) 		0.779
(1.00) 		0.363
(0.76) 		0.603
(0.924)
PHKA2 16 (6%) 232 1
(1.00) 		0.674
(0.968) 		0.09
(0.442) 		0.189
(0.585) 		0.81
(1.00) 		0.403
(0.775) 		0.0841
(0.428) 		0.00057
(0.0198) 		0.199
(0.594) 		0.0326
(0.269) 		0.267
(0.686) 		0.0355
(0.282)
COBLL1 15 (6%) 233 0.536
(0.88) 		0.249
(0.665) 		0.467
(0.823) 		0.14
(0.529) 		0.801
(1.00) 		0.953
(1.00) 		0.209
(0.603) 		0.00105
(0.031) 		0.424
(0.791) 		0.307
(0.72) 		0.359
(0.76) 		0.605
(0.926)
NOP56 11 (4%) 237 0.0632
(0.387) 		0.632
(0.947) 		0.0093
(0.134) 		0.458
(0.815) 		0.265
(0.686) 		0.125
(0.514) 		0.738
(1) 		0.0975
(0.456) 		0.129
(0.522) 		0.815
(1.00)
RBL2 12 (5%) 236 0.534
(0.88) 		0.247
(0.665) 		0.148
(0.541) 		0.859
(1.00) 		0.54
(0.884) 		0.576
(0.902) 		0.348
(0.753) 		0.00176
(0.0452) 		0.15
(0.543) 		0.285
(0.694) 		0.494
(0.849) 		1
(1.00)
ABCC6 12 (5%) 236 0.687
(0.968) 		0.00911
(0.132) 		0.145
(0.541) 		0.861
(1.00) 		0.0763
(0.413) 		0.533
(0.88) 		0.61
(0.931) 		0.357
(0.76) 		0.315
(0.723) 		0.716
(0.988) 		0.561
(0.892) 		0.623
(0.944)
CCDC104 10 (4%) 238 0.167
(0.568) 		0.15
(0.543) 		0.077
(0.413) 		0.636
(0.947) 		0.923
(1.00) 		0.0209
(0.212) 		0.762
(1.00) 		0.556
(0.892) 		1
(1.00) 		0.622
(0.944)
SH3BGRL 6 (2%) 242 0.157
(0.556) 		0.112
(0.487) 		0.696
(0.971) 		0.696
(0.972) 		0.023
(0.223) 		0.0671
(0.399) 		0.316
(0.724)
APAF1 13 (5%) 235 0.194
(0.586) 		0.0931
(0.442) 		0.116
(0.497) 		0.113
(0.487) 		0.632
(0.947) 		0.94
(1.00) 		0.0452
(0.317) 		0.00039
(0.0142) 		0.192
(0.585) 		0.0596
(0.373)
NRIP1 13 (5%) 235 0.378
(0.762) 		0.0785
(0.413) 		0.453
(0.812) 		0.713
(0.988) 		0.416
(0.789) 		0.859
(1.00) 		0.333
(0.735) 		0.00042
(0.015) 		0.148
(0.541) 		0.133
(0.522) 		0.357
(0.76) 		0.604
(0.924)
GTF2H1 8 (3%) 240 0.688
(0.968) 		0.205
(0.599) 		0.416
(0.789) 		0.779
(1.00) 		0.882
(1.00) 		0.234
(0.646) 		0.258
(0.678) 		0.00019
(0.00832) 		1
(1.00) 		0.6
(0.924)
SUN3 6 (2%) 242 0.537
(0.88) 		0.334
(0.735) 		0.934
(1.00) 		0.127
(0.52) 		0.0723
(0.412) 		0.0183
(0.2) 		0.135
(0.522)
ZNF195 11 (4%) 237 0.16
(0.559) 		0.19
(0.585) 		0.0988
(0.458) 		1
(1.00) 		0.21
(0.604) 		4e-05
(0.0027) 		0.513
(0.864) 		0.31
(0.72)
EXOSC9 10 (4%) 238 0.688
(0.968) 		0.204
(0.599) 		0.351
(0.754) 		0.113
(0.487) 		0.559
(0.892) 		0.514
(0.866) 		0.525
(0.875) 		0.00152
(0.0408) 		0.76
(1.00) 		0.726
(0.994)
SESN3 13 (5%) 235 0.537
(0.88) 		0.249
(0.665) 		0.166
(0.567) 		0.263
(0.686) 		0.57
(0.898) 		0.559
(0.892) 		0.682
(0.968) 		0.00411
(0.0765) 		0.291
(0.697) 		0.613
(0.934) 		0.37
(0.762) 		0.491
(0.849)
PIK3CA 132 (53%) 116 0.86
(1.00) 		0.378
(0.762) 		0.573
(0.9) 		0.748
(1.00) 		0.38
(0.762) 		0.659
(0.963) 		0.745
(1.00) 		0.553
(0.892) 		0.219
(0.624) 		0.454
(0.813) 		0.347
(0.752) 		0.638
(0.947)
FGFR2 31 (12%) 217 0.384
(0.762) 		0.366
(0.761) 		0.272
(0.692) 		1
(1.00) 		0.979
(1.00) 		0.521
(0.872) 		1
(1.00) 		0.0766
(0.413) 		0.803
(1.00) 		0.104
(0.476) 		0.29
(0.697) 		1
(1.00)
SPOP 21 (8%) 227 0.351
(0.754) 		0.677
(0.968) 		0.569
(0.898) 		0.421
(0.791) 		0.828
(1.00) 		0.881
(1.00) 		0.43
(0.794) 		0.109
(0.486) 		0.847
(1.00) 		0.364
(0.76) 		0.0796
(0.417) 		0.418
(0.789)
SOX17 7 (3%) 241 0.0503
(0.337) 		0.139
(0.527) 		0.428
(0.793) 		0.162
(0.563) 		0.202
(0.598) 		0.488
(0.848) 		0.798
(1.00) 		0.483
(0.842)
CCND1 14 (6%) 234 0.63
(0.947) 		0.809
(1.00) 		0.13
(0.522) 		0.264
(0.686) 		0.625
(0.946) 		0.965
(1.00) 		0.479
(0.836) 		0.0471
(0.327) 		0.081
(0.419) 		0.593
(0.919) 		0.495
(0.849) 		0.382
(0.762)
MAX 11 (4%) 237 0.158
(0.556) 		0.492
(0.849) 		0.664
(0.967) 		0.923
(1.00) 		0.472
(0.826) 		0.0536
(0.348) 		1
(1.00) 		0.922
(1.00) 		0.359
(0.76) 		0.447
(0.808)
SGK1 15 (6%) 233 0.382
(0.762) 		0.282
(0.694) 		0.165
(0.567) 		0.734
(0.998) 		0.171
(0.571) 		1
(1.00) 		0.312
(0.72) 		0.271
(0.69) 		0.328
(0.733) 		0.34
(0.744) 		0.558
(0.892) 		0.783
(1.00)
NRAS 9 (4%) 239 0.749
(1.00) 		0.26
(0.683) 		0.201
(0.598) 		0.643
(0.952) 		0.865
(1.00) 		1
(1.00) 		0.905
(1.00)
CCDC6 6 (2%) 242 0.863
(1.00) 		0.517
(0.869) 		0.2
(0.596) 		0.42
(0.79) 		0.452
(0.812) 		0.241
(0.655) 		0.0805
(0.418) 		0.572
(0.899) 		0.566
(0.896) 		0.445
(0.808)
EIF2S2 9 (4%) 239 0.354
(0.76) 		0.735
(0.998) 		0.887
(1.00) 		0.612
(0.933) 		0.253
(0.674) 		0.375
(0.762) 		0.762
(1.00) 		0.515
(0.866) 		0.808
(1.00) 		0.817
(1.00)
SOS1 12 (5%) 236 0.63
(0.947) 		0.809
(1.00) 		0.0739
(0.413) 		0.558
(0.892) 		0.221
(0.625) 		0.257
(0.678) 		0.863
(1.00) 		0.0386
(0.296) 		0.225
(0.629) 		0.654
(0.961) 		0.131
(0.522) 		0.167
(0.568)
EIF4A2 7 (3%) 241 0.43
(0.794) 		0.779
(1.00) 		0.711
(0.985) 		0.531
(0.88) 		0.0521
(0.343) 		0.149
(0.542) 		0.342
(0.745) 		0.12
(0.506) 		0.394
(0.768) 		1
(1.00)
ZNF485 9 (4%) 239 1
(1.00) 		0.0784
(0.413) 		0.357
(0.76) 		1
(1.00) 		0.357
(0.76) 		0.692
(0.969) 		0.643
(0.952) 		0.412
(0.786) 		0.128
(0.522) 		0.294
(0.703)
WDR45 11 (4%) 237 0.657
(0.962) 		0.58
(0.906) 		0.0382
(0.295) 		0.766
(1.00) 		0.862
(1.00) 		0.239
(0.65) 		0.225
(0.629) 		0.204
(0.599) 		0.187
(0.584) 		0.295
(0.705)
RASA1 22 (9%) 226 0.386
(0.764) 		0.365
(0.76) 		0.0821
(0.421) 		0.427
(0.792) 		0.418
(0.789) 		0.811
(1.00) 		0.755
(1.00) 		0.175
(0.575) 		0.462
(0.818) 		0.625
(0.946) 		0.405
(0.779) 		0.168
(0.57)
RRAS2 4 (2%) 244 0.0984
(0.457) 		0.234
(0.645) 		0.256
(0.677) 		0.171
(0.571) 		0.216
(0.616) 		0.392
(0.767) 		0.917
(1.00)
FCN1 8 (3%) 240 0.394
(0.768) 		0.443
(0.807) 		0.444
(0.807) 		0.637
(0.947) 		0.364
(0.76) 		0.209
(0.603) 		1
(1.00) 		0.763
(1.00) 		0.124
(0.512) 		0.112
(0.487)
ZNF263 7 (3%) 241 0.501
(0.855) 		0.386
(0.764) 		0.766
(1.00) 		0.899
(1.00) 		0.511
(0.863) 		0.0337
(0.275) 		0.207
(0.601) 		0.715
(0.988) 		0.806
(1.00) 		0.0346
(0.28)
SLC1A3 12 (5%) 236 0.662
(0.966) 		0.669
(0.967) 		0.0291
(0.253) 		0.638
(0.947) 		0.153
(0.548) 		0.032
(0.267) 		0.314
(0.72) 		0.286
(0.694) 		0.31
(0.72) 		0.423
(0.791)
ALG8 10 (4%) 238 1
(1.00) 		0.207
(0.602) 		0.777
(1.00) 		0.0379
(0.294) 		0.619
(0.94) 		0.472
(0.826) 		0.777
(1.00) 		0.334
(0.735) 		0.782
(1.00) 		0.865
(1.00)
PPM1D 11 (4%) 237 0.379
(0.762) 		0.281
(0.694) 		0.277
(0.694) 		0.152
(0.546) 		0.243
(0.659) 		0.745
(1.00) 		0.369
(0.762) 		0.0416
(0.309) 		0.722
(0.99) 		0.0286
(0.252) 		0.629
(0.947) 		0.814
(1.00)
ZNF774 10 (4%) 238 0.669
(0.967) 		0.668
(0.967) 		0.434
(0.797) 		0.923
(1.00) 		0.521
(0.872) 		0.131
(0.522) 		0.4
(0.773) 		0.311
(0.72) 		0.521
(0.872) 		0.172
(0.572)
CFP 8 (3%) 240 0.396
(0.768) 		1
(1.00) 		0.158
(0.556) 		0.509
(0.861) 		0.364
(0.76) 		0.965
(1.00) 		0.604
(0.924) 		0.762
(1.00) 		0.13
(0.522) 		0.815
(1.00)
OMA1 10 (4%) 238 0.193
(0.585) 		0.507
(0.861) 		0.238
(0.649) 		0.855
(1.00) 		1
(1.00) 		0.0528
(0.346) 		0.435
(0.797) 		0.286
(0.694) 		0.494
(0.849) 		0.291
(0.697)
TXNRD1 8 (3%) 240 0.687
(0.968) 		0.206
(0.599) 		0.705
(0.979) 		0.386
(0.764) 		0.448
(0.809) 		0.764
(1.00) 		0.365
(0.76) 		0.0361
(0.285) 		0.0559
(0.357) 		0.171
(0.571)
MECOM 12 (5%) 236 0.537
(0.88) 		0.0483
(0.329) 		0.148
(0.541) 		0.555
(0.892) 		0.5
(0.855) 		0.0951
(0.449) 		0.439
(0.803) 		0.257
(0.678) 		0.313
(0.72) 		0.655
(0.961) 		1
(1.00) 		1
(1.00)
SLC44A3 6 (2%) 242 0.426
(0.791) 		0.687
(0.968) 		0.693
(0.97) 		0.469
(0.823) 		1
(1.00) 		0.251
(0.67) 		0.676
(0.968) 		0.274
(0.694)
TMEM62 9 (4%) 239 0.372
(0.762) 		0.778
(1.00) 		0.589
(0.914) 		0.802
(1.00) 		0.144
(0.539) 		0.0452
(0.317) 		0.665
(0.967) 		0.236
(0.646)
C3AR1 8 (3%) 240 0.382
(0.762) 		0.283
(0.694) 		0.415
(0.789) 		0.172
(0.572) 		0.164
(0.567) 		0.494
(0.849) 		0.085
(0.431) 		0.631
(0.947) 		0.717
(0.988)
PKD2 8 (3%) 240 1
(1.00) 		0.913
(1.00) 		0.103
(0.473) 		0.188
(0.584) 		0.869
(1.00) 		1
(1.00) 		0.298
(0.709) 		0.796
(1.00) 		0.308
(0.72)
OR52I2 8 (3%) 240 0.687
(0.968) 		0.533
(0.88) 		0.704
(0.979) 		0.038
(0.295) 		0.715
(0.988) 		0.504
(0.858) 		0.158
(0.556) 		0.0984
(0.457) 		0.715
(0.988) 		0.666
(0.967) 		1
(1.00) 		1
(1.00)
CDKL1 7 (3%) 241 0.433
(0.796) 		0.685
(0.968) 		0.401
(0.773) 		0.869
(1.00) 		0.801
(1.00) 		0.224
(0.628) 		0.676
(0.968) 		0.483
(0.842) 		0.492
(0.849) 		0.297
(0.707)
ERBB3 17 (7%) 231 0.176
(0.575) 		0.487
(0.847) 		0.442
(0.807) 		0.882
(1.00) 		0.209
(0.603) 		0.276
(0.694) 		0.952
(1.00) 		0.822
(1.00) 		0.663
(0.967) 		0.553
(0.892)
GPRASP1 21 (8%) 227 0.287
(0.694) 		0.0446
(0.317) 		0.113
(0.487) 		0.629
(0.947) 		0.34
(0.744) 		1
(1.00) 		1
(1.00) 		0.112
(0.487) 		0.468
(0.823) 		0.423
(0.791) 		0.748
(1.00) 		1
(1.00)
CTNNA1 13 (5%) 235 0.566
(0.896) 		0.669
(0.967) 		0.192
(0.585) 		0.9
(1.00) 		0.375
(0.762) 		0.0284
(0.251) 		0.494
(0.849) 		0.807
(1.00) 		0.36
(0.76) 		0.6
(0.924)
MRPL47 6 (2%) 242 0.687
(0.968) 		0.53
(0.88) 		1
(1.00) 		0.779
(1.00) 		0.584
(0.909) 		0.805
(1.00) 		0.531
(0.88) 		0.0738
(0.413) 		1
(1.00) 		0.701
(0.976)
BHLHB9 8 (3%) 240 0.393
(0.768) 		1
(1.00) 		0.961
(1.00) 		0.507
(0.861) 		0.123
(0.511) 		0.0363
(0.286) 		0.281
(0.694) 		0.154
(0.548)
C22ORF25 6 (2%) 242 0.533
(0.88) 		1
(1.00) 		0.612
(0.933) 		0.0403
(0.305) 		0.0657
(0.395) 		0.064
(0.391) 		0.852
(1.00)
GALNT7 11 (4%) 237 0.684
(0.968) 		0.0924
(0.442) 		0.652
(0.961) 		0.779
(1.00) 		0.718
(0.988) 		0.73
(0.997) 		0.368
(0.762) 		0.0515
(0.34) 		0.686
(0.968) 		0.0726
(0.412) 		1
(1.00) 		0.111
(0.487)
EPS8 12 (5%) 236 0.651
(0.961) 		0.317
(0.725) 		0.81
(1.00) 		0.965
(1.00) 		0.467
(0.823) 		0.169
(0.57) 		0.457
(0.815) 		0.874
(1.00) 		0.309
(0.72) 		0.37
(0.762)
TGOLN2 3 (1%) 245 0.723
(0.991) 		0.312
(0.72) 		0.595
(0.921) 		0.212
(0.609) 		0.138
(0.526) 		1
(1.00) 		1
(1.00)
C14ORF118 15 (6%) 233 0.682
(0.968) 		0.093
(0.442) 		0.0569
(0.362) 		0.62
(0.943) 		0.0855
(0.432) 		0.266
(0.686) 		0.802
(1.00) 		0.123
(0.511) 		0.327
(0.733) 		0.655
(0.961) 		0.576
(0.902) 		1
(1.00)
SLC34A3 6 (2%) 242 0.426
(0.791) 		0.443
(0.807) 		0.458
(0.815) 		1
(1.00) 		0.452
(0.812) 		0.0418
(0.31) 		0.387
(0.764) 		0.276
(0.694) 		0.359
(0.76) 		0.0769
(0.413)
SFRP4 8 (3%) 240 0.383
(0.762) 		0.283
(0.694) 		0.199
(0.594) 		0.46
(0.817) 		0.449
(0.811) 		0.356
(0.76) 		0.176
(0.576) 		0.0603
(0.376) 		0.121
(0.506) 		0.952
(1.00)
RASSF9 9 (4%) 239 0.391
(0.766) 		0.777
(1.00) 		0.717
(0.988) 		1
(1.00) 		0.643
(0.952) 		0.0493
(0.334) 		0.54
(0.884) 		0.925
(1.00)
NIPA2 8 (3%) 240 0.415
(0.789) 		0.827
(1.00) 		0.257
(0.678) 		0.867
(1.00) 		1
(1.00) 		0.0413
(0.309) 		0.905
(1.00) 		0.89
(1.00) 		0.395
(0.768) 		0.469
(0.823)
AGPAT9 8 (3%) 240 0.415
(0.789) 		0.112
(0.487) 		0.132
(0.522) 		0.412
(0.786) 		0.0305
(0.262) 		0.127
(0.52) 		1
(1.00) 		0.255
(0.677)
SSH2 12 (5%) 236 0.683
(0.968) 		0.0914
(0.442) 		0.145
(0.541) 		0.828
(1.00) 		0.227
(0.631) 		0.86
(1.00) 		0.932
(1.00) 		0.344
(0.748) 		1
(1.00) 		0.718
(0.988) 		0.804
(1.00) 		0.814
(1.00)
MLH3 17 (7%) 231 0.904
(1.00) 		0.0473
(0.327) 		0.0589
(0.372) 		1
(1.00) 		0.223
(0.628) 		1
(1.00) 		0.906
(1.00) 		0.0513
(0.34) 		0.691
(0.969) 		0.743
(1.00) 		0.749
(1.00) 		1
(1.00)
CCDC150 12 (5%) 236 0.176
(0.575) 		0.256
(0.677) 		0.221
(0.626) 		0.153
(0.548) 		0.762
(1.00) 		0.072
(0.412) 		0.928
(1.00) 		0.417
(0.789) 		1
(1.00) 		0.55
(0.892)
NT5C3 7 (3%) 241 0.685
(0.968) 		0.0928
(0.442) 		0.5
(0.855) 		0.331
(0.734) 		0.933
(1.00) 		0.634
(0.947) 		0.0435
(0.313) 		0.0658
(0.395) 		0.136
(0.523)
KANK4 11 (4%) 237 0.0594
(0.372) 		0.388
(0.764) 		0.0425
(0.311) 		0.183
(0.584) 		0.284
(0.694) 		0.134
(0.522) 		0.921
(1.00) 		0.177
(0.578) 		1
(1.00) 		0.555
(0.892)
MFN2 9 (4%) 239 0.37
(0.762) 		0.768
(1.00) 		0.633
(0.947) 		0.508
(0.861) 		0.775
(1.00) 		0.172
(0.572) 		0.0475
(0.327) 		0.136
(0.523) 		0.183
(0.584) 		0.688
(0.968)
C1ORF101 12 (5%) 236 0.633
(0.947) 		0.324
(0.73) 		0.148
(0.541) 		0.824
(1.00) 		0.186
(0.584) 		0.923
(1.00) 		0.497
(0.852) 		0.709
(0.983) 		0.244
(0.66) 		0.972
(1.00) 		0.0436
(0.313) 		0.183
(0.584)
MBOAT2 7 (3%) 241 0.791
(1.00) 		0.733
(0.998) 		0.587
(0.912) 		0.264
(0.686) 		0.267
(0.686) 		0.267
(0.686) 		1
(1.00) 		0.508
(0.861) 		1
(1.00) 		0.687
(0.968)
CHD4 35 (14%) 213 0.0965
(0.452) 		0.339
(0.743) 		1
(1.00) 		0.742
(1.00) 		0.984
(1.00) 		0.373
(0.762) 		0.363
(0.76) 		0.33
(0.733) 		0.55
(0.892) 		0.862
(1.00) 		0.801
(1.00) 		0.735
(0.998)
'PTEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00409 (Fisher's exact test), Q value = 0.076

Table S1.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PTEN MUTATED 11 6 9 7
PTEN WILD-TYPE 1 12 2 3

Figure S1.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S2.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PTEN MUTATED 8 0 6 7 12
PTEN WILD-TYPE 4 10 1 0 3

Figure S2.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S3.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PTEN MUTATED 4 126 6 3 17
PTEN WILD-TYPE 52 26 5 2 1

Figure S3.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S4.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PTEN MUTATED 6 29 46
PTEN WILD-TYPE 37 10 7

Figure S4.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.2

Table S5.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PTEN MUTATED 26 21 33 9 29 14
PTEN WILD-TYPE 13 15 4 1 11 10

Figure S5.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.16

Table S6.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PTEN MUTATED 42 44 36 10
PTEN WILD-TYPE 23 20 4 7

Figure S6.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S7.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PTEN MUTATED 17 68 75
PTEN WILD-TYPE 62 17 8

Figure S7.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S8.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PTEN MUTATED 3 33 5 28 21 29 41
PTEN WILD-TYPE 41 8 12 5 14 2 5

Figure S8.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S9.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PTEN MUTATED 20 56 82
PTEN WILD-TYPE 49 23 10

Figure S9.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S10.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PTEN MUTATED 49 31 72 6
PTEN WILD-TYPE 24 12 7 39

Figure S10.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S11.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
PTEN MUTATED 7 8 52
PTEN WILD-TYPE 22 11 12

Figure S11.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S12.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
PTEN MUTATED 10 43 14
PTEN WILD-TYPE 23 5 17

Figure S12.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.4

Table S13.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PIK3R1 MUTATED 5 2 6 3
PIK3R1 WILD-TYPE 7 16 5 7
'PIK3R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 0.38

Table S14.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PIK3R1 MUTATED 3 0 4 3 6
PIK3R1 WILD-TYPE 9 10 3 4 9
'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S15.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PIK3R1 MUTATED 6 62 4 2 8
PIK3R1 WILD-TYPE 50 90 7 3 10

Figure S13.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0036

Table S16.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PIK3R1 MUTATED 5 11 29
PIK3R1 WILD-TYPE 38 28 24

Figure S14.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PIK3R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.97

Table S17.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PIK3R1 MUTATED 13 11 18 3 16 9
PIK3R1 WILD-TYPE 26 25 19 7 24 15
'PIK3R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.84

Table S18.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PIK3R1 MUTATED 21 24 19 6
PIK3R1 WILD-TYPE 44 40 21 11
'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0063

Table S19.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PIK3R1 MUTATED 12 37 34
PIK3R1 WILD-TYPE 67 48 49

Figure S15.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S20.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PIK3R1 MUTATED 3 17 3 15 11 14 20
PIK3R1 WILD-TYPE 41 24 14 18 24 17 26

Figure S16.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.25

Table S21.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PIK3R1 MUTATED 15 28 38
PIK3R1 WILD-TYPE 54 51 54

Figure S17.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.24

Table S22.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PIK3R1 MUTATED 26 16 32 7
PIK3R1 WILD-TYPE 47 27 47 38

Figure S18.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.27

Table S23.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
PIK3R1 MUTATED 4 5 26
PIK3R1 WILD-TYPE 25 14 38

Figure S19.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.52

Table S24.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
PIK3R1 MUTATED 6 19 10
PIK3R1 WILD-TYPE 27 29 21
'TP53 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S25.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TP53 MUTATED 2 13 1 0
TP53 WILD-TYPE 10 5 10 10

Figure S20.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TP53 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S26.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TP53 MUTATED 4 10 1 1 0
TP53 WILD-TYPE 8 0 6 6 15

Figure S21.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S27.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TP53 MUTATED 52 10 3 0 3
TP53 WILD-TYPE 4 142 8 5 15

Figure S22.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S28.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TP53 MUTATED 32 3 5
TP53 WILD-TYPE 11 36 48

Figure S23.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0033

Table S29.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TP53 MUTATED 9 19 4 2 2 8
TP53 WILD-TYPE 30 17 33 8 38 16

Figure S24.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.59

Table S30.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TP53 MUTATED 21 13 6 4
TP53 WILD-TYPE 44 51 34 13
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S31.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TP53 MUTATED 58 7 4
TP53 WILD-TYPE 21 78 79

Figure S25.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S32.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TP53 MUTATED 38 0 11 4 12 3 1
TP53 WILD-TYPE 6 41 6 29 23 28 45

Figure S26.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S33.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TP53 MUTATED 46 11 7
TP53 WILD-TYPE 23 68 85

Figure S27.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S34.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TP53 MUTATED 24 1 4 35
TP53 WILD-TYPE 49 42 75 10

Figure S28.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S35.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
TP53 MUTATED 21 6 9
TP53 WILD-TYPE 8 13 55

Figure S29.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S36.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
TP53 MUTATED 23 3 10
TP53 WILD-TYPE 10 45 21

Figure S30.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.54

Table S37.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CTCF MUTATED 3 1 4 1
CTCF WILD-TYPE 9 17 7 9
'CTCF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.6

Table S38.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CTCF MUTATED 3 0 3 1 2
CTCF WILD-TYPE 9 10 4 6 13
'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S39.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CTCF MUTATED 0 38 0 0 3
CTCF WILD-TYPE 56 114 11 5 15

Figure S31.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0665 (Fisher's exact test), Q value = 0.4

Table S40.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CTCF MUTATED 3 10 8
CTCF WILD-TYPE 40 29 45
'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.38

Table S41.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CTCF MUTATED 9 3 5 5 9 3
CTCF WILD-TYPE 30 33 32 5 31 21
'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.93

Table S42.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CTCF MUTATED 12 10 10 2
CTCF WILD-TYPE 53 54 30 15
'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.011

Table S43.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CTCF MUTATED 4 17 23
CTCF WILD-TYPE 75 68 60

Figure S32.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00103 (Fisher's exact test), Q value = 0.031

Table S44.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CTCF MUTATED 0 8 3 7 4 8 14
CTCF WILD-TYPE 44 33 14 26 31 23 32

Figure S33.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0067 (Fisher's exact test), Q value = 0.11

Table S45.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CTCF MUTATED 5 15 24
CTCF WILD-TYPE 64 64 68

Figure S34.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00999 (Fisher's exact test), Q value = 0.14

Table S46.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CTCF MUTATED 9 11 21 3
CTCF WILD-TYPE 64 32 58 42

Figure S35.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.25

Table S47.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CTCF MUTATED 0 3 11
CTCF WILD-TYPE 29 16 53

Figure S36.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.2

Table S48.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CTCF MUTATED 1 11 2
CTCF WILD-TYPE 32 37 29

Figure S37.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.63

Table S49.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
FBXW7 MUTATED 3 4 4 0
FBXW7 WILD-TYPE 9 14 7 10
'FBXW7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.72

Table S50.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
FBXW7 MUTATED 3 3 3 1 1
FBXW7 WILD-TYPE 9 7 4 6 14
'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.73

Table S51.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
FBXW7 MUTATED 13 24 0 0 2
FBXW7 WILD-TYPE 43 128 11 5 16
'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.28

Table S52.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FBXW7 MUTATED 11 2 9
FBXW7 WILD-TYPE 32 37 44

Figure S38.  Get High-res Image Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.49

Table S53.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FBXW7 MUTATED 10 5 5 4 3 4
FBXW7 WILD-TYPE 29 31 32 6 37 20
'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.73

Table S54.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FBXW7 MUTATED 14 7 6 4
FBXW7 WILD-TYPE 51 57 34 13
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.39

Table S55.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
FBXW7 MUTATED 19 10 10
FBXW7 WILD-TYPE 60 75 73
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00414 (Fisher's exact test), Q value = 0.076

Table S56.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
FBXW7 MUTATED 12 0 4 8 5 4 6
FBXW7 WILD-TYPE 32 41 13 25 30 27 40

Figure S39.  Get High-res Image Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S57.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
FBXW7 MUTATED 11 12 12
FBXW7 WILD-TYPE 58 67 80
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00804 (Fisher's exact test), Q value = 0.12

Table S58.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
FBXW7 MUTATED 12 2 8 13
FBXW7 WILD-TYPE 61 41 71 32

Figure S40.  Get High-res Image Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.64

Table S59.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
FBXW7 MUTATED 7 2 7
FBXW7 WILD-TYPE 22 17 57
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.069 (Fisher's exact test), Q value = 0.4

Table S60.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
FBXW7 MUTATED 8 3 5
FBXW7 WILD-TYPE 25 45 26
'KRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.6

Table S61.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
KRAS MUTATED 5 2 3 1
KRAS WILD-TYPE 7 16 8 9
'KRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.16

Table S62.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
KRAS MUTATED 3 0 3 4 1
KRAS WILD-TYPE 9 10 4 3 14

Figure S41.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S63.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
KRAS MUTATED 2 44 2 0 2
KRAS WILD-TYPE 54 108 9 5 16

Figure S42.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.35

Table S64.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
KRAS MUTATED 5 8 17
KRAS WILD-TYPE 38 31 36
'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.69

Table S65.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
KRAS MUTATED 6 9 12 3 5 5
KRAS WILD-TYPE 33 27 25 7 35 19
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.48

Table S66.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
KRAS MUTATED 14 10 14 2
KRAS WILD-TYPE 51 54 26 15
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.6

Table S67.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
KRAS MUTATED 12 19 22
KRAS WILD-TYPE 67 66 61
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0064

Table S68.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
KRAS MUTATED 4 2 1 14 10 10 12
KRAS WILD-TYPE 40 39 16 19 25 21 34

Figure S43.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.16

Table S69.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
KRAS MUTATED 7 19 26
KRAS WILD-TYPE 62 60 66

Figure S44.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.15

Table S70.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
KRAS MUTATED 21 4 22 5
KRAS WILD-TYPE 52 39 57 40

Figure S45.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.98

Table S71.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
KRAS MUTATED 5 5 15
KRAS WILD-TYPE 24 14 49
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.58

Table S72.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
KRAS MUTATED 4 14 7
KRAS WILD-TYPE 29 34 24
'ARHGAP35 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.63

Table S73.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ARHGAP35 MUTATED 4 5 3 0
ARHGAP35 WILD-TYPE 8 13 8 10
'ARHGAP35 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S74.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ARHGAP35 MUTATED 4 2 2 1 3
ARHGAP35 WILD-TYPE 8 8 5 6 12
'ARHGAP35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.9

Table S75.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ARHGAP35 MUTATED 8 24 0 0 4
ARHGAP35 WILD-TYPE 48 128 11 5 14
'ARHGAP35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S76.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ARHGAP35 MUTATED 6 5 8
ARHGAP35 WILD-TYPE 37 34 45
'ARHGAP35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 0.34

Table S77.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ARHGAP35 MUTATED 11 8 2 2 4 2
ARHGAP35 WILD-TYPE 28 28 35 8 36 22
'ARHGAP35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.52

Table S78.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ARHGAP35 MUTATED 16 7 4 2
ARHGAP35 WILD-TYPE 49 57 36 15
'ARHGAP35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.63

Table S79.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ARHGAP35 MUTATED 16 11 9
ARHGAP35 WILD-TYPE 63 74 74
'ARHGAP35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00707 (Fisher's exact test), Q value = 0.11

Table S80.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ARHGAP35 MUTATED 5 1 5 10 7 4 4
ARHGAP35 WILD-TYPE 39 40 12 23 28 27 42

Figure S46.  Get High-res Image Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.9

Table S81.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ARHGAP35 MUTATED 10 13 10
ARHGAP35 WILD-TYPE 59 66 82
'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.58

Table S82.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ARHGAP35 MUTATED 13 3 8 9
ARHGAP35 WILD-TYPE 60 40 71 36
'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.73

Table S83.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ARHGAP35 MUTATED 6 2 6
ARHGAP35 WILD-TYPE 23 17 58
'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.6

Table S84.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ARHGAP35 MUTATED 6 3 5
ARHGAP35 WILD-TYPE 27 45 26
'PIK3CA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S85.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PIK3CA MUTATED 7 8 6 6
PIK3CA WILD-TYPE 5 10 5 4
'PIK3CA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.76

Table S86.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PIK3CA MUTATED 5 4 6 4 8
PIK3CA WILD-TYPE 7 6 1 3 7
'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.9

Table S87.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PIK3CA MUTATED 26 84 5 4 9
PIK3CA WILD-TYPE 30 68 6 1 9
'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S88.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PIK3CA MUTATED 21 22 26
PIK3CA WILD-TYPE 22 17 27
'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.76

Table S89.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PIK3CA MUTATED 17 22 19 7 18 15
PIK3CA WILD-TYPE 22 14 18 3 22 9
'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.96

Table S90.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PIK3CA MUTATED 32 32 24 10
PIK3CA WILD-TYPE 33 32 16 7
'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S91.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PIK3CA MUTATED 39 46 46
PIK3CA WILD-TYPE 40 39 37
'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.89

Table S92.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PIK3CA MUTATED 21 22 6 18 23 17 24
PIK3CA WILD-TYPE 23 19 11 15 12 14 22
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.62

Table S93.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PIK3CA MUTATED 31 43 54
PIK3CA WILD-TYPE 38 36 38
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.81

Table S94.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PIK3CA MUTATED 38 23 47 20
PIK3CA WILD-TYPE 35 20 32 25
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.75

Table S95.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
PIK3CA MUTATED 13 8 37
PIK3CA WILD-TYPE 16 11 27
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.95

Table S96.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
PIK3CA MUTATED 15 27 16
PIK3CA WILD-TYPE 18 21 15
'ARID1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.69

Table S97.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ARID1A MUTATED 5 3 4 5
ARID1A WILD-TYPE 7 15 7 5
'ARID1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0725 (Fisher's exact test), Q value = 0.41

Table S98.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ARID1A MUTATED 5 0 3 4 5
ARID1A WILD-TYPE 7 10 4 3 10
'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S99.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ARID1A MUTATED 3 67 2 1 7
ARID1A WILD-TYPE 53 85 9 4 11

Figure S47.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.47

Table S100.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ARID1A MUTATED 9 16 20
ARID1A WILD-TYPE 34 23 33
'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.19

Table S101.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ARID1A MUTATED 12 13 18 3 18 2
ARID1A WILD-TYPE 27 23 19 7 22 22

Figure S48.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.74

Table S102.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ARID1A MUTATED 22 24 17 3
ARID1A WILD-TYPE 43 40 23 14
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.21

Table S103.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ARID1A MUTATED 17 33 33
ARID1A WILD-TYPE 62 52 50

Figure S49.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S104.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ARID1A MUTATED 3 15 3 13 18 6 25
ARID1A WILD-TYPE 41 26 14 20 17 25 21

Figure S50.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.35

Table S105.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ARID1A MUTATED 17 24 39
ARID1A WILD-TYPE 52 55 53
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.006

Table S106.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ARID1A MUTATED 25 14 37 4
ARID1A WILD-TYPE 48 29 42 41

Figure S51.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.53

Table S107.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ARID1A MUTATED 6 7 27
ARID1A WILD-TYPE 23 12 37
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.52

Table S108.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ARID1A MUTATED 8 22 10
ARID1A WILD-TYPE 25 26 21
'CTNNB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S109.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CTNNB1 MUTATED 0 3 4 10
CTNNB1 WILD-TYPE 12 15 7 0

Figure S52.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0018

Table S110.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CTNNB1 MUTATED 4 0 1 0 12
CTNNB1 WILD-TYPE 8 10 6 7 3

Figure S53.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S111.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CTNNB1 MUTATED 1 58 5 2 6
CTNNB1 WILD-TYPE 55 94 6 3 12

Figure S54.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0033 (Fisher's exact test), Q value = 0.067

Table S112.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CTNNB1 MUTATED 4 13 20
CTNNB1 WILD-TYPE 39 26 33

Figure S55.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S113.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CTNNB1 MUTATED 6 10 6 0 32 10
CTNNB1 WILD-TYPE 33 26 31 10 8 14

Figure S56.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00597 (Fisher's exact test), Q value = 0.099

Table S114.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CTNNB1 MUTATED 15 32 10 7
CTNNB1 WILD-TYPE 50 32 30 10

Figure S57.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S115.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CTNNB1 MUTATED 9 48 17
CTNNB1 WILD-TYPE 70 37 66

Figure S58.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S116.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CTNNB1 MUTATED 0 39 1 7 14 10 3
CTNNB1 WILD-TYPE 44 2 16 26 21 21 43

Figure S59.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S117.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CTNNB1 MUTATED 5 46 20
CTNNB1 WILD-TYPE 64 33 72

Figure S60.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00091

Table S118.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CTNNB1 MUTATED 20 38 11 2
CTNNB1 WILD-TYPE 53 5 68 43

Figure S61.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0098

Table S119.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CTNNB1 MUTATED 0 8 17
CTNNB1 WILD-TYPE 29 11 47

Figure S62.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00269 (Fisher's exact test), Q value = 0.057

Table S120.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CTNNB1 MUTATED 1 15 9
CTNNB1 WILD-TYPE 32 33 22

Figure S63.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FGFR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.76

Table S121.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
FGFR2 MUTATED 3 2 1 0
FGFR2 WILD-TYPE 9 16 10 10
'FGFR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.76

Table S122.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
FGFR2 MUTATED 2 0 1 2 1
FGFR2 WILD-TYPE 10 10 6 5 14
'FGFR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.69

Table S123.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
FGFR2 MUTATED 3 22 2 1 2
FGFR2 WILD-TYPE 53 130 9 4 16
'FGFR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S124.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FGFR2 MUTATED 5 5 7
FGFR2 WILD-TYPE 38 34 46
'FGFR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S125.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FGFR2 MUTATED 6 5 6 1 4 3
FGFR2 WILD-TYPE 33 31 31 9 36 21
'FGFR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.87

Table S126.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FGFR2 MUTATED 7 8 6 4
FGFR2 WILD-TYPE 58 56 34 13
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S127.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
FGFR2 MUTATED 10 11 10
FGFR2 WILD-TYPE 69 74 73
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0766 (Fisher's exact test), Q value = 0.41

Table S128.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
FGFR2 MUTATED 2 2 2 8 7 3 7
FGFR2 WILD-TYPE 42 39 15 25 28 28 39
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S129.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
FGFR2 MUTATED 7 11 12
FGFR2 WILD-TYPE 62 68 80
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.48

Table S130.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
FGFR2 MUTATED 12 1 11 6
FGFR2 WILD-TYPE 61 42 68 39
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.7

Table S131.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
FGFR2 MUTATED 6 3 6
FGFR2 WILD-TYPE 23 16 58
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S132.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
FGFR2 MUTATED 4 7 4
FGFR2 WILD-TYPE 29 41 27
'ZFHX3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.76

Table S133.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZFHX3 MUTATED 6 6 2 2
ZFHX3 WILD-TYPE 6 12 9 8
'ZFHX3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.58

Table S134.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZFHX3 MUTATED 4 2 2 5 3
ZFHX3 WILD-TYPE 8 8 5 2 12
'ZFHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.27

Table S135.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZFHX3 MUTATED 3 34 2 0 3
ZFHX3 WILD-TYPE 53 118 9 5 15

Figure S64.  Get High-res Image Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.17

Table S136.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZFHX3 MUTATED 5 1 12
ZFHX3 WILD-TYPE 38 38 41

Figure S65.  Get High-res Image Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.73

Table S137.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZFHX3 MUTATED 7 11 5 3 5 4
ZFHX3 WILD-TYPE 32 25 32 7 35 20
'ZFHX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S138.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZFHX3 MUTATED 12 12 7 4
ZFHX3 WILD-TYPE 53 52 33 13
'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S139.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZFHX3 MUTATED 13 17 14
ZFHX3 WILD-TYPE 66 68 69
'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00756 (Fisher's exact test), Q value = 0.12

Table S140.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZFHX3 MUTATED 4 3 2 12 11 4 8
ZFHX3 WILD-TYPE 40 38 15 21 24 27 38

Figure S66.  Get High-res Image Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.56

Table S141.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZFHX3 MUTATED 7 17 17
ZFHX3 WILD-TYPE 62 62 75
'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0222 (Fisher's exact test), Q value = 0.22

Table S142.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZFHX3 MUTATED 19 3 15 4
ZFHX3 WILD-TYPE 54 40 64 41

Figure S67.  Get High-res Image Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.92

Table S143.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZFHX3 MUTATED 3 4 8
ZFHX3 WILD-TYPE 26 15 56
'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.88

Table S144.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZFHX3 MUTATED 4 5 6
ZFHX3 WILD-TYPE 29 43 25
'TCP11L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.31

Table S145.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TCP11L2 MUTATED 4 2 0 0
TCP11L2 WILD-TYPE 8 16 11 10

Figure S68.  Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TCP11L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.2

Table S146.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TCP11L2 MUTATED 2 0 1 3 0
TCP11L2 WILD-TYPE 10 10 6 4 15

Figure S69.  Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TCP11L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.51

Table S147.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TCP11L2 MUTATED 0 12 0 0 2
TCP11L2 WILD-TYPE 56 140 11 5 16
'TCP11L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.48

Table S148.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TCP11L2 MUTATED 1 0 5
TCP11L2 WILD-TYPE 42 39 48
'TCP11L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.58

Table S149.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TCP11L2 MUTATED 2 4 3 2 1 0
TCP11L2 WILD-TYPE 37 32 34 8 39 24
'TCP11L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.75

Table S150.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TCP11L2 MUTATED 3 4 5 0
TCP11L2 WILD-TYPE 62 60 35 17
'TCP11L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.69

Table S151.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TCP11L2 MUTATED 6 6 2
TCP11L2 WILD-TYPE 73 79 81
'TCP11L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0047

Table S152.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TCP11L2 MUTATED 0 0 1 6 6 0 1
TCP11L2 WILD-TYPE 44 41 16 27 29 31 45

Figure S70.  Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.79

Table S153.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TCP11L2 MUTATED 4 6 3
TCP11L2 WILD-TYPE 65 73 89
'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.76

Table S154.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TCP11L2 MUTATED 7 1 3 2
TCP11L2 WILD-TYPE 66 42 76 43
'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S155.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
TCP11L2 MUTATED 1 1 2
TCP11L2 WILD-TYPE 28 18 62
'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S156.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
TCP11L2 MUTATED 2 1 1
TCP11L2 WILD-TYPE 31 47 30
'SPOP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.75

Table S157.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SPOP MUTATED 2 1 0 2
SPOP WILD-TYPE 10 17 11 8
'SPOP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.97

Table S158.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SPOP MUTATED 0 1 1 1 2
SPOP WILD-TYPE 12 9 6 6 13
'SPOP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.9

Table S159.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SPOP MUTATED 3 15 1 1 1
SPOP WILD-TYPE 53 137 10 4 17
'SPOP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.79

Table S160.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SPOP MUTATED 4 1 5
SPOP WILD-TYPE 39 38 48
'SPOP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S161.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SPOP MUTATED 5 3 2 1 3 1
SPOP WILD-TYPE 34 33 35 9 37 23
'SPOP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S162.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SPOP MUTATED 4 6 4 1
SPOP WILD-TYPE 61 58 36 16
'SPOP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.79

Table S163.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SPOP MUTATED 6 10 5
SPOP WILD-TYPE 73 75 78
'SPOP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.49

Table S164.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SPOP MUTATED 2 1 2 4 7 1 4
SPOP WILD-TYPE 42 40 15 29 28 30 42
'SPOP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S165.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SPOP MUTATED 7 7 7
SPOP WILD-TYPE 62 72 85
'SPOP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.76

Table S166.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SPOP MUTATED 9 5 4 3
SPOP WILD-TYPE 64 38 75 42
'SPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.42

Table S167.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
SPOP MUTATED 3 3 2
SPOP WILD-TYPE 26 16 62
'SPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.79

Table S168.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
SPOP MUTATED 4 3 1
SPOP WILD-TYPE 29 45 30
'RBMX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.59

Table S169.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RBMX MUTATED 3 2 0 0
RBMX WILD-TYPE 9 16 11 10
'RBMX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0919 (Fisher's exact test), Q value = 0.44

Table S170.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RBMX MUTATED 2 0 1 2 0
RBMX WILD-TYPE 10 10 6 5 15
'RBMX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.54

Table S171.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RBMX MUTATED 0 12 0 0 0
RBMX WILD-TYPE 56 140 11 5 18
'RBMX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.76

Table S172.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RBMX MUTATED 1 0 3
RBMX WILD-TYPE 42 39 50
'RBMX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.2

Table S173.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RBMX MUTATED 1 3 3 3 0 1
RBMX WILD-TYPE 38 33 34 7 40 23

Figure S71.  Get High-res Image Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RBMX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.97

Table S174.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RBMX MUTATED 3 3 4 1
RBMX WILD-TYPE 62 61 36 16
'RBMX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.77

Table S175.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RBMX MUTATED 3 7 3
RBMX WILD-TYPE 76 78 80
'RBMX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0369 (Fisher's exact test), Q value = 0.29

Table S176.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RBMX MUTATED 1 0 1 6 2 1 2
RBMX WILD-TYPE 43 41 16 27 33 30 44

Figure S72.  Get High-res Image Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S177.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RBMX MUTATED 3 5 5
RBMX WILD-TYPE 66 74 87
'RBMX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00226 (Fisher's exact test), Q value = 0.053

Table S178.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RBMX MUTATED 10 0 3 0
RBMX WILD-TYPE 63 43 76 45

Figure S73.  Get High-res Image Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.89

Table S179.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
RBMX MUTATED 0 1 2
RBMX WILD-TYPE 29 18 62
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S180.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
RBMX MUTATED 1 1 1
RBMX WILD-TYPE 32 47 30
'SOX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.34

Table S181.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SOX17 MUTATED 0 4 1 1 1
SOX17 WILD-TYPE 56 148 10 4 17
'SOX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.53

Table S182.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SOX17 MUTATED 0 3 1
SOX17 WILD-TYPE 43 36 52
'SOX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.79

Table S183.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SOX17 MUTATED 2 0 3 0 1 0
SOX17 WILD-TYPE 37 36 34 10 39 24
'SOX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.56

Table S184.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SOX17 MUTATED 1 5 0 0
SOX17 WILD-TYPE 64 59 40 17
'SOX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.6

Table S185.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SOX17 MUTATED 1 1 5
SOX17 WILD-TYPE 78 84 78
'SOX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.85

Table S186.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SOX17 MUTATED 1 0 0 0 2 1 3
SOX17 WILD-TYPE 43 41 17 33 33 30 43
'SOX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S187.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SOX17 MUTATED 1 3 3
SOX17 WILD-TYPE 68 76 89
'SOX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.84

Table S188.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SOX17 MUTATED 2 1 4 0
SOX17 WILD-TYPE 71 42 75 45
'NFE2L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.44

Table S189.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
NFE2L2 MUTATED 0 1 3 0
NFE2L2 WILD-TYPE 12 17 8 10
'NFE2L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.73

Table S190.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
NFE2L2 MUTATED 1 0 2 0 1
NFE2L2 WILD-TYPE 11 10 5 7 14
'NFE2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.21

Table S191.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
NFE2L2 MUTATED 0 10 2 0 3
NFE2L2 WILD-TYPE 56 142 9 5 15

Figure S74.  Get High-res Image Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NFE2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.85

Table S192.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NFE2L2 MUTATED 1 3 3
NFE2L2 WILD-TYPE 42 36 50
'NFE2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.52

Table S193.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NFE2L2 MUTATED 3 2 4 2 0 2
NFE2L2 WILD-TYPE 36 34 33 8 40 22
'NFE2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.59

Table S194.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NFE2L2 MUTATED 3 3 6 1
NFE2L2 WILD-TYPE 62 61 34 16
'NFE2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00722 (Fisher's exact test), Q value = 0.11

Table S195.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
NFE2L2 MUTATED 2 2 11
NFE2L2 WILD-TYPE 77 83 72

Figure S75.  Get High-res Image Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NFE2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00755 (Fisher's exact test), Q value = 0.12

Table S196.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
NFE2L2 MUTATED 0 0 3 2 1 3 6
NFE2L2 WILD-TYPE 44 41 14 31 34 28 40

Figure S76.  Get High-res Image Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.54

Table S197.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
NFE2L2 MUTATED 4 2 9
NFE2L2 WILD-TYPE 65 77 83
'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 0.32

Table S198.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
NFE2L2 MUTATED 5 0 9 1
NFE2L2 WILD-TYPE 68 43 70 44

Figure S77.  Get High-res Image Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.76

Table S199.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
NFE2L2 MUTATED 0 1 5
NFE2L2 WILD-TYPE 29 18 59
'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.96

Table S200.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
NFE2L2 MUTATED 1 4 1
NFE2L2 WILD-TYPE 32 44 30
'CCND1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.95

Table S201.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CCND1 MUTATED 2 1 0 1
CCND1 WILD-TYPE 10 17 11 9
'CCND1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S202.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CCND1 MUTATED 1 0 1 1 1
CCND1 WILD-TYPE 11 10 6 6 14
'CCND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.52

Table S203.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CCND1 MUTATED 0 13 0 0 1
CCND1 WILD-TYPE 56 139 11 5 17
'CCND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.69

Table S204.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCND1 MUTATED 1 1 5
CCND1 WILD-TYPE 42 38 48
'CCND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.95

Table S205.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCND1 MUTATED 4 3 1 0 1 1
CCND1 WILD-TYPE 35 33 36 10 39 23
'CCND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S206.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCND1 MUTATED 3 4 2 1
CCND1 WILD-TYPE 62 60 38 16
'CCND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.84

Table S207.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CCND1 MUTATED 3 7 4
CCND1 WILD-TYPE 76 78 79
'CCND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.33

Table S208.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CCND1 MUTATED 0 1 0 5 4 1 3
CCND1 WILD-TYPE 44 40 17 28 31 30 43

Figure S78.  Get High-res Image Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.081 (Fisher's exact test), Q value = 0.42

Table S209.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CCND1 MUTATED 1 8 5
CCND1 WILD-TYPE 68 71 87
'CCND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.92

Table S210.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CCND1 MUTATED 6 2 5 1
CCND1 WILD-TYPE 67 41 74 44
'CCND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.85

Table S211.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CCND1 MUTATED 0 1 3
CCND1 WILD-TYPE 29 18 61
'CCND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.76

Table S212.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CCND1 MUTATED 0 3 1
CCND1 WILD-TYPE 33 45 30
'GNPTAB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.82

Table S213.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
GNPTAB MUTATED 1 3 0 0
GNPTAB WILD-TYPE 11 15 11 10
'GNPTAB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0778 (Fisher's exact test), Q value = 0.41

Table S214.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
GNPTAB MUTATED 3 0 1 0 0
GNPTAB WILD-TYPE 9 10 6 7 15
'GNPTAB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.49

Table S215.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
GNPTAB MUTATED 1 16 0 0 3
GNPTAB WILD-TYPE 55 136 11 5 15
'GNPTAB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.49

Table S216.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
GNPTAB MUTATED 3 1 8
GNPTAB WILD-TYPE 40 38 45
'GNPTAB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.77

Table S217.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
GNPTAB MUTATED 5 5 4 1 1 1
GNPTAB WILD-TYPE 34 31 33 9 39 23
'GNPTAB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S218.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
GNPTAB MUTATED 5 7 4 1
GNPTAB WILD-TYPE 60 57 36 16
'GNPTAB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.54

Table S219.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
GNPTAB MUTATED 9 8 3
GNPTAB WILD-TYPE 70 77 80
'GNPTAB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.021

Table S220.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
GNPTAB MUTATED 1 1 1 7 8 1 1
GNPTAB WILD-TYPE 43 40 16 26 27 30 45

Figure S79.  Get High-res Image Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GNPTAB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S221.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
GNPTAB MUTATED 6 7 6
GNPTAB WILD-TYPE 63 72 86
'GNPTAB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.62

Table S222.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
GNPTAB MUTATED 10 2 4 3
GNPTAB WILD-TYPE 63 41 75 42
'GNPTAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.98

Table S223.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
GNPTAB MUTATED 3 2 4
GNPTAB WILD-TYPE 26 17 60
'GNPTAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.79

Table S224.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
GNPTAB MUTATED 4 2 3
GNPTAB WILD-TYPE 29 46 28
'ARID5B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S225.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ARID5B MUTATED 3 3 2 2
ARID5B WILD-TYPE 9 15 9 8
'ARID5B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.53

Table S226.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ARID5B MUTATED 4 0 3 1 2
ARID5B WILD-TYPE 8 10 4 6 13
'ARID5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00475 (Fisher's exact test), Q value = 0.086

Table S227.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ARID5B MUTATED 0 25 1 0 2
ARID5B WILD-TYPE 56 127 10 5 16

Figure S80.  Get High-res Image Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.59

Table S228.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ARID5B MUTATED 1 1 6
ARID5B WILD-TYPE 42 38 47
'ARID5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.65

Table S229.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ARID5B MUTATED 4 5 5 4 3 3
ARID5B WILD-TYPE 35 31 32 6 37 21
'ARID5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.57

Table S230.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ARID5B MUTATED 4 10 7 3
ARID5B WILD-TYPE 61 54 33 14
'ARID5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.57

Table S231.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ARID5B MUTATED 5 13 11
ARID5B WILD-TYPE 74 72 72
'ARID5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.31

Table S232.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ARID5B MUTATED 1 2 1 7 7 5 6
ARID5B WILD-TYPE 43 39 16 26 28 26 40

Figure S81.  Get High-res Image Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.55

Table S233.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ARID5B MUTATED 5 7 15
ARID5B WILD-TYPE 64 72 77
'ARID5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.49

Table S234.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ARID5B MUTATED 11 4 11 1
ARID5B WILD-TYPE 62 39 68 44
'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.59

Table S235.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ARID5B MUTATED 0 2 4
ARID5B WILD-TYPE 29 17 60
'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.96

Table S236.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ARID5B MUTATED 1 4 1
ARID5B WILD-TYPE 32 44 30
'DNER MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.59

Table S237.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
DNER MUTATED 3 2 0 0
DNER WILD-TYPE 9 16 11 10
'DNER MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0928 (Fisher's exact test), Q value = 0.44

Table S238.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
DNER MUTATED 2 0 2 1 0
DNER WILD-TYPE 10 10 5 6 15
'DNER MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.26

Table S239.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
DNER MUTATED 0 15 0 0 3
DNER WILD-TYPE 56 137 11 5 15

Figure S82.  Get High-res Image Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNER MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S240.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
DNER MUTATED 3 1 4
DNER WILD-TYPE 40 38 49
'DNER MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.16

Table S241.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
DNER MUTATED 4 4 4 3 0 0
DNER WILD-TYPE 35 32 33 7 40 24

Figure S83.  Get High-res Image Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DNER MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.69

Table S242.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
DNER MUTATED 4 5 6 0
DNER WILD-TYPE 61 59 34 17
'DNER MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S243.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
DNER MUTATED 6 7 5
DNER WILD-TYPE 73 78 78
'DNER MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.011

Table S244.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
DNER MUTATED 0 0 2 5 7 0 4
DNER WILD-TYPE 44 41 15 28 28 31 42

Figure S84.  Get High-res Image Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNER MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S245.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
DNER MUTATED 6 6 5
DNER WILD-TYPE 63 73 87
'DNER MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.89

Table S246.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
DNER MUTATED 7 1 6 3
DNER WILD-TYPE 66 42 73 42
'DNER MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S247.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
DNER MUTATED 1 1 5
DNER WILD-TYPE 28 18 59
'DNER MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.84

Table S248.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
DNER MUTATED 1 3 3
DNER WILD-TYPE 32 45 28
'EP300 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S249.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
EP300 MUTATED 1 1 1 0
EP300 WILD-TYPE 11 17 10 10
'EP300 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S250.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
EP300 MUTATED 1 0 1 0 1
EP300 WILD-TYPE 11 10 6 7 14
'EP300 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.18

Table S251.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
EP300 MUTATED 0 18 0 1 2
EP300 WILD-TYPE 56 134 11 4 16

Figure S85.  Get High-res Image Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EP300 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.64

Table S252.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EP300 MUTATED 1 2 6
EP300 WILD-TYPE 42 37 47
'EP300 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.53

Table S253.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EP300 MUTATED 5 7 3 2 3 0
EP300 WILD-TYPE 34 29 34 8 37 24
'EP300 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.89

Table S254.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EP300 MUTATED 8 7 5 0
EP300 WILD-TYPE 57 57 35 17
'EP300 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.81

Table S255.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
EP300 MUTATED 4 9 7
EP300 WILD-TYPE 75 76 76
'EP300 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.27

Table S256.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
EP300 MUTATED 0 2 2 6 5 1 4
EP300 WILD-TYPE 44 39 15 27 30 30 42

Figure S86.  Get High-res Image Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EP300 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.96

Table S257.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
EP300 MUTATED 5 9 7
EP300 WILD-TYPE 64 70 85
'EP300 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.69

Table S258.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
EP300 MUTATED 8 3 9 1
EP300 WILD-TYPE 65 40 70 44
'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.76

Table S259.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
EP300 MUTATED 0 1 5
EP300 WILD-TYPE 29 18 59
'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.76

Table S260.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
EP300 MUTATED 2 1 3
EP300 WILD-TYPE 31 47 28
'MAX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.56

Table S261.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MAX MUTATED 0 9 0 0 2
MAX WILD-TYPE 56 143 11 5 16
'MAX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.85

Table S262.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MAX MUTATED 1 3 3
MAX WILD-TYPE 42 36 50
'MAX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.97

Table S263.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MAX MUTATED 3 3 2 0 1 0
MAX WILD-TYPE 36 33 35 10 39 24
'MAX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S264.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MAX MUTATED 3 4 2 0
MAX WILD-TYPE 62 60 38 17
'MAX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.83

Table S265.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MAX MUTATED 5 4 2
MAX WILD-TYPE 74 81 81
'MAX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0536 (Fisher's exact test), Q value = 0.35

Table S266.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MAX MUTATED 0 1 1 2 5 0 2
MAX WILD-TYPE 44 40 16 31 30 31 44
'MAX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S267.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MAX MUTATED 3 4 4
MAX WILD-TYPE 66 75 88
'MAX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S268.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MAX MUTATED 4 2 4 1
MAX WILD-TYPE 69 41 75 44
'MAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.76

Table S269.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MAX MUTATED 1 2 2
MAX WILD-TYPE 28 17 62
'MAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.81

Table S270.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MAX MUTATED 3 1 1
MAX WILD-TYPE 30 47 30
'SGK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.76

Table S271.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SGK1 MUTATED 2 1 0 0
SGK1 WILD-TYPE 10 17 11 10
'SGK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.69

Table S272.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SGK1 MUTATED 1 0 1 1 0
SGK1 WILD-TYPE 11 10 6 6 15
'SGK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.57

Table S273.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SGK1 MUTATED 1 10 1 1 2
SGK1 WILD-TYPE 55 142 10 4 16
'SGK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S274.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SGK1 MUTATED 1 1 3
SGK1 WILD-TYPE 42 38 50
'SGK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.57

Table S275.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SGK1 MUTATED 4 5 1 2 1 2
SGK1 WILD-TYPE 35 31 36 8 39 22
'SGK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S276.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SGK1 MUTATED 6 5 3 1
SGK1 WILD-TYPE 59 59 37 16
'SGK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.72

Table S277.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SGK1 MUTATED 4 8 3
SGK1 WILD-TYPE 75 77 80
'SGK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.69

Table S278.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SGK1 MUTATED 0 3 2 2 4 1 3
SGK1 WILD-TYPE 44 38 15 31 31 30 43
'SGK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.73

Table S279.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SGK1 MUTATED 2 7 5
SGK1 WILD-TYPE 67 72 87
'SGK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.74

Table S280.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SGK1 MUTATED 7 3 3 1
SGK1 WILD-TYPE 66 40 76 44
'SGK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.89

Table S281.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
SGK1 MUTATED 0 1 2
SGK1 WILD-TYPE 29 18 62
'SGK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S282.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
SGK1 MUTATED 1 2 0
SGK1 WILD-TYPE 32 46 31
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S283.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
NRAS MUTATED 1 7 0 0 1
NRAS WILD-TYPE 55 145 11 5 17
'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.68

Table S284.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NRAS MUTATED 0 2 0 0 2 2
NRAS WILD-TYPE 39 34 37 10 38 22
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.6

Table S285.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NRAS MUTATED 2 2 0 2
NRAS WILD-TYPE 63 62 40 15
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.95

Table S286.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
NRAS MUTATED 4 3 2
NRAS WILD-TYPE 75 82 81
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S287.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
NRAS MUTATED 1 2 1 1 2 0 2
NRAS WILD-TYPE 43 39 16 32 33 31 44
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S288.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
NRAS MUTATED 3 3 3
NRAS WILD-TYPE 66 76 89
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S289.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
NRAS MUTATED 3 1 4 1
NRAS WILD-TYPE 70 42 75 44
'KLHL8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.76

Table S290.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
KLHL8 MUTATED 2 1 0 0
KLHL8 WILD-TYPE 10 17 11 10
'KLHL8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.69

Table S291.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
KLHL8 MUTATED 1 0 1 1 0
KLHL8 WILD-TYPE 11 10 6 6 15
'KLHL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.54

Table S292.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
KLHL8 MUTATED 0 10 0 0 2
KLHL8 WILD-TYPE 56 142 11 5 16
'KLHL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.86

Table S293.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
KLHL8 MUTATED 1 1 4
KLHL8 WILD-TYPE 42 38 49
'KLHL8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S294.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
KLHL8 MUTATED 2 2 4 0 1 1
KLHL8 WILD-TYPE 37 34 33 10 39 23
'KLHL8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.97

Table S295.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
KLHL8 MUTATED 2 4 3 1
KLHL8 WILD-TYPE 63 60 37 16
'KLHL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.65

Table S296.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
KLHL8 MUTATED 3 7 2
KLHL8 WILD-TYPE 76 78 81
'KLHL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00499 (Fisher's exact test), Q value = 0.089

Table S297.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
KLHL8 MUTATED 0 1 1 6 3 0 1
KLHL8 WILD-TYPE 44 40 16 27 32 31 45

Figure S87.  Get High-res Image Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLHL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.82

Table S298.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
KLHL8 MUTATED 3 6 3
KLHL8 WILD-TYPE 66 73 89
'KLHL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S299.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
KLHL8 MUTATED 4 2 3 3
KLHL8 WILD-TYPE 69 41 76 42
'KLHL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.81

Table S300.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
KLHL8 MUTATED 0 1 4
KLHL8 WILD-TYPE 29 18 60
'KLHL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S301.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
KLHL8 MUTATED 2 2 1
KLHL8 WILD-TYPE 31 46 30
'MORC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.91

Table S302.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MORC4 MUTATED 1 3 0 1
MORC4 WILD-TYPE 11 15 11 9
'MORC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S303.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MORC4 MUTATED 2 1 1 0 1
MORC4 WILD-TYPE 10 9 6 7 14
'MORC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.47

Table S304.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MORC4 MUTATED 1 17 0 1 1
MORC4 WILD-TYPE 55 135 11 4 17
'MORC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.81

Table S305.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MORC4 MUTATED 2 5 5
MORC4 WILD-TYPE 41 34 48
'MORC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.56

Table S306.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MORC4 MUTATED 6 5 1 1 4 0
MORC4 WILD-TYPE 33 31 36 9 36 24
'MORC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.76

Table S307.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MORC4 MUTATED 9 5 3 0
MORC4 WILD-TYPE 56 59 37 17
'MORC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.52

Table S308.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MORC4 MUTATED 7 10 3
MORC4 WILD-TYPE 72 75 80
'MORC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0816 (Fisher's exact test), Q value = 0.42

Table S309.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MORC4 MUTATED 1 4 1 6 5 2 1
MORC4 WILD-TYPE 43 37 16 27 30 29 45
'MORC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.22

Table S310.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MORC4 MUTATED 3 12 4
MORC4 WILD-TYPE 66 67 88

Figure S88.  Get High-res Image Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MORC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.52

Table S311.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MORC4 MUTATED 10 4 3 2
MORC4 WILD-TYPE 63 39 76 43
'MORC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.28

Table S312.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MORC4 MUTATED 0 4 5
MORC4 WILD-TYPE 29 15 59

Figure S89.  Get High-res Image Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MORC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.76

Table S313.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MORC4 MUTATED 1 4 4
MORC4 WILD-TYPE 32 44 27
'ZNF781 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.69

Table S314.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF781 MUTATED 0 10 0 0 0
ZNF781 WILD-TYPE 56 142 11 5 18
'ZNF781 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S315.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF781 MUTATED 1 2 3
ZNF781 WILD-TYPE 42 37 50
'ZNF781 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S316.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF781 MUTATED 3 2 2 1 1 1
ZNF781 WILD-TYPE 36 34 35 9 39 23
'ZNF781 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S317.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF781 MUTATED 4 3 2 1
ZNF781 WILD-TYPE 61 61 38 16
'ZNF781 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.87

Table S318.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF781 MUTATED 3 5 2
ZNF781 WILD-TYPE 76 80 81
'ZNF781 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.18

Table S319.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF781 MUTATED 1 0 0 5 3 0 1
ZNF781 WILD-TYPE 43 41 17 28 32 31 45

Figure S90.  Get High-res Image Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF781 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.88

Table S320.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF781 MUTATED 1 4 4
ZNF781 WILD-TYPE 68 75 88
'ZNF781 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.9

Table S321.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF781 MUTATED 5 1 2 1
ZNF781 WILD-TYPE 68 42 77 44
'ZNF781 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S322.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF781 MUTATED 1 1 3
ZNF781 WILD-TYPE 28 18 61
'ZNF781 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.73

Table S323.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF781 MUTATED 1 1 3
ZNF781 WILD-TYPE 32 47 28
'MKI67 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.22

Table S324.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MKI67 MUTATED 6 4 0 1
MKI67 WILD-TYPE 6 14 11 9

Figure S91.  Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MKI67 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.18

Table S325.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MKI67 MUTATED 4 0 2 4 1
MKI67 WILD-TYPE 8 10 5 3 14

Figure S92.  Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.04

Table S326.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MKI67 MUTATED 0 26 0 0 3
MKI67 WILD-TYPE 56 126 11 5 15

Figure S93.  Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MKI67 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.73

Table S327.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MKI67 MUTATED 2 3 7
MKI67 WILD-TYPE 41 36 46
'MKI67 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.75

Table S328.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MKI67 MUTATED 7 6 6 3 4 1
MKI67 WILD-TYPE 32 30 31 7 36 23
'MKI67 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.9

Table S329.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MKI67 MUTATED 10 8 8 1
MKI67 WILD-TYPE 55 56 32 16
'MKI67 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.39

Table S330.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MKI67 MUTATED 9 15 5
MKI67 WILD-TYPE 70 70 78
'MKI67 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.01

Table S331.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MKI67 MUTATED 1 3 2 11 8 1 3
MKI67 WILD-TYPE 43 38 15 22 27 30 43

Figure S94.  Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.52

Table S332.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MKI67 MUTATED 4 13 11
MKI67 WILD-TYPE 65 66 81
'MKI67 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.31

Table S333.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MKI67 MUTATED 15 2 8 3
MKI67 WILD-TYPE 58 41 71 42

Figure S95.  Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S334.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MKI67 MUTATED 3 2 6
MKI67 WILD-TYPE 26 17 58
'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.24

Table S335.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MKI67 MUTATED 2 2 7
MKI67 WILD-TYPE 31 46 24

Figure S96.  Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.52

Table S336.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ING1 MUTATED 0 11 0 0 2
ING1 WILD-TYPE 56 141 11 5 16
'ING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.96

Table S337.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ING1 MUTATED 3 1 4
ING1 WILD-TYPE 40 38 49
'ING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.76

Table S338.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ING1 MUTATED 4 4 3 1 1 0
ING1 WILD-TYPE 35 32 34 9 39 24
'ING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S339.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ING1 MUTATED 5 5 3 0
ING1 WILD-TYPE 60 59 37 17
'ING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.99

Table S340.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ING1 MUTATED 5 3 5
ING1 WILD-TYPE 74 82 78
'ING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0479 (Fisher's exact test), Q value = 0.33

Table S341.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ING1 MUTATED 0 1 1 2 5 0 4
ING1 WILD-TYPE 44 40 16 31 30 31 42

Figure S97.  Get High-res Image Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S342.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ING1 MUTATED 3 3 6
ING1 WILD-TYPE 66 76 86
'ING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.29

Table S343.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ING1 MUTATED 7 0 5 0
ING1 WILD-TYPE 66 43 74 45

Figure S98.  Get High-res Image Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.18

Table S344.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ING1 MUTATED 0 4 3
ING1 WILD-TYPE 29 15 61

Figure S99.  Get High-res Image Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.69

Table S345.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ING1 MUTATED 1 2 4
ING1 WILD-TYPE 32 46 27
'INTS7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.76

Table S346.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
INTS7 MUTATED 2 1 0 0
INTS7 WILD-TYPE 10 17 11 10
'INTS7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.69

Table S347.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
INTS7 MUTATED 1 0 1 1 0
INTS7 WILD-TYPE 11 10 6 6 15
'INTS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.79

Table S348.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
INTS7 MUTATED 0 8 0 0 0
INTS7 WILD-TYPE 56 144 11 5 18
'INTS7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.51

Table S349.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
INTS7 MUTATED 1 4 0 1 2 0
INTS7 WILD-TYPE 38 32 37 9 38 24
'INTS7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S350.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
INTS7 MUTATED 4 3 1 0
INTS7 WILD-TYPE 61 61 39 17
'INTS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.41

Table S351.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
INTS7 MUTATED 3 5 0
INTS7 WILD-TYPE 76 80 83
'INTS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0052 (Fisher's exact test), Q value = 0.09

Table S352.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
INTS7 MUTATED 0 1 0 2 5 0 0
INTS7 WILD-TYPE 44 40 17 31 30 31 46

Figure S100.  Get High-res Image Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INTS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.75

Table S353.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
INTS7 MUTATED 2 4 1
INTS7 WILD-TYPE 67 75 91
'INTS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.51

Table S354.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
INTS7 MUTATED 4 2 0 1
INTS7 WILD-TYPE 69 41 79 44
'CCDC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S355.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CCDC6 MUTATED 2 4 0 0 0
CCDC6 WILD-TYPE 54 148 11 5 18
'CCDC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.87

Table S356.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC6 MUTATED 3 1 1
CCDC6 WILD-TYPE 40 38 52
'CCDC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.6

Table S357.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC6 MUTATED 2 0 1 1 0 1
CCDC6 WILD-TYPE 37 36 36 9 40 23
'CCDC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.79

Table S358.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC6 MUTATED 1 1 2 1
CCDC6 WILD-TYPE 64 63 38 16
'CCDC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.81

Table S359.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CCDC6 MUTATED 3 1 2
CCDC6 WILD-TYPE 76 84 81
'CCDC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.66

Table S360.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CCDC6 MUTATED 1 0 2 1 1 0 1
CCDC6 WILD-TYPE 43 41 15 32 34 31 45
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.42

Table S361.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CCDC6 MUTATED 4 0 2
CCDC6 WILD-TYPE 65 79 90
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.9

Table S362.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CCDC6 MUTATED 2 0 2 2
CCDC6 WILD-TYPE 71 43 77 43
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.9

Table S363.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CCDC6 MUTATED 2 1 2
CCDC6 WILD-TYPE 27 18 62
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.81

Table S364.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CCDC6 MUTATED 3 1 1
CCDC6 WILD-TYPE 30 47 30
'EIF2S2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.76

Table S365.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
EIF2S2 MUTATED 0 9 0 0 0
EIF2S2 WILD-TYPE 56 143 11 5 18
'EIF2S2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S366.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EIF2S2 MUTATED 1 1 3
EIF2S2 WILD-TYPE 42 38 50
'EIF2S2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S367.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EIF2S2 MUTATED 2 2 1 1 2 1
EIF2S2 WILD-TYPE 37 34 36 9 38 23
'EIF2S2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.93

Table S368.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EIF2S2 MUTATED 3 5 1 0
EIF2S2 WILD-TYPE 62 59 39 17
'EIF2S2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.67

Table S369.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
EIF2S2 MUTATED 3 5 1
EIF2S2 WILD-TYPE 76 80 82
'EIF2S2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.76

Table S370.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
EIF2S2 MUTATED 1 1 1 2 3 1 0
EIF2S2 WILD-TYPE 43 40 16 31 32 30 46
'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S371.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
EIF2S2 MUTATED 2 4 3
EIF2S2 WILD-TYPE 67 75 89
'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.87

Table S372.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
EIF2S2 MUTATED 4 2 1 2
EIF2S2 WILD-TYPE 69 41 78 43
'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S373.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
EIF2S2 MUTATED 1 1 2
EIF2S2 WILD-TYPE 28 18 62
'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S374.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
EIF2S2 MUTATED 2 1 1
EIF2S2 WILD-TYPE 31 47 30
'RBBP6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.91

Table S375.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RBBP6 MUTATED 1 3 0 1
RBBP6 WILD-TYPE 11 15 11 9
'RBBP6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.21

Table S376.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RBBP6 MUTATED 4 0 0 1 0
RBBP6 WILD-TYPE 8 10 7 6 15

Figure S101.  Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RBBP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.16

Table S377.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RBBP6 MUTATED 0 19 0 0 3
RBBP6 WILD-TYPE 56 133 11 5 15

Figure S102.  Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBBP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S378.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RBBP6 MUTATED 3 3 5
RBBP6 WILD-TYPE 40 36 48
'RBBP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S379.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RBBP6 MUTATED 4 6 4 1 4 1
RBBP6 WILD-TYPE 35 30 33 9 36 23
'RBBP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S380.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RBBP6 MUTATED 7 8 4 1
RBBP6 WILD-TYPE 58 56 36 16
'RBBP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0505 (Fisher's exact test), Q value = 0.34

Table S381.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RBBP6 MUTATED 7 12 3
RBBP6 WILD-TYPE 72 73 80
'RBBP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S382.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RBBP6 MUTATED 0 2 1 7 9 2 1
RBBP6 WILD-TYPE 44 39 16 26 26 29 45

Figure S103.  Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBBP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S383.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RBBP6 MUTATED 5 8 8
RBBP6 WILD-TYPE 64 71 84
'RBBP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00452 (Fisher's exact test), Q value = 0.082

Table S384.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RBBP6 MUTATED 14 2 4 1
RBBP6 WILD-TYPE 59 41 75 44

Figure S104.  Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBBP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.28

Table S385.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
RBBP6 MUTATED 0 4 5
RBBP6 WILD-TYPE 29 15 59

Figure S105.  Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RBBP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.032 (Fisher's exact test), Q value = 0.27

Table S386.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
RBBP6 MUTATED 1 2 6
RBBP6 WILD-TYPE 32 46 25

Figure S106.  Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SOS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.95

Table S387.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SOS1 MUTATED 1 1 2 0
SOS1 WILD-TYPE 11 17 9 10
'SOS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S388.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SOS1 MUTATED 1 0 1 1 1
SOS1 WILD-TYPE 11 10 6 6 14
'SOS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.41

Table S389.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SOS1 MUTATED 0 11 0 1 0
SOS1 WILD-TYPE 56 141 11 4 18
'SOS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.89

Table S390.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SOS1 MUTATED 2 0 2
SOS1 WILD-TYPE 41 39 51
'SOS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.63

Table S391.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SOS1 MUTATED 2 4 0 0 3 0
SOS1 WILD-TYPE 37 32 37 10 37 24
'SOS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.68

Table S392.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SOS1 MUTATED 4 5 0 0
SOS1 WILD-TYPE 61 59 40 17
'SOS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S393.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SOS1 MUTATED 4 3 4
SOS1 WILD-TYPE 75 82 79
'SOS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.3

Table S394.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SOS1 MUTATED 0 0 1 2 4 3 1
SOS1 WILD-TYPE 44 41 16 31 31 28 45

Figure S107.  Get High-res Image Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SOS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.63

Table S395.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SOS1 MUTATED 1 6 4
SOS1 WILD-TYPE 68 73 88
'SOS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.96

Table S396.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SOS1 MUTATED 5 1 4 1
SOS1 WILD-TYPE 68 42 75 44
'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.52

Table S397.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
SOS1 MUTATED 1 2 1
SOS1 WILD-TYPE 28 17 63
'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.57

Table S398.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
SOS1 MUTATED 2 0 2
SOS1 WILD-TYPE 31 48 29
'NAT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.76

Table S399.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
NAT1 MUTATED 2 1 0 0
NAT1 WILD-TYPE 10 17 11 10
'NAT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0777 (Fisher's exact test), Q value = 0.41

Table S400.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
NAT1 MUTATED 1 0 0 2 0
NAT1 WILD-TYPE 11 10 7 5 15
'NAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.8

Table S401.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
NAT1 MUTATED 0 6 0 0 1
NAT1 WILD-TYPE 56 146 11 5 17
'NAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.48

Table S402.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NAT1 MUTATED 0 1 3 1 0 1
NAT1 WILD-TYPE 39 35 34 9 40 23
'NAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.22

Table S403.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NAT1 MUTATED 1 0 4 1
NAT1 WILD-TYPE 64 64 36 16

Figure S108.  Get High-res Image Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.78

Table S404.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
NAT1 MUTATED 2 4 1
NAT1 WILD-TYPE 77 81 82
'NAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00223 (Fisher's exact test), Q value = 0.053

Table S405.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
NAT1 MUTATED 0 0 0 3 4 0 0
NAT1 WILD-TYPE 44 41 17 30 31 31 46

Figure S109.  Get High-res Image Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S406.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
NAT1 MUTATED 2 2 3
NAT1 WILD-TYPE 67 77 89
'NAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.69

Table S407.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
NAT1 MUTATED 4 0 3 0
NAT1 WILD-TYPE 69 43 76 45
'ADNP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.42

Table S408.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ADNP MUTATED 4 1 1 0
ADNP WILD-TYPE 8 17 10 10
'ADNP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.59

Table S409.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ADNP MUTATED 1 0 2 2 1
ADNP WILD-TYPE 11 10 5 5 14
'ADNP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.52

Table S410.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ADNP MUTATED 0 13 0 0 1
ADNP WILD-TYPE 56 139 11 5 17
'ADNP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S411.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ADNP MUTATED 2 1 3
ADNP WILD-TYPE 41 38 50
'ADNP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.91

Table S412.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ADNP MUTATED 4 3 2 2 2 1
ADNP WILD-TYPE 35 33 35 8 38 23
'ADNP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.97

Table S413.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ADNP MUTATED 3 6 4 1
ADNP WILD-TYPE 62 58 36 16
'ADNP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.81

Table S414.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ADNP MUTATED 4 7 3
ADNP WILD-TYPE 75 78 80
'ADNP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00392 (Fisher's exact test), Q value = 0.075

Table S415.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ADNP MUTATED 0 0 1 5 5 2 1
ADNP WILD-TYPE 44 41 16 28 30 29 45

Figure S110.  Get High-res Image Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADNP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S416.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ADNP MUTATED 3 6 5
ADNP WILD-TYPE 66 73 87
'ADNP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.86

Table S417.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ADNP MUTATED 7 2 3 2
ADNP WILD-TYPE 66 41 76 43
'ADNP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.31

Table S418.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ADNP MUTATED 2 2 0
ADNP WILD-TYPE 27 17 64

Figure S111.  Get High-res Image Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ADNP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.57

Table S419.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ADNP MUTATED 2 0 2
ADNP WILD-TYPE 31 48 29
'VPS11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.76

Table S420.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
VPS11 MUTATED 2 1 0 0
VPS11 WILD-TYPE 10 17 11 10
'VPS11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.69

Table S421.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
VPS11 MUTATED 1 0 1 1 0
VPS11 WILD-TYPE 11 10 6 6 15
'VPS11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.79

Table S422.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
VPS11 MUTATED 1 9 0 0 2
VPS11 WILD-TYPE 55 143 11 5 16
'VPS11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S423.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
VPS11 MUTATED 2 1 2
VPS11 WILD-TYPE 41 38 51
'VPS11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.69

Table S424.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
VPS11 MUTATED 3 2 2 2 1 0
VPS11 WILD-TYPE 36 34 35 8 39 24
'VPS11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.77

Table S425.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
VPS11 MUTATED 4 2 4 0
VPS11 WILD-TYPE 61 62 36 17
'VPS11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.75

Table S426.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
VPS11 MUTATED 4 6 2
VPS11 WILD-TYPE 75 79 81
'VPS11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00704 (Fisher's exact test), Q value = 0.11

Table S427.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
VPS11 MUTATED 1 0 1 4 5 1 0
VPS11 WILD-TYPE 43 41 16 29 30 30 46

Figure S112.  Get High-res Image Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VPS11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.88

Table S428.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
VPS11 MUTATED 5 4 3
VPS11 WILD-TYPE 64 75 89
'VPS11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.6

Table S429.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
VPS11 MUTATED 6 0 3 3
VPS11 WILD-TYPE 67 43 76 42
'VPS11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.65

Table S430.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
VPS11 MUTATED 2 0 1
VPS11 WILD-TYPE 27 19 63
'VPS11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.58

Table S431.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
VPS11 MUTATED 2 0 1
VPS11 WILD-TYPE 31 48 30
'L1TD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 0.41

Table S432.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
L1TD1 MUTATED 0 14 0 0 2
L1TD1 WILD-TYPE 56 138 11 5 16
'L1TD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.54

Table S433.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
L1TD1 MUTATED 2 1 7
L1TD1 WILD-TYPE 41 38 46
'L1TD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 0.41

Table S434.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
L1TD1 MUTATED 3 5 2 2 0 1
L1TD1 WILD-TYPE 36 31 35 8 40 23
'L1TD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S435.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
L1TD1 MUTATED 4 5 3 1
L1TD1 WILD-TYPE 61 59 37 16
'L1TD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.77

Table S436.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
L1TD1 MUTATED 7 6 3
L1TD1 WILD-TYPE 72 79 80
'L1TD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00127 (Fisher's exact test), Q value = 0.036

Table S437.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
L1TD1 MUTATED 0 1 1 5 7 0 2
L1TD1 WILD-TYPE 44 40 16 28 28 31 44

Figure S113.  Get High-res Image Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'L1TD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S438.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
L1TD1 MUTATED 4 6 5
L1TD1 WILD-TYPE 65 73 87
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.69

Table S439.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
L1TD1 MUTATED 8 2 4 1
L1TD1 WILD-TYPE 65 41 75 44
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S440.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
L1TD1 MUTATED 1 2 4
L1TD1 WILD-TYPE 28 17 60
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.89

Table S441.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
L1TD1 MUTATED 2 2 3
L1TD1 WILD-TYPE 31 46 28
'MARK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.52

Table S442.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MARK3 MUTATED 3 1 0 0
MARK3 WILD-TYPE 9 17 11 10
'MARK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 0.44

Table S443.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MARK3 MUTATED 1 0 2 1 0
MARK3 WILD-TYPE 11 10 5 6 15
'MARK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.56

Table S444.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MARK3 MUTATED 0 9 0 0 2
MARK3 WILD-TYPE 56 143 11 5 16
'MARK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.3

Table S445.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MARK3 MUTATED 0 0 4
MARK3 WILD-TYPE 43 39 49

Figure S114.  Get High-res Image Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MARK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.31

Table S446.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MARK3 MUTATED 1 6 1 1 1 0
MARK3 WILD-TYPE 38 30 36 9 39 24

Figure S115.  Get High-res Image Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MARK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.94

Table S447.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MARK3 MUTATED 5 4 1 0
MARK3 WILD-TYPE 60 60 39 17
'MARK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.89

Table S448.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MARK3 MUTATED 4 5 2
MARK3 WILD-TYPE 75 80 81
'MARK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.019

Table S449.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MARK3 MUTATED 0 0 0 3 6 2 0
MARK3 WILD-TYPE 44 41 17 30 29 29 46

Figure S116.  Get High-res Image Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MARK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.77

Table S450.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MARK3 MUTATED 3 5 2
MARK3 WILD-TYPE 66 74 90
'MARK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.72

Table S451.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MARK3 MUTATED 6 1 2 1
MARK3 WILD-TYPE 67 42 77 44
'CTNND1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.69

Table S452.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CTNND1 MUTATED 3 1 1 0
CTNND1 WILD-TYPE 9 17 10 10
'CTNND1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.77

Table S453.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CTNND1 MUTATED 1 0 2 1 1
CTNND1 WILD-TYPE 11 10 5 6 14
'CTNND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.53

Table S454.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CTNND1 MUTATED 1 15 0 0 3
CTNND1 WILD-TYPE 55 137 11 5 15
'CTNND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S455.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CTNND1 MUTATED 3 2 4
CTNND1 WILD-TYPE 40 37 49
'CTNND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.17

Table S456.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CTNND1 MUTATED 3 4 1 4 4 0
CTNND1 WILD-TYPE 36 32 36 6 36 24

Figure S117.  Get High-res Image Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CTNND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S457.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CTNND1 MUTATED 6 6 4 0
CTNND1 WILD-TYPE 59 58 36 17
'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.92

Table S458.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CTNND1 MUTATED 8 5 6
CTNND1 WILD-TYPE 71 80 77
'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.3

Table S459.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CTNND1 MUTATED 1 1 1 3 8 2 3
CTNND1 WILD-TYPE 43 40 16 30 27 29 43

Figure S118.  Get High-res Image Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S460.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CTNND1 MUTATED 6 5 7
CTNND1 WILD-TYPE 63 74 85
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.64

Table S461.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CTNND1 MUTATED 9 1 6 2
CTNND1 WILD-TYPE 64 42 73 43
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.64

Table S462.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CTNND1 MUTATED 2 3 3
CTNND1 WILD-TYPE 27 16 61
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.88

Table S463.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CTNND1 MUTATED 3 2 3
CTNND1 WILD-TYPE 30 46 28
'GFAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.59

Table S464.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
GFAP MUTATED 0 7 0 0 2
GFAP WILD-TYPE 56 145 11 5 16
'GFAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.81

Table S465.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
GFAP MUTATED 2 0 3
GFAP WILD-TYPE 41 39 50
'GFAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.73

Table S466.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
GFAP MUTATED 4 2 1 0 0 1
GFAP WILD-TYPE 35 34 36 10 40 23
'GFAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.97

Table S467.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
GFAP MUTATED 2 4 1 1
GFAP WILD-TYPE 63 60 39 16
'GFAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.4

Table S468.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
GFAP MUTATED 4 5 0
GFAP WILD-TYPE 75 80 83
'GFAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00724 (Fisher's exact test), Q value = 0.11

Table S469.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
GFAP MUTATED 0 0 1 4 3 1 0
GFAP WILD-TYPE 44 41 16 29 32 30 46

Figure S119.  Get High-res Image Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GFAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.77

Table S470.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
GFAP MUTATED 2 5 2
GFAP WILD-TYPE 67 74 90
'GFAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.21

Table S471.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
GFAP MUTATED 7 1 1 0
GFAP WILD-TYPE 66 42 78 45

Figure S120.  Get High-res Image Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PPP2R1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.41

Table S472.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PPP2R1A MUTATED 3 5 0 0
PPP2R1A WILD-TYPE 9 13 11 10
'PPP2R1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0559 (Fisher's exact test), Q value = 0.36

Table S473.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PPP2R1A MUTATED 4 2 0 2 0
PPP2R1A WILD-TYPE 8 8 7 5 15
'PPP2R1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.38

Table S474.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PPP2R1A MUTATED 12 11 1 0 1
PPP2R1A WILD-TYPE 44 141 10 5 17
'PPP2R1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.17

Table S475.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PPP2R1A MUTATED 10 1 5
PPP2R1A WILD-TYPE 33 38 48

Figure S121.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PPP2R1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.59

Table S476.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PPP2R1A MUTATED 3 7 2 0 2 4
PPP2R1A WILD-TYPE 36 29 35 10 38 20
'PPP2R1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S477.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PPP2R1A MUTATED 8 5 4 1
PPP2R1A WILD-TYPE 57 59 36 16
'PPP2R1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00204 (Fisher's exact test), Q value = 0.05

Table S478.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PPP2R1A MUTATED 17 6 4
PPP2R1A WILD-TYPE 62 79 79

Figure S122.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PPP2R1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.17

Table S479.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PPP2R1A MUTATED 12 2 2 4 4 1 2
PPP2R1A WILD-TYPE 32 39 15 29 31 30 44

Figure S123.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00955 (Fisher's exact test), Q value = 0.14

Table S480.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PPP2R1A MUTATED 14 6 5
PPP2R1A WILD-TYPE 55 73 87

Figure S124.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.021

Table S481.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PPP2R1A MUTATED 6 2 4 13
PPP2R1A WILD-TYPE 67 41 75 32

Figure S125.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.16

Table S482.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
PPP2R1A MUTATED 8 4 4
PPP2R1A WILD-TYPE 21 15 60

Figure S126.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.27

Table S483.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
PPP2R1A MUTATED 9 3 4
PPP2R1A WILD-TYPE 24 45 27

Figure S127.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C9ORF102 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.88

Table S484.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C9ORF102 MUTATED 2 2 0 0
C9ORF102 WILD-TYPE 10 16 11 10
'C9ORF102 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.66

Table S485.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C9ORF102 MUTATED 2 0 1 1 0
C9ORF102 WILD-TYPE 10 10 6 6 15
'C9ORF102 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.41

Table S486.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
C9ORF102 MUTATED 0 14 0 0 2
C9ORF102 WILD-TYPE 56 138 11 5 16
'C9ORF102 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.95

Table S487.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C9ORF102 MUTATED 2 1 4
C9ORF102 WILD-TYPE 41 38 49
'C9ORF102 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S488.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C9ORF102 MUTATED 4 4 2 1 2 1
C9ORF102 WILD-TYPE 35 32 35 9 38 23
'C9ORF102 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S489.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C9ORF102 MUTATED 4 6 3 1
C9ORF102 WILD-TYPE 61 58 37 16
'C9ORF102 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.54

Table S490.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
C9ORF102 MUTATED 6 8 2
C9ORF102 WILD-TYPE 73 77 81
'C9ORF102 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.006

Table S491.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
C9ORF102 MUTATED 0 1 1 7 6 0 1
C9ORF102 WILD-TYPE 44 40 16 26 29 31 45

Figure S128.  Get High-res Image Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.68

Table S492.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
C9ORF102 MUTATED 3 8 4
C9ORF102 WILD-TYPE 66 71 88
'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.73

Table S493.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
C9ORF102 MUTATED 8 2 3 2
C9ORF102 WILD-TYPE 65 41 76 43
'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.58

Table S494.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
C9ORF102 MUTATED 0 2 2
C9ORF102 WILD-TYPE 29 17 62
'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S495.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
C9ORF102 MUTATED 1 1 2
C9ORF102 WILD-TYPE 32 47 29
'EIF4A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.79

Table S496.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
EIF4A2 MUTATED 0 6 0 0 1
EIF4A2 WILD-TYPE 56 146 11 5 17
'EIF4A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S497.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EIF4A2 MUTATED 1 0 2
EIF4A2 WILD-TYPE 42 39 51
'EIF4A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 0.98

Table S498.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EIF4A2 MUTATED 2 1 1 1 2 0
EIF4A2 WILD-TYPE 37 35 36 9 38 24
'EIF4A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.88

Table S499.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EIF4A2 MUTATED 1 4 2 0
EIF4A2 WILD-TYPE 64 60 38 17
'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.34

Table S500.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
EIF4A2 MUTATED 2 5 0
EIF4A2 WILD-TYPE 77 80 83
'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.54

Table S501.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
EIF4A2 MUTATED 0 2 1 2 2 0 0
EIF4A2 WILD-TYPE 44 39 16 31 33 31 46
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.75

Table S502.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
EIF4A2 MUTATED 2 4 1
EIF4A2 WILD-TYPE 67 75 91
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.51

Table S503.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
EIF4A2 MUTATED 4 2 0 1
EIF4A2 WILD-TYPE 69 41 79 44
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.77

Table S504.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
EIF4A2 MUTATED 1 1 1
EIF4A2 WILD-TYPE 28 18 63
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S505.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
EIF4A2 MUTATED 1 1 1
EIF4A2 WILD-TYPE 32 47 30
'ZNF471 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.97

Table S506.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF471 MUTATED 2 1 1 0
ZNF471 WILD-TYPE 10 17 10 10
'ZNF471 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0908 (Fisher's exact test), Q value = 0.44

Table S507.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF471 MUTATED 1 0 2 1 0
ZNF471 WILD-TYPE 11 10 5 6 15
'ZNF471 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.49

Table S508.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF471 MUTATED 0 14 0 0 1
ZNF471 WILD-TYPE 56 138 11 5 17
'ZNF471 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.89

Table S509.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF471 MUTATED 1 2 4
ZNF471 WILD-TYPE 42 37 49
'ZNF471 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.9

Table S510.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF471 MUTATED 4 4 2 1 1 1
ZNF471 WILD-TYPE 35 32 35 9 39 23
'ZNF471 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S511.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF471 MUTATED 6 3 3 1
ZNF471 WILD-TYPE 59 61 37 16
'ZNF471 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.79

Table S512.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF471 MUTATED 5 7 3
ZNF471 WILD-TYPE 74 78 80
'ZNF471 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0036

Table S513.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF471 MUTATED 0 0 0 6 7 1 1
ZNF471 WILD-TYPE 44 41 17 27 28 30 45

Figure S129.  Get High-res Image Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF471 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.59

Table S514.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF471 MUTATED 3 8 3
ZNF471 WILD-TYPE 66 71 89
'ZNF471 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.62

Table S515.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF471 MUTATED 8 2 3 1
ZNF471 WILD-TYPE 65 41 76 44
'ZNF471 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S516.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF471 MUTATED 1 1 3
ZNF471 WILD-TYPE 28 18 61
'ZNF471 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.73

Table S517.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF471 MUTATED 1 1 3
ZNF471 WILD-TYPE 32 47 28
'CDK17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.32

Table S518.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CDK17 MUTATED 3 0 2 0
CDK17 WILD-TYPE 9 18 9 10

Figure S130.  Get High-res Image Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDK17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00206 (Fisher's exact test), Q value = 0.05

Table S519.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CDK17 MUTATED 0 0 3 2 0
CDK17 WILD-TYPE 12 10 4 5 15

Figure S131.  Get High-res Image Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDK17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.59

Table S520.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CDK17 MUTATED 1 10 0 0 3
CDK17 WILD-TYPE 55 142 11 5 15
'CDK17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 0.37

Table S521.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CDK17 MUTATED 0 1 5
CDK17 WILD-TYPE 43 38 48
'CDK17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S522.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CDK17 MUTATED 4 1 3 0 2 1
CDK17 WILD-TYPE 35 35 34 10 38 23
'CDK17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S523.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CDK17 MUTATED 4 4 3 0
CDK17 WILD-TYPE 61 60 37 17
'CDK17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S524.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CDK17 MUTATED 5 5 4
CDK17 WILD-TYPE 74 80 79
'CDK17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 0.25

Table S525.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CDK17 MUTATED 1 1 2 5 2 3 0
CDK17 WILD-TYPE 43 40 15 28 33 28 46

Figure S132.  Get High-res Image Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDK17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.79

Table S526.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CDK17 MUTATED 3 7 4
CDK17 WILD-TYPE 66 72 88
'CDK17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.92

Table S527.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CDK17 MUTATED 6 1 4 3
CDK17 WILD-TYPE 67 42 75 42
'CDK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.99

Table S528.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CDK17 MUTATED 2 0 4
CDK17 WILD-TYPE 27 19 60
'CDK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.026 (Fisher's exact test), Q value = 0.24

Table S529.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CDK17 MUTATED 2 0 4
CDK17 WILD-TYPE 31 48 27

Figure S133.  Get High-res Image Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SIN3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.25

Table S530.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SIN3A MUTATED 0 16 1 0 3
SIN3A WILD-TYPE 56 136 10 5 15

Figure S134.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SIN3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.73

Table S531.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SIN3A MUTATED 4 2 8
SIN3A WILD-TYPE 39 37 45
'SIN3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00379 (Fisher's exact test), Q value = 0.074

Table S532.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SIN3A MUTATED 3 9 3 2 0 1
SIN3A WILD-TYPE 36 27 34 8 40 23

Figure S135.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SIN3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.85

Table S533.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SIN3A MUTATED 7 4 6 1
SIN3A WILD-TYPE 58 60 34 16
'SIN3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00963 (Fisher's exact test), Q value = 0.14

Table S534.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SIN3A MUTATED 6 13 2
SIN3A WILD-TYPE 73 72 81

Figure S136.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SIN3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0052

Table S535.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SIN3A MUTATED 0 3 1 5 10 1 1
SIN3A WILD-TYPE 44 38 16 28 25 30 45

Figure S137.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SIN3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.32

Table S536.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SIN3A MUTATED 8 10 3
SIN3A WILD-TYPE 61 69 89

Figure S138.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SIN3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0064

Table S537.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SIN3A MUTATED 15 2 1 3
SIN3A WILD-TYPE 58 41 78 42

Figure S139.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SIN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.85

Table S538.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
SIN3A MUTATED 4 1 4
SIN3A WILD-TYPE 25 18 60
'SIN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.79

Table S539.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
SIN3A MUTATED 4 2 3
SIN3A WILD-TYPE 29 46 28
'ZNF485 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S540.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF485 MUTATED 1 1 1 0
ZNF485 WILD-TYPE 11 17 10 10
'ZNF485 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.41

Table S541.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF485 MUTATED 1 0 2 0 0
ZNF485 WILD-TYPE 11 10 5 7 15
'ZNF485 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.76

Table S542.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF485 MUTATED 0 9 0 0 0
ZNF485 WILD-TYPE 56 143 11 5 18
'ZNF485 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S543.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF485 MUTATED 1 1 2
ZNF485 WILD-TYPE 42 38 51
'ZNF485 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.76

Table S544.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF485 MUTATED 2 3 0 1 1 1
ZNF485 WILD-TYPE 37 33 37 9 39 23
'ZNF485 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S545.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF485 MUTATED 4 2 1 1
ZNF485 WILD-TYPE 61 62 39 16
'ZNF485 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.95

Table S546.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF485 MUTATED 4 3 2
ZNF485 WILD-TYPE 75 82 81
'ZNF485 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.79

Table S547.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF485 MUTATED 1 0 1 2 3 1 1
ZNF485 WILD-TYPE 43 41 16 31 32 30 45
'ZNF485 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.52

Table S548.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF485 MUTATED 1 6 2
ZNF485 WILD-TYPE 68 73 90
'ZNF485 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.7

Table S549.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF485 MUTATED 5 1 1 2
ZNF485 WILD-TYPE 68 42 78 43
'RSBN1L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.52

Table S550.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RSBN1L MUTATED 3 1 0 0
RSBN1L WILD-TYPE 9 17 11 10
'RSBN1L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0919 (Fisher's exact test), Q value = 0.44

Table S551.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RSBN1L MUTATED 1 0 1 2 0
RSBN1L WILD-TYPE 11 10 6 5 15
'RSBN1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.58

Table S552.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RSBN1L MUTATED 1 8 0 0 3
RSBN1L WILD-TYPE 55 144 11 5 15
'RSBN1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.89

Table S553.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RSBN1L MUTATED 2 0 2
RSBN1L WILD-TYPE 41 39 51
'RSBN1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00723 (Fisher's exact test), Q value = 0.11

Table S554.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RSBN1L MUTATED 4 3 0 3 1 0
RSBN1L WILD-TYPE 35 33 37 7 39 24

Figure S140.  Get High-res Image Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RSBN1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S555.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RSBN1L MUTATED 5 3 3 0
RSBN1L WILD-TYPE 60 61 37 17
'RSBN1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.71

Table S556.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RSBN1L MUTATED 6 4 2
RSBN1L WILD-TYPE 73 81 81
'RSBN1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0045 (Fisher's exact test), Q value = 0.082

Table S557.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RSBN1L MUTATED 0 0 1 3 6 1 1
RSBN1L WILD-TYPE 44 41 16 30 29 30 45

Figure S141.  Get High-res Image Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RSBN1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.76

Table S558.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RSBN1L MUTATED 4 5 2
RSBN1L WILD-TYPE 65 74 90
'RSBN1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S559.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RSBN1L MUTATED 5 1 3 2
RSBN1L WILD-TYPE 68 42 76 43
'CUX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S560.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CUX1 MUTATED 1 2 0 1
CUX1 WILD-TYPE 11 16 11 9
'CUX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.91

Table S561.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CUX1 MUTATED 2 0 0 1 1
CUX1 WILD-TYPE 10 10 7 6 14
'CUX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00936 (Fisher's exact test), Q value = 0.13

Table S562.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CUX1 MUTATED 0 20 0 0 3
CUX1 WILD-TYPE 56 132 11 5 15

Figure S142.  Get High-res Image Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CUX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.69

Table S563.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CUX1 MUTATED 3 2 8
CUX1 WILD-TYPE 40 37 45
'CUX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S564.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CUX1 MUTATED 4 4 4 1 5 1
CUX1 WILD-TYPE 35 32 33 9 35 23
'CUX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.72

Table S565.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CUX1 MUTATED 4 7 7 1
CUX1 WILD-TYPE 61 57 33 16
'CUX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.72

Table S566.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CUX1 MUTATED 7 11 5
CUX1 WILD-TYPE 72 74 78
'CUX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.19

Table S567.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CUX1 MUTATED 1 2 2 7 7 2 2
CUX1 WILD-TYPE 43 39 15 26 28 29 44

Figure S143.  Get High-res Image Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CUX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S568.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CUX1 MUTATED 5 9 7
CUX1 WILD-TYPE 64 70 85
'CUX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.89

Table S569.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CUX1 MUTATED 9 2 7 3
CUX1 WILD-TYPE 64 41 72 42
'CUX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S570.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CUX1 MUTATED 3 2 5
CUX1 WILD-TYPE 26 17 59
'CUX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.95

Table S571.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CUX1 MUTATED 4 3 3
CUX1 WILD-TYPE 29 45 28
'BCOR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S572.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
BCOR MUTATED 1 2 0 0
BCOR WILD-TYPE 11 16 11 10
'BCOR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.6

Table S573.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
BCOR MUTATED 2 0 0 1 0
BCOR WILD-TYPE 10 10 7 6 15
'BCOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00171 (Fisher's exact test), Q value = 0.045

Table S574.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
BCOR MUTATED 0 25 0 1 3
BCOR WILD-TYPE 56 127 11 4 15

Figure S144.  Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.18

Table S575.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
BCOR MUTATED 1 3 11
BCOR WILD-TYPE 42 36 42

Figure S145.  Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BCOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.87

Table S576.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
BCOR MUTATED 5 6 3 3 5 2
BCOR WILD-TYPE 34 30 34 7 35 22
'BCOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.96

Table S577.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
BCOR MUTATED 9 6 7 2
BCOR WILD-TYPE 56 58 33 15
'BCOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.27

Table S578.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
BCOR MUTATED 6 17 7
BCOR WILD-TYPE 73 68 76

Figure S146.  Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00483 (Fisher's exact test), Q value = 0.087

Table S579.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
BCOR MUTATED 0 6 2 8 8 2 4
BCOR WILD-TYPE 44 35 15 25 27 29 42

Figure S147.  Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S580.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
BCOR MUTATED 9 10 10
BCOR WILD-TYPE 60 69 82
'BCOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.65

Table S581.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
BCOR MUTATED 13 6 6 4
BCOR WILD-TYPE 60 37 73 41
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.72

Table S582.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
BCOR MUTATED 2 4 6
BCOR WILD-TYPE 27 15 58
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S583.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
BCOR MUTATED 3 6 3
BCOR WILD-TYPE 30 42 28
'WDR45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S584.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
WDR45 MUTATED 1 9 0 0 1
WDR45 WILD-TYPE 55 143 11 5 17
'WDR45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.91

Table S585.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
WDR45 MUTATED 1 3 2
WDR45 WILD-TYPE 42 36 51
'WDR45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.3

Table S586.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
WDR45 MUTATED 4 3 0 2 1 0
WDR45 WILD-TYPE 35 33 37 8 39 24

Figure S148.  Get High-res Image Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'WDR45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S587.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
WDR45 MUTATED 3 5 2 0
WDR45 WILD-TYPE 62 59 38 17
'WDR45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S588.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
WDR45 MUTATED 4 3 4
WDR45 WILD-TYPE 75 82 79
'WDR45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.65

Table S589.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
WDR45 MUTATED 1 0 0 4 2 2 2
WDR45 WILD-TYPE 43 41 17 29 33 29 44
'WDR45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.63

Table S590.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
WDR45 MUTATED 1 6 4
WDR45 WILD-TYPE 68 73 88
'WDR45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.6

Table S591.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
WDR45 MUTATED 6 0 4 1
WDR45 WILD-TYPE 67 43 75 44
'WDR45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.58

Table S592.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
WDR45 MUTATED 0 2 2
WDR45 WILD-TYPE 29 17 62
'WDR45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.71

Table S593.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
WDR45 MUTATED 0 2 2
WDR45 WILD-TYPE 33 46 29
'CAB39L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.77

Table S594.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CAB39L MUTATED 0 7 0 0 1
CAB39L WILD-TYPE 56 145 11 5 17
'CAB39L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.45

Table S595.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CAB39L MUTATED 0 2 0 1 3 0
CAB39L WILD-TYPE 39 34 37 9 37 24
'CAB39L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S596.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CAB39L MUTATED 3 1 2 0
CAB39L WILD-TYPE 62 63 38 17
'CAB39L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S597.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CAB39L MUTATED 2 4 2
CAB39L WILD-TYPE 77 81 81
'CAB39L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.2

Table S598.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CAB39L MUTATED 0 3 0 0 4 1 0
CAB39L WILD-TYPE 44 38 17 33 31 30 46

Figure S149.  Get High-res Image Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.92

Table S599.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CAB39L MUTATED 2 4 2
CAB39L WILD-TYPE 67 75 90
'CAB39L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.75

Table S600.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CAB39L MUTATED 3 3 1 1
CAB39L WILD-TYPE 70 40 78 44
'TAB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.52

Table S601.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TAB3 MUTATED 3 1 0 0
TAB3 WILD-TYPE 9 17 11 10
'TAB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0925 (Fisher's exact test), Q value = 0.44

Table S602.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TAB3 MUTATED 1 0 1 2 0
TAB3 WILD-TYPE 11 10 6 5 15
'TAB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.32

Table S603.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TAB3 MUTATED 0 17 0 0 1
TAB3 WILD-TYPE 56 135 11 5 17

Figure S150.  Get High-res Image Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.69

Table S604.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TAB3 MUTATED 2 2 7
TAB3 WILD-TYPE 41 37 46
'TAB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.97

Table S605.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TAB3 MUTATED 4 2 3 1 1 1
TAB3 WILD-TYPE 35 34 34 9 39 23
'TAB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.81

Table S606.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TAB3 MUTATED 2 5 4 1
TAB3 WILD-TYPE 63 59 36 16
'TAB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0501 (Fisher's exact test), Q value = 0.34

Table S607.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TAB3 MUTATED 4 11 3
TAB3 WILD-TYPE 75 74 80
'TAB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S608.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TAB3 MUTATED 0 1 1 10 4 0 2
TAB3 WILD-TYPE 44 40 16 23 31 31 44

Figure S151.  Get High-res Image Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.82

Table S609.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TAB3 MUTATED 3 7 8
TAB3 WILD-TYPE 66 72 84
'TAB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.77

Table S610.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TAB3 MUTATED 9 2 5 2
TAB3 WILD-TYPE 64 41 74 43
'TAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.41

Table S611.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
TAB3 MUTATED 0 3 3
TAB3 WILD-TYPE 29 16 61
'TAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.85

Table S612.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
TAB3 MUTATED 1 2 3
TAB3 WILD-TYPE 32 46 28
'OAZ3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.76

Table S613.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
OAZ3 MUTATED 1 5 0 0 2
OAZ3 WILD-TYPE 55 147 11 5 16
'OAZ3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.89

Table S614.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
OAZ3 MUTATED 2 0 2
OAZ3 WILD-TYPE 41 39 51
'OAZ3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.79

Table S615.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
OAZ3 MUTATED 3 2 0 0 1 0
OAZ3 WILD-TYPE 36 34 37 10 39 24
'OAZ3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.76

Table S616.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
OAZ3 MUTATED 2 4 0 0
OAZ3 WILD-TYPE 63 60 40 17
'OAZ3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.34

Table S617.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
OAZ3 MUTATED 5 3 0
OAZ3 WILD-TYPE 74 82 83
'OAZ3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00267 (Fisher's exact test), Q value = 0.057

Table S618.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
OAZ3 MUTATED 0 0 1 3 4 0 0
OAZ3 WILD-TYPE 44 41 16 30 31 31 46

Figure S152.  Get High-res Image Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OAZ3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.59

Table S619.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
OAZ3 MUTATED 2 5 1
OAZ3 WILD-TYPE 67 74 91
'OAZ3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.86

Table S620.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
OAZ3 MUTATED 4 1 1 2
OAZ3 WILD-TYPE 69 42 78 43
'AHCYL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.79

Table S621.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
AHCYL1 MUTATED 0 5 0 0 1
AHCYL1 WILD-TYPE 56 147 11 5 17
'AHCYL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S622.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
AHCYL1 MUTATED 1 1 1
AHCYL1 WILD-TYPE 42 38 52
'AHCYL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.86

Table S623.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
AHCYL1 MUTATED 3 0 1 0 1 0
AHCYL1 WILD-TYPE 36 36 36 10 39 24
'AHCYL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S624.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
AHCYL1 MUTATED 1 3 1 0
AHCYL1 WILD-TYPE 64 61 39 17
'AHCYL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S625.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
AHCYL1 MUTATED 2 2 2
AHCYL1 WILD-TYPE 77 83 81
'AHCYL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.16

Table S626.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
AHCYL1 MUTATED 0 0 0 4 1 1 0
AHCYL1 WILD-TYPE 44 41 17 29 34 30 46

Figure S153.  Get High-res Image Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AHCYL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.97

Table S627.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
AHCYL1 MUTATED 1 3 2
AHCYL1 WILD-TYPE 68 76 90
'AHCYL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S628.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
AHCYL1 MUTATED 2 1 3 0
AHCYL1 WILD-TYPE 71 42 76 45
'ATM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.15

Table S629.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ATM MUTATED 6 2 1 0
ATM WILD-TYPE 6 16 10 10

Figure S154.  Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0087

Table S630.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ATM MUTATED 2 0 2 5 0
ATM WILD-TYPE 10 10 5 2 15

Figure S155.  Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0051 (Fisher's exact test), Q value = 0.09

Table S631.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ATM MUTATED 0 22 1 1 3
ATM WILD-TYPE 56 130 10 4 15

Figure S156.  Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S632.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ATM MUTATED 4 2 6
ATM WILD-TYPE 39 37 47
'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.59

Table S633.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ATM MUTATED 6 5 5 3 5 0
ATM WILD-TYPE 33 31 32 7 35 24
'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.73

Table S634.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ATM MUTATED 8 9 7 0
ATM WILD-TYPE 57 55 33 17
'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S635.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ATM MUTATED 11 10 8
ATM WILD-TYPE 68 75 75
'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00059 (Fisher's exact test), Q value = 0.02

Table S636.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ATM MUTATED 1 2 3 8 10 3 2
ATM WILD-TYPE 43 39 14 25 25 28 44

Figure S157.  Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.88

Table S637.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ATM MUTATED 7 12 9
ATM WILD-TYPE 62 67 83
'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.72

Table S638.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ATM MUTATED 12 2 9 5
ATM WILD-TYPE 61 41 70 40
'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.57

Table S639.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ATM MUTATED 5 3 4
ATM WILD-TYPE 24 16 60
'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.51

Table S640.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ATM MUTATED 5 2 5
ATM WILD-TYPE 28 46 26
'MSH4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.97

Table S641.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MSH4 MUTATED 2 1 1 0
MSH4 WILD-TYPE 10 17 10 10
'MSH4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 0.44

Table S642.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MSH4 MUTATED 1 0 2 1 0
MSH4 WILD-TYPE 11 10 5 6 15
'MSH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 0.44

Table S643.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MSH4 MUTATED 0 13 0 0 2
MSH4 WILD-TYPE 56 139 11 5 16
'MSH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S644.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MSH4 MUTATED 2 1 3
MSH4 WILD-TYPE 41 38 50
'MSH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.79

Table S645.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MSH4 MUTATED 4 3 1 2 2 1
MSH4 WILD-TYPE 35 33 36 8 38 23
'MSH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 0.99

Table S646.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MSH4 MUTATED 3 5 4 1
MSH4 WILD-TYPE 62 59 36 16
'MSH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S647.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MSH4 MUTATED 5 6 4
MSH4 WILD-TYPE 74 79 79
'MSH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 0.25

Table S648.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MSH4 MUTATED 0 1 1 5 5 1 2
MSH4 WILD-TYPE 44 40 16 28 30 30 44

Figure S158.  Get High-res Image Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MSH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.79

Table S649.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MSH4 MUTATED 3 7 4
MSH4 WILD-TYPE 66 72 88
'MSH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.42

Table S650.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MSH4 MUTATED 8 2 4 0
MSH4 WILD-TYPE 65 41 75 45
'MSH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.58

Table S651.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MSH4 MUTATED 0 2 2
MSH4 WILD-TYPE 29 17 62
'MSH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S652.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MSH4 MUTATED 1 1 2
MSH4 WILD-TYPE 32 47 29
'FAM65B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.31

Table S653.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
FAM65B MUTATED 0 13 0 0 3
FAM65B WILD-TYPE 56 139 11 5 15

Figure S159.  Get High-res Image Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM65B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.73

Table S654.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FAM65B MUTATED 3 1 6
FAM65B WILD-TYPE 40 38 47
'FAM65B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.6

Table S655.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FAM65B MUTATED 3 4 3 2 1 0
FAM65B WILD-TYPE 36 32 34 8 39 24
'FAM65B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.96

Table S656.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FAM65B MUTATED 4 5 4 0
FAM65B WILD-TYPE 61 59 36 17
'FAM65B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.91

Table S657.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
FAM65B MUTATED 7 5 4
FAM65B WILD-TYPE 72 80 79
'FAM65B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00725 (Fisher's exact test), Q value = 0.11

Table S658.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
FAM65B MUTATED 0 1 2 4 6 0 3
FAM65B WILD-TYPE 44 40 15 29 29 31 43

Figure S160.  Get High-res Image Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM65B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S659.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
FAM65B MUTATED 5 5 5
FAM65B WILD-TYPE 64 74 87
'FAM65B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.49

Table S660.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
FAM65B MUTATED 8 0 5 2
FAM65B WILD-TYPE 65 43 74 43
'FAM65B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.92

Table S661.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
FAM65B MUTATED 1 2 5
FAM65B WILD-TYPE 28 17 59
'FAM65B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.73

Table S662.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
FAM65B MUTATED 2 2 4
FAM65B WILD-TYPE 31 46 27
'FN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.58

Table S663.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
FN1 MUTATED 3 3 0 0
FN1 WILD-TYPE 9 15 11 10
'FN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0612 (Fisher's exact test), Q value = 0.38

Table S664.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
FN1 MUTATED 3 0 1 2 0
FN1 WILD-TYPE 9 10 6 5 15
'FN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.17

Table S665.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
FN1 MUTATED 0 21 1 0 2
FN1 WILD-TYPE 56 131 10 5 16

Figure S161.  Get High-res Image Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.79

Table S666.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FN1 MUTATED 3 2 7
FN1 WILD-TYPE 40 37 46
'FN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.71

Table S667.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FN1 MUTATED 7 4 3 2 2 1
FN1 WILD-TYPE 32 32 34 8 38 23
'FN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S668.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FN1 MUTATED 6 8 4 1
FN1 WILD-TYPE 59 56 36 16
'FN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.6

Table S669.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
FN1 MUTATED 7 12 5
FN1 WILD-TYPE 72 73 78
'FN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S670.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
FN1 MUTATED 0 0 2 10 8 2 2
FN1 WILD-TYPE 44 41 15 23 27 29 44

Figure S162.  Get High-res Image Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.76

Table S671.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
FN1 MUTATED 4 10 9
FN1 WILD-TYPE 65 69 83
'FN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.15

Table S672.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
FN1 MUTATED 14 1 6 2
FN1 WILD-TYPE 59 42 73 43

Figure S163.  Get High-res Image Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.72

Table S673.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
FN1 MUTATED 1 3 6
FN1 WILD-TYPE 28 16 58
'FN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.47

Table S674.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
FN1 MUTATED 2 2 6
FN1 WILD-TYPE 31 46 25
'JAKMIP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.76

Table S675.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
JAKMIP2 MUTATED 2 1 0 0
JAKMIP2 WILD-TYPE 10 17 11 10
'JAKMIP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.69

Table S676.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
JAKMIP2 MUTATED 1 0 1 1 0
JAKMIP2 WILD-TYPE 11 10 6 6 15
'JAKMIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.51

Table S677.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
JAKMIP2 MUTATED 0 9 1 0 2
JAKMIP2 WILD-TYPE 56 143 10 5 16
'JAKMIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.89

Table S678.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
JAKMIP2 MUTATED 2 0 2
JAKMIP2 WILD-TYPE 41 39 51
'JAKMIP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.28

Table S679.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
JAKMIP2 MUTATED 3 4 0 2 1 0
JAKMIP2 WILD-TYPE 36 32 37 8 39 24

Figure S164.  Get High-res Image Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'JAKMIP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S680.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
JAKMIP2 MUTATED 3 5 2 0
JAKMIP2 WILD-TYPE 62 59 38 17
'JAKMIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.4

Table S681.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
JAKMIP2 MUTATED 7 4 1
JAKMIP2 WILD-TYPE 72 81 82
'JAKMIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00068 (Fisher's exact test), Q value = 0.022

Table S682.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
JAKMIP2 MUTATED 0 0 2 3 6 0 1
JAKMIP2 WILD-TYPE 44 41 15 30 29 31 45

Figure S165.  Get High-res Image Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'JAKMIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.44

Table S683.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
JAKMIP2 MUTATED 4 6 1
JAKMIP2 WILD-TYPE 65 73 91
'JAKMIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.57

Table S684.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
JAKMIP2 MUTATED 7 1 2 1
JAKMIP2 WILD-TYPE 66 42 77 44
'WBP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.77

Table S685.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
WBP4 MUTATED 0 7 0 0 1
WBP4 WILD-TYPE 56 145 11 5 17
'WBP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.48

Table S686.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
WBP4 MUTATED 1 0 5
WBP4 WILD-TYPE 42 39 48
'WBP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.69

Table S687.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
WBP4 MUTATED 1 4 2 0 0 1
WBP4 WILD-TYPE 38 32 35 10 40 23
'WBP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S688.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
WBP4 MUTATED 3 2 2 1
WBP4 WILD-TYPE 62 62 38 16
'WBP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.76

Table S689.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
WBP4 MUTATED 4 3 1
WBP4 WILD-TYPE 75 82 82
'WBP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00086 (Fisher's exact test), Q value = 0.027

Table S690.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
WBP4 MUTATED 0 0 0 4 4 0 0
WBP4 WILD-TYPE 44 41 17 29 31 31 46

Figure S166.  Get High-res Image Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WBP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0771 (Fisher's exact test), Q value = 0.41

Table S691.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
WBP4 MUTATED 0 5 2
WBP4 WILD-TYPE 69 74 90
'WBP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.54

Table S692.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
WBP4 MUTATED 5 0 1 1
WBP4 WILD-TYPE 68 43 78 44
'WBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.89

Table S693.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
WBP4 MUTATED 0 1 2
WBP4 WILD-TYPE 29 18 62
'WBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.49

Table S694.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
WBP4 MUTATED 1 0 2
WBP4 WILD-TYPE 32 48 29
'RASA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.76

Table S695.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RASA1 MUTATED 3 2 1 0
RASA1 WILD-TYPE 9 16 10 10
'RASA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.76

Table S696.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RASA1 MUTATED 2 0 1 2 1
RASA1 WILD-TYPE 10 10 6 5 14
'RASA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.42

Table S697.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RASA1 MUTATED 1 20 0 0 1
RASA1 WILD-TYPE 55 132 11 5 17
'RASA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.79

Table S698.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RASA1 MUTATED 3 1 5
RASA1 WILD-TYPE 40 38 48
'RASA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.79

Table S699.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RASA1 MUTATED 4 3 3 3 4 1
RASA1 WILD-TYPE 35 33 34 7 36 23
'RASA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S700.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RASA1 MUTATED 5 7 5 1
RASA1 WILD-TYPE 60 57 35 16
'RASA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S701.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RASA1 MUTATED 7 9 6
RASA1 WILD-TYPE 72 76 77
'RASA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.58

Table S702.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RASA1 MUTATED 2 2 2 7 4 1 4
RASA1 WILD-TYPE 42 39 15 26 31 30 42
'RASA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.82

Table S703.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RASA1 MUTATED 4 9 8
RASA1 WILD-TYPE 65 70 84
'RASA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.95

Table S704.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RASA1 MUTATED 8 2 6 5
RASA1 WILD-TYPE 65 41 73 40
'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.78

Table S705.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
RASA1 MUTATED 3 2 3
RASA1 WILD-TYPE 26 17 61
'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.57

Table S706.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
RASA1 MUTATED 3 1 4
RASA1 WILD-TYPE 30 47 27
'ALPK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.26

Table S707.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ALPK2 MUTATED 4 1 0 0
ALPK2 WILD-TYPE 8 17 11 10

Figure S167.  Get High-res Image Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ALPK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.18

Table S708.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ALPK2 MUTATED 1 0 1 3 0
ALPK2 WILD-TYPE 11 10 6 4 15

Figure S168.  Get High-res Image Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.27

Table S709.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ALPK2 MUTATED 0 18 0 0 1
ALPK2 WILD-TYPE 56 134 11 5 17

Figure S169.  Get High-res Image Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.79

Table S710.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ALPK2 MUTATED 3 1 5
ALPK2 WILD-TYPE 40 38 48
'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S711.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ALPK2 MUTATED 4 3 3 2 4 1
ALPK2 WILD-TYPE 35 33 34 8 36 23
'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.85

Table S712.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ALPK2 MUTATED 4 6 6 1
ALPK2 WILD-TYPE 61 58 34 16
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.66

Table S713.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ALPK2 MUTATED 5 10 4
ALPK2 WILD-TYPE 74 75 79
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00358 (Fisher's exact test), Q value = 0.071

Table S714.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ALPK2 MUTATED 0 2 3 7 4 2 1
ALPK2 WILD-TYPE 44 39 14 26 31 29 45

Figure S170.  Get High-res Image Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.92

Table S715.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ALPK2 MUTATED 4 8 7
ALPK2 WILD-TYPE 65 71 85
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.91

Table S716.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ALPK2 MUTATED 8 4 5 2
ALPK2 WILD-TYPE 65 39 74 43
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.77

Table S717.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ALPK2 MUTATED 3 2 3
ALPK2 WILD-TYPE 26 17 61
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.88

Table S718.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ALPK2 MUTATED 3 2 3
ALPK2 WILD-TYPE 30 46 28
'POLE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S719.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
POLE MUTATED 2 3 1 0
POLE WILD-TYPE 10 15 10 10
'POLE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0617 (Fisher's exact test), Q value = 0.38

Table S720.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
POLE MUTATED 3 0 2 1 0
POLE WILD-TYPE 9 10 5 6 15
'POLE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.29

Table S721.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
POLE MUTATED 1 23 0 0 2
POLE WILD-TYPE 55 129 11 5 16

Figure S171.  Get High-res Image Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.68

Table S722.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
POLE MUTATED 2 6 6
POLE WILD-TYPE 41 33 47
'POLE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.73

Table S723.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
POLE MUTATED 6 6 5 2 2 1
POLE WILD-TYPE 33 30 32 8 38 23
'POLE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S724.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
POLE MUTATED 9 8 4 1
POLE WILD-TYPE 56 56 36 16
'POLE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S725.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
POLE MUTATED 9 10 8
POLE WILD-TYPE 70 75 75
'POLE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.16

Table S726.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
POLE MUTATED 2 1 1 8 8 3 4
POLE WILD-TYPE 42 40 16 25 27 28 42

Figure S172.  Get High-res Image Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POLE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.93

Table S727.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
POLE MUTATED 6 11 9
POLE WILD-TYPE 63 68 83
'POLE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.55

Table S728.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
POLE MUTATED 13 2 7 4
POLE WILD-TYPE 60 41 72 41
'POLE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.58

Table S729.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
POLE MUTATED 2 4 4
POLE WILD-TYPE 27 15 60
'POLE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.88

Table S730.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
POLE MUTATED 3 3 4
POLE WILD-TYPE 30 45 27
'KIF20B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.69

Table S731.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
KIF20B MUTATED 3 1 1 0
KIF20B WILD-TYPE 9 17 10 10
'KIF20B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 0.32

Table S732.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
KIF20B MUTATED 1 0 2 2 0
KIF20B WILD-TYPE 11 10 5 5 15

Figure S173.  Get High-res Image Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIF20B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.22

Table S733.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
KIF20B MUTATED 0 19 0 0 2
KIF20B WILD-TYPE 56 133 11 5 16

Figure S174.  Get High-res Image Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF20B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S734.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
KIF20B MUTATED 3 3 6
KIF20B WILD-TYPE 40 36 47
'KIF20B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.86

Table S735.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
KIF20B MUTATED 5 5 4 1 1 2
KIF20B WILD-TYPE 34 31 33 9 39 22
'KIF20B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S736.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
KIF20B MUTATED 6 6 4 2
KIF20B WILD-TYPE 59 58 36 15
'KIF20B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.9

Table S737.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
KIF20B MUTATED 7 9 5
KIF20B WILD-TYPE 72 76 78
'KIF20B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0084

Table S738.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
KIF20B MUTATED 0 1 1 8 7 3 1
KIF20B WILD-TYPE 44 40 16 25 28 28 45

Figure S175.  Get High-res Image Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF20B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.85

Table S739.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
KIF20B MUTATED 5 9 6
KIF20B WILD-TYPE 64 70 86
'KIF20B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.051 (Fisher's exact test), Q value = 0.34

Table S740.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
KIF20B MUTATED 12 2 4 2
KIF20B WILD-TYPE 61 41 75 43
'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.69

Table S741.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
KIF20B MUTATED 1 3 4
KIF20B WILD-TYPE 28 16 60
'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.73

Table S742.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
KIF20B MUTATED 2 2 4
KIF20B WILD-TYPE 31 46 27
'C14ORF166B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.57

Table S743.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
C14ORF166B MUTATED 0 8 0 0 2
C14ORF166B WILD-TYPE 56 144 11 5 16
'C14ORF166B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.16

Table S744.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C14ORF166B MUTATED 0 0 5
C14ORF166B WILD-TYPE 43 39 48

Figure S176.  Get High-res Image Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C14ORF166B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.25

Table S745.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C14ORF166B MUTATED 0 3 2 2 0 1
C14ORF166B WILD-TYPE 39 33 35 8 40 23

Figure S177.  Get High-res Image Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C14ORF166B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.91

Table S746.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C14ORF166B MUTATED 2 2 3 1
C14ORF166B WILD-TYPE 63 62 37 16
'C14ORF166B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S747.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
C14ORF166B MUTATED 3 4 3
C14ORF166B WILD-TYPE 76 81 80
'C14ORF166B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00726 (Fisher's exact test), Q value = 0.11

Table S748.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
C14ORF166B MUTATED 0 0 0 3 5 0 2
C14ORF166B WILD-TYPE 44 41 17 30 30 31 44

Figure S178.  Get High-res Image Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.97

Table S749.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
C14ORF166B MUTATED 2 2 5
C14ORF166B WILD-TYPE 67 77 87
'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.52

Table S750.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
C14ORF166B MUTATED 5 0 4 0
C14ORF166B WILD-TYPE 68 43 75 45
'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S751.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
C14ORF166B MUTATED 0 0 3
C14ORF166B WILD-TYPE 29 19 61
'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.76

Table S752.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
C14ORF166B MUTATED 0 1 2
C14ORF166B WILD-TYPE 33 47 29
'SLC26A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.54

Table S753.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SLC26A8 MUTATED 0 10 0 0 2
SLC26A8 WILD-TYPE 56 142 11 5 16
'SLC26A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.95

Table S754.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SLC26A8 MUTATED 2 1 4
SLC26A8 WILD-TYPE 41 38 49
'SLC26A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.48

Table S755.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SLC26A8 MUTATED 4 4 2 1 0 0
SLC26A8 WILD-TYPE 35 32 35 9 40 24
'SLC26A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S756.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SLC26A8 MUTATED 4 4 3 0
SLC26A8 WILD-TYPE 61 60 37 17
'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.7

Table S757.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SLC26A8 MUTATED 6 4 2
SLC26A8 WILD-TYPE 73 81 81
'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.021

Table S758.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SLC26A8 MUTATED 0 0 1 4 6 0 1
SLC26A8 WILD-TYPE 44 41 16 29 29 31 45

Figure S179.  Get High-res Image Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.65

Table S759.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SLC26A8 MUTATED 4 6 2
SLC26A8 WILD-TYPE 65 73 90
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.88

Table S760.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SLC26A8 MUTATED 6 1 3 2
SLC26A8 WILD-TYPE 67 42 76 43
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.76

Table S761.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
SLC26A8 MUTATED 1 2 2
SLC26A8 WILD-TYPE 28 17 62
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.92

Table S762.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
SLC26A8 MUTATED 2 1 2
SLC26A8 WILD-TYPE 31 47 29
'ZNF334 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S763.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF334 MUTATED 1 1 1 0
ZNF334 WILD-TYPE 11 17 10 10
'ZNF334 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0807 (Fisher's exact test), Q value = 0.42

Table S764.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF334 MUTATED 1 0 2 0 0
ZNF334 WILD-TYPE 11 10 5 7 15
'ZNF334 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.71

Table S765.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF334 MUTATED 1 13 0 0 2
ZNF334 WILD-TYPE 55 139 11 5 16
'ZNF334 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.76

Table S766.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF334 MUTATED 4 1 6
ZNF334 WILD-TYPE 39 38 47
'ZNF334 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.73

Table S767.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF334 MUTATED 6 4 2 0 1 2
ZNF334 WILD-TYPE 33 32 35 10 39 22
'ZNF334 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.8

Table S768.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF334 MUTATED 6 6 1 2
ZNF334 WILD-TYPE 59 58 39 15
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.77

Table S769.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF334 MUTATED 8 4 5
ZNF334 WILD-TYPE 71 81 78
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.17

Table S770.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF334 MUTATED 1 0 2 5 5 3 1
ZNF334 WILD-TYPE 43 41 15 28 30 28 45

Figure S180.  Get High-res Image Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S771.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF334 MUTATED 4 6 6
ZNF334 WILD-TYPE 65 73 86
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.89

Table S772.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF334 MUTATED 7 1 5 3
ZNF334 WILD-TYPE 66 42 74 42
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S773.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF334 MUTATED 2 2 4
ZNF334 WILD-TYPE 27 17 60
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.88

Table S774.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF334 MUTATED 3 2 3
ZNF334 WILD-TYPE 30 46 28
'RRAS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 0.46

Table S775.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RRAS2 MUTATED 0 2 0 0 2
RRAS2 WILD-TYPE 56 150 11 5 16
'RRAS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.64

Table S776.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RRAS2 MUTATED 1 0 1 1 0 1
RRAS2 WILD-TYPE 38 36 36 9 40 23
'RRAS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.68

Table S777.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RRAS2 MUTATED 0 2 2 0
RRAS2 WILD-TYPE 65 62 38 17
'RRAS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.57

Table S778.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RRAS2 MUTATED 1 0 3
RRAS2 WILD-TYPE 78 85 80
'RRAS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.62

Table S779.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RRAS2 MUTATED 0 0 1 0 1 0 2
RRAS2 WILD-TYPE 44 41 16 33 34 31 44
'RRAS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.77

Table S780.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RRAS2 MUTATED 2 0 2
RRAS2 WILD-TYPE 67 79 90
'RRAS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S781.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RRAS2 MUTATED 1 0 2 1
RRAS2 WILD-TYPE 72 43 77 44
'PPM1N MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.76

Table S782.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PPM1N MUTATED 2 1 0 0
PPM1N WILD-TYPE 10 17 11 10
'PPM1N MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.69

Table S783.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PPM1N MUTATED 1 0 1 1 0
PPM1N WILD-TYPE 11 10 6 6 15
'PPM1N MUTATION STATUS' versus 'CN_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.86

Table S784.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PPM1N MUTATED 0 7 0 0 0
PPM1N WILD-TYPE 56 145 11 5 18
'PPM1N MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S785.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PPM1N MUTATED 1 1 1
PPM1N WILD-TYPE 42 38 52
'PPM1N MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.9

Table S786.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PPM1N MUTATED 2 0 1 1 2 1
PPM1N WILD-TYPE 37 36 36 9 38 23
'PPM1N MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.91

Table S787.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PPM1N MUTATED 1 3 2 1
PPM1N WILD-TYPE 64 61 38 16
'PPM1N MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0531 (Fisher's exact test), Q value = 0.35

Table S788.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PPM1N MUTATED 2 5 0
PPM1N WILD-TYPE 77 80 83
'PPM1N MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00356 (Fisher's exact test), Q value = 0.071

Table S789.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PPM1N MUTATED 1 0 0 5 1 0 0
PPM1N WILD-TYPE 43 41 17 28 34 31 46

Figure S181.  Get High-res Image Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPM1N MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.51

Table S790.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PPM1N MUTATED 1 5 1
PPM1N WILD-TYPE 68 74 91
'PPM1N MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.52

Table S791.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PPM1N MUTATED 4 1 0 2
PPM1N WILD-TYPE 69 42 79 43
'FCN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.77

Table S792.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
FCN1 MUTATED 0 7 0 0 1
FCN1 WILD-TYPE 56 145 11 5 17
'FCN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.81

Table S793.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FCN1 MUTATED 2 0 3
FCN1 WILD-TYPE 41 39 50
'FCN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.81

Table S794.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FCN1 MUTATED 2 1 1 1 0 1
FCN1 WILD-TYPE 37 35 36 9 40 23
'FCN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.95

Table S795.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FCN1 MUTATED 1 3 1 1
FCN1 WILD-TYPE 64 61 39 16
'FCN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.76

Table S796.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
FCN1 MUTATED 4 3 1
FCN1 WILD-TYPE 75 82 82
'FCN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.6

Table S797.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
FCN1 MUTATED 0 1 1 3 2 0 1
FCN1 WILD-TYPE 44 40 16 30 33 31 45
'FCN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S798.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
FCN1 MUTATED 2 3 3
FCN1 WILD-TYPE 67 76 89
'FCN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S799.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
FCN1 MUTATED 4 1 2 1
FCN1 WILD-TYPE 69 42 77 44
'FCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.51

Table S800.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
FCN1 MUTATED 0 2 1
FCN1 WILD-TYPE 29 17 63
'FCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.49

Table S801.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
FCN1 MUTATED 1 0 2
FCN1 WILD-TYPE 32 48 29
'TIAL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.76

Table S802.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TIAL1 MUTATED 2 1 0 0
TIAL1 WILD-TYPE 10 17 11 10
'TIAL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0772 (Fisher's exact test), Q value = 0.41

Table S803.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TIAL1 MUTATED 1 0 0 2 0
TIAL1 WILD-TYPE 11 10 7 5 15
'TIAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.75

Table S804.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TIAL1 MUTATED 0 9 0 0 1
TIAL1 WILD-TYPE 56 143 11 5 17
'TIAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.48

Table S805.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TIAL1 MUTATED 1 0 5
TIAL1 WILD-TYPE 42 39 48
'TIAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.81

Table S806.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TIAL1 MUTATED 1 1 4 1 1 1
TIAL1 WILD-TYPE 38 35 33 9 39 23
'TIAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0507 (Fisher's exact test), Q value = 0.34

Table S807.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TIAL1 MUTATED 0 4 4 1
TIAL1 WILD-TYPE 65 60 36 16
'TIAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 0.42

Table S808.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TIAL1 MUTATED 2 7 1
TIAL1 WILD-TYPE 77 78 82
'TIAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0063

Table S809.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TIAL1 MUTATED 0 0 1 6 3 0 0
TIAL1 WILD-TYPE 44 41 16 27 32 31 46

Figure S182.  Get High-res Image Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TIAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S810.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TIAL1 MUTATED 2 3 5
TIAL1 WILD-TYPE 67 76 87
'TIAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.069 (Fisher's exact test), Q value = 0.4

Table S811.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TIAL1 MUTATED 7 0 2 1
TIAL1 WILD-TYPE 66 43 77 44
'TIAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.76

Table S812.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
TIAL1 MUTATED 1 2 2
TIAL1 WILD-TYPE 28 17 62
'TIAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.73

Table S813.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
TIAL1 MUTATED 1 1 3
TIAL1 WILD-TYPE 32 47 28
'PSMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.75

Table S814.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PSMC4 MUTATED 0 9 0 0 1
PSMC4 WILD-TYPE 56 143 11 5 17
'PSMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.81

Table S815.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PSMC4 MUTATED 2 0 3
PSMC4 WILD-TYPE 41 39 50
'PSMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.48

Table S816.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PSMC4 MUTATED 3 3 0 1 0 1
PSMC4 WILD-TYPE 36 33 37 9 40 23
'PSMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.97

Table S817.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PSMC4 MUTATED 4 2 1 1
PSMC4 WILD-TYPE 61 62 39 16
'PSMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.69

Table S818.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PSMC4 MUTATED 6 2 3
PSMC4 WILD-TYPE 73 83 80
'PSMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00901 (Fisher's exact test), Q value = 0.13

Table S819.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PSMC4 MUTATED 0 0 1 1 6 1 2
PSMC4 WILD-TYPE 44 41 16 32 29 30 44

Figure S183.  Get High-res Image Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PSMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.99

Table S820.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PSMC4 MUTATED 4 3 3
PSMC4 WILD-TYPE 65 76 89
'PSMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.58

Table S821.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PSMC4 MUTATED 6 0 3 1
PSMC4 WILD-TYPE 67 43 76 44
'PSMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.52

Table S822.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
PSMC4 MUTATED 1 2 1
PSMC4 WILD-TYPE 28 17 63
'PSMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S823.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
PSMC4 MUTATED 2 1 1
PSMC4 WILD-TYPE 31 47 30
'MFAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.76

Table S824.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MFAP5 MUTATED 0 8 0 0 1
MFAP5 WILD-TYPE 56 144 11 5 17
'MFAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.87

Table S825.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MFAP5 MUTATED 3 1 1
MFAP5 WILD-TYPE 40 38 52
'MFAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00409 (Fisher's exact test), Q value = 0.076

Table S826.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MFAP5 MUTATED 5 2 0 2 0 0
MFAP5 WILD-TYPE 34 34 37 8 40 24

Figure S184.  Get High-res Image Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MFAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S827.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MFAP5 MUTATED 4 3 2 0
MFAP5 WILD-TYPE 61 61 38 17
'MFAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.95

Table S828.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MFAP5 MUTATED 4 3 2
MFAP5 WILD-TYPE 75 82 81
'MFAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00325 (Fisher's exact test), Q value = 0.067

Table S829.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MFAP5 MUTATED 0 0 3 2 3 1 0
MFAP5 WILD-TYPE 44 41 14 31 32 30 46

Figure S185.  Get High-res Image Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MFAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.59

Table S830.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MFAP5 MUTATED 4 4 1
MFAP5 WILD-TYPE 65 75 91
'MFAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.73

Table S831.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MFAP5 MUTATED 4 1 1 3
MFAP5 WILD-TYPE 69 42 78 42
'MFAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.31

Table S832.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MFAP5 MUTATED 1 2 0
MFAP5 WILD-TYPE 28 17 64

Figure S186.  Get High-res Image Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MFAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.58

Table S833.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MFAP5 MUTATED 2 0 1
MFAP5 WILD-TYPE 31 48 30
'RAB3GAP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S834.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RAB3GAP1 MUTATED 1 1 1 0
RAB3GAP1 WILD-TYPE 11 17 10 10
'RAB3GAP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 0.41

Table S835.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RAB3GAP1 MUTATED 1 0 2 0 0
RAB3GAP1 WILD-TYPE 11 10 5 7 15
'RAB3GAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.31

Table S836.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RAB3GAP1 MUTATED 0 12 2 0 2
RAB3GAP1 WILD-TYPE 56 140 9 5 16

Figure S187.  Get High-res Image Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAB3GAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.75

Table S837.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RAB3GAP1 MUTATED 1 2 5
RAB3GAP1 WILD-TYPE 42 37 48
'RAB3GAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.58

Table S838.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RAB3GAP1 MUTATED 4 5 3 0 0 2
RAB3GAP1 WILD-TYPE 35 31 34 10 40 22
'RAB3GAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S839.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RAB3GAP1 MUTATED 5 5 2 2
RAB3GAP1 WILD-TYPE 60 59 38 15
'RAB3GAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S840.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RAB3GAP1 MUTATED 6 5 5
RAB3GAP1 WILD-TYPE 73 80 78
'RAB3GAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00136 (Fisher's exact test), Q value = 0.038

Table S841.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RAB3GAP1 MUTATED 0 0 3 5 5 2 1
RAB3GAP1 WILD-TYPE 44 41 14 28 30 29 45

Figure S188.  Get High-res Image Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.97

Table S842.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RAB3GAP1 MUTATED 6 4 5
RAB3GAP1 WILD-TYPE 63 75 87
'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.63

Table S843.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RAB3GAP1 MUTATED 8 1 5 1
RAB3GAP1 WILD-TYPE 65 42 74 44
'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.76

Table S844.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
RAB3GAP1 MUTATED 1 2 2
RAB3GAP1 WILD-TYPE 28 17 62
'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 0.41

Table S845.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
RAB3GAP1 MUTATED 2 0 3
RAB3GAP1 WILD-TYPE 31 48 28
'MSH6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.76

Table S846.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MSH6 MUTATED 2 1 0 0
MSH6 WILD-TYPE 10 17 11 10
'MSH6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.69

Table S847.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MSH6 MUTATED 1 0 1 1 0
MSH6 WILD-TYPE 11 10 6 6 15
'MSH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0703 (Fisher's exact test), Q value = 0.41

Table S848.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MSH6 MUTATED 1 12 0 0 4
MSH6 WILD-TYPE 55 140 11 5 14
'MSH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.95

Table S849.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MSH6 MUTATED 2 1 4
MSH6 WILD-TYPE 41 38 49
'MSH6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.57

Table S850.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MSH6 MUTATED 4 5 1 2 1 2
MSH6 WILD-TYPE 35 31 36 8 39 22
'MSH6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S851.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MSH6 MUTATED 5 6 3 1
MSH6 WILD-TYPE 60 58 37 16
'MSH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.74

Table S852.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MSH6 MUTATED 7 7 3
MSH6 WILD-TYPE 72 78 80
'MSH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0071

Table S853.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MSH6 MUTATED 1 0 2 6 7 0 1
MSH6 WILD-TYPE 43 41 15 27 28 31 45

Figure S189.  Get High-res Image Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.85

Table S854.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MSH6 MUTATED 5 7 4
MSH6 WILD-TYPE 64 72 88
'MSH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.53

Table S855.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MSH6 MUTATED 9 1 3 3
MSH6 WILD-TYPE 64 42 76 42
'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.58

Table S856.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MSH6 MUTATED 0 2 2
MSH6 WILD-TYPE 29 17 62
'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S857.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MSH6 MUTATED 1 1 2
MSH6 WILD-TYPE 32 47 29
'BMP2K MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.52

Table S858.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
BMP2K MUTATED 3 1 0 0
BMP2K WILD-TYPE 9 17 11 10
'BMP2K MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 0.44

Table S859.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
BMP2K MUTATED 1 0 1 2 0
BMP2K WILD-TYPE 11 10 6 5 15
'BMP2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.57

Table S860.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
BMP2K MUTATED 0 12 0 0 1
BMP2K WILD-TYPE 56 140 11 5 17
'BMP2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.69

Table S861.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
BMP2K MUTATED 1 1 5
BMP2K WILD-TYPE 42 38 48
'BMP2K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S862.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
BMP2K MUTATED 4 2 2 0 2 1
BMP2K WILD-TYPE 35 34 35 10 38 23
'BMP2K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S863.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
BMP2K MUTATED 4 4 2 1
BMP2K WILD-TYPE 61 60 38 16
'BMP2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.69

Table S864.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
BMP2K MUTATED 2 7 4
BMP2K WILD-TYPE 77 78 79
'BMP2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.17

Table S865.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
BMP2K MUTATED 0 1 1 6 3 1 1
BMP2K WILD-TYPE 44 40 16 27 32 30 45

Figure S190.  Get High-res Image Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BMP2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.61

Table S866.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
BMP2K MUTATED 1 6 6
BMP2K WILD-TYPE 68 73 86
'BMP2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.75

Table S867.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
BMP2K MUTATED 7 1 4 1
BMP2K WILD-TYPE 66 42 75 44
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S868.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
BMP2K MUTATED 1 1 4
BMP2K WILD-TYPE 28 18 60
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S869.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
BMP2K MUTATED 1 3 2
BMP2K WILD-TYPE 32 45 29
'ZNF606 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.52

Table S870.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF606 MUTATED 3 1 0 0
ZNF606 WILD-TYPE 9 17 11 10
'ZNF606 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0915 (Fisher's exact test), Q value = 0.44

Table S871.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF606 MUTATED 1 0 1 2 0
ZNF606 WILD-TYPE 11 10 6 5 15
'ZNF606 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.41

Table S872.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF606 MUTATED 0 14 0 0 2
ZNF606 WILD-TYPE 56 138 11 5 16
'ZNF606 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.58

Table S873.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF606 MUTATED 1 1 6
ZNF606 WILD-TYPE 42 38 47
'ZNF606 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S874.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF606 MUTATED 3 5 3 0 2 1
ZNF606 WILD-TYPE 36 31 34 10 38 23
'ZNF606 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S875.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF606 MUTATED 6 5 2 1
ZNF606 WILD-TYPE 59 59 38 16
'ZNF606 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S876.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF606 MUTATED 6 6 4
ZNF606 WILD-TYPE 73 79 79
'ZNF606 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00253 (Fisher's exact test), Q value = 0.055

Table S877.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF606 MUTATED 1 0 2 6 5 0 2
ZNF606 WILD-TYPE 43 41 15 27 30 31 44

Figure S191.  Get High-res Image Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF606 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S878.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF606 MUTATED 4 6 5
ZNF606 WILD-TYPE 65 73 87
'ZNF606 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.85

Table S879.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF606 MUTATED 7 1 5 2
ZNF606 WILD-TYPE 66 42 74 43
'ZNF606 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S880.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF606 MUTATED 1 1 3
ZNF606 WILD-TYPE 28 18 61
'ZNF606 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.92

Table S881.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF606 MUTATED 2 1 2
ZNF606 WILD-TYPE 31 47 29
'ZNF263 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.85

Table S882.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF263 MUTATED 0 7 0 0 0
ZNF263 WILD-TYPE 56 145 11 5 18
'ZNF263 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.76

Table S883.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF263 MUTATED 1 0 3
ZNF263 WILD-TYPE 42 39 50
'ZNF263 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S884.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF263 MUTATED 3 1 2 0 1 0
ZNF263 WILD-TYPE 36 35 35 10 39 24
'ZNF263 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S885.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF263 MUTATED 2 3 2 0
ZNF263 WILD-TYPE 63 61 38 17
'ZNF263 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.86

Table S886.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF263 MUTATED 1 4 2
ZNF263 WILD-TYPE 78 81 81
'ZNF263 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.28

Table S887.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF263 MUTATED 0 0 0 3 2 2 0
ZNF263 WILD-TYPE 44 41 17 30 33 29 46

Figure S192.  Get High-res Image Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF263 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.6

Table S888.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF263 MUTATED 0 3 4
ZNF263 WILD-TYPE 69 76 88
'ZNF263 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S889.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF263 MUTATED 3 1 3 0
ZNF263 WILD-TYPE 70 42 76 45
'ZNF263 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S890.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF263 MUTATED 1 1 2
ZNF263 WILD-TYPE 28 18 62
'ZNF263 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0346 (Fisher's exact test), Q value = 0.28

Table S891.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF263 MUTATED 1 0 3
ZNF263 WILD-TYPE 32 48 28

Figure S193.  Get High-res Image Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CHEK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S892.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CHEK2 MUTATED 1 2 0 0
CHEK2 WILD-TYPE 11 16 11 10
'CHEK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.6

Table S893.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CHEK2 MUTATED 2 0 1 0 0
CHEK2 WILD-TYPE 10 10 6 7 15
'CHEK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.81

Table S894.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CHEK2 MUTATED 1 10 0 0 2
CHEK2 WILD-TYPE 55 142 11 5 16
'CHEK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.69

Table S895.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CHEK2 MUTATED 2 0 4
CHEK2 WILD-TYPE 41 39 49
'CHEK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.56

Table S896.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CHEK2 MUTATED 2 5 1 1 1 0
CHEK2 WILD-TYPE 37 31 36 9 39 24
'CHEK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S897.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CHEK2 MUTATED 4 3 3 0
CHEK2 WILD-TYPE 61 61 37 17
'CHEK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.58

Table S898.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CHEK2 MUTATED 7 4 2
CHEK2 WILD-TYPE 72 81 81
'CHEK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00329 (Fisher's exact test), Q value = 0.067

Table S899.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CHEK2 MUTATED 1 1 0 3 7 1 0
CHEK2 WILD-TYPE 43 40 17 30 28 30 46

Figure S194.  Get High-res Image Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHEK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.59

Table S900.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CHEK2 MUTATED 2 7 3
CHEK2 WILD-TYPE 67 72 89
'CHEK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S901.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CHEK2 MUTATED 5 2 4 1
CHEK2 WILD-TYPE 68 41 75 44
'CHEK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S902.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CHEK2 MUTATED 1 1 2
CHEK2 WILD-TYPE 28 18 62
'CHEK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.71

Table S903.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CHEK2 MUTATED 0 2 2
CHEK2 WILD-TYPE 33 46 29
'MGA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.73

Table S904.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MGA MUTATED 3 2 0 1
MGA WILD-TYPE 9 16 11 9
'MGA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.76

Table S905.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MGA MUTATED 2 0 1 2 1
MGA WILD-TYPE 10 10 6 5 14
'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.88

Table S906.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MGA MUTATED 3 20 1 0 2
MGA WILD-TYPE 53 132 10 5 16
'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S907.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MGA MUTATED 5 3 5
MGA WILD-TYPE 38 36 48
'MGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.49

Table S908.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MGA MUTATED 8 6 1 2 3 2
MGA WILD-TYPE 31 30 36 8 37 22
'MGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.74

Table S909.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MGA MUTATED 11 7 2 2
MGA WILD-TYPE 54 57 38 15
'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.25

Table S910.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MGA MUTATED 12 11 3
MGA WILD-TYPE 67 74 80

Figure S195.  Get High-res Image Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00235 (Fisher's exact test), Q value = 0.054

Table S911.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MGA MUTATED 3 1 3 7 9 1 2
MGA WILD-TYPE 41 40 14 26 26 30 44

Figure S196.  Get High-res Image Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.51

Table S912.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MGA MUTATED 10 9 5
MGA WILD-TYPE 59 70 87
'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00912 (Fisher's exact test), Q value = 0.13

Table S913.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MGA MUTATED 14 1 4 5
MGA WILD-TYPE 59 42 75 40

Figure S197.  Get High-res Image Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0961 (Fisher's exact test), Q value = 0.45

Table S914.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MGA MUTATED 5 3 3
MGA WILD-TYPE 24 16 61
'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.31

Table S915.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MGA MUTATED 5 1 5
MGA WILD-TYPE 28 47 26

Figure S198.  Get High-res Image Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RHBDD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S916.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RHBDD3 MUTATED 0 4 0 0 0
RHBDD3 WILD-TYPE 56 148 11 5 18
'RHBDD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.49

Table S917.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RHBDD3 MUTATED 0 0 3
RHBDD3 WILD-TYPE 43 39 50
'RHBDD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S918.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RHBDD3 MUTATED 0 1 1 0 1 1
RHBDD3 WILD-TYPE 39 35 36 10 39 23
'RHBDD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.95

Table S919.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RHBDD3 MUTATED 1 1 1 1
RHBDD3 WILD-TYPE 64 63 39 16
'RHBDD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.63

Table S920.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RHBDD3 MUTATED 1 3 0
RHBDD3 WILD-TYPE 78 82 83
'RHBDD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.23

Table S921.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RHBDD3 MUTATED 0 0 0 3 1 0 0
RHBDD3 WILD-TYPE 44 41 17 30 34 31 46

Figure S199.  Get High-res Image Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RHBDD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.97

Table S922.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RHBDD3 MUTATED 2 1 1
RHBDD3 WILD-TYPE 67 78 91
'RHBDD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.33

Table S923.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RHBDD3 MUTATED 4 0 0 0
RHBDD3 WILD-TYPE 69 43 79 45

Figure S200.  Get High-res Image Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.6

Table S924.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TAP1 MUTATED 0 6 0 0 2
TAP1 WILD-TYPE 56 146 11 5 16
'TAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S925.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TAP1 MUTATED 1 0 2
TAP1 WILD-TYPE 42 39 51
'TAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S926.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TAP1 MUTATED 1 3 1 0 1 1
TAP1 WILD-TYPE 38 33 36 10 39 23
'TAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S927.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TAP1 MUTATED 2 3 1 1
TAP1 WILD-TYPE 63 61 39 16
'TAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.51

Table S928.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TAP1 MUTATED 4 4 0
TAP1 WILD-TYPE 75 81 83
'TAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00296 (Fisher's exact test), Q value = 0.062

Table S929.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TAP1 MUTATED 0 0 1 3 4 0 0
TAP1 WILD-TYPE 44 41 16 30 31 31 46

Figure S201.  Get High-res Image Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.74

Table S930.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TAP1 MUTATED 2 4 1
TAP1 WILD-TYPE 67 75 91
'TAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 0.24

Table S931.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TAP1 MUTATED 6 0 1 0
TAP1 WILD-TYPE 67 43 78 45

Figure S202.  Get High-res Image Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.95

Table S932.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RB1 MUTATED 1 3 2 0
RB1 WILD-TYPE 11 15 9 10
'RB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00565 (Fisher's exact test), Q value = 0.095

Table S933.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RB1 MUTATED 5 0 0 1 0
RB1 WILD-TYPE 7 10 7 6 15

Figure S203.  Get High-res Image Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.79

Table S934.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RB1 MUTATED 2 16 0 0 2
RB1 WILD-TYPE 54 136 11 5 16
'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.68

Table S935.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RB1 MUTATED 2 1 6
RB1 WILD-TYPE 41 38 47
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.56

Table S936.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RB1 MUTATED 3 6 2 3 3 1
RB1 WILD-TYPE 36 30 35 7 37 23
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.85

Table S937.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RB1 MUTATED 7 4 6 1
RB1 WILD-TYPE 58 60 34 16
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.82

Table S938.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RB1 MUTATED 9 6 5
RB1 WILD-TYPE 70 79 78
'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0036

Table S939.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RB1 MUTATED 2 0 0 5 10 2 1
RB1 WILD-TYPE 42 41 17 28 25 29 45

Figure S204.  Get High-res Image Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.57

Table S940.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RB1 MUTATED 3 10 6
RB1 WILD-TYPE 66 69 86
'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.23

Table S941.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RB1 MUTATED 11 0 5 3
RB1 WILD-TYPE 62 43 74 42

Figure S205.  Get High-res Image Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S942.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
RB1 MUTATED 1 1 2
RB1 WILD-TYPE 28 18 62
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.57

Table S943.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
RB1 MUTATED 2 0 2
RB1 WILD-TYPE 31 48 29
'SLC1A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.97

Table S944.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SLC1A3 MUTATED 2 8 0 0 2
SLC1A3 WILD-TYPE 54 144 11 5 16
'SLC1A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.97

Table S945.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SLC1A3 MUTATED 3 1 2
SLC1A3 WILD-TYPE 40 38 51
'SLC1A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.25

Table S946.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SLC1A3 MUTATED 2 4 1 2 0 0
SLC1A3 WILD-TYPE 37 32 36 8 40 24

Figure S206.  Get High-res Image Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SLC1A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.95

Table S947.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SLC1A3 MUTATED 4 2 3 0
SLC1A3 WILD-TYPE 61 62 37 17
'SLC1A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.55

Table S948.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SLC1A3 MUTATED 7 2 3
SLC1A3 WILD-TYPE 72 83 80
'SLC1A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.032 (Fisher's exact test), Q value = 0.27

Table S949.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SLC1A3 MUTATED 1 0 2 2 5 0 2
SLC1A3 WILD-TYPE 43 41 15 31 30 31 44

Figure S207.  Get High-res Image Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.72

Table S950.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SLC1A3 MUTATED 6 3 3
SLC1A3 WILD-TYPE 63 76 89
'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.69

Table S951.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SLC1A3 MUTATED 6 0 4 2
SLC1A3 WILD-TYPE 67 43 75 43
'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.72

Table S952.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
SLC1A3 MUTATED 2 2 2
SLC1A3 WILD-TYPE 27 17 62
'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.79

Table S953.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
SLC1A3 MUTATED 3 1 2
SLC1A3 WILD-TYPE 30 47 29
'ATAD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.69

Table S954.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ATAD5 MUTATED 1 14 0 0 2
ATAD5 WILD-TYPE 55 138 11 5 16
'ATAD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.73

Table S955.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ATAD5 MUTATED 3 1 6
ATAD5 WILD-TYPE 40 38 47
'ATAD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.85

Table S956.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ATAD5 MUTATED 2 4 2 2 2 1
ATAD5 WILD-TYPE 37 32 35 8 38 23
'ATAD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.96

Table S957.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ATAD5 MUTATED 4 5 4 0
ATAD5 WILD-TYPE 61 59 36 17
'ATAD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S958.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ATAD5 MUTATED 7 5 5
ATAD5 WILD-TYPE 72 80 78
'ATAD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.16

Table S959.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ATAD5 MUTATED 0 1 1 4 7 1 3
ATAD5 WILD-TYPE 44 40 16 29 28 30 43

Figure S208.  Get High-res Image Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATAD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S960.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ATAD5 MUTATED 3 6 7
ATAD5 WILD-TYPE 66 73 85
'ATAD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.83

Table S961.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ATAD5 MUTATED 7 1 6 2
ATAD5 WILD-TYPE 66 42 73 43
'ATAD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S962.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ATAD5 MUTATED 1 2 4
ATAD5 WILD-TYPE 28 17 60
'ATAD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.69

Table S963.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ATAD5 MUTATED 1 2 4
ATAD5 WILD-TYPE 32 46 27
'ALG8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S964.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ALG8 MUTATED 1 1 1 0
ALG8 WILD-TYPE 11 17 10 10
'ALG8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.6

Table S965.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ALG8 MUTATED 2 0 1 0 0
ALG8 WILD-TYPE 10 10 6 7 15
'ALG8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S966.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ALG8 MUTATED 1 8 0 0 1
ALG8 WILD-TYPE 55 144 11 5 17
'ALG8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.29

Table S967.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ALG8 MUTATED 0 0 4
ALG8 WILD-TYPE 43 39 49

Figure S209.  Get High-res Image Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ALG8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.94

Table S968.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ALG8 MUTATED 1 3 2 1 1 2
ALG8 WILD-TYPE 38 33 35 9 39 22
'ALG8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.83

Table S969.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ALG8 MUTATED 2 4 2 2
ALG8 WILD-TYPE 63 60 38 15
'ALG8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S970.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ALG8 MUTATED 2 4 4
ALG8 WILD-TYPE 77 81 79
'ALG8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.74

Table S971.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ALG8 MUTATED 0 1 1 3 2 2 1
ALG8 WILD-TYPE 44 40 16 30 33 29 45
'ALG8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S972.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ALG8 MUTATED 2 3 5
ALG8 WILD-TYPE 67 76 87
'ALG8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S973.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ALG8 MUTATED 4 2 3 1
ALG8 WILD-TYPE 69 41 76 44
'TIGD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S974.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TIGD4 MUTATED 1 2 1 0
TIGD4 WILD-TYPE 11 16 10 10
'TIGD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.91

Table S975.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TIGD4 MUTATED 2 0 1 0 1
TIGD4 WILD-TYPE 10 10 6 7 14
'TIGD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.81

Table S976.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TIGD4 MUTATED 1 10 0 0 2
TIGD4 WILD-TYPE 55 142 11 5 16
'TIGD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S977.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TIGD4 MUTATED 2 1 3
TIGD4 WILD-TYPE 41 38 50
'TIGD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.17

Table S978.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TIGD4 MUTATED 4 5 1 2 0 0
TIGD4 WILD-TYPE 35 31 36 8 40 24

Figure S210.  Get High-res Image Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TIGD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.88

Table S979.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TIGD4 MUTATED 5 3 4 0
TIGD4 WILD-TYPE 60 61 36 17
'TIGD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.73

Table S980.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TIGD4 MUTATED 6 5 2
TIGD4 WILD-TYPE 73 80 81
'TIGD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00174 (Fisher's exact test), Q value = 0.045

Table S981.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TIGD4 MUTATED 0 0 1 4 6 0 2
TIGD4 WILD-TYPE 44 41 16 29 29 31 44

Figure S211.  Get High-res Image Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TIGD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.54

Table S982.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TIGD4 MUTATED 3 7 2
TIGD4 WILD-TYPE 66 72 90
'TIGD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.88

Table S983.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TIGD4 MUTATED 6 1 3 2
TIGD4 WILD-TYPE 67 42 76 43
'TIGD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.57

Table S984.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
TIGD4 MUTATED 0 2 3
TIGD4 WILD-TYPE 29 17 61
'TIGD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.92

Table S985.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
TIGD4 MUTATED 2 1 2
TIGD4 WILD-TYPE 31 47 29
'PARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.49

Table S986.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PARG MUTATED 0 7 0 1 1
PARG WILD-TYPE 56 145 11 4 17
'PARG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S987.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PARG MUTATED 2 1 3
PARG WILD-TYPE 41 38 50
'PARG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.68

Table S988.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PARG MUTATED 2 3 2 1 0 0
PARG WILD-TYPE 37 33 35 9 40 24
'PARG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S989.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PARG MUTATED 2 4 2 0
PARG WILD-TYPE 63 60 38 17
'PARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.6

Table S990.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PARG MUTATED 5 3 1
PARG WILD-TYPE 74 82 82
'PARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00875 (Fisher's exact test), Q value = 0.13

Table S991.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PARG MUTATED 0 0 1 3 4 1 0
PARG WILD-TYPE 44 41 16 30 31 30 46

Figure S212.  Get High-res Image Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.56

Table S992.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PARG MUTATED 3 5 1
PARG WILD-TYPE 66 74 91
'PARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 0.42

Table S993.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PARG MUTATED 6 0 1 2
PARG WILD-TYPE 67 43 78 43
'PARG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.31

Table S994.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
PARG MUTATED 2 2 0
PARG WILD-TYPE 27 17 64

Figure S213.  Get High-res Image Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PARG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.57

Table S995.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
PARG MUTATED 2 0 2
PARG WILD-TYPE 31 48 29
'FAT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00657 (Fisher's exact test), Q value = 0.11

Table S996.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
FAT1 MUTATED 6 5 0 0
FAT1 WILD-TYPE 6 13 11 10

Figure S214.  Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FAT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00149 (Fisher's exact test), Q value = 0.04

Table S997.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
FAT1 MUTATED 4 1 1 5 0
FAT1 WILD-TYPE 8 9 6 2 15

Figure S215.  Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.4

Table S998.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
FAT1 MUTATED 3 31 2 1 3
FAT1 WILD-TYPE 53 121 9 4 15
'FAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00597 (Fisher's exact test), Q value = 0.099

Table S999.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FAT1 MUTATED 4 2 15
FAT1 WILD-TYPE 39 37 38

Figure S216.  Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.69

Table S1000.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FAT1 MUTATED 9 9 7 3 3 4
FAT1 WILD-TYPE 30 27 30 7 37 20
'FAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.57

Table S1001.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FAT1 MUTATED 14 7 11 3
FAT1 WILD-TYPE 51 57 29 14
'FAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.57

Table S1002.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
FAT1 MUTATED 11 19 10
FAT1 WILD-TYPE 68 66 73
'FAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0064

Table S1003.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
FAT1 MUTATED 2 2 2 13 11 5 5
FAT1 WILD-TYPE 42 39 15 20 24 26 41

Figure S217.  Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1004.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
FAT1 MUTATED 10 14 14
FAT1 WILD-TYPE 59 65 78
'FAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00699 (Fisher's exact test), Q value = 0.11

Table S1005.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
FAT1 MUTATED 20 3 12 3
FAT1 WILD-TYPE 53 40 67 42

Figure S218.  Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1006.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
FAT1 MUTATED 4 3 10
FAT1 WILD-TYPE 25 16 54
'FAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.81

Table S1007.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
FAT1 MUTATED 6 5 6
FAT1 WILD-TYPE 27 43 25
'DYM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.69

Table S1008.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
DYM MUTATED 0 10 0 0 0
DYM WILD-TYPE 56 142 11 5 18
'DYM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.69

Table S1009.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
DYM MUTATED 2 0 4
DYM WILD-TYPE 41 39 49
'DYM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.82

Table S1010.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
DYM MUTATED 2 3 2 0 0 2
DYM WILD-TYPE 37 33 35 10 40 22
'DYM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.79

Table S1011.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
DYM MUTATED 4 2 1 2
DYM WILD-TYPE 61 62 39 15
'DYM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.99

Table S1012.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
DYM MUTATED 4 4 2
DYM WILD-TYPE 75 81 81
'DYM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00365 (Fisher's exact test), Q value = 0.072

Table S1013.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
DYM MUTATED 0 0 2 4 3 1 0
DYM WILD-TYPE 44 41 15 29 32 30 46

Figure S219.  Get High-res Image Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DYM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1014.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
DYM MUTATED 3 3 3
DYM WILD-TYPE 66 76 89
'DYM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0994 (Fisher's exact test), Q value = 0.46

Table S1015.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
DYM MUTATED 5 0 1 3
DYM WILD-TYPE 68 43 78 42
'DYM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1016.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
DYM MUTATED 1 1 2
DYM WILD-TYPE 28 18 62
'DYM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.57

Table S1017.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
DYM MUTATED 2 0 2
DYM WILD-TYPE 31 48 29
'PSMD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.97

Table S1018.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PSMD3 MUTATED 1 2 0 0
PSMD3 WILD-TYPE 11 16 11 10
'PSMD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.6

Table S1019.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PSMD3 MUTATED 2 0 0 1 0
PSMD3 WILD-TYPE 10 10 7 6 15
'PSMD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.75

Table S1020.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PSMD3 MUTATED 0 9 0 0 1
PSMD3 WILD-TYPE 56 143 11 5 17
'PSMD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.87

Table S1021.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PSMD3 MUTATED 3 1 1
PSMD3 WILD-TYPE 40 38 52
'PSMD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.73

Table S1022.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PSMD3 MUTATED 5 1 1 0 2 0
PSMD3 WILD-TYPE 34 35 36 10 38 24
'PSMD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1023.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PSMD3 MUTATED 4 4 1 0
PSMD3 WILD-TYPE 61 60 39 17
'PSMD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.83

Table S1024.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PSMD3 MUTATED 5 4 2
PSMD3 WILD-TYPE 74 81 81
'PSMD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.19

Table S1025.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PSMD3 MUTATED 0 2 3 3 1 2 0
PSMD3 WILD-TYPE 44 39 14 30 34 29 46

Figure S220.  Get High-res Image Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PSMD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1026.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PSMD3 MUTATED 4 4 3
PSMD3 WILD-TYPE 65 75 89
'PSMD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S1027.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PSMD3 MUTATED 4 2 3 2
PSMD3 WILD-TYPE 69 41 76 43
'PSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.52

Table S1028.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
PSMD3 MUTATED 1 2 1
PSMD3 WILD-TYPE 28 17 63
'PSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S1029.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
PSMD3 MUTATED 2 1 1
PSMD3 WILD-TYPE 31 47 30
'PPM1D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.76

Table S1030.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PPM1D MUTATED 2 1 0 0
PPM1D WILD-TYPE 10 17 11 10
'PPM1D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.69

Table S1031.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PPM1D MUTATED 1 0 1 1 0
PPM1D WILD-TYPE 11 10 6 6 15
'PPM1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.69

Table S1032.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PPM1D MUTATED 0 10 0 0 1
PPM1D WILD-TYPE 56 142 11 5 17
'PPM1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.55

Table S1033.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PPM1D MUTATED 0 1 4
PPM1D WILD-TYPE 43 38 49
'PPM1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.66

Table S1034.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PPM1D MUTATED 2 5 2 1 1 0
PPM1D WILD-TYPE 37 31 35 9 39 24
'PPM1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1035.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PPM1D MUTATED 5 3 3 0
PPM1D WILD-TYPE 60 61 37 17
'PPM1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.76

Table S1036.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PPM1D MUTATED 3 6 2
PPM1D WILD-TYPE 76 79 81
'PPM1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 0.31

Table S1037.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PPM1D MUTATED 0 1 0 3 5 1 1
PPM1D WILD-TYPE 44 40 17 30 30 30 45

Figure S221.  Get High-res Image Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPM1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 0.99

Table S1038.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PPM1D MUTATED 4 3 3
PPM1D WILD-TYPE 65 76 89
'PPM1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0286 (Fisher's exact test), Q value = 0.25

Table S1039.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PPM1D MUTATED 7 2 1 0
PPM1D WILD-TYPE 66 41 78 45

Figure S222.  Get High-res Image Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PPM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.95

Table S1040.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
PPM1D MUTATED 2 0 2
PPM1D WILD-TYPE 27 19 62
'PPM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1041.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
PPM1D MUTATED 2 1 1
PPM1D WILD-TYPE 31 47 30
'ZMYM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.76

Table S1042.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZMYM2 MUTATED 2 1 0 0
ZMYM2 WILD-TYPE 10 17 11 10
'ZMYM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.41

Table S1043.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZMYM2 MUTATED 1 0 0 2 0
ZMYM2 WILD-TYPE 11 10 7 5 15
'ZMYM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.71

Table S1044.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZMYM2 MUTATED 1 13 0 0 2
ZMYM2 WILD-TYPE 55 139 11 5 16
'ZMYM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1045.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZMYM2 MUTATED 3 2 4
ZMYM2 WILD-TYPE 40 37 49
'ZMYM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.82

Table S1046.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZMYM2 MUTATED 3 5 2 1 1 1
ZMYM2 WILD-TYPE 36 31 35 9 39 23
'ZMYM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1047.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZMYM2 MUTATED 6 3 3 1
ZMYM2 WILD-TYPE 59 61 37 16
'ZMYM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.69

Table S1048.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZMYM2 MUTATED 8 6 3
ZMYM2 WILD-TYPE 71 79 80
'ZMYM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.2

Table S1049.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZMYM2 MUTATED 1 1 2 5 6 1 1
ZMYM2 WILD-TYPE 43 40 15 28 29 30 45

Figure S223.  Get High-res Image Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.96

Table S1050.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZMYM2 MUTATED 4 7 5
ZMYM2 WILD-TYPE 65 72 87
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.73

Table S1051.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZMYM2 MUTATED 8 1 4 3
ZMYM2 WILD-TYPE 65 42 75 42
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.51

Table S1052.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZMYM2 MUTATED 2 2 1
ZMYM2 WILD-TYPE 27 17 63
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0956 (Fisher's exact test), Q value = 0.45

Table S1053.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZMYM2 MUTATED 3 0 2
ZMYM2 WILD-TYPE 30 48 29
'INPP4B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.81

Table S1054.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
INPP4B MUTATED 1 3 0 0
INPP4B WILD-TYPE 11 15 11 10
'INPP4B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 0.41

Table S1055.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
INPP4B MUTATED 3 0 1 0 0
INPP4B WILD-TYPE 9 10 6 7 15
'INPP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.69

Table S1056.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
INPP4B MUTATED 0 10 0 0 1
INPP4B WILD-TYPE 56 142 11 5 17
'INPP4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.25

Table S1057.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
INPP4B MUTATED 1 4 2 2 0 0
INPP4B WILD-TYPE 38 32 35 8 40 24

Figure S224.  Get High-res Image Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'INPP4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.6

Table S1058.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
INPP4B MUTATED 4 1 4 0
INPP4B WILD-TYPE 61 63 36 17
'INPP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1059.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
INPP4B MUTATED 4 4 4
INPP4B WILD-TYPE 75 81 79
'INPP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00235 (Fisher's exact test), Q value = 0.054

Table S1060.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
INPP4B MUTATED 0 0 0 3 6 0 3
INPP4B WILD-TYPE 44 41 17 30 29 31 43

Figure S225.  Get High-res Image Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INPP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.95

Table S1061.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
INPP4B MUTATED 2 5 4
INPP4B WILD-TYPE 67 74 88
'INPP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S1062.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
INPP4B MUTATED 3 1 5 2
INPP4B WILD-TYPE 70 42 74 43
'USP28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.75

Table S1063.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
USP28 MUTATED 0 9 0 0 1
USP28 WILD-TYPE 56 143 11 5 17
'USP28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.58

Table S1064.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
USP28 MUTATED 1 0 4
USP28 WILD-TYPE 42 39 49
'USP28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S1065.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
USP28 MUTATED 2 1 2 1 2 1
USP28 WILD-TYPE 37 35 35 9 38 23
'USP28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.97

Table S1066.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
USP28 MUTATED 2 3 3 1
USP28 WILD-TYPE 63 61 37 16
'USP28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.72

Table S1067.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
USP28 MUTATED 2 6 2
USP28 WILD-TYPE 77 79 81
'USP28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00823 (Fisher's exact test), Q value = 0.12

Table S1068.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
USP28 MUTATED 0 0 1 4 3 2 0
USP28 WILD-TYPE 44 41 16 29 32 29 46

Figure S226.  Get High-res Image Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1069.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
USP28 MUTATED 3 3 4
USP28 WILD-TYPE 66 76 88
'USP28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.58

Table S1070.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
USP28 MUTATED 6 0 3 1
USP28 WILD-TYPE 67 43 76 44
'USP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.89

Table S1071.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
USP28 MUTATED 0 1 2
USP28 WILD-TYPE 29 18 62
'USP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.58

Table S1072.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
USP28 MUTATED 2 0 1
USP28 WILD-TYPE 31 48 30
'EMR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.97

Table S1073.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
EMR1 MUTATED 2 1 1 0
EMR1 WILD-TYPE 10 17 10 10
'EMR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0914 (Fisher's exact test), Q value = 0.44

Table S1074.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
EMR1 MUTATED 1 0 2 1 0
EMR1 WILD-TYPE 11 10 5 6 15
'EMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.49

Table S1075.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
EMR1 MUTATED 0 13 0 0 0
EMR1 WILD-TYPE 56 139 11 5 18
'EMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.69

Table S1076.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EMR1 MUTATED 2 0 4
EMR1 WILD-TYPE 41 39 49
'EMR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.71

Table S1077.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EMR1 MUTATED 4 3 3 1 0 1
EMR1 WILD-TYPE 35 33 34 9 40 23
'EMR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S1078.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EMR1 MUTATED 3 5 3 1
EMR1 WILD-TYPE 62 59 37 16
'EMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.92

Table S1079.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
EMR1 MUTATED 4 6 3
EMR1 WILD-TYPE 75 79 80
'EMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00204 (Fisher's exact test), Q value = 0.05

Table S1080.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
EMR1 MUTATED 0 0 1 6 4 1 1
EMR1 WILD-TYPE 44 41 16 27 31 30 45

Figure S227.  Get High-res Image Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.98

Table S1081.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
EMR1 MUTATED 2 5 5
EMR1 WILD-TYPE 67 74 87
'EMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0825 (Fisher's exact test), Q value = 0.42

Table S1082.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
EMR1 MUTATED 8 1 2 1
EMR1 WILD-TYPE 65 42 77 44
'EMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.58

Table S1083.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
EMR1 MUTATED 0 2 2
EMR1 WILD-TYPE 29 17 62
'EMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0353 (Fisher's exact test), Q value = 0.28

Table S1084.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
EMR1 MUTATED 1 0 3
EMR1 WILD-TYPE 32 48 28

Figure S228.  Get High-res Image Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF385B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.79

Table S1085.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF385B MUTATED 0 6 0 0 1
ZNF385B WILD-TYPE 56 146 11 5 17
'ZNF385B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1086.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF385B MUTATED 1 1 3
ZNF385B WILD-TYPE 42 38 50
'ZNF385B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.52

Table S1087.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF385B MUTATED 2 3 0 1 0 1
ZNF385B WILD-TYPE 37 33 37 9 40 23
'ZNF385B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1088.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF385B MUTATED 3 2 1 1
ZNF385B WILD-TYPE 62 62 39 16
'ZNF385B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.72

Table S1089.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF385B MUTATED 4 2 1
ZNF385B WILD-TYPE 75 83 82
'ZNF385B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.24

Table S1090.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF385B MUTATED 0 0 0 2 4 0 1
ZNF385B WILD-TYPE 44 41 17 31 31 31 45

Figure S229.  Get High-res Image Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF385B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.97

Table S1091.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF385B MUTATED 1 3 2
ZNF385B WILD-TYPE 68 76 90
'ZNF385B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.74

Table S1092.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF385B MUTATED 4 0 1 1
ZNF385B WILD-TYPE 69 43 78 44
'RAE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.81

Table S1093.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RAE1 MUTATED 1 3 0 0
RAE1 WILD-TYPE 11 15 11 10
'RAE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0806 (Fisher's exact test), Q value = 0.42

Table S1094.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RAE1 MUTATED 3 0 1 0 0
RAE1 WILD-TYPE 9 10 6 7 15
'RAE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.82

Table S1095.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RAE1 MUTATED 1 8 0 0 2
RAE1 WILD-TYPE 55 144 11 5 16
'RAE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.58

Table S1096.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RAE1 MUTATED 1 0 4
RAE1 WILD-TYPE 42 39 49
'RAE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.69

Table S1097.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RAE1 MUTATED 1 3 3 1 0 1
RAE1 WILD-TYPE 38 33 34 9 40 23
'RAE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.63

Table S1098.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RAE1 MUTATED 3 1 4 1
RAE1 WILD-TYPE 62 63 36 16
'RAE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.83

Table S1099.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RAE1 MUTATED 5 4 2
RAE1 WILD-TYPE 74 81 81
'RAE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 0.2

Table S1100.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RAE1 MUTATED 1 0 1 4 4 1 0
RAE1 WILD-TYPE 43 41 16 29 31 30 46

Figure S230.  Get High-res Image Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.86

Table S1101.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RAE1 MUTATED 4 4 2
RAE1 WILD-TYPE 65 75 90
'RAE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.78

Table S1102.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RAE1 MUTATED 5 0 3 2
RAE1 WILD-TYPE 68 43 76 43
'RAE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.64

Table S1103.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
RAE1 MUTATED 3 0 2
RAE1 WILD-TYPE 26 19 62
'RAE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.92

Table S1104.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
RAE1 MUTATED 2 1 2
RAE1 WILD-TYPE 31 47 29
'TRIM59 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.51

Table S1105.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TRIM59 MUTATED 0 8 0 1 0
TRIM59 WILD-TYPE 56 144 11 4 18
'TRIM59 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1106.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TRIM59 MUTATED 1 2 2
TRIM59 WILD-TYPE 42 37 51
'TRIM59 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.53

Table S1107.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TRIM59 MUTATED 1 1 3 2 1 0
TRIM59 WILD-TYPE 38 35 34 8 39 24
'TRIM59 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.73

Table S1108.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TRIM59 MUTATED 1 4 3 0
TRIM59 WILD-TYPE 64 60 37 17
'TRIM59 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S1109.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TRIM59 MUTATED 3 2 4
TRIM59 WILD-TYPE 76 83 79
'TRIM59 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0761 (Fisher's exact test), Q value = 0.41

Table S1110.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TRIM59 MUTATED 0 0 0 3 3 2 1
TRIM59 WILD-TYPE 44 41 17 30 32 29 45
'TRIM59 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.97

Table S1111.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TRIM59 MUTATED 1 3 4
TRIM59 WILD-TYPE 68 76 88
'TRIM59 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.56

Table S1112.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TRIM59 MUTATED 5 0 3 0
TRIM59 WILD-TYPE 68 43 76 45
'TRIM59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.58

Table S1113.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
TRIM59 MUTATED 0 2 2
TRIM59 WILD-TYPE 29 17 62
'TRIM59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00518 (Fisher's exact test), Q value = 0.09

Table S1114.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
TRIM59 MUTATED 0 0 4
TRIM59 WILD-TYPE 33 48 27

Figure S231.  Get High-res Image Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF721 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1115.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF721 MUTATED 1 1 1 0
ZNF721 WILD-TYPE 11 17 10 10
'ZNF721 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0779 (Fisher's exact test), Q value = 0.41

Table S1116.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF721 MUTATED 1 0 2 0 0
ZNF721 WILD-TYPE 11 10 5 7 15
'ZNF721 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.52

Table S1117.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF721 MUTATED 0 11 0 0 2
ZNF721 WILD-TYPE 56 141 11 5 16
'ZNF721 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.95

Table S1118.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF721 MUTATED 2 1 4
ZNF721 WILD-TYPE 41 38 49
'ZNF721 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.32

Table S1119.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF721 MUTATED 4 4 0 1 0 2
ZNF721 WILD-TYPE 35 32 37 9 40 22

Figure S232.  Get High-res Image Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF721 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S1120.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF721 MUTATED 4 5 1 1
ZNF721 WILD-TYPE 61 59 39 16
'ZNF721 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.87

Table S1121.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF721 MUTATED 6 4 3
ZNF721 WILD-TYPE 73 81 80
'ZNF721 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00558 (Fisher's exact test), Q value = 0.095

Table S1122.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF721 MUTATED 0 0 1 3 6 2 1
ZNF721 WILD-TYPE 44 41 16 30 29 29 45

Figure S233.  Get High-res Image Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF721 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.82

Table S1123.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF721 MUTATED 3 6 3
ZNF721 WILD-TYPE 66 73 89
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.69

Table S1124.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF721 MUTATED 7 1 3 1
ZNF721 WILD-TYPE 66 42 76 44
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.58

Table S1125.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF721 MUTATED 0 2 2
ZNF721 WILD-TYPE 29 17 62
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1126.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF721 MUTATED 1 2 1
ZNF721 WILD-TYPE 32 46 30
'MCTP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.76

Table S1127.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MCTP1 MUTATED 2 1 0 0
MCTP1 WILD-TYPE 10 17 11 10
'MCTP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.63

Table S1128.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MCTP1 MUTATED 0 1 1 1 0
MCTP1 WILD-TYPE 12 9 6 6 15
'MCTP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.9

Table S1129.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MCTP1 MUTATED 1 11 0 0 1
MCTP1 WILD-TYPE 55 141 11 5 17
'MCTP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.97

Table S1130.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MCTP1 MUTATED 3 1 2
MCTP1 WILD-TYPE 40 38 51
'MCTP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.72

Table S1131.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MCTP1 MUTATED 5 2 2 1 1 0
MCTP1 WILD-TYPE 34 34 35 9 39 24
'MCTP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1132.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MCTP1 MUTATED 4 4 3 0
MCTP1 WILD-TYPE 61 60 37 17
'MCTP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.87

Table S1133.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MCTP1 MUTATED 6 4 3
MCTP1 WILD-TYPE 73 81 80
'MCTP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.22

Table S1134.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MCTP1 MUTATED 1 0 1 5 4 0 2
MCTP1 WILD-TYPE 43 41 16 28 31 31 44

Figure S234.  Get High-res Image Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MCTP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.58

Table S1135.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MCTP1 MUTATED 2 7 3
MCTP1 WILD-TYPE 67 72 89
'MCTP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1136.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MCTP1 MUTATED 5 2 4 1
MCTP1 WILD-TYPE 68 41 75 44
'MCTP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.2

Table S1137.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MCTP1 MUTATED 0 3 1
MCTP1 WILD-TYPE 29 16 63

Figure S235.  Get High-res Image Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MCTP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0351 (Fisher's exact test), Q value = 0.28

Table S1138.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MCTP1 MUTATED 1 0 3
MCTP1 WILD-TYPE 32 48 28

Figure S236.  Get High-res Image Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF774 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.97

Table S1139.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF774 MUTATED 1 9 0 0 0
ZNF774 WILD-TYPE 55 143 11 5 18
'ZNF774 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S1140.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF774 MUTATED 3 1 2
ZNF774 WILD-TYPE 40 38 51
'ZNF774 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.8

Table S1141.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF774 MUTATED 4 1 1 1 2 0
ZNF774 WILD-TYPE 35 35 36 9 38 24
'ZNF774 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S1142.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF774 MUTATED 3 4 2 0
ZNF774 WILD-TYPE 62 60 38 17
'ZNF774 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.87

Table S1143.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF774 MUTATED 3 5 2
ZNF774 WILD-TYPE 76 80 81
'ZNF774 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.52

Table S1144.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF774 MUTATED 1 0 1 4 2 0 2
ZNF774 WILD-TYPE 43 41 16 29 33 31 44
'ZNF774 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.77

Table S1145.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF774 MUTATED 3 5 2
ZNF774 WILD-TYPE 66 74 90
'ZNF774 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.72

Table S1146.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF774 MUTATED 6 1 2 1
ZNF774 WILD-TYPE 67 42 77 44
'ZNF774 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.87

Table S1147.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF774 MUTATED 1 2 3
ZNF774 WILD-TYPE 28 17 61
'ZNF774 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.57

Table S1148.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF774 MUTATED 4 1 1
ZNF774 WILD-TYPE 29 47 30
'FAM9A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1149.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
FAM9A MUTATED 3 10 0 0 1
FAM9A WILD-TYPE 53 142 11 5 17
'FAM9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.4

Table S1150.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FAM9A MUTATED 5 0 5
FAM9A WILD-TYPE 38 39 48
'FAM9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.59

Table S1151.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FAM9A MUTATED 3 5 2 0 0 1
FAM9A WILD-TYPE 36 31 35 10 40 23
'FAM9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.88

Table S1152.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FAM9A MUTATED 6 3 1 1
FAM9A WILD-TYPE 59 61 39 16
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.41

Table S1153.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
FAM9A MUTATED 7 6 1
FAM9A WILD-TYPE 72 79 82
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.41

Table S1154.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
FAM9A MUTATED 2 1 3 3 4 0 1
FAM9A WILD-TYPE 42 40 14 30 31 31 45
'FAM9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1155.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
FAM9A MUTATED 5 5 4
FAM9A WILD-TYPE 64 74 88
'FAM9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.27

Table S1156.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
FAM9A MUTATED 8 1 1 4
FAM9A WILD-TYPE 65 42 78 41

Figure S237.  Get High-res Image Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.51

Table S1157.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
FAM9A MUTATED 4 1 2
FAM9A WILD-TYPE 25 18 62
'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.22

Table S1158.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
FAM9A MUTATED 4 0 3
FAM9A WILD-TYPE 29 48 28

Figure S238.  Get High-res Image Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CFP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.77

Table S1159.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CFP MUTATED 0 7 0 0 1
CFP WILD-TYPE 56 145 11 5 17
'CFP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1160.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CFP MUTATED 2 1 2
CFP WILD-TYPE 41 38 51
'CFP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.56

Table S1161.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CFP MUTATED 2 0 0 1 2 0
CFP WILD-TYPE 37 36 37 9 38 24
'CFP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.86

Table S1162.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CFP MUTATED 2 3 0 0
CFP WILD-TYPE 63 61 40 17
'CFP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.76

Table S1163.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CFP MUTATED 4 3 1
CFP WILD-TYPE 75 82 82
'CFP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S1164.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CFP MUTATED 1 2 1 1 1 1 1
CFP WILD-TYPE 43 39 16 32 34 30 45
'CFP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.92

Table S1165.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CFP MUTATED 2 4 2
CFP WILD-TYPE 67 75 90
'CFP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1166.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CFP MUTATED 4 1 2 1
CFP WILD-TYPE 69 42 77 44
'CFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.52

Table S1167.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CFP MUTATED 1 2 1
CFP WILD-TYPE 28 17 63
'CFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1168.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CFP MUTATED 2 1 1
CFP WILD-TYPE 31 47 30
'PER3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.54

Table S1169.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PER3 MUTATED 0 10 0 0 2
PER3 WILD-TYPE 56 142 11 5 16
'PER3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.52

Table S1170.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PER3 MUTATED 2 0 5
PER3 WILD-TYPE 41 39 48
'PER3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.59

Table S1171.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PER3 MUTATED 3 5 2 0 0 1
PER3 WILD-TYPE 36 31 35 10 40 23
'PER3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1172.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PER3 MUTATED 4 5 1 1
PER3 WILD-TYPE 61 59 39 16
'PER3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 0.4

Table S1173.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PER3 MUTATED 7 4 1
PER3 WILD-TYPE 72 81 82
'PER3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.023

Table S1174.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PER3 MUTATED 0 0 1 4 6 0 1
PER3 WILD-TYPE 44 41 16 29 29 31 45

Figure S239.  Get High-res Image Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PER3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.97

Table S1175.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PER3 MUTATED 3 5 3
PER3 WILD-TYPE 66 74 89
'PER3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0841 (Fisher's exact test), Q value = 0.43

Table S1176.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PER3 MUTATED 7 0 2 2
PER3 WILD-TYPE 66 43 77 43
'PER3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.52

Table S1177.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
PER3 MUTATED 1 2 1
PER3 WILD-TYPE 28 17 63
'PER3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.57

Table S1178.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
PER3 MUTATED 2 0 2
PER3 WILD-TYPE 31 48 29
'ZRANB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S1179.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZRANB3 MUTATED 1 2 0 0
ZRANB3 WILD-TYPE 11 16 11 10
'ZRANB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.6

Table S1180.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZRANB3 MUTATED 2 0 0 1 0
ZRANB3 WILD-TYPE 10 10 7 6 15
'ZRANB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.77

Table S1181.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZRANB3 MUTATED 0 7 0 0 1
ZRANB3 WILD-TYPE 56 145 11 5 17
'ZRANB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.81

Table S1182.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZRANB3 MUTATED 1 3 1 1 1 0
ZRANB3 WILD-TYPE 38 33 36 9 39 24
'ZRANB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.89

Table S1183.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZRANB3 MUTATED 4 1 2 0
ZRANB3 WILD-TYPE 61 63 38 17
'ZRANB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 0.41

Table S1184.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZRANB3 MUTATED 3 5 0
ZRANB3 WILD-TYPE 76 80 83
'ZRANB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00261 (Fisher's exact test), Q value = 0.057

Table S1185.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZRANB3 MUTATED 0 0 1 3 4 0 0
ZRANB3 WILD-TYPE 44 41 16 30 31 31 46

Figure S240.  Get High-res Image Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZRANB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.35

Table S1186.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZRANB3 MUTATED 3 4 0
ZRANB3 WILD-TYPE 66 75 92
'ZRANB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.69

Table S1187.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZRANB3 MUTATED 4 0 1 2
ZRANB3 WILD-TYPE 69 43 78 43
'OMA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.59

Table S1188.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
OMA1 MUTATED 0 7 0 0 2
OMA1 WILD-TYPE 56 145 11 5 16
'OMA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.86

Table S1189.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
OMA1 MUTATED 1 1 4
OMA1 WILD-TYPE 42 38 49
'OMA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.65

Table S1190.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
OMA1 MUTATED 4 2 1 1 0 1
OMA1 WILD-TYPE 35 34 36 9 40 23
'OMA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S1191.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
OMA1 MUTATED 3 4 1 1
OMA1 WILD-TYPE 62 60 39 16
'OMA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1192.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
OMA1 MUTATED 3 4 3
OMA1 WILD-TYPE 76 81 80
'OMA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0528 (Fisher's exact test), Q value = 0.35

Table S1193.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
OMA1 MUTATED 0 0 0 4 3 1 2
OMA1 WILD-TYPE 44 41 17 29 32 30 44
'OMA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.8

Table S1194.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
OMA1 MUTATED 1 4 5
OMA1 WILD-TYPE 68 75 87
'OMA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.69

Table S1195.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
OMA1 MUTATED 5 1 4 0
OMA1 WILD-TYPE 68 42 75 45
'OMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.85

Table S1196.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
OMA1 MUTATED 0 1 3
OMA1 WILD-TYPE 29 18 61
'OMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.7

Table S1197.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
OMA1 MUTATED 0 2 2
OMA1 WILD-TYPE 33 46 29
'CLDN15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S1198.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CLDN15 MUTATED 0 5 0 0 0
CLDN15 WILD-TYPE 56 147 11 5 18
'CLDN15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.72

Table S1199.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CLDN15 MUTATED 0 1 3
CLDN15 WILD-TYPE 43 38 50
'CLDN15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.96

Table S1200.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CLDN15 MUTATED 1 1 2 0 0 0
CLDN15 WILD-TYPE 38 35 35 10 40 24
'CLDN15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.97

Table S1201.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CLDN15 MUTATED 1 1 2 0
CLDN15 WILD-TYPE 64 63 38 17
'CLDN15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.52

Table S1202.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CLDN15 MUTATED 0 4 1
CLDN15 WILD-TYPE 79 81 82
'CLDN15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0068

Table S1203.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CLDN15 MUTATED 0 0 0 5 0 0 0
CLDN15 WILD-TYPE 44 41 17 28 35 31 46

Figure S241.  Get High-res Image Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CLDN15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.73

Table S1204.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CLDN15 MUTATED 0 3 2
CLDN15 WILD-TYPE 69 76 90
'CLDN15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.88

Table S1205.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CLDN15 MUTATED 3 1 1 0
CLDN15 WILD-TYPE 70 42 78 45
'CLDN15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1206.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CLDN15 MUTATED 0 0 3
CLDN15 WILD-TYPE 29 19 61
'CLDN15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.49

Table S1207.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CLDN15 MUTATED 1 0 2
CLDN15 WILD-TYPE 32 48 29
'TTC39C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.97

Table S1208.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TTC39C MUTATED 1 2 0 0
TTC39C WILD-TYPE 11 16 11 10
'TTC39C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.6

Table S1209.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TTC39C MUTATED 2 0 0 1 0
TTC39C WILD-TYPE 10 10 7 6 15
'TTC39C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.8

Table S1210.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TTC39C MUTATED 0 6 0 0 1
TTC39C WILD-TYPE 56 146 11 5 17
'TTC39C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0867 (Fisher's exact test), Q value = 0.44

Table S1211.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TTC39C MUTATED 1 4 1 1 0 0
TTC39C WILD-TYPE 38 32 36 9 40 24
'TTC39C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.89

Table S1212.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TTC39C MUTATED 4 1 2 0
TTC39C WILD-TYPE 61 63 38 17
'TTC39C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.78

Table S1213.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TTC39C MUTATED 2 4 1
TTC39C WILD-TYPE 77 81 82
'TTC39C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.25

Table S1214.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TTC39C MUTATED 0 0 0 2 4 0 1
TTC39C WILD-TYPE 44 41 17 31 31 31 45

Figure S242.  Get High-res Image Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TTC39C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.69

Table S1215.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TTC39C MUTATED 1 4 1
TTC39C WILD-TYPE 68 75 91
'TTC39C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.73

Table S1216.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TTC39C MUTATED 4 0 1 1
TTC39C WILD-TYPE 69 43 78 44
'TXNRD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S1217.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TXNRD1 MUTATED 1 2 0 0
TXNRD1 WILD-TYPE 11 16 11 10
'TXNRD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.6

Table S1218.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TXNRD1 MUTATED 2 0 0 1 0
TXNRD1 WILD-TYPE 10 10 7 6 15
'TXNRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S1219.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TXNRD1 MUTATED 1 6 0 0 1
TXNRD1 WILD-TYPE 55 146 11 5 17
'TXNRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.76

Table S1220.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TXNRD1 MUTATED 1 0 3
TXNRD1 WILD-TYPE 42 39 50
'TXNRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.81

Table S1221.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TXNRD1 MUTATED 1 4 2 0 1 0
TXNRD1 WILD-TYPE 38 32 35 10 39 24
'TXNRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1222.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TXNRD1 MUTATED 4 2 2 0
TXNRD1 WILD-TYPE 61 62 38 17
'TXNRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.76

Table S1223.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TXNRD1 MUTATED 4 3 1
TXNRD1 WILD-TYPE 75 82 82
'TXNRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0361 (Fisher's exact test), Q value = 0.29

Table S1224.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TXNRD1 MUTATED 1 0 1 3 3 0 0
TXNRD1 WILD-TYPE 43 41 16 30 32 31 46

Figure S243.  Get High-res Image Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TXNRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.36

Table S1225.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TXNRD1 MUTATED 1 6 1
TXNRD1 WILD-TYPE 68 73 91
'TXNRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.57

Table S1226.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TXNRD1 MUTATED 4 0 1 3
TXNRD1 WILD-TYPE 69 43 78 42
'MECOM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.88

Table S1227.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MECOM MUTATED 2 2 0 0
MECOM WILD-TYPE 10 16 11 10
'MECOM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0483 (Fisher's exact test), Q value = 0.33

Table S1228.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MECOM MUTATED 2 0 0 2 0
MECOM WILD-TYPE 10 10 7 5 15

Figure S244.  Get High-res Image Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MECOM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.54

Table S1229.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MECOM MUTATED 0 10 0 0 2
MECOM WILD-TYPE 56 142 11 5 16
'MECOM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.89

Table S1230.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MECOM MUTATED 1 2 4
MECOM WILD-TYPE 42 37 49
'MECOM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.85

Table S1231.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MECOM MUTATED 2 1 1 0 5 2
MECOM WILD-TYPE 37 35 36 10 35 22
'MECOM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0951 (Fisher's exact test), Q value = 0.45

Table S1232.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MECOM MUTATED 2 5 1 3
MECOM WILD-TYPE 63 59 39 14
'MECOM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.8

Table S1233.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MECOM MUTATED 2 6 4
MECOM WILD-TYPE 77 79 79
'MECOM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.68

Table S1234.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MECOM MUTATED 0 1 1 4 2 2 2
MECOM WILD-TYPE 44 40 16 29 33 29 44
'MECOM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.72

Table S1235.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MECOM MUTATED 1 4 6
MECOM WILD-TYPE 68 75 86
'MECOM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.96

Table S1236.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MECOM MUTATED 5 1 4 1
MECOM WILD-TYPE 68 42 75 44
'MECOM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1237.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MECOM MUTATED 1 1 4
MECOM WILD-TYPE 28 18 60
'MECOM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1238.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MECOM MUTATED 2 3 1
MECOM WILD-TYPE 31 45 30
'CCDC147 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.97

Table S1239.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CCDC147 MUTATED 2 1 1 0
CCDC147 WILD-TYPE 10 17 10 10
'CCDC147 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0927 (Fisher's exact test), Q value = 0.44

Table S1240.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CCDC147 MUTATED 1 0 2 1 0
CCDC147 WILD-TYPE 11 10 5 6 15
'CCDC147 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.49

Table S1241.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CCDC147 MUTATED 0 14 0 0 1
CCDC147 WILD-TYPE 56 138 11 5 17
'CCDC147 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.96

Table S1242.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC147 MUTATED 3 1 4
CCDC147 WILD-TYPE 40 38 49
'CCDC147 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.55

Table S1243.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC147 MUTATED 5 4 2 1 0 1
CCDC147 WILD-TYPE 34 32 35 9 40 23
'CCDC147 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1244.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC147 MUTATED 6 4 2 1
CCDC147 WILD-TYPE 59 60 38 16
'CCDC147 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.88

Table S1245.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CCDC147 MUTATED 6 6 3
CCDC147 WILD-TYPE 73 79 80
'CCDC147 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0084

Table S1246.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CCDC147 MUTATED 0 0 2 6 5 2 0
CCDC147 WILD-TYPE 44 41 15 27 30 29 46

Figure S245.  Get High-res Image Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC147 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.96

Table S1247.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CCDC147 MUTATED 4 6 4
CCDC147 WILD-TYPE 65 73 88
'CCDC147 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.65

Table S1248.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CCDC147 MUTATED 8 1 3 2
CCDC147 WILD-TYPE 65 42 76 43
'CCDC147 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.76

Table S1249.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CCDC147 MUTATED 1 2 2
CCDC147 WILD-TYPE 28 17 62
'CCDC147 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 0.41

Table S1250.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CCDC147 MUTATED 2 0 3
CCDC147 WILD-TYPE 31 48 28
'SACS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.22

Table S1251.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SACS MUTATED 6 3 1 0
SACS WILD-TYPE 6 15 10 10

Figure S246.  Get High-res Image Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SACS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00138 (Fisher's exact test), Q value = 0.038

Table S1252.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SACS MUTATED 2 1 2 5 0
SACS WILD-TYPE 10 9 5 2 15

Figure S247.  Get High-res Image Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SACS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.28

Table S1253.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SACS MUTATED 1 22 0 0 3
SACS WILD-TYPE 55 130 11 5 15

Figure S248.  Get High-res Image Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SACS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.97

Table S1254.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SACS MUTATED 2 2 5
SACS WILD-TYPE 41 37 48
'SACS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.41

Table S1255.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SACS MUTATED 5 5 4 4 2 1
SACS WILD-TYPE 34 31 33 6 38 23
'SACS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.91

Table S1256.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SACS MUTATED 6 7 7 1
SACS WILD-TYPE 59 57 33 16
'SACS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.62

Table S1257.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SACS MUTATED 7 13 6
SACS WILD-TYPE 72 72 77
'SACS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00197 (Fisher's exact test), Q value = 0.05

Table S1258.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SACS MUTATED 1 2 3 9 7 1 3
SACS WILD-TYPE 43 39 14 24 28 30 43

Figure S249.  Get High-res Image Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SACS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.61

Table S1259.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SACS MUTATED 5 12 7
SACS WILD-TYPE 64 67 85
'SACS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0896 (Fisher's exact test), Q value = 0.44

Table S1260.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SACS MUTATED 13 2 6 3
SACS WILD-TYPE 60 41 73 42
'SACS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S1261.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
SACS MUTATED 2 2 4
SACS WILD-TYPE 27 17 60
'SACS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.7

Table S1262.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
SACS MUTATED 1 3 4
SACS WILD-TYPE 32 45 27
'MUTED MUTATION STATUS' versus 'CN_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.79

Table S1263.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MUTED MUTATED 0 6 0 0 1
MUTED WILD-TYPE 56 146 11 5 17
'MUTED MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.95

Table S1264.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MUTED MUTATED 0 1 2
MUTED WILD-TYPE 43 38 51
'MUTED MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.25

Table S1265.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MUTED MUTATED 0 2 1 2 0 1
MUTED WILD-TYPE 39 34 36 8 40 23

Figure S250.  Get High-res Image Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MUTED MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0801 (Fisher's exact test), Q value = 0.42

Table S1266.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MUTED MUTATED 2 0 3 1
MUTED WILD-TYPE 63 64 37 16
'MUTED MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.98

Table S1267.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MUTED MUTATED 1 3 3
MUTED WILD-TYPE 78 82 80
'MUTED MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.49

Table S1268.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MUTED MUTATED 0 0 0 2 3 0 2
MUTED WILD-TYPE 44 41 17 31 32 31 44
'MUTED MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.81

Table S1269.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MUTED MUTATED 1 1 4
MUTED WILD-TYPE 68 78 88
'MUTED MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.79

Table S1270.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MUTED MUTATED 3 0 3 0
MUTED WILD-TYPE 70 43 76 45
'SLC44A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.79

Table S1271.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SLC44A3 MUTATED 0 5 0 0 1
SLC44A3 WILD-TYPE 56 147 11 5 17
'SLC44A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S1272.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SLC44A3 MUTATED 1 2 1
SLC44A3 WILD-TYPE 42 37 52
'SLC44A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.97

Table S1273.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SLC44A3 MUTATED 2 1 1 1 1 0
SLC44A3 WILD-TYPE 37 35 36 9 39 24
'SLC44A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.82

Table S1274.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SLC44A3 MUTATED 1 4 1 0
SLC44A3 WILD-TYPE 64 60 39 17
'SLC44A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1275.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SLC44A3 MUTATED 2 2 2
SLC44A3 WILD-TYPE 77 83 81
'SLC44A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.67

Table S1276.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SLC44A3 MUTATED 0 0 0 2 2 0 2
SLC44A3 WILD-TYPE 44 41 17 31 33 31 44
'SLC44A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S1277.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SLC44A3 MUTATED 1 3 2
SLC44A3 WILD-TYPE 68 76 90
'SLC44A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.69

Table S1278.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SLC44A3 MUTATED 4 0 2 0
SLC44A3 WILD-TYPE 69 43 77 45
'ZNF674 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.79

Table S1279.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF674 MUTATED 1 11 0 0 2
ZNF674 WILD-TYPE 55 141 11 5 16
'ZNF674 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S1280.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF674 MUTATED 2 1 3
ZNF674 WILD-TYPE 41 38 50
'ZNF674 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.4

Table S1281.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF674 MUTATED 3 5 1 2 1 0
ZNF674 WILD-TYPE 36 31 36 8 39 24
'ZNF674 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1282.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF674 MUTATED 4 5 3 0
ZNF674 WILD-TYPE 61 59 37 17
'ZNF674 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.6

Table S1283.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF674 MUTATED 7 5 2
ZNF674 WILD-TYPE 72 80 81
'ZNF674 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00199 (Fisher's exact test), Q value = 0.05

Table S1284.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF674 MUTATED 0 1 2 4 6 0 1
ZNF674 WILD-TYPE 44 40 15 29 29 31 45

Figure S251.  Get High-res Image Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF674 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.54

Table S1285.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF674 MUTATED 4 7 2
ZNF674 WILD-TYPE 65 72 90
'ZNF674 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.76

Table S1286.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF674 MUTATED 7 1 3 2
ZNF674 WILD-TYPE 66 42 76 43
'ZNF674 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.58

Table S1287.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF674 MUTATED 0 2 2
ZNF674 WILD-TYPE 29 17 62
'ZNF674 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.97

Table S1288.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF674 MUTATED 1 1 2
ZNF674 WILD-TYPE 32 47 29
'CCDC144A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1289.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CCDC144A MUTATED 2 2 1 0
CCDC144A WILD-TYPE 10 16 10 10
'CCDC144A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 0.44

Table S1290.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CCDC144A MUTATED 2 0 2 1 0
CCDC144A WILD-TYPE 10 10 5 6 15
'CCDC144A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.89

Table S1291.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CCDC144A MUTATED 2 14 0 0 2
CCDC144A WILD-TYPE 54 138 11 5 16
'CCDC144A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.79

Table S1292.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC144A MUTATED 3 1 5
CCDC144A WILD-TYPE 40 38 48
'CCDC144A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.57

Table S1293.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC144A MUTATED 4 4 4 2 1 0
CCDC144A WILD-TYPE 35 32 33 8 39 24
'CCDC144A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.97

Table S1294.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC144A MUTATED 5 6 4 0
CCDC144A WILD-TYPE 60 58 36 17
'CCDC144A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.91

Table S1295.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CCDC144A MUTATED 7 7 4
CCDC144A WILD-TYPE 72 78 79
'CCDC144A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00402 (Fisher's exact test), Q value = 0.076

Table S1296.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CCDC144A MUTATED 0 1 2 6 6 1 2
CCDC144A WILD-TYPE 44 40 15 27 29 30 44

Figure S252.  Get High-res Image Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC144A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.82

Table S1297.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CCDC144A MUTATED 4 8 5
CCDC144A WILD-TYPE 65 71 87
'CCDC144A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.95

Table S1298.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CCDC144A MUTATED 7 2 4 4
CCDC144A WILD-TYPE 66 41 75 41
'CCDC144A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1299.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CCDC144A MUTATED 1 1 5
CCDC144A WILD-TYPE 28 18 59
'CCDC144A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.69

Table S1300.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CCDC144A MUTATED 1 2 4
CCDC144A WILD-TYPE 32 46 27
'OR8B8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.58

Table S1301.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
OR8B8 MUTATED 0 5 0 0 2
OR8B8 WILD-TYPE 56 147 11 5 16
'OR8B8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1302.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
OR8B8 MUTATED 1 0 2
OR8B8 WILD-TYPE 42 39 51
'OR8B8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.75

Table S1303.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
OR8B8 MUTATED 2 3 1 0 0 0
OR8B8 WILD-TYPE 37 33 36 10 40 24
'OR8B8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S1304.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
OR8B8 MUTATED 2 3 1 0
OR8B8 WILD-TYPE 63 61 39 17
'OR8B8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.72

Table S1305.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
OR8B8 MUTATED 4 2 1
OR8B8 WILD-TYPE 75 83 82
'OR8B8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00538 (Fisher's exact test), Q value = 0.092

Table S1306.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
OR8B8 MUTATED 0 0 2 2 3 0 0
OR8B8 WILD-TYPE 44 41 15 31 32 31 46

Figure S253.  Get High-res Image Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR8B8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.76

Table S1307.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
OR8B8 MUTATED 3 3 1
OR8B8 WILD-TYPE 66 76 91
'OR8B8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.79

Table S1308.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
OR8B8 MUTATED 4 1 2 0
OR8B8 WILD-TYPE 69 42 77 45
'LNX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.76

Table S1309.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
LNX2 MUTATED 2 1 0 0
LNX2 WILD-TYPE 10 17 11 10
'LNX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.69

Table S1310.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
LNX2 MUTATED 1 0 1 1 0
LNX2 WILD-TYPE 11 10 6 6 15
'LNX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.51

Table S1311.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
LNX2 MUTATED 0 12 0 0 2
LNX2 WILD-TYPE 56 140 11 5 16
'LNX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00248 (Fisher's exact test), Q value = 0.055

Table S1312.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
LNX2 MUTATED 0 0 7
LNX2 WILD-TYPE 43 39 46

Figure S254.  Get High-res Image Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LNX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1313.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
LNX2 MUTATED 2 4 2 1 2 1
LNX2 WILD-TYPE 37 32 35 9 38 23
'LNX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1314.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
LNX2 MUTATED 4 4 3 1
LNX2 WILD-TYPE 61 60 37 16
'LNX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.22

Table S1315.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
LNX2 MUTATED 4 9 1
LNX2 WILD-TYPE 75 76 82

Figure S255.  Get High-res Image Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LNX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00294 (Fisher's exact test), Q value = 0.062

Table S1316.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
LNX2 MUTATED 0 1 0 5 6 1 1
LNX2 WILD-TYPE 44 40 17 28 29 30 45

Figure S256.  Get High-res Image Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LNX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.79

Table S1317.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
LNX2 MUTATED 3 7 4
LNX2 WILD-TYPE 66 72 88
'LNX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.58

Table S1318.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
LNX2 MUTATED 8 2 2 2
LNX2 WILD-TYPE 65 41 77 43
'LNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1319.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
LNX2 MUTATED 1 0 2
LNX2 WILD-TYPE 28 19 62
'LNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.82

Table S1320.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
LNX2 MUTATED 2 1 0
LNX2 WILD-TYPE 31 47 31
'TMEM62 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.76

Table S1321.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TMEM62 MUTATED 0 8 0 0 1
TMEM62 WILD-TYPE 56 144 11 5 17
'TMEM62 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1322.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TMEM62 MUTATED 1 0 2
TMEM62 WILD-TYPE 42 39 51
'TMEM62 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.91

Table S1323.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TMEM62 MUTATED 3 1 2 0 0 1
TMEM62 WILD-TYPE 36 35 35 10 40 23
'TMEM62 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1324.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TMEM62 MUTATED 2 3 1 1
TMEM62 WILD-TYPE 63 61 39 16
'TMEM62 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.54

Table S1325.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TMEM62 MUTATED 2 6 1
TMEM62 WILD-TYPE 77 79 82
'TMEM62 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.32

Table S1326.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TMEM62 MUTATED 0 1 0 4 3 0 1
TMEM62 WILD-TYPE 44 40 17 29 32 31 45

Figure S257.  Get High-res Image Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMEM62 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.97

Table S1327.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TMEM62 MUTATED 1 3 4
TMEM62 WILD-TYPE 68 76 88
'TMEM62 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.65

Table S1328.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TMEM62 MUTATED 5 1 2 0
TMEM62 WILD-TYPE 68 42 77 45
'ATF7IP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.59

Table S1329.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ATF7IP MUTATED 2 0 1 0
ATF7IP WILD-TYPE 10 18 10 10
'ATF7IP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.22

Table S1330.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ATF7IP MUTATED 0 0 2 1 0
ATF7IP WILD-TYPE 12 10 5 6 15

Figure S258.  Get High-res Image Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATF7IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.42

Table S1331.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ATF7IP MUTATED 0 13 1 0 2
ATF7IP WILD-TYPE 56 139 10 5 16
'ATF7IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.44

Table S1332.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ATF7IP MUTATED 2 1 8
ATF7IP WILD-TYPE 41 38 45
'ATF7IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.99

Table S1333.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ATF7IP MUTATED 2 5 2 0 3 1
ATF7IP WILD-TYPE 37 31 35 10 37 23
'ATF7IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S1334.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ATF7IP MUTATED 5 5 2 1
ATF7IP WILD-TYPE 60 59 38 16
'ATF7IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.9

Table S1335.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ATF7IP MUTATED 7 4 6
ATF7IP WILD-TYPE 72 81 77
'ATF7IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.27

Table S1336.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ATF7IP MUTATED 1 0 1 4 6 3 2
ATF7IP WILD-TYPE 43 41 16 29 29 28 44

Figure S259.  Get High-res Image Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATF7IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1337.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ATF7IP MUTATED 4 7 6
ATF7IP WILD-TYPE 65 72 86
'ATF7IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.74

Table S1338.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ATF7IP MUTATED 8 1 6 2
ATF7IP WILD-TYPE 65 42 73 43
'ATF7IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.62

Table S1339.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ATF7IP MUTATED 3 2 2
ATF7IP WILD-TYPE 26 17 62
'ATF7IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.16

Table S1340.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ATF7IP MUTATED 5 0 2
ATF7IP WILD-TYPE 28 48 29

Figure S260.  Get High-res Image Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IL20 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.52

Table S1341.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
IL20 MUTATED 3 1 0 0
IL20 WILD-TYPE 9 17 11 10
'IL20 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0942 (Fisher's exact test), Q value = 0.45

Table S1342.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
IL20 MUTATED 1 0 1 2 0
IL20 WILD-TYPE 11 10 6 5 15
'IL20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.79

Table S1343.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
IL20 MUTATED 0 6 0 0 1
IL20 WILD-TYPE 56 146 11 5 17
'IL20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.66

Table S1344.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
IL20 MUTATED 3 1 0 1 1 0
IL20 WILD-TYPE 36 35 37 9 39 24
'IL20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S1345.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
IL20 MUTATED 2 3 1 0
IL20 WILD-TYPE 63 61 39 17
'IL20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.95

Table S1346.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
IL20 MUTATED 3 3 1
IL20 WILD-TYPE 76 82 82
'IL20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.2

Table S1347.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
IL20 MUTATED 0 1 0 4 2 0 0
IL20 WILD-TYPE 44 40 17 29 33 31 46

Figure S261.  Get High-res Image Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.7

Table S1348.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
IL20 MUTATED 1 4 1
IL20 WILD-TYPE 68 75 91
'IL20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.76

Table S1349.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
IL20 MUTATED 3 2 1 0
IL20 WILD-TYPE 70 41 78 45
'C3AR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.76

Table S1350.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C3AR1 MUTATED 2 1 0 0
C3AR1 WILD-TYPE 10 17 11 10
'C3AR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.69

Table S1351.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C3AR1 MUTATED 1 0 1 1 0
C3AR1 WILD-TYPE 11 10 6 6 15
'C3AR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.79

Table S1352.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
C3AR1 MUTATED 0 8 0 0 0
C3AR1 WILD-TYPE 56 144 11 5 18
'C3AR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.57

Table S1353.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C3AR1 MUTATED 1 1 2 2 1 0
C3AR1 WILD-TYPE 38 35 35 8 39 24
'C3AR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.57

Table S1354.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C3AR1 MUTATED 1 2 4 0
C3AR1 WILD-TYPE 64 62 36 17
'C3AR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.85

Table S1355.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
C3AR1 MUTATED 1 3 4
C3AR1 WILD-TYPE 78 82 79
'C3AR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.085 (Fisher's exact test), Q value = 0.43

Table S1356.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
C3AR1 MUTATED 0 0 0 3 2 0 3
C3AR1 WILD-TYPE 44 41 17 30 33 31 43
'C3AR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.95

Table S1357.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
C3AR1 MUTATED 1 2 4
C3AR1 WILD-TYPE 68 77 88
'C3AR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S1358.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
C3AR1 MUTATED 3 1 3 0
C3AR1 WILD-TYPE 70 42 76 45
'PKD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1359.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PKD2 MUTATED 1 1 1 0
PKD2 WILD-TYPE 11 17 10 10
'PKD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S1360.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PKD2 MUTATED 1 0 1 0 1
PKD2 WILD-TYPE 11 10 6 7 14
'PKD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.47

Table S1361.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PKD2 MUTATED 0 5 1 0 2
PKD2 WILD-TYPE 56 147 10 5 16
'PKD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.58

Table S1362.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PKD2 MUTATED 1 3 1 1 0 0
PKD2 WILD-TYPE 38 33 36 9 40 24
'PKD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1363.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PKD2 MUTATED 2 2 2 0
PKD2 WILD-TYPE 63 62 38 17
'PKD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1364.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PKD2 MUTATED 2 3 3
PKD2 WILD-TYPE 77 82 80
'PKD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.71

Table S1365.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PKD2 MUTATED 0 1 0 2 3 0 2
PKD2 WILD-TYPE 44 40 17 31 32 31 44
'PKD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1366.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PKD2 MUTATED 1 3 3
PKD2 WILD-TYPE 68 76 89
'PKD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.72

Table S1367.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PKD2 MUTATED 1 2 4 0
PKD2 WILD-TYPE 72 41 75 45
'BMP5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1368.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
BMP5 MUTATED 2 2 1 0
BMP5 WILD-TYPE 10 16 10 10
'BMP5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.091 (Fisher's exact test), Q value = 0.44

Table S1369.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
BMP5 MUTATED 2 0 2 1 0
BMP5 WILD-TYPE 10 10 5 6 15
'BMP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.72

Table S1370.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
BMP5 MUTATED 1 9 1 0 2
BMP5 WILD-TYPE 55 143 10 5 16
'BMP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1371.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
BMP5 MUTATED 2 1 2
BMP5 WILD-TYPE 41 38 51
'BMP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.62

Table S1372.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
BMP5 MUTATED 1 2 2 2 1 0
BMP5 WILD-TYPE 38 34 35 8 39 24
'BMP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.71

Table S1373.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
BMP5 MUTATED 2 2 4 0
BMP5 WILD-TYPE 63 62 36 17
'BMP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S1374.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
BMP5 MUTATED 5 4 4
BMP5 WILD-TYPE 74 81 79
'BMP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.17

Table S1375.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
BMP5 MUTATED 0 0 1 4 5 1 2
BMP5 WILD-TYPE 44 41 16 29 30 30 44

Figure S262.  Get High-res Image Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BMP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.9

Table S1376.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
BMP5 MUTATED 4 5 3
BMP5 WILD-TYPE 65 74 89
'BMP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S1377.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
BMP5 MUTATED 4 1 4 3
BMP5 WILD-TYPE 69 42 75 42
'BMP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.95

Table S1378.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
BMP5 MUTATED 2 0 2
BMP5 WILD-TYPE 27 19 62
'BMP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S1379.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
BMP5 MUTATED 2 1 1
BMP5 WILD-TYPE 31 47 30
'OR52I2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S1380.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
OR52I2 MUTATED 1 2 0 0
OR52I2 WILD-TYPE 11 16 11 10
'OR52I2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.88

Table S1381.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
OR52I2 MUTATED 1 1 0 1 0
OR52I2 WILD-TYPE 11 9 7 6 15
'OR52I2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.98

Table S1382.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
OR52I2 MUTATED 1 6 0 0 1
OR52I2 WILD-TYPE 55 146 11 5 17
'OR52I2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.29

Table S1383.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
OR52I2 MUTATED 0 0 4
OR52I2 WILD-TYPE 43 39 49

Figure S263.  Get High-res Image Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR52I2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S1384.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
OR52I2 MUTATED 1 3 1 0 1 0
OR52I2 WILD-TYPE 38 33 36 10 39 24
'OR52I2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.86

Table S1385.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
OR52I2 MUTATED 4 1 1 0
OR52I2 WILD-TYPE 61 63 39 17
'OR52I2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.56

Table S1386.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
OR52I2 MUTATED 5 1 2
OR52I2 WILD-TYPE 74 84 81
'OR52I2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0984 (Fisher's exact test), Q value = 0.46

Table S1387.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
OR52I2 MUTATED 1 0 0 2 4 0 1
OR52I2 WILD-TYPE 43 41 17 31 31 31 45
'OR52I2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.99

Table S1388.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
OR52I2 MUTATED 3 2 2
OR52I2 WILD-TYPE 66 77 90
'OR52I2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.97

Table S1389.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
OR52I2 MUTATED 2 0 3 2
OR52I2 WILD-TYPE 71 43 76 43
'OR52I2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1390.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
OR52I2 MUTATED 1 0 2
OR52I2 WILD-TYPE 28 19 62
'OR52I2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1391.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
OR52I2 MUTATED 1 1 1
OR52I2 WILD-TYPE 32 47 30
'C1ORF100 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.76

Table S1392.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C1ORF100 MUTATED 2 1 0 0
C1ORF100 WILD-TYPE 10 17 11 10
'C1ORF100 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.69

Table S1393.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C1ORF100 MUTATED 1 0 1 1 0
C1ORF100 WILD-TYPE 11 10 6 6 15
'C1ORF100 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.38

Table S1394.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
C1ORF100 MUTATED 0 6 0 0 3
C1ORF100 WILD-TYPE 56 146 11 5 15
'C1ORF100 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1395.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C1ORF100 MUTATED 1 1 1
C1ORF100 WILD-TYPE 42 38 52
'C1ORF100 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S1396.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C1ORF100 MUTATED 2 3 1 0 1 0
C1ORF100 WILD-TYPE 37 33 36 10 39 24
'C1ORF100 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.69

Table S1397.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C1ORF100 MUTATED 1 5 1 0
C1ORF100 WILD-TYPE 64 59 39 17
'C1ORF100 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.66

Table S1398.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
C1ORF100 MUTATED 3 5 1
C1ORF100 WILD-TYPE 76 80 82
'C1ORF100 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.17

Table S1399.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
C1ORF100 MUTATED 0 0 1 4 3 0 1
C1ORF100 WILD-TYPE 44 41 16 29 32 31 45

Figure S264.  Get High-res Image Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C1ORF100 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.44

Table S1400.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
C1ORF100 MUTATED 2 6 1
C1ORF100 WILD-TYPE 67 73 91
'C1ORF100 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.9

Table S1401.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
C1ORF100 MUTATED 5 1 2 1
C1ORF100 WILD-TYPE 68 42 77 44
'CCDC160 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.97

Table S1402.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CCDC160 MUTATED 1 2 0 0
CCDC160 WILD-TYPE 11 16 11 10
'CCDC160 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.6

Table S1403.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CCDC160 MUTATED 2 0 0 1 0
CCDC160 WILD-TYPE 10 10 7 6 15
'CCDC160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.69

Table S1404.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CCDC160 MUTATED 0 10 0 0 1
CCDC160 WILD-TYPE 56 142 11 5 17
'CCDC160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1405.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC160 MUTATED 1 1 2
CCDC160 WILD-TYPE 42 38 51
'CCDC160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1406.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC160 MUTATED 2 3 1 1 2 1
CCDC160 WILD-TYPE 37 33 36 9 38 23
'CCDC160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 0.99

Table S1407.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC160 MUTATED 4 2 3 1
CCDC160 WILD-TYPE 61 62 37 16
'CCDC160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.89

Table S1408.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CCDC160 MUTATED 4 5 2
CCDC160 WILD-TYPE 75 80 81
'CCDC160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.25

Table S1409.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CCDC160 MUTATED 0 1 1 4 4 0 1
CCDC160 WILD-TYPE 44 40 16 29 31 31 45

Figure S265.  Get High-res Image Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S1410.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CCDC160 MUTATED 3 4 3
CCDC160 WILD-TYPE 66 75 89
'CCDC160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.57

Table S1411.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CCDC160 MUTATED 6 1 3 0
CCDC160 WILD-TYPE 67 42 76 45
'CCDC160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.89

Table S1412.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CCDC160 MUTATED 0 1 2
CCDC160 WILD-TYPE 29 18 62
'CCDC160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.76

Table S1413.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CCDC160 MUTATED 0 1 2
CCDC160 WILD-TYPE 33 47 29
'NAA15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.88

Table S1414.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
NAA15 MUTATED 2 2 0 0
NAA15 WILD-TYPE 10 16 11 10
'NAA15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.66

Table S1415.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
NAA15 MUTATED 2 0 1 1 0
NAA15 WILD-TYPE 10 10 6 6 15
'NAA15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.96

Table S1416.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
NAA15 MUTATED 2 10 0 0 2
NAA15 WILD-TYPE 54 142 11 5 16
'NAA15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 0.46

Table S1417.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NAA15 MUTATED 5 1 1
NAA15 WILD-TYPE 38 38 52
'NAA15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.55

Table S1418.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NAA15 MUTATED 5 3 1 2 2 0
NAA15 WILD-TYPE 34 33 36 8 38 24
'NAA15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.77

Table S1419.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NAA15 MUTATED 3 7 3 0
NAA15 WILD-TYPE 62 57 37 17
'NAA15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.49

Table S1420.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
NAA15 MUTATED 8 4 2
NAA15 WILD-TYPE 71 81 81
'NAA15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00102 (Fisher's exact test), Q value = 0.031

Table S1421.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
NAA15 MUTATED 0 0 3 4 5 0 2
NAA15 WILD-TYPE 44 41 14 29 30 31 44

Figure S266.  Get High-res Image Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NAA15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.58

Table S1422.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
NAA15 MUTATED 5 6 2
NAA15 WILD-TYPE 64 73 90
'NAA15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.76

Table S1423.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
NAA15 MUTATED 7 1 3 2
NAA15 WILD-TYPE 66 42 76 43
'NAA15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.59

Table S1424.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
NAA15 MUTATED 0 2 4
NAA15 WILD-TYPE 29 17 60
'NAA15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.76

Table S1425.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
NAA15 MUTATED 2 1 3
NAA15 WILD-TYPE 31 47 28
'RNF31 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.76

Table S1426.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RNF31 MUTATED 3 2 1 0
RNF31 WILD-TYPE 9 16 10 10
'RNF31 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0485 (Fisher's exact test), Q value = 0.33

Table S1427.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RNF31 MUTATED 2 0 2 2 0
RNF31 WILD-TYPE 10 10 5 5 15

Figure S267.  Get High-res Image Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RNF31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.72

Table S1428.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RNF31 MUTATED 2 11 1 0 3
RNF31 WILD-TYPE 54 141 10 5 15
'RNF31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.84

Table S1429.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RNF31 MUTATED 4 1 3
RNF31 WILD-TYPE 39 38 50
'RNF31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.41

Table S1430.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RNF31 MUTATED 4 5 0 1 2 0
RNF31 WILD-TYPE 35 31 37 9 38 24
'RNF31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.71

Table S1431.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RNF31 MUTATED 4 7 1 0
RNF31 WILD-TYPE 61 57 39 17
'RNF31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.41

Table S1432.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RNF31 MUTATED 9 6 2
RNF31 WILD-TYPE 70 79 81
'RNF31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00631 (Fisher's exact test), Q value = 0.1

Table S1433.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RNF31 MUTATED 0 2 3 4 6 1 1
RNF31 WILD-TYPE 44 39 14 29 29 30 45

Figure S268.  Get High-res Image Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.16

Table S1434.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RNF31 MUTATED 7 8 1
RNF31 WILD-TYPE 62 71 91

Figure S269.  Get High-res Image Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RNF31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 0.32

Table S1435.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RNF31 MUTATED 10 2 2 2
RNF31 WILD-TYPE 63 41 77 43

Figure S270.  Get High-res Image Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RNF31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.25

Table S1436.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
RNF31 MUTATED 3 3 1
RNF31 WILD-TYPE 26 16 63

Figure S271.  Get High-res Image Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RNF31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.63

Table S1437.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
RNF31 MUTATED 4 1 2
RNF31 WILD-TYPE 29 47 29
'NFE2L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1438.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
NFE2L3 MUTATED 3 8 0 0 1
NFE2L3 WILD-TYPE 53 144 11 5 17
'NFE2L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.27

Table S1439.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NFE2L3 MUTATED 6 0 3
NFE2L3 WILD-TYPE 37 39 50

Figure S272.  Get High-res Image Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NFE2L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.76

Table S1440.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NFE2L3 MUTATED 5 1 1 0 1 1
NFE2L3 WILD-TYPE 34 35 36 10 39 23
'NFE2L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1441.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NFE2L3 MUTATED 3 4 1 1
NFE2L3 WILD-TYPE 62 60 39 16
'NFE2L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 0.33

Table S1442.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
NFE2L3 MUTATED 8 2 2
NFE2L3 WILD-TYPE 71 83 81

Figure S273.  Get High-res Image Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NFE2L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.2

Table S1443.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
NFE2L3 MUTATED 2 0 3 4 2 0 1
NFE2L3 WILD-TYPE 42 41 14 29 33 31 45

Figure S274.  Get High-res Image Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.82

Table S1444.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
NFE2L3 MUTATED 5 3 3
NFE2L3 WILD-TYPE 64 76 89
'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.72

Table S1445.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
NFE2L3 MUTATED 5 0 3 3
NFE2L3 WILD-TYPE 68 43 76 42
'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.61

Table S1446.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
NFE2L3 MUTATED 3 2 2
NFE2L3 WILD-TYPE 26 17 62
'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.63

Table S1447.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
NFE2L3 MUTATED 4 1 2
NFE2L3 WILD-TYPE 29 47 29
'ZKSCAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.85

Table S1448.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZKSCAN1 MUTATED 0 7 0 0 0
ZKSCAN1 WILD-TYPE 56 145 11 5 18
'ZKSCAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.81

Table S1449.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZKSCAN1 MUTATED 2 0 3
ZKSCAN1 WILD-TYPE 41 39 50
'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.55

Table S1450.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZKSCAN1 MUTATED 3 0 2 1 0 1
ZKSCAN1 WILD-TYPE 36 36 35 9 40 23
'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.72

Table S1451.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZKSCAN1 MUTATED 2 1 3 1
ZKSCAN1 WILD-TYPE 63 63 37 16
'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.79

Table S1452.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZKSCAN1 MUTATED 2 4 1
ZKSCAN1 WILD-TYPE 77 81 82
'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.23

Table S1453.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZKSCAN1 MUTATED 0 0 2 3 1 0 1
ZKSCAN1 WILD-TYPE 44 41 15 30 34 31 45

Figure S275.  Get High-res Image Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S1454.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZKSCAN1 MUTATED 3 2 2
ZKSCAN1 WILD-TYPE 66 77 90
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.69

Table S1455.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZKSCAN1 MUTATED 4 0 1 2
ZKSCAN1 WILD-TYPE 69 43 78 43
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1456.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZKSCAN1 MUTATED 1 1 2
ZKSCAN1 WILD-TYPE 28 18 62
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S1457.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZKSCAN1 MUTATED 2 1 1
ZKSCAN1 WILD-TYPE 31 47 30
'CDKL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.8

Table S1458.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CDKL1 MUTATED 0 6 0 0 1
CDKL1 WILD-TYPE 56 146 11 5 17
'CDKL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.97

Table S1459.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CDKL1 MUTATED 1 2 1
CDKL1 WILD-TYPE 42 37 52
'CDKL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.77

Table S1460.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CDKL1 MUTATED 3 1 2 0 0 0
CDKL1 WILD-TYPE 36 35 35 10 40 24
'CDKL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1461.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CDKL1 MUTATED 2 2 2 0
CDKL1 WILD-TYPE 63 62 38 17
'CDKL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1462.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CDKL1 MUTATED 3 2 2
CDKL1 WILD-TYPE 76 83 81
'CDKL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.63

Table S1463.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CDKL1 MUTATED 0 1 0 3 2 0 1
CDKL1 WILD-TYPE 44 40 17 30 33 31 45
'CDKL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S1464.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CDKL1 MUTATED 1 3 2
CDKL1 WILD-TYPE 68 76 90
'CDKL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.84

Table S1465.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CDKL1 MUTATED 1 2 3 0
CDKL1 WILD-TYPE 72 41 76 45
'CDKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.85

Table S1466.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CDKL1 MUTATED 0 1 3
CDKL1 WILD-TYPE 29 18 61
'CDKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.71

Table S1467.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CDKL1 MUTATED 0 2 2
CDKL1 WILD-TYPE 33 46 29
'ERBB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.58

Table S1468.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ERBB3 MUTATED 1 13 0 0 3
ERBB3 WILD-TYPE 55 139 11 5 15
'ERBB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.85

Table S1469.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ERBB3 MUTATED 2 3 6
ERBB3 WILD-TYPE 41 36 47
'ERBB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.81

Table S1470.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ERBB3 MUTATED 2 1 3 2 4 1
ERBB3 WILD-TYPE 37 35 34 8 36 23
'ERBB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S1471.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ERBB3 MUTATED 4 4 4 1
ERBB3 WILD-TYPE 61 60 36 16
'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.6

Table S1472.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ERBB3 MUTATED 5 9 3
ERBB3 WILD-TYPE 74 76 80
'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.69

Table S1473.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ERBB3 MUTATED 2 2 1 5 4 0 3
ERBB3 WILD-TYPE 42 39 16 28 31 31 43
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S1474.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ERBB3 MUTATED 5 5 7
ERBB3 WILD-TYPE 64 74 85
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1475.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ERBB3 MUTATED 7 2 5 3
ERBB3 WILD-TYPE 66 41 74 42
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.97

Table S1476.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ERBB3 MUTATED 2 0 5
ERBB3 WILD-TYPE 27 19 59
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.89

Table S1477.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ERBB3 MUTATED 2 2 3
ERBB3 WILD-TYPE 31 46 28
'SELP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.76

Table S1478.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SELP MUTATED 2 1 0 0
SELP WILD-TYPE 10 17 11 10
'SELP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.69

Table S1479.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SELP MUTATED 1 0 1 1 0
SELP WILD-TYPE 11 10 6 6 15
'SELP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.66

Table S1480.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SELP MUTATED 0 7 1 0 1
SELP WILD-TYPE 56 145 10 5 17
'SELP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.69

Table S1481.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SELP MUTATED 3 2 0 1 1 0
SELP WILD-TYPE 36 34 37 9 39 24
'SELP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1482.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SELP MUTATED 3 3 1 0
SELP WILD-TYPE 62 61 39 17
'SELP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.76

Table S1483.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SELP MUTATED 4 4 1
SELP WILD-TYPE 75 81 82
'SELP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.14

Table S1484.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SELP MUTATED 0 0 2 2 4 0 1
SELP WILD-TYPE 44 41 15 31 31 31 45

Figure S276.  Get High-res Image Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SELP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.63

Table S1485.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SELP MUTATED 4 3 1
SELP WILD-TYPE 65 76 91
'SELP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.65

Table S1486.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SELP MUTATED 5 1 2 0
SELP WILD-TYPE 68 42 77 45
'PPIG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.59

Table S1487.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PPIG MUTATED 3 2 0 0
PPIG WILD-TYPE 9 16 11 10
'PPIG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 0.44

Table S1488.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PPIG MUTATED 2 0 1 2 0
PPIG WILD-TYPE 10 10 6 5 15
'PPIG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.31

Table S1489.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PPIG MUTATED 0 16 0 0 0
PPIG WILD-TYPE 56 136 11 5 18

Figure S277.  Get High-res Image Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPIG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1490.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PPIG MUTATED 3 2 4
PPIG WILD-TYPE 40 37 49
'PPIG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1491.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PPIG MUTATED 4 3 5 0 2 1
PPIG WILD-TYPE 35 33 32 10 38 23
'PPIG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S1492.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PPIG MUTATED 5 5 4 1
PPIG WILD-TYPE 60 59 36 16
'PPIG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.54

Table S1493.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PPIG MUTATED 6 8 2
PPIG WILD-TYPE 73 77 81
'PPIG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00213 (Fisher's exact test), Q value = 0.051

Table S1494.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PPIG MUTATED 1 1 1 7 5 0 1
PPIG WILD-TYPE 43 40 16 26 30 31 45

Figure S278.  Get High-res Image Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPIG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0923 (Fisher's exact test), Q value = 0.44

Table S1495.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PPIG MUTATED 2 9 4
PPIG WILD-TYPE 67 70 88
'PPIG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.66

Table S1496.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PPIG MUTATED 8 1 3 3
PPIG WILD-TYPE 65 42 76 42
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.64

Table S1497.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
PPIG MUTATED 2 3 3
PPIG WILD-TYPE 27 16 61
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0554 (Fisher's exact test), Q value = 0.36

Table S1498.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
PPIG MUTATED 2 1 5
PPIG WILD-TYPE 31 47 26
'GPRASP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.69

Table S1499.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
GPRASP1 MUTATED 3 1 1 0
GPRASP1 WILD-TYPE 9 17 10 10
'GPRASP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0446 (Fisher's exact test), Q value = 0.32

Table S1500.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
GPRASP1 MUTATED 1 0 2 2 0
GPRASP1 WILD-TYPE 11 10 5 5 15

Figure S279.  Get High-res Image Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPRASP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.49

Table S1501.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
GPRASP1 MUTATED 1 19 0 0 1
GPRASP1 WILD-TYPE 55 133 11 5 17
'GPRASP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.95

Table S1502.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
GPRASP1 MUTATED 3 2 6
GPRASP1 WILD-TYPE 40 37 47
'GPRASP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.74

Table S1503.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
GPRASP1 MUTATED 7 4 2 1 2 1
GPRASP1 WILD-TYPE 32 32 35 9 38 23
'GPRASP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1504.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
GPRASP1 MUTATED 6 6 4 1
GPRASP1 WILD-TYPE 59 58 36 16
'GPRASP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1505.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
GPRASP1 MUTATED 6 7 7
GPRASP1 WILD-TYPE 73 78 76
'GPRASP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.49

Table S1506.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
GPRASP1 MUTATED 1 1 1 6 5 2 4
GPRASP1 WILD-TYPE 43 40 16 27 30 29 42
'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.82

Table S1507.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
GPRASP1 MUTATED 4 9 7
GPRASP1 WILD-TYPE 65 70 85
'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.79

Table S1508.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
GPRASP1 MUTATED 9 2 7 2
GPRASP1 WILD-TYPE 64 41 72 43
'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1509.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
GPRASP1 MUTATED 1 2 4
GPRASP1 WILD-TYPE 28 17 60
'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1510.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
GPRASP1 MUTATED 2 3 2
GPRASP1 WILD-TYPE 31 45 29
'REV3L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.76

Table S1511.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
REV3L MUTATED 2 1 0 0
REV3L WILD-TYPE 10 17 11 10
'REV3L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.69

Table S1512.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
REV3L MUTATED 1 0 1 1 0
REV3L WILD-TYPE 11 10 6 6 15
'REV3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.23

Table S1513.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
REV3L MUTATED 0 19 0 0 1
REV3L WILD-TYPE 56 133 11 5 17

Figure S280.  Get High-res Image Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'REV3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.73

Table S1514.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
REV3L MUTATED 2 4 7
REV3L WILD-TYPE 41 35 46
'REV3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.89

Table S1515.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
REV3L MUTATED 5 4 3 2 2 1
REV3L WILD-TYPE 34 32 34 8 38 23
'REV3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1516.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
REV3L MUTATED 6 6 4 1
REV3L WILD-TYPE 59 58 36 16
'REV3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.9

Table S1517.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
REV3L MUTATED 6 9 5
REV3L WILD-TYPE 73 76 78
'REV3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0011 (Fisher's exact test), Q value = 0.032

Table S1518.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
REV3L MUTATED 0 1 1 8 6 1 3
REV3L WILD-TYPE 44 40 16 25 29 30 43

Figure S281.  Get High-res Image Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'REV3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.92

Table S1519.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
REV3L MUTATED 4 8 7
REV3L WILD-TYPE 65 71 85
'REV3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.39

Table S1520.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
REV3L MUTATED 11 2 5 1
REV3L WILD-TYPE 62 41 74 44
'REV3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.72

Table S1521.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
REV3L MUTATED 1 3 6
REV3L WILD-TYPE 28 16 58
'REV3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.69

Table S1522.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
REV3L MUTATED 4 2 4
REV3L WILD-TYPE 29 46 27
'CTNNA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.9

Table S1523.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CTNNA1 MUTATED 1 11 0 0 1
CTNNA1 WILD-TYPE 55 141 11 5 17
'CTNNA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.97

Table S1524.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CTNNA1 MUTATED 3 1 2
CTNNA1 WILD-TYPE 40 38 51
'CTNNA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.59

Table S1525.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CTNNA1 MUTATED 4 1 1 2 1 1
CTNNA1 WILD-TYPE 35 35 36 8 39 23
'CTNNA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1526.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CTNNA1 MUTATED 3 3 3 1
CTNNA1 WILD-TYPE 62 61 37 16
'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.76

Table S1527.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CTNNA1 MUTATED 5 6 2
CTNNA1 WILD-TYPE 74 79 81
'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.25

Table S1528.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CTNNA1 MUTATED 0 1 2 4 4 0 2
CTNNA1 WILD-TYPE 44 40 15 29 31 31 44

Figure S282.  Get High-res Image Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.85

Table S1529.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CTNNA1 MUTATED 4 2 6
CTNNA1 WILD-TYPE 65 77 86
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1530.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CTNNA1 MUTATED 5 1 4 2
CTNNA1 WILD-TYPE 68 42 75 43
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.76

Table S1531.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CTNNA1 MUTATED 1 2 2
CTNNA1 WILD-TYPE 28 17 62
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.92

Table S1532.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CTNNA1 MUTATED 2 1 2
CTNNA1 WILD-TYPE 31 47 29
'MRPL47 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S1533.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MRPL47 MUTATED 1 2 0 0
MRPL47 WILD-TYPE 11 16 11 10
'MRPL47 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.88

Table S1534.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MRPL47 MUTATED 1 1 1 0 0
MRPL47 WILD-TYPE 11 9 6 7 15
'MRPL47 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1535.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MRPL47 MUTATED 1 5 0 0 0
MRPL47 WILD-TYPE 55 147 11 5 18
'MRPL47 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1536.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MRPL47 MUTATED 1 0 2
MRPL47 WILD-TYPE 42 39 51
'MRPL47 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.91

Table S1537.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MRPL47 MUTATED 3 1 1 0 0 1
MRPL47 WILD-TYPE 36 35 36 10 40 23
'MRPL47 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1538.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MRPL47 MUTATED 2 2 1 1
MRPL47 WILD-TYPE 63 62 39 16
'MRPL47 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.88

Table S1539.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MRPL47 MUTATED 3 2 1
MRPL47 WILD-TYPE 76 83 82
'MRPL47 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0738 (Fisher's exact test), Q value = 0.41

Table S1540.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MRPL47 MUTATED 1 0 1 3 1 0 0
MRPL47 WILD-TYPE 43 41 16 30 34 31 46
'MRPL47 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1541.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MRPL47 MUTATED 1 1 2
MRPL47 WILD-TYPE 68 78 90
'MRPL47 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 0.98

Table S1542.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MRPL47 MUTATED 2 1 1 0
MRPL47 WILD-TYPE 71 42 78 45
'DEPDC1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S1543.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
DEPDC1B MUTATED 1 2 0 0
DEPDC1B WILD-TYPE 11 16 11 10
'DEPDC1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.6

Table S1544.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
DEPDC1B MUTATED 2 0 0 1 0
DEPDC1B WILD-TYPE 10 10 7 6 15
'DEPDC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.58

Table S1545.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
DEPDC1B MUTATED 0 11 0 0 0
DEPDC1B WILD-TYPE 56 141 11 5 18
'DEPDC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.97

Table S1546.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
DEPDC1B MUTATED 3 1 2
DEPDC1B WILD-TYPE 40 38 51
'DEPDC1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.22

Table S1547.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
DEPDC1B MUTATED 3 2 0 3 1 2
DEPDC1B WILD-TYPE 36 34 37 7 39 22

Figure S283.  Get High-res Image Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DEPDC1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.78

Table S1548.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
DEPDC1B MUTATED 4 2 3 2
DEPDC1B WILD-TYPE 61 62 37 15
'DEPDC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.69

Table S1549.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
DEPDC1B MUTATED 6 3 2
DEPDC1B WILD-TYPE 73 82 81
'DEPDC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.47

Table S1550.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
DEPDC1B MUTATED 1 0 2 3 3 0 2
DEPDC1B WILD-TYPE 43 41 15 30 32 31 44
'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S1551.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
DEPDC1B MUTATED 3 4 3
DEPDC1B WILD-TYPE 66 75 89
'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.54

Table S1552.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
DEPDC1B MUTATED 6 0 2 2
DEPDC1B WILD-TYPE 67 43 77 43
'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.51

Table S1553.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
DEPDC1B MUTATED 2 2 1
DEPDC1B WILD-TYPE 27 17 63
'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.81

Table S1554.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
DEPDC1B MUTATED 3 1 1
DEPDC1B WILD-TYPE 30 47 30
'CASP8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.76

Table S1555.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CASP8 MUTATED 2 1 0 0
CASP8 WILD-TYPE 10 17 11 10
'CASP8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 0.41

Table S1556.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CASP8 MUTATED 1 0 2 0 0
CASP8 WILD-TYPE 11 10 5 7 15
'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.69

Table S1557.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CASP8 MUTATED 1 14 0 0 2
CASP8 WILD-TYPE 55 138 11 5 16
'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.67

Table S1558.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CASP8 MUTATED 2 1 6
CASP8 WILD-TYPE 41 38 47
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.55

Table S1559.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CASP8 MUTATED 3 6 2 2 1 1
CASP8 WILD-TYPE 36 30 35 8 39 23
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1560.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CASP8 MUTATED 6 5 3 1
CASP8 WILD-TYPE 59 59 37 16
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.93

Table S1561.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CASP8 MUTATED 7 6 4
CASP8 WILD-TYPE 72 79 79
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00383 (Fisher's exact test), Q value = 0.074

Table S1562.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CASP8 MUTATED 0 1 3 3 7 1 2
CASP8 WILD-TYPE 44 40 14 30 28 30 44

Figure S284.  Get High-res Image Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.72

Table S1563.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CASP8 MUTATED 7 3 6
CASP8 WILD-TYPE 62 76 86
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1564.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CASP8 MUTATED 7 2 5 2
CASP8 WILD-TYPE 66 41 74 43
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1565.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CASP8 MUTATED 2 1 4
CASP8 WILD-TYPE 27 18 60
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.95

Table S1566.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CASP8 MUTATED 3 2 2
CASP8 WILD-TYPE 30 46 29
'CACNB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.37

Table S1567.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CACNB4 MUTATED 0 7 0 1 2
CACNB4 WILD-TYPE 56 145 11 4 16
'CACNB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.89

Table S1568.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CACNB4 MUTATED 1 2 4
CACNB4 WILD-TYPE 42 37 49
'CACNB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.97

Table S1569.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CACNB4 MUTATED 1 3 2 1 1 1
CACNB4 WILD-TYPE 38 33 35 9 39 23
'CACNB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1570.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CACNB4 MUTATED 3 3 2 1
CACNB4 WILD-TYPE 62 61 38 16
'CACNB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.8

Table S1571.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CACNB4 MUTATED 5 3 2
CACNB4 WILD-TYPE 74 82 81
'CACNB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.16

Table S1572.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CACNB4 MUTATED 1 0 0 4 4 1 0
CACNB4 WILD-TYPE 43 41 17 29 31 30 46

Figure S285.  Get High-res Image Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CACNB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.57

Table S1573.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CACNB4 MUTATED 1 6 3
CACNB4 WILD-TYPE 68 73 89
'CACNB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.79

Table S1574.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CACNB4 MUTATED 5 0 3 2
CACNB4 WILD-TYPE 68 43 76 43
'CACNB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.76

Table S1575.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CACNB4 MUTATED 1 1 1
CACNB4 WILD-TYPE 28 18 63
'CACNB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.49

Table S1576.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CACNB4 MUTATED 1 0 2
CACNB4 WILD-TYPE 32 48 29
'BHLHB9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.77

Table S1577.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
BHLHB9 MUTATED 0 7 0 0 1
BHLHB9 WILD-TYPE 56 145 11 5 17
'BHLHB9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1578.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
BHLHB9 MUTATED 1 1 2
BHLHB9 WILD-TYPE 42 38 51
'BHLHB9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S1579.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
BHLHB9 MUTATED 1 2 1 0 2 1
BHLHB9 WILD-TYPE 38 34 36 10 38 23
'BHLHB9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.86

Table S1580.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
BHLHB9 MUTATED 3 3 0 1
BHLHB9 WILD-TYPE 62 61 40 16
'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.51

Table S1581.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
BHLHB9 MUTATED 4 4 0
BHLHB9 WILD-TYPE 75 81 83
'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0363 (Fisher's exact test), Q value = 0.29

Table S1582.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
BHLHB9 MUTATED 1 0 1 3 3 0 0
BHLHB9 WILD-TYPE 43 41 16 30 32 31 46

Figure S286.  Get High-res Image Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.69

Table S1583.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
BHLHB9 MUTATED 3 4 1
BHLHB9 WILD-TYPE 66 75 91
'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.55

Table S1584.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
BHLHB9 MUTATED 5 0 1 2
BHLHB9 WILD-TYPE 68 43 78 43
'C22ORF25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.88

Table S1585.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
C22ORF25 MUTATED 0 6 0 0 0
C22ORF25 WILD-TYPE 56 146 11 5 18
'C22ORF25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1586.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C22ORF25 MUTATED 1 1 1 0 1 1
C22ORF25 WILD-TYPE 38 35 36 10 39 23
'C22ORF25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.93

Table S1587.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C22ORF25 MUTATED 1 2 1 1
C22ORF25 WILD-TYPE 64 62 39 16
'C22ORF25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.31

Table S1588.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
C22ORF25 MUTATED 1 5 0
C22ORF25 WILD-TYPE 78 80 83

Figure S287.  Get High-res Image Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C22ORF25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.39

Table S1589.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
C22ORF25 MUTATED 0 1 1 3 1 0 0
C22ORF25 WILD-TYPE 44 40 16 30 34 31 46
'C22ORF25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.39

Table S1590.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
C22ORF25 MUTATED 2 4 0
C22ORF25 WILD-TYPE 67 75 92
'C22ORF25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1591.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
C22ORF25 MUTATED 3 1 1 1
C22ORF25 WILD-TYPE 70 42 78 44
'GALNT7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.97

Table S1592.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
GALNT7 MUTATED 2 1 1 0
GALNT7 WILD-TYPE 10 17 10 10
'GALNT7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 0.44

Table S1593.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
GALNT7 MUTATED 1 0 2 1 0
GALNT7 WILD-TYPE 11 10 5 6 15
'GALNT7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.96

Table S1594.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
GALNT7 MUTATED 1 9 0 0 1
GALNT7 WILD-TYPE 55 143 11 5 17
'GALNT7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1595.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
GALNT7 MUTATED 1 0 2
GALNT7 WILD-TYPE 42 39 51
'GALNT7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S1596.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
GALNT7 MUTATED 1 2 2 1 2 0
GALNT7 WILD-TYPE 38 34 35 9 38 24
'GALNT7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1597.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
GALNT7 MUTATED 2 4 2 0
GALNT7 WILD-TYPE 63 60 38 17
'GALNT7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.76

Table S1598.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
GALNT7 MUTATED 3 6 2
GALNT7 WILD-TYPE 76 79 81
'GALNT7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 0.34

Table S1599.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
GALNT7 MUTATED 1 1 0 4 4 1 0
GALNT7 WILD-TYPE 43 40 17 29 31 30 46
'GALNT7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.97

Table S1600.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
GALNT7 MUTATED 3 5 3
GALNT7 WILD-TYPE 66 74 89
'GALNT7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0726 (Fisher's exact test), Q value = 0.41

Table S1601.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
GALNT7 MUTATED 7 2 2 0
GALNT7 WILD-TYPE 66 41 77 45
'GALNT7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1602.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
GALNT7 MUTATED 1 0 2
GALNT7 WILD-TYPE 28 19 62
'GALNT7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.49

Table S1603.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
GALNT7 MUTATED 1 0 2
GALNT7 WILD-TYPE 32 48 29
'LGMN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.76

Table S1604.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
LGMN MUTATED 2 1 0 0
LGMN WILD-TYPE 10 17 11 10
'LGMN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.41

Table S1605.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
LGMN MUTATED 1 0 2 0 0
LGMN WILD-TYPE 11 10 5 7 15
'LGMN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.79

Table S1606.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
LGMN MUTATED 0 6 0 0 1
LGMN WILD-TYPE 56 146 11 5 17
'LGMN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.2

Table S1607.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
LGMN MUTATED 1 3 0 2 0 1
LGMN WILD-TYPE 38 33 37 8 40 23

Figure S288.  Get High-res Image Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LGMN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S1608.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
LGMN MUTATED 3 2 1 1
LGMN WILD-TYPE 62 62 39 16
'LGMN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.54

Table S1609.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
LGMN MUTATED 3 4 0
LGMN WILD-TYPE 76 81 83
'LGMN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00121 (Fisher's exact test), Q value = 0.035

Table S1610.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
LGMN MUTATED 0 0 1 0 5 1 0
LGMN WILD-TYPE 44 41 16 33 30 30 46

Figure S289.  Get High-res Image Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LGMN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1611.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
LGMN MUTATED 2 2 2
LGMN WILD-TYPE 67 77 90
'LGMN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.52

Table S1612.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
LGMN MUTATED 4 1 0 1
LGMN WILD-TYPE 69 42 79 44
'EPS8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.96

Table S1613.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
EPS8 MUTATED 1 9 0 0 1
EPS8 WILD-TYPE 55 143 11 5 17
'EPS8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.72

Table S1614.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EPS8 MUTATED 3 0 3
EPS8 WILD-TYPE 40 39 50
'EPS8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1615.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EPS8 MUTATED 4 2 1 0 2 1
EPS8 WILD-TYPE 35 34 36 10 38 23
'EPS8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S1616.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EPS8 MUTATED 3 4 2 1
EPS8 WILD-TYPE 62 60 38 16
'EPS8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.82

Table S1617.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
EPS8 MUTATED 5 5 2
EPS8 WILD-TYPE 74 80 81
'EPS8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.57

Table S1618.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
EPS8 MUTATED 1 2 1 4 3 1 0
EPS8 WILD-TYPE 43 39 16 29 32 30 46
'EPS8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.82

Table S1619.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
EPS8 MUTATED 3 6 3
EPS8 WILD-TYPE 66 73 89
'EPS8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S1620.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
EPS8 MUTATED 4 3 3 2
EPS8 WILD-TYPE 69 40 76 43
'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.72

Table S1621.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
EPS8 MUTATED 2 2 2
EPS8 WILD-TYPE 27 17 62
'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.76

Table S1622.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
EPS8 MUTATED 2 1 3
EPS8 WILD-TYPE 31 47 28
'TGOLN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 0.99

Table S1623.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TGOLN2 MUTATED 0 3 0 0 0
TGOLN2 WILD-TYPE 56 149 11 5 18
'TGOLN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.72

Table S1624.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TGOLN2 MUTATED 0 2 1 0 0 0
TGOLN2 WILD-TYPE 39 34 36 10 40 24
'TGOLN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.92

Table S1625.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TGOLN2 MUTATED 2 0 1 0
TGOLN2 WILD-TYPE 63 64 39 17
'TGOLN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.61

Table S1626.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TGOLN2 MUTATED 2 0 1
TGOLN2 WILD-TYPE 77 85 82
'TGOLN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.53

Table S1627.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TGOLN2 MUTATED 0 0 1 1 1 0 0
TGOLN2 WILD-TYPE 44 41 16 32 34 31 46
'TGOLN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1628.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TGOLN2 MUTATED 1 1 1
TGOLN2 WILD-TYPE 68 78 91
'TGOLN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1629.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TGOLN2 MUTATED 1 0 1 1
TGOLN2 WILD-TYPE 72 43 78 44
'TPX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.79

Table S1630.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
TPX2 MUTATED 0 5 0 0 1
TPX2 WILD-TYPE 56 147 11 5 17
'TPX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S1631.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TPX2 MUTATED 2 1 1
TPX2 WILD-TYPE 41 38 52
'TPX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.79

Table S1632.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TPX2 MUTATED 3 2 0 0 1 0
TPX2 WILD-TYPE 36 34 37 10 39 24
'TPX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.76

Table S1633.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TPX2 MUTATED 2 4 0 0
TPX2 WILD-TYPE 63 60 40 17
'TPX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 0.43

Table S1634.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
TPX2 MUTATED 4 2 0
TPX2 WILD-TYPE 75 83 83
'TPX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.56

Table S1635.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
TPX2 MUTATED 1 0 1 2 2 0 0
TPX2 WILD-TYPE 43 41 16 31 33 31 46
'TPX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.2

Table S1636.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
TPX2 MUTATED 1 5 0
TPX2 WILD-TYPE 68 74 92

Figure S290.  Get High-res Image Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TPX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.52

Table S1637.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
TPX2 MUTATED 4 1 0 1
TPX2 WILD-TYPE 69 42 79 44
'TPX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.31

Table S1638.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
TPX2 MUTATED 1 2 0
TPX2 WILD-TYPE 28 17 64

Figure S291.  Get High-res Image Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TPX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.58

Table S1639.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
TPX2 MUTATED 2 0 1
TPX2 WILD-TYPE 31 48 30
'C14ORF118 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.97

Table S1640.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C14ORF118 MUTATED 2 1 1 0
C14ORF118 WILD-TYPE 10 17 10 10
'C14ORF118 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.093 (Fisher's exact test), Q value = 0.44

Table S1641.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C14ORF118 MUTATED 1 0 2 1 0
C14ORF118 WILD-TYPE 11 10 5 6 15
'C14ORF118 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.36

Table S1642.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
C14ORF118 MUTATED 0 15 0 0 0
C14ORF118 WILD-TYPE 56 137 11 5 18
'C14ORF118 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.94

Table S1643.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C14ORF118 MUTATED 2 4 3
C14ORF118 WILD-TYPE 41 35 50
'C14ORF118 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 0.43

Table S1644.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C14ORF118 MUTATED 6 4 1 1 1 0
C14ORF118 WILD-TYPE 33 32 36 9 39 24
'C14ORF118 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.69

Table S1645.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C14ORF118 MUTATED 8 3 2 0
C14ORF118 WILD-TYPE 57 61 38 17
'C14ORF118 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1646.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
C14ORF118 MUTATED 5 4 6
C14ORF118 WILD-TYPE 74 81 77
'C14ORF118 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.51

Table S1647.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
C14ORF118 MUTATED 1 0 1 4 4 3 2
C14ORF118 WILD-TYPE 43 41 16 29 31 28 44
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.73

Table S1648.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
C14ORF118 MUTATED 2 7 5
C14ORF118 WILD-TYPE 67 72 87
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.96

Table S1649.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
C14ORF118 MUTATED 6 1 5 2
C14ORF118 WILD-TYPE 67 42 74 43
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.9

Table S1650.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
C14ORF118 MUTATED 2 2 3
C14ORF118 WILD-TYPE 27 17 61
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1651.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
C14ORF118 MUTATED 2 3 2
C14ORF118 WILD-TYPE 31 45 29
'SLC34A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.79

Table S1652.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SLC34A3 MUTATED 0 5 0 0 1
SLC34A3 WILD-TYPE 56 147 11 5 17
'SLC34A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.81

Table S1653.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SLC34A3 MUTATED 2 0 3
SLC34A3 WILD-TYPE 41 39 50
'SLC34A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.82

Table S1654.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SLC34A3 MUTATED 3 1 1 0 0 0
SLC34A3 WILD-TYPE 36 35 36 10 40 24
'SLC34A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1655.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SLC34A3 MUTATED 2 2 1 0
SLC34A3 WILD-TYPE 63 62 39 17
'SLC34A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.81

Table S1656.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SLC34A3 MUTATED 3 1 2
SLC34A3 WILD-TYPE 76 84 81
'SLC34A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0418 (Fisher's exact test), Q value = 0.31

Table S1657.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SLC34A3 MUTATED 0 0 1 3 1 1 0
SLC34A3 WILD-TYPE 44 41 16 30 34 30 46

Figure S292.  Get High-res Image Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.76

Table S1658.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SLC34A3 MUTATED 3 2 1
SLC34A3 WILD-TYPE 66 77 91
'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.69

Table S1659.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SLC34A3 MUTATED 4 0 2 0
SLC34A3 WILD-TYPE 69 43 77 45
'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.76

Table S1660.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
SLC34A3 MUTATED 1 2 2
SLC34A3 WILD-TYPE 28 17 62
'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0769 (Fisher's exact test), Q value = 0.41

Table S1661.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
SLC34A3 MUTATED 2 0 3
SLC34A3 WILD-TYPE 31 48 28
'ZNF662 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.76

Table S1662.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF662 MUTATED 2 1 0 0
ZNF662 WILD-TYPE 10 17 11 10
'ZNF662 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.69

Table S1663.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF662 MUTATED 1 0 1 1 0
ZNF662 WILD-TYPE 11 10 6 6 15
'ZNF662 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.81

Table S1664.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF662 MUTATED 1 10 0 0 2
ZNF662 WILD-TYPE 55 142 11 5 16
'ZNF662 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.53

Table S1665.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF662 MUTATED 3 0 5
ZNF662 WILD-TYPE 40 39 48
'ZNF662 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1666.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF662 MUTATED 3 3 2 1 1 1
ZNF662 WILD-TYPE 36 33 35 9 39 23
'ZNF662 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.81

Table S1667.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF662 MUTATED 2 6 2 1
ZNF662 WILD-TYPE 63 58 38 16
'ZNF662 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.39

Table S1668.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF662 MUTATED 7 5 1
ZNF662 WILD-TYPE 72 80 82
'ZNF662 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0022

Table S1669.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF662 MUTATED 0 0 2 6 5 0 0
ZNF662 WILD-TYPE 44 41 15 27 30 31 46

Figure S293.  Get High-res Image Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF662 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.9

Table S1670.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF662 MUTATED 4 5 3
ZNF662 WILD-TYPE 65 74 89
'ZNF662 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.68

Table S1671.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF662 MUTATED 7 1 2 2
ZNF662 WILD-TYPE 66 42 77 43
'ZNF662 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.76

Table S1672.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF662 MUTATED 1 2 2
ZNF662 WILD-TYPE 28 17 62
'ZNF662 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0779 (Fisher's exact test), Q value = 0.41

Table S1673.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF662 MUTATED 2 0 3
ZNF662 WILD-TYPE 31 48 28
'ZDBF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.76

Table S1674.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZDBF2 MUTATED 2 3 0 0
ZDBF2 WILD-TYPE 10 15 11 10
'ZDBF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.49

Table S1675.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZDBF2 MUTATED 3 0 1 1 0
ZDBF2 WILD-TYPE 9 10 6 6 15
'ZDBF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.37

Table S1676.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZDBF2 MUTATED 0 15 1 0 2
ZDBF2 WILD-TYPE 56 137 10 5 16
'ZDBF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1677.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZDBF2 MUTATED 3 2 5
ZDBF2 WILD-TYPE 40 37 48
'ZDBF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.89

Table S1678.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZDBF2 MUTATED 4 6 3 1 2 1
ZDBF2 WILD-TYPE 35 30 34 9 38 23
'ZDBF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S1679.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZDBF2 MUTATED 6 7 3 1
ZDBF2 WILD-TYPE 59 57 37 16
'ZDBF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.41

Table S1680.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZDBF2 MUTATED 9 7 2
ZDBF2 WILD-TYPE 70 78 81
'ZDBF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S1681.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZDBF2 MUTATED 1 0 2 7 7 0 1
ZDBF2 WILD-TYPE 43 41 15 26 28 31 45

Figure S294.  Get High-res Image Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.59

Table S1682.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZDBF2 MUTATED 4 9 4
ZDBF2 WILD-TYPE 65 70 88
'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 0.41

Table S1683.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZDBF2 MUTATED 10 1 3 3
ZDBF2 WILD-TYPE 63 42 76 42
'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1684.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZDBF2 MUTATED 1 2 4
ZDBF2 WILD-TYPE 28 17 60
'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.73

Table S1685.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZDBF2 MUTATED 3 1 3
ZDBF2 WILD-TYPE 30 47 28
'SFRP4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.76

Table S1686.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SFRP4 MUTATED 2 1 0 0
SFRP4 WILD-TYPE 10 17 11 10
'SFRP4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.69

Table S1687.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SFRP4 MUTATED 1 0 1 1 0
SFRP4 WILD-TYPE 11 10 6 6 15
'SFRP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.59

Table S1688.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SFRP4 MUTATED 0 6 0 0 2
SFRP4 WILD-TYPE 56 146 11 5 16
'SFRP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.82

Table S1689.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SFRP4 MUTATED 0 2 2
SFRP4 WILD-TYPE 43 37 51
'SFRP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.81

Table S1690.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SFRP4 MUTATED 1 2 0 0 3 0
SFRP4 WILD-TYPE 38 34 37 10 37 24
'SFRP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.76

Table S1691.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SFRP4 MUTATED 2 4 0 0
SFRP4 WILD-TYPE 63 60 40 17
'SFRP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.58

Table S1692.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SFRP4 MUTATED 5 2 1
SFRP4 WILD-TYPE 74 83 82
'SFRP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 0.38

Table S1693.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SFRP4 MUTATED 1 0 0 2 4 1 0
SFRP4 WILD-TYPE 43 41 17 31 31 30 46
'SFRP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.51

Table S1694.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SFRP4 MUTATED 1 5 1
SFRP4 WILD-TYPE 68 74 91
'SFRP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S1695.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SFRP4 MUTATED 3 1 2 1
SFRP4 WILD-TYPE 70 42 77 44
'CCDC146 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1696.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CCDC146 MUTATED 1 2 1 0
CCDC146 WILD-TYPE 11 16 10 10
'CCDC146 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0474 (Fisher's exact test), Q value = 0.33

Table S1697.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CCDC146 MUTATED 2 0 2 0 0
CCDC146 WILD-TYPE 10 10 5 7 15

Figure S295.  Get High-res Image Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CCDC146 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.51

Table S1698.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CCDC146 MUTATED 0 12 0 0 2
CCDC146 WILD-TYPE 56 140 11 5 16
'CCDC146 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.95

Table S1699.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC146 MUTATED 2 1 4
CCDC146 WILD-TYPE 41 38 49
'CCDC146 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.51

Table S1700.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC146 MUTATED 4 4 3 1 0 0
CCDC146 WILD-TYPE 35 32 34 9 40 24
'CCDC146 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1701.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC146 MUTATED 4 5 3 0
CCDC146 WILD-TYPE 61 59 37 17
'CCDC146 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.89

Table S1702.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CCDC146 MUTATED 6 5 3
CCDC146 WILD-TYPE 73 80 80
'CCDC146 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00093 (Fisher's exact test), Q value = 0.029

Table S1703.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CCDC146 MUTATED 0 0 1 5 6 1 1
CCDC146 WILD-TYPE 44 41 16 28 29 30 45

Figure S296.  Get High-res Image Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC146 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.71

Table S1704.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CCDC146 MUTATED 3 7 3
CCDC146 WILD-TYPE 66 72 89
'CCDC146 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.76

Table S1705.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CCDC146 MUTATED 7 1 3 2
CCDC146 WILD-TYPE 66 42 76 43
'CCDC146 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.58

Table S1706.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CCDC146 MUTATED 0 2 3
CCDC146 WILD-TYPE 29 17 61
'CCDC146 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.73

Table S1707.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CCDC146 MUTATED 1 1 3
CCDC146 WILD-TYPE 32 47 28
'C7ORF60 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.76

Table S1708.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C7ORF60 MUTATED 2 1 0 0
C7ORF60 WILD-TYPE 10 17 11 10
'C7ORF60 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.69

Table S1709.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C7ORF60 MUTATED 1 0 1 1 0
C7ORF60 WILD-TYPE 11 10 6 6 15
'C7ORF60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.69

Table S1710.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
C7ORF60 MUTATED 0 10 0 0 0
C7ORF60 WILD-TYPE 56 142 11 5 18
'C7ORF60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1711.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C7ORF60 MUTATED 2 1 2
C7ORF60 WILD-TYPE 41 38 51
'C7ORF60 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S1712.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C7ORF60 MUTATED 3 2 1 0 3 0
C7ORF60 WILD-TYPE 36 34 36 10 37 24
'C7ORF60 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S1713.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C7ORF60 MUTATED 3 4 2 0
C7ORF60 WILD-TYPE 62 60 38 17
'C7ORF60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.65

Table S1714.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
C7ORF60 MUTATED 5 4 1
C7ORF60 WILD-TYPE 74 81 82
'C7ORF60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.22

Table S1715.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
C7ORF60 MUTATED 1 1 1 5 2 0 0
C7ORF60 WILD-TYPE 43 40 16 28 33 31 46

Figure S297.  Get High-res Image Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.21

Table S1716.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
C7ORF60 MUTATED 1 7 1
C7ORF60 WILD-TYPE 68 72 91

Figure S298.  Get High-res Image Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.86

Table S1717.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
C7ORF60 MUTATED 4 2 1 2
C7ORF60 WILD-TYPE 69 41 78 43
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.52

Table S1718.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
C7ORF60 MUTATED 1 2 1
C7ORF60 WILD-TYPE 28 17 63
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.57

Table S1719.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
C7ORF60 MUTATED 2 0 2
C7ORF60 WILD-TYPE 31 48 29
'ZNF649 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.88

Table S1720.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF649 MUTATED 2 2 0 0
ZNF649 WILD-TYPE 10 16 11 10
'ZNF649 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.66

Table S1721.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF649 MUTATED 2 0 1 1 0
ZNF649 WILD-TYPE 10 10 6 6 15
'ZNF649 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 0.44

Table S1722.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF649 MUTATED 0 14 0 0 0
ZNF649 WILD-TYPE 56 138 11 5 18
'ZNF649 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1723.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF649 MUTATED 2 2 3
ZNF649 WILD-TYPE 41 37 50
'ZNF649 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1724.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF649 MUTATED 5 3 2 1 2 1
ZNF649 WILD-TYPE 34 33 35 9 38 23
'ZNF649 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1725.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF649 MUTATED 5 5 3 1
ZNF649 WILD-TYPE 60 59 37 16
'ZNF649 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S1726.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF649 MUTATED 5 5 4
ZNF649 WILD-TYPE 74 80 79
'ZNF649 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.18

Table S1727.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF649 MUTATED 1 0 1 6 3 0 3
ZNF649 WILD-TYPE 43 41 16 27 32 31 43

Figure S299.  Get High-res Image Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF649 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.53

Table S1728.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF649 MUTATED 1 7 5
ZNF649 WILD-TYPE 68 72 87
'ZNF649 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1729.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF649 MUTATED 5 1 4 3
ZNF649 WILD-TYPE 68 42 75 42
'ZNF649 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.76

Table S1730.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF649 MUTATED 1 2 2
ZNF649 WILD-TYPE 28 17 62
'ZNF649 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.92

Table S1731.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF649 MUTATED 2 1 2
ZNF649 WILD-TYPE 31 47 29
'RASSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.77

Table S1732.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RASSF9 MUTATED 0 7 0 0 1
RASSF9 WILD-TYPE 56 145 11 5 17
'RASSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1733.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RASSF9 MUTATED 1 0 2
RASSF9 WILD-TYPE 42 39 51
'RASSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.99

Table S1734.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RASSF9 MUTATED 2 3 1 0 1 0
RASSF9 WILD-TYPE 37 33 36 10 39 24
'RASSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1735.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RASSF9 MUTATED 3 3 1 0
RASSF9 WILD-TYPE 62 61 39 17
'RASSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.95

Table S1736.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RASSF9 MUTATED 4 3 2
RASSF9 WILD-TYPE 75 82 81
'RASSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0493 (Fisher's exact test), Q value = 0.33

Table S1737.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RASSF9 MUTATED 0 1 0 3 4 0 1
RASSF9 WILD-TYPE 44 40 17 30 31 31 45

Figure S300.  Get High-res Image Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RASSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.88

Table S1738.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RASSF9 MUTATED 1 4 3
RASSF9 WILD-TYPE 68 75 89
'RASSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1739.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RASSF9 MUTATED 2 2 3 1
RASSF9 WILD-TYPE 71 41 76 44
'NIPA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.79

Table S1740.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
NIPA2 MUTATED 0 8 0 0 0
NIPA2 WILD-TYPE 56 144 11 5 18
'NIPA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S1741.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NIPA2 MUTATED 2 1 1
NIPA2 WILD-TYPE 41 38 52
'NIPA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.68

Table S1742.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NIPA2 MUTATED 3 0 1 1 1 0
NIPA2 WILD-TYPE 36 36 36 9 39 24
'NIPA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1743.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NIPA2 MUTATED 2 2 2 0
NIPA2 WILD-TYPE 63 62 38 17
'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1744.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
NIPA2 MUTATED 2 3 3
NIPA2 WILD-TYPE 77 82 80
'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.31

Table S1745.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
NIPA2 MUTATED 0 1 2 1 1 3 0
NIPA2 WILD-TYPE 44 40 15 32 34 28 46

Figure S301.  Get High-res Image Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1746.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
NIPA2 MUTATED 3 2 3
NIPA2 WILD-TYPE 66 77 89
'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S1747.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
NIPA2 MUTATED 3 1 2 2
NIPA2 WILD-TYPE 70 42 77 43
'NIPA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.77

Table S1748.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
NIPA2 MUTATED 1 1 1
NIPA2 WILD-TYPE 28 18 63
'NIPA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.82

Table S1749.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
NIPA2 MUTATED 2 1 0
NIPA2 WILD-TYPE 31 47 31
'FILIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.88

Table S1750.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
FILIP1 MUTATED 2 2 0 0
FILIP1 WILD-TYPE 10 16 11 10
'FILIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.66

Table S1751.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
FILIP1 MUTATED 2 0 1 1 0
FILIP1 WILD-TYPE 10 10 6 6 15
'FILIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.71

Table S1752.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
FILIP1 MUTATED 1 13 0 0 2
FILIP1 WILD-TYPE 55 139 11 5 16
'FILIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.76

Table S1753.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FILIP1 MUTATED 2 1 5
FILIP1 WILD-TYPE 41 38 48
'FILIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.21

Table S1754.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FILIP1 MUTATED 4 6 0 2 1 1
FILIP1 WILD-TYPE 35 30 37 8 39 23

Figure S302.  Get High-res Image Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FILIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S1755.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FILIP1 MUTATED 6 5 2 1
FILIP1 WILD-TYPE 59 59 38 16
'FILIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1756.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
FILIP1 MUTATED 6 6 4
FILIP1 WILD-TYPE 73 79 79
'FILIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00244 (Fisher's exact test), Q value = 0.055

Table S1757.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
FILIP1 MUTATED 0 0 1 4 7 1 3
FILIP1 WILD-TYPE 44 41 16 29 28 30 43

Figure S303.  Get High-res Image Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FILIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1758.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
FILIP1 MUTATED 4 6 5
FILIP1 WILD-TYPE 65 73 87
'FILIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.51

Table S1759.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
FILIP1 MUTATED 9 1 3 2
FILIP1 WILD-TYPE 64 42 76 43
'FILIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.9

Table S1760.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
FILIP1 MUTATED 2 1 2
FILIP1 WILD-TYPE 27 18 62
'FILIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1761.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
FILIP1 MUTATED 2 2 1
FILIP1 WILD-TYPE 31 46 30
'PHKA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1762.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PHKA2 MUTATED 2 2 1 1
PHKA2 WILD-TYPE 10 16 10 9
'PHKA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.97

Table S1763.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PHKA2 MUTATED 1 1 1 2 1
PHKA2 WILD-TYPE 11 9 6 5 14
'PHKA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.09 (Fisher's exact test), Q value = 0.44

Table S1764.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PHKA2 MUTATED 0 13 0 0 2
PHKA2 WILD-TYPE 56 139 11 5 16
'PHKA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.59

Table S1765.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PHKA2 MUTATED 1 0 4
PHKA2 WILD-TYPE 42 39 49
'PHKA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1766.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PHKA2 MUTATED 1 3 2 1 3 2
PHKA2 WILD-TYPE 38 33 35 9 37 22
'PHKA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.78

Table S1767.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PHKA2 MUTATED 2 5 3 2
PHKA2 WILD-TYPE 63 59 37 15
'PHKA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.43

Table S1768.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PHKA2 MUTATED 5 9 2
PHKA2 WILD-TYPE 74 76 81
'PHKA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.02

Table S1769.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PHKA2 MUTATED 1 2 0 8 4 1 0
PHKA2 WILD-TYPE 43 39 17 25 31 30 46

Figure S304.  Get High-res Image Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PHKA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.59

Table S1770.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PHKA2 MUTATED 5 8 3
PHKA2 WILD-TYPE 64 71 89
'PHKA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.27

Table S1771.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PHKA2 MUTATED 10 1 2 3
PHKA2 WILD-TYPE 63 42 77 42

Figure S305.  Get High-res Image Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PHKA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.69

Table S1772.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
PHKA2 MUTATED 2 1 1
PHKA2 WILD-TYPE 27 18 63
'PHKA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0355 (Fisher's exact test), Q value = 0.28

Table S1773.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
PHKA2 MUTATED 1 0 3
PHKA2 WILD-TYPE 32 48 28

Figure S306.  Get High-res Image Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'COBLL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.88

Table S1774.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
COBLL1 MUTATED 2 2 0 0
COBLL1 WILD-TYPE 10 16 11 10
'COBLL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.66

Table S1775.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
COBLL1 MUTATED 2 0 1 1 0
COBLL1 WILD-TYPE 10 10 6 6 15
'COBLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.82

Table S1776.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
COBLL1 MUTATED 1 13 0 0 1
COBLL1 WILD-TYPE 55 139 11 5 17
'COBLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.53

Table S1777.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
COBLL1 MUTATED 3 0 5
COBLL1 WILD-TYPE 40 39 48
'COBLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1778.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
COBLL1 MUTATED 4 4 2 1 2 1
COBLL1 WILD-TYPE 35 32 35 9 38 23
'COBLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S1779.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
COBLL1 MUTATED 4 6 3 1
COBLL1 WILD-TYPE 61 58 37 16
'COBLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.6

Table S1780.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
COBLL1 MUTATED 6 7 2
COBLL1 WILD-TYPE 73 78 81
'COBLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00105 (Fisher's exact test), Q value = 0.031

Table S1781.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
COBLL1 MUTATED 0 1 2 6 5 0 1
COBLL1 WILD-TYPE 44 40 15 27 30 31 45

Figure S307.  Get High-res Image Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COBLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.79

Table S1782.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
COBLL1 MUTATED 3 7 4
COBLL1 WILD-TYPE 66 72 88
'COBLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.72

Table S1783.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
COBLL1 MUTATED 7 2 2 3
COBLL1 WILD-TYPE 66 41 77 42
'COBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.76

Table S1784.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
COBLL1 MUTATED 1 2 2
COBLL1 WILD-TYPE 28 17 62
'COBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.93

Table S1785.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
COBLL1 MUTATED 2 1 2
COBLL1 WILD-TYPE 31 47 29
'AGPAT9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.79

Table S1786.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
AGPAT9 MUTATED 0 8 0 0 0
AGPAT9 WILD-TYPE 56 144 11 5 18
'AGPAT9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.49

Table S1787.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
AGPAT9 MUTATED 0 0 3
AGPAT9 WILD-TYPE 43 39 50
'AGPAT9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.52

Table S1788.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
AGPAT9 MUTATED 2 2 1 2 0 1
AGPAT9 WILD-TYPE 37 34 36 8 40 23
'AGPAT9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.79

Table S1789.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
AGPAT9 MUTATED 3 1 3 1
AGPAT9 WILD-TYPE 62 63 37 16
'AGPAT9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.26

Table S1790.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
AGPAT9 MUTATED 0 6 2
AGPAT9 WILD-TYPE 79 79 81

Figure S308.  Get High-res Image Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'AGPAT9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.52

Table S1791.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
AGPAT9 MUTATED 0 0 0 3 2 2 1
AGPAT9 WILD-TYPE 44 41 17 30 33 29 45
'AGPAT9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1792.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
AGPAT9 MUTATED 2 3 3
AGPAT9 WILD-TYPE 67 76 89
'AGPAT9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.68

Table S1793.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
AGPAT9 MUTATED 5 1 1 1
AGPAT9 WILD-TYPE 68 42 78 44
'NOP56 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 0.39

Table S1794.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
NOP56 MUTATED 0 8 0 0 3
NOP56 WILD-TYPE 56 144 11 5 15
'NOP56 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.95

Table S1795.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NOP56 MUTATED 2 1 4
NOP56 WILD-TYPE 41 38 49
'NOP56 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0093 (Fisher's exact test), Q value = 0.13

Table S1796.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NOP56 MUTATED 5 4 0 1 0 0
NOP56 WILD-TYPE 34 32 37 9 40 24

Figure S309.  Get High-res Image Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NOP56 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.82

Table S1797.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NOP56 MUTATED 6 3 1 0
NOP56 WILD-TYPE 59 61 39 17
'NOP56 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.69

Table S1798.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
NOP56 MUTATED 6 2 3
NOP56 WILD-TYPE 73 83 80
'NOP56 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.51

Table S1799.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
NOP56 MUTATED 1 0 1 1 4 3 1
NOP56 WILD-TYPE 43 41 16 32 31 28 45
'NOP56 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1800.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
NOP56 MUTATED 4 4 3
NOP56 WILD-TYPE 65 75 89
'NOP56 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0975 (Fisher's exact test), Q value = 0.46

Table S1801.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
NOP56 MUTATED 7 0 3 1
NOP56 WILD-TYPE 66 43 76 44
'NOP56 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.52

Table S1802.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
NOP56 MUTATED 1 2 1
NOP56 WILD-TYPE 28 17 63
'NOP56 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1803.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
NOP56 MUTATED 2 1 1
NOP56 WILD-TYPE 31 47 30
'RBL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.88

Table S1804.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RBL2 MUTATED 2 2 0 0
RBL2 WILD-TYPE 10 16 11 10
'RBL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.66

Table S1805.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RBL2 MUTATED 2 0 1 1 0
RBL2 WILD-TYPE 10 10 6 6 15
'RBL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.54

Table S1806.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
RBL2 MUTATED 0 10 0 0 2
RBL2 WILD-TYPE 56 142 11 5 16
'RBL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1807.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RBL2 MUTATED 1 2 2
RBL2 WILD-TYPE 42 37 51
'RBL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.88

Table S1808.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RBL2 MUTATED 3 3 3 1 1 0
RBL2 WILD-TYPE 36 33 34 9 39 24
'RBL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.9

Table S1809.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RBL2 MUTATED 3 4 4 0
RBL2 WILD-TYPE 62 60 36 17
'RBL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.75

Table S1810.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
RBL2 MUTATED 4 6 2
RBL2 WILD-TYPE 75 79 81
'RBL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00176 (Fisher's exact test), Q value = 0.045

Table S1811.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
RBL2 MUTATED 0 0 0 5 5 1 1
RBL2 WILD-TYPE 44 41 17 28 30 30 45

Figure S310.  Get High-res Image Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.54

Table S1812.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
RBL2 MUTATED 3 7 2
RBL2 WILD-TYPE 66 72 90
'RBL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.69

Table S1813.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
RBL2 MUTATED 7 1 3 1
RBL2 WILD-TYPE 66 42 76 44
'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.85

Table S1814.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
RBL2 MUTATED 0 1 3
RBL2 WILD-TYPE 29 18 61
'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1815.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
RBL2 MUTATED 1 2 1
RBL2 WILD-TYPE 32 46 30
'ABCC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S1816.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ABCC6 MUTATED 2 1 1 0
ABCC6 WILD-TYPE 10 17 10 10
'ABCC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00911 (Fisher's exact test), Q value = 0.13

Table S1817.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ABCC6 MUTATED 1 0 3 0 0
ABCC6 WILD-TYPE 11 10 4 7 15

Figure S311.  Get High-res Image Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ABCC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.54

Table S1818.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ABCC6 MUTATED 0 12 0 0 0
ABCC6 WILD-TYPE 56 140 11 5 18
'ABCC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1819.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ABCC6 MUTATED 1 2 2
ABCC6 WILD-TYPE 42 37 51
'ABCC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.41

Table S1820.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ABCC6 MUTATED 4 2 1 2 0 2
ABCC6 WILD-TYPE 35 34 36 8 40 22
'ABCC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.88

Table S1821.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ABCC6 MUTATED 6 3 1 1
ABCC6 WILD-TYPE 59 61 39 16
'ABCC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.93

Table S1822.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ABCC6 MUTATED 3 6 3
ABCC6 WILD-TYPE 76 79 80
'ABCC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.76

Table S1823.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ABCC6 MUTATED 0 1 1 3 3 2 2
ABCC6 WILD-TYPE 44 40 16 30 32 29 44
'ABCC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.72

Table S1824.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ABCC6 MUTATED 1 4 6
ABCC6 WILD-TYPE 68 75 86
'ABCC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 0.99

Table S1825.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ABCC6 MUTATED 5 2 3 1
ABCC6 WILD-TYPE 68 41 76 44
'ABCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.89

Table S1826.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ABCC6 MUTATED 0 1 2
ABCC6 WILD-TYPE 29 18 62
'ABCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 0.94

Table S1827.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ABCC6 MUTATED 0 2 1
ABCC6 WILD-TYPE 33 46 30
'CCDC104 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.57

Table S1828.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CCDC104 MUTATED 0 8 0 0 2
CCDC104 WILD-TYPE 56 144 11 5 16
'CCDC104 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.54

Table S1829.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC104 MUTATED 0 1 4
CCDC104 WILD-TYPE 43 38 49
'CCDC104 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 0.41

Table S1830.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC104 MUTATED 1 4 1 2 1 0
CCDC104 WILD-TYPE 38 32 36 8 39 24
'CCDC104 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.95

Table S1831.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC104 MUTATED 4 2 3 0
CCDC104 WILD-TYPE 61 62 37 17
'CCDC104 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S1832.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CCDC104 MUTATED 3 3 4
CCDC104 WILD-TYPE 76 82 79
'CCDC104 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.21

Table S1833.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CCDC104 MUTATED 0 0 1 2 5 1 1
CCDC104 WILD-TYPE 44 41 16 31 30 30 45

Figure S312.  Get High-res Image Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC104 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1834.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CCDC104 MUTATED 2 4 3
CCDC104 WILD-TYPE 67 75 89
'CCDC104 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.89

Table S1835.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CCDC104 MUTATED 4 0 3 2
CCDC104 WILD-TYPE 69 43 76 43
'CCDC104 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1836.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CCDC104 MUTATED 1 0 2
CCDC104 WILD-TYPE 28 19 62
'CCDC104 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.94

Table S1837.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CCDC104 MUTATED 0 2 1
CCDC104 WILD-TYPE 33 46 30
'MLL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.82

Table S1838.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MLL2 MUTATED 4 4 1 1
MLL2 WILD-TYPE 8 14 10 9
'MLL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0522 (Fisher's exact test), Q value = 0.34

Table S1839.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MLL2 MUTATED 4 0 2 3 1
MLL2 WILD-TYPE 8 10 5 4 14
'MLL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.15

Table S1840.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MLL2 MUTATED 1 28 2 0 2
MLL2 WILD-TYPE 55 124 9 5 16

Figure S313.  Get High-res Image Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.2

Table S1841.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MLL2 MUTATED 4 1 11
MLL2 WILD-TYPE 39 38 42

Figure S314.  Get High-res Image Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 0.41

Table S1842.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MLL2 MUTATED 3 7 7 4 3 2
MLL2 WILD-TYPE 36 29 30 6 37 22
'MLL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.39

Table S1843.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MLL2 MUTATED 7 6 11 2
MLL2 WILD-TYPE 58 58 29 15
'MLL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1844.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MLL2 MUTATED 10 13 10
MLL2 WILD-TYPE 69 72 73
'MLL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00532 (Fisher's exact test), Q value = 0.092

Table S1845.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MLL2 MUTATED 1 3 5 9 7 4 4
MLL2 WILD-TYPE 43 38 12 24 28 27 42

Figure S315.  Get High-res Image Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.9

Table S1846.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MLL2 MUTATED 9 13 10
MLL2 WILD-TYPE 60 66 82
'MLL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.58

Table S1847.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MLL2 MUTATED 15 3 9 5
MLL2 WILD-TYPE 58 40 70 40
'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1848.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MLL2 MUTATED 3 2 7
MLL2 WILD-TYPE 26 17 57
'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1849.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MLL2 MUTATED 4 5 3
MLL2 WILD-TYPE 29 43 28
'SSH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.97

Table S1850.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SSH2 MUTATED 2 1 1 0
SSH2 WILD-TYPE 10 17 10 10
'SSH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0914 (Fisher's exact test), Q value = 0.44

Table S1851.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SSH2 MUTATED 1 0 2 1 0
SSH2 WILD-TYPE 11 10 5 6 15
'SSH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.54

Table S1852.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SSH2 MUTATED 0 12 0 0 0
SSH2 WILD-TYPE 56 140 11 5 18
'SSH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S1853.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SSH2 MUTATED 2 1 1
SSH2 WILD-TYPE 41 38 52
'SSH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.63

Table S1854.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SSH2 MUTATED 4 2 1 2 2 0
SSH2 WILD-TYPE 35 34 36 8 38 24
'SSH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1855.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SSH2 MUTATED 4 4 3 0
SSH2 WILD-TYPE 61 60 37 17
'SSH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S1856.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SSH2 MUTATED 3 5 4
SSH2 WILD-TYPE 76 80 79
'SSH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.75

Table S1857.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SSH2 MUTATED 0 2 2 3 2 1 2
SSH2 WILD-TYPE 44 39 15 30 33 30 44
'SSH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1858.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SSH2 MUTATED 3 4 4
SSH2 WILD-TYPE 66 75 88
'SSH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S1859.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SSH2 MUTATED 5 2 3 1
SSH2 WILD-TYPE 68 41 76 44
'SSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1860.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
SSH2 MUTATED 1 1 2
SSH2 WILD-TYPE 28 18 62
'SSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1861.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
SSH2 MUTATED 2 1 1
SSH2 WILD-TYPE 31 47 30
'ZNF709 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.76

Table S1862.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF709 MUTATED 2 1 0 0
ZNF709 WILD-TYPE 10 17 11 10
'ZNF709 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.69

Table S1863.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF709 MUTATED 1 0 1 1 0
ZNF709 WILD-TYPE 11 10 6 6 15
'ZNF709 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.54

Table S1864.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF709 MUTATED 0 10 0 0 2
ZNF709 WILD-TYPE 56 142 11 5 16
'ZNF709 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.48

Table S1865.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF709 MUTATED 1 0 5
ZNF709 WILD-TYPE 42 39 48
'ZNF709 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.74

Table S1866.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF709 MUTATED 2 3 1 2 1 1
ZNF709 WILD-TYPE 37 33 36 8 39 23
'ZNF709 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.95

Table S1867.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF709 MUTATED 2 5 2 1
ZNF709 WILD-TYPE 63 59 38 16
'ZNF709 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.53

Table S1868.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF709 MUTATED 5 6 1
ZNF709 WILD-TYPE 74 79 82
'ZNF709 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0068

Table S1869.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF709 MUTATED 0 0 0 6 5 0 1
ZNF709 WILD-TYPE 44 41 17 27 30 31 45

Figure S316.  Get High-res Image Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF709 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.95

Table S1870.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF709 MUTATED 2 5 4
ZNF709 WILD-TYPE 67 74 88
'ZNF709 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.84

Table S1871.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF709 MUTATED 6 1 3 1
ZNF709 WILD-TYPE 67 42 76 44
'ZNF709 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.89

Table S1872.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF709 MUTATED 0 1 2
ZNF709 WILD-TYPE 29 18 62
'ZNF709 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.2

Table S1873.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF709 MUTATED 0 0 3
ZNF709 WILD-TYPE 33 48 28

Figure S317.  Get High-res Image Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BRDT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1874.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
BRDT MUTATED 1 1 1 0
BRDT WILD-TYPE 11 17 10 10
'BRDT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1875.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
BRDT MUTATED 1 0 1 0 1
BRDT WILD-TYPE 11 10 6 7 14
'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.35

Table S1876.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
BRDT MUTATED 0 11 0 0 3
BRDT WILD-TYPE 56 141 11 5 15
'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.95

Table S1877.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
BRDT MUTATED 2 1 4
BRDT WILD-TYPE 41 38 49
'BRDT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.17

Table S1878.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
BRDT MUTATED 4 4 1 3 0 1
BRDT WILD-TYPE 35 32 36 7 40 23

Figure S318.  Get High-res Image Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BRDT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S1879.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
BRDT MUTATED 4 5 3 1
BRDT WILD-TYPE 61 59 37 16
'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.89

Table S1880.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
BRDT MUTATED 6 5 3
BRDT WILD-TYPE 73 80 80
'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00777 (Fisher's exact test), Q value = 0.12

Table S1881.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
BRDT MUTATED 0 1 1 4 6 0 2
BRDT WILD-TYPE 44 40 16 29 29 31 44

Figure S319.  Get High-res Image Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S1882.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
BRDT MUTATED 3 5 5
BRDT WILD-TYPE 66 74 87
'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.76

Table S1883.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
BRDT MUTATED 7 2 3 1
BRDT WILD-TYPE 66 41 76 44
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.58

Table S1884.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
BRDT MUTATED 0 2 2
BRDT WILD-TYPE 29 17 62
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S1885.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
BRDT MUTATED 1 1 2
BRDT WILD-TYPE 32 47 29
'SH3BGRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.56

Table S1886.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SH3BGRL MUTATED 0 4 0 0 2
SH3BGRL WILD-TYPE 56 148 11 5 16
'SH3BGRL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.49

Table S1887.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SH3BGRL MUTATED 0 2 0 1 1 0
SH3BGRL WILD-TYPE 39 34 37 9 39 24
'SH3BGRL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S1888.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SH3BGRL MUTATED 1 1 2 0
SH3BGRL WILD-TYPE 64 63 38 17
'SH3BGRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.97

Table S1889.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SH3BGRL MUTATED 2 3 1
SH3BGRL WILD-TYPE 77 82 82
'SH3BGRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.22

Table S1890.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SH3BGRL MUTATED 0 1 0 0 4 1 0
SH3BGRL WILD-TYPE 44 40 17 33 31 30 46

Figure S320.  Get High-res Image Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SH3BGRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 0.4

Table S1891.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SH3BGRL MUTATED 2 4 0
SH3BGRL WILD-TYPE 67 75 92
'SH3BGRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.72

Table S1892.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SH3BGRL MUTATED 4 1 1 0
SH3BGRL WILD-TYPE 69 42 78 45
'MLH3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1893.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MLH3 MUTATED 1 2 1 0
MLH3 WILD-TYPE 11 16 10 10
'MLH3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.33

Table S1894.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MLH3 MUTATED 2 0 2 0 0
MLH3 WILD-TYPE 10 10 5 7 15

Figure S321.  Get High-res Image Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MLH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.37

Table S1895.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MLH3 MUTATED 0 16 0 0 1
MLH3 WILD-TYPE 56 136 11 5 17
'MLH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1896.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MLH3 MUTATED 3 2 4
MLH3 WILD-TYPE 40 37 49
'MLH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.63

Table S1897.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MLH3 MUTATED 6 4 1 1 1 2
MLH3 WILD-TYPE 33 32 36 9 39 22
'MLH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1898.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MLH3 MUTATED 6 5 3 1
MLH3 WILD-TYPE 59 59 37 16
'MLH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1899.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MLH3 MUTATED 6 5 6
MLH3 WILD-TYPE 73 80 77
'MLH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 0.34

Table S1900.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MLH3 MUTATED 0 1 2 4 5 1 4
MLH3 WILD-TYPE 44 40 15 29 30 30 42
'MLH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.97

Table S1901.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MLH3 MUTATED 3 6 7
MLH3 WILD-TYPE 66 73 85
'MLH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1902.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MLH3 MUTATED 7 2 5 2
MLH3 WILD-TYPE 66 41 74 43
'MLH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S1903.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MLH3 MUTATED 1 2 4
MLH3 WILD-TYPE 28 17 60
'MLH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1904.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MLH3 MUTATED 2 3 2
MLH3 WILD-TYPE 31 45 29
'CCDC150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.58

Table S1905.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CCDC150 MUTATED 0 11 0 0 0
CCDC150 WILD-TYPE 56 141 11 5 18
'CCDC150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.68

Table S1906.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC150 MUTATED 2 1 6
CCDC150 WILD-TYPE 41 38 47
'CCDC150 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.63

Table S1907.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC150 MUTATED 4 4 2 1 0 1
CCDC150 WILD-TYPE 35 32 35 9 40 23
'CCDC150 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.55

Table S1908.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC150 MUTATED 7 1 3 1
CCDC150 WILD-TYPE 58 63 37 16
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1909.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CCDC150 MUTATED 4 3 5
CCDC150 WILD-TYPE 75 82 78
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.072 (Fisher's exact test), Q value = 0.41

Table S1910.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CCDC150 MUTATED 0 0 1 4 3 2 2
CCDC150 WILD-TYPE 44 41 16 29 32 29 44
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S1911.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CCDC150 MUTATED 3 3 5
CCDC150 WILD-TYPE 66 76 87
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.79

Table S1912.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CCDC150 MUTATED 5 0 4 2
CCDC150 WILD-TYPE 68 43 75 43
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1913.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CCDC150 MUTATED 2 1 4
CCDC150 WILD-TYPE 27 18 60
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.89

Table S1914.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CCDC150 MUTATED 2 2 3
CCDC150 WILD-TYPE 31 46 28
'NT5C3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.97

Table S1915.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
NT5C3 MUTATED 2 1 1 0
NT5C3 WILD-TYPE 10 17 10 10
'NT5C3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0928 (Fisher's exact test), Q value = 0.44

Table S1916.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
NT5C3 MUTATED 1 0 2 1 0
NT5C3 WILD-TYPE 11 10 5 6 15
'NT5C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.85

Table S1917.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
NT5C3 MUTATED 0 7 0 0 0
NT5C3 WILD-TYPE 56 145 11 5 18
'NT5C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.73

Table S1918.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NT5C3 MUTATED 2 2 0 1 1 0
NT5C3 WILD-TYPE 37 34 37 9 39 24
'NT5C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S1919.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NT5C3 MUTATED 2 3 1 0
NT5C3 WILD-TYPE 63 61 39 17
'NT5C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.95

Table S1920.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
NT5C3 MUTATED 3 3 1
NT5C3 WILD-TYPE 76 82 82
'NT5C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.31

Table S1921.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
NT5C3 MUTATED 0 0 1 2 3 1 0
NT5C3 WILD-TYPE 44 41 16 31 32 30 46

Figure S322.  Get High-res Image Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NT5C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.39

Table S1922.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
NT5C3 MUTATED 2 4 0
NT5C3 WILD-TYPE 67 75 92
'NT5C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.52

Table S1923.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
NT5C3 MUTATED 4 1 0 1
NT5C3 WILD-TYPE 69 42 79 44
'APAF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.59

Table S1924.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
APAF1 MUTATED 3 2 0 0
APAF1 WILD-TYPE 9 16 11 10
'APAF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0931 (Fisher's exact test), Q value = 0.44

Table S1925.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
APAF1 MUTATED 2 0 1 2 0
APAF1 WILD-TYPE 10 10 6 5 15
'APAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.5

Table S1926.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
APAF1 MUTATED 0 10 1 0 2
APAF1 WILD-TYPE 56 142 10 5 16
'APAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.49

Table S1927.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
APAF1 MUTATED 0 0 3
APAF1 WILD-TYPE 43 39 50
'APAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.95

Table S1928.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
APAF1 MUTATED 1 4 2 1 2 1
APAF1 WILD-TYPE 38 32 35 9 38 23
'APAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S1929.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
APAF1 MUTATED 3 4 3 1
APAF1 WILD-TYPE 62 60 37 16
'APAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.32

Table S1930.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
APAF1 MUTATED 4 8 1
APAF1 WILD-TYPE 75 77 82

Figure S323.  Get High-res Image Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'APAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.014

Table S1931.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
APAF1 MUTATED 0 2 0 5 6 0 0
APAF1 WILD-TYPE 44 39 17 28 29 31 46

Figure S324.  Get High-res Image Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'APAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.59

Table S1932.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
APAF1 MUTATED 2 7 3
APAF1 WILD-TYPE 67 72 89
'APAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0596 (Fisher's exact test), Q value = 0.37

Table S1933.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
APAF1 MUTATED 7 3 2 0
APAF1 WILD-TYPE 66 40 77 45
'KANK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.37

Table S1934.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
KANK4 MUTATED 0 7 0 0 3
KANK4 WILD-TYPE 56 145 11 5 15
'KANK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.76

Table S1935.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
KANK4 MUTATED 2 1 5
KANK4 WILD-TYPE 41 38 48
'KANK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.31

Table S1936.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
KANK4 MUTATED 4 5 1 0 0 0
KANK4 WILD-TYPE 35 31 36 10 40 24

Figure S325.  Get High-res Image Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KANK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.58

Table S1937.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
KANK4 MUTATED 6 4 0 0
KANK4 WILD-TYPE 59 60 40 17
'KANK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.69

Table S1938.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
KANK4 MUTATED 6 3 2
KANK4 WILD-TYPE 73 82 81
'KANK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.52

Table S1939.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
KANK4 MUTATED 0 1 1 3 4 1 1
KANK4 WILD-TYPE 44 40 16 30 31 30 45
'KANK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S1940.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
KANK4 MUTATED 3 4 3
KANK4 WILD-TYPE 66 75 89
'KANK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.58

Table S1941.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
KANK4 MUTATED 6 0 3 1
KANK4 WILD-TYPE 67 43 76 44
'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1942.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
KANK4 MUTATED 2 1 4
KANK4 WILD-TYPE 27 18 60
'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.89

Table S1943.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
KANK4 MUTATED 2 2 3
KANK4 WILD-TYPE 31 46 28
'NRIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.76

Table S1944.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
NRIP1 MUTATED 2 1 0 0
NRIP1 WILD-TYPE 10 17 11 10
'NRIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 0.41

Table S1945.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
NRIP1 MUTATED 1 0 0 2 0
NRIP1 WILD-TYPE 11 10 7 5 15
'NRIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.81

Table S1946.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
NRIP1 MUTATED 1 10 0 0 2
NRIP1 WILD-TYPE 55 142 11 5 16
'NRIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.99

Table S1947.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NRIP1 MUTATED 3 1 3
NRIP1 WILD-TYPE 40 38 50
'NRIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.79

Table S1948.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NRIP1 MUTATED 3 4 2 1 1 0
NRIP1 WILD-TYPE 36 32 35 9 39 24
'NRIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1949.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NRIP1 MUTATED 4 4 3 0
NRIP1 WILD-TYPE 61 60 37 17
'NRIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.74

Table S1950.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
NRIP1 MUTATED 6 5 2
NRIP1 WILD-TYPE 73 80 81
'NRIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00042 (Fisher's exact test), Q value = 0.015

Table S1951.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
NRIP1 MUTATED 0 0 2 5 5 0 1
NRIP1 WILD-TYPE 44 41 15 28 30 31 45

Figure S326.  Get High-res Image Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NRIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.54

Table S1952.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
NRIP1 MUTATED 4 7 2
NRIP1 WILD-TYPE 65 72 90
'NRIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.52

Table S1953.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
NRIP1 MUTATED 7 0 3 3
NRIP1 WILD-TYPE 66 43 76 42
'NRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.76

Table S1954.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
NRIP1 MUTATED 1 2 2
NRIP1 WILD-TYPE 28 17 62
'NRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.92

Table S1955.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
NRIP1 MUTATED 2 1 2
NRIP1 WILD-TYPE 31 47 29
'GTF2H1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S1956.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
GTF2H1 MUTATED 1 2 0 0
GTF2H1 WILD-TYPE 11 16 11 10
'GTF2H1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.6

Table S1957.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
GTF2H1 MUTATED 2 0 1 0 0
GTF2H1 WILD-TYPE 10 10 6 7 15
'GTF2H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.79

Table S1958.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
GTF2H1 MUTATED 0 8 0 0 0
GTF2H1 WILD-TYPE 56 144 11 5 18
'GTF2H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1959.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
GTF2H1 MUTATED 1 0 2
GTF2H1 WILD-TYPE 42 39 51
'GTF2H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S1960.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
GTF2H1 MUTATED 2 1 2 0 1 2
GTF2H1 WILD-TYPE 37 35 35 10 39 22
'GTF2H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.65

Table S1961.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
GTF2H1 MUTATED 1 3 2 2
GTF2H1 WILD-TYPE 64 61 38 15
'GTF2H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.68

Table S1962.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
GTF2H1 MUTATED 2 5 1
GTF2H1 WILD-TYPE 77 80 82
'GTF2H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0083

Table S1963.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
GTF2H1 MUTATED 0 1 1 6 0 0 0
GTF2H1 WILD-TYPE 44 40 16 27 35 31 46

Figure S327.  Get High-res Image Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GTF2H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1964.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
GTF2H1 MUTATED 2 3 3
GTF2H1 WILD-TYPE 67 76 89
'GTF2H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.92

Table S1965.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
GTF2H1 MUTATED 3 2 1 2
GTF2H1 WILD-TYPE 70 41 78 43
'ASXL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.76

Table S1966.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ASXL2 MUTATED 2 1 0 0
ASXL2 WILD-TYPE 10 17 11 10
'ASXL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.69

Table S1967.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ASXL2 MUTATED 1 0 1 1 0
ASXL2 WILD-TYPE 11 10 6 6 15
'ASXL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.79

Table S1968.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ASXL2 MUTATED 1 11 0 0 2
ASXL2 WILD-TYPE 55 141 11 5 16
'ASXL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.76

Table S1969.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ASXL2 MUTATED 2 1 5
ASXL2 WILD-TYPE 41 38 48
'ASXL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1970.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ASXL2 MUTATED 3 4 1 0 2 1
ASXL2 WILD-TYPE 36 32 36 10 38 23
'ASXL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.86

Table S1971.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ASXL2 MUTATED 3 6 1 1
ASXL2 WILD-TYPE 62 58 39 16
'ASXL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.69

Table S1972.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ASXL2 MUTATED 6 6 2
ASXL2 WILD-TYPE 73 79 81
'ASXL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00891 (Fisher's exact test), Q value = 0.13

Table S1973.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ASXL2 MUTATED 1 1 1 6 4 1 0
ASXL2 WILD-TYPE 43 40 16 27 31 30 46

Figure S328.  Get High-res Image Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ASXL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1974.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ASXL2 MUTATED 4 5 4
ASXL2 WILD-TYPE 65 74 88
'ASXL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.76

Table S1975.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ASXL2 MUTATED 7 2 3 1
ASXL2 WILD-TYPE 66 41 76 44
'ASXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.87

Table S1976.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ASXL2 MUTATED 1 2 3
ASXL2 WILD-TYPE 28 17 61
'ASXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.25

Table S1977.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ASXL2 MUTATED 2 0 4
ASXL2 WILD-TYPE 31 48 27

Figure S329.  Get High-res Image Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF611 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1978.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF611 MUTATED 1 1 1 0
ZNF611 WILD-TYPE 11 17 10 10
'ZNF611 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0773 (Fisher's exact test), Q value = 0.41

Table S1979.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF611 MUTATED 1 0 2 0 0
ZNF611 WILD-TYPE 11 10 5 7 15
'ZNF611 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.86

Table S1980.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF611 MUTATED 1 11 0 0 0
ZNF611 WILD-TYPE 55 141 11 5 18
'ZNF611 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.53

Table S1981.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF611 MUTATED 3 0 5
ZNF611 WILD-TYPE 40 39 48
'ZNF611 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.6

Table S1982.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF611 MUTATED 5 2 2 1 0 1
ZNF611 WILD-TYPE 34 34 35 9 40 23
'ZNF611 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1983.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF611 MUTATED 4 4 2 1
ZNF611 WILD-TYPE 61 60 38 16
'ZNF611 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.82

Table S1984.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF611 MUTATED 5 5 2
ZNF611 WILD-TYPE 74 80 81
'ZNF611 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00337 (Fisher's exact test), Q value = 0.068

Table S1985.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF611 MUTATED 1 0 1 6 3 1 0
ZNF611 WILD-TYPE 43 41 16 27 32 30 46

Figure S330.  Get High-res Image Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF611 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.59

Table S1986.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF611 MUTATED 2 7 3
ZNF611 WILD-TYPE 67 72 89
'ZNF611 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.16

Table S1987.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF611 MUTATED 9 1 1 1
ZNF611 WILD-TYPE 64 42 78 44

Figure S331.  Get High-res Image Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF611 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.57

Table S1988.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
ZNF611 MUTATED 0 2 3
ZNF611 WILD-TYPE 29 17 61
'ZNF611 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.14

Table S1989.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
ZNF611 MUTATED 1 0 4
ZNF611 WILD-TYPE 32 48 27

Figure S332.  Get High-res Image Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SUN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.88

Table S1990.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SUN3 MUTATED 0 6 0 0 0
SUN3 WILD-TYPE 56 146 11 5 18
'SUN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.74

Table S1991.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SUN3 MUTATED 2 2 0 1 1 0
SUN3 WILD-TYPE 37 34 37 9 39 24
'SUN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S1992.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SUN3 MUTATED 2 3 1 0
SUN3 WILD-TYPE 63 61 39 17
'SUN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.52

Table S1993.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SUN3 MUTATED 2 4 0
SUN3 WILD-TYPE 77 81 83
'SUN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0723 (Fisher's exact test), Q value = 0.41

Table S1994.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SUN3 MUTATED 0 1 0 2 3 0 0
SUN3 WILD-TYPE 44 40 17 31 32 31 46
'SUN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.2

Table S1995.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SUN3 MUTATED 1 5 0
SUN3 WILD-TYPE 68 74 92

Figure S333.  Get High-res Image Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SUN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.52

Table S1996.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SUN3 MUTATED 4 1 0 1
SUN3 WILD-TYPE 69 42 79 44
'ZNF195 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.56

Table S1997.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
ZNF195 MUTATED 0 9 0 0 2
ZNF195 WILD-TYPE 56 143 11 5 16
'ZNF195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.59

Table S1998.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF195 MUTATED 1 0 4
ZNF195 WILD-TYPE 42 39 49
'ZNF195 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0988 (Fisher's exact test), Q value = 0.46

Table S1999.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF195 MUTATED 2 5 1 1 0 1
ZNF195 WILD-TYPE 37 31 36 9 40 23
'ZNF195 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2000.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF195 MUTATED 4 3 2 1
ZNF195 WILD-TYPE 61 61 38 16
'ZNF195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.6

Table S2001.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
ZNF195 MUTATED 5 5 1
ZNF195 WILD-TYPE 74 80 82
'ZNF195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0027

Table S2002.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
ZNF195 MUTATED 0 0 1 3 7 0 0
ZNF195 WILD-TYPE 44 41 16 30 28 31 46

Figure S334.  Get High-res Image Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.86

Table S2003.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
ZNF195 MUTATED 4 4 2
ZNF195 WILD-TYPE 65 75 90
'ZNF195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.72

Table S2004.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
ZNF195 MUTATED 6 1 2 1
ZNF195 WILD-TYPE 67 42 77 44
'EXOSC9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S2005.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
EXOSC9 MUTATED 1 2 0 0
EXOSC9 WILD-TYPE 11 16 11 10
'EXOSC9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.6

Table S2006.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
EXOSC9 MUTATED 2 0 1 0 0
EXOSC9 WILD-TYPE 10 10 6 7 15
'EXOSC9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.75

Table S2007.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
EXOSC9 MUTATED 0 9 0 0 1
EXOSC9 WILD-TYPE 56 143 11 5 17
'EXOSC9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.49

Table S2008.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EXOSC9 MUTATED 0 0 3
EXOSC9 WILD-TYPE 43 39 50
'EXOSC9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.89

Table S2009.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EXOSC9 MUTATED 2 3 2 0 0 1
EXOSC9 WILD-TYPE 37 33 35 10 40 23
'EXOSC9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.87

Table S2010.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EXOSC9 MUTATED 4 1 2 1
EXOSC9 WILD-TYPE 61 63 38 16
'EXOSC9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.88

Table S2011.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
EXOSC9 MUTATED 3 5 2
EXOSC9 WILD-TYPE 76 80 81
'EXOSC9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00152 (Fisher's exact test), Q value = 0.041

Table S2012.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
EXOSC9 MUTATED 0 0 0 4 5 0 1
EXOSC9 WILD-TYPE 44 41 17 29 30 31 45

Figure S335.  Get High-res Image Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EXOSC9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S2013.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
EXOSC9 MUTATED 2 4 3
EXOSC9 WILD-TYPE 67 75 89
'EXOSC9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 0.99

Table S2014.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
EXOSC9 MUTATED 2 1 3 3
EXOSC9 WILD-TYPE 71 42 76 42
'MFN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.76

Table S2015.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MFN2 MUTATED 0 8 0 0 1
MFN2 WILD-TYPE 56 144 11 5 17
'MFN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S2016.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MFN2 MUTATED 1 2 3
MFN2 WILD-TYPE 42 37 50
'MFN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.95

Table S2017.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MFN2 MUTATED 1 2 0 0 3 1
MFN2 WILD-TYPE 38 34 37 10 37 23
'MFN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.86

Table S2018.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MFN2 MUTATED 3 3 0 1
MFN2 WILD-TYPE 62 61 40 16
'MFN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S2019.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MFN2 MUTATED 3 4 2
MFN2 WILD-TYPE 76 81 81
'MFN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.57

Table S2020.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MFN2 MUTATED 0 1 0 3 3 0 2
MFN2 WILD-TYPE 44 40 17 30 32 31 44
'MFN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.33

Table S2021.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MFN2 MUTATED 0 6 3
MFN2 WILD-TYPE 69 73 89

Figure S336.  Get High-res Image Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MFN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.52

Table S2022.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MFN2 MUTATED 6 0 2 1
MFN2 WILD-TYPE 67 43 77 44
'MFN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.58

Table S2023.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MFN2 MUTATED 0 2 2
MFN2 WILD-TYPE 29 17 62
'MFN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.97

Table S2024.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MFN2 MUTATED 1 1 2
MFN2 WILD-TYPE 32 47 29
'LIMA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.98

Table S2025.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
LIMA1 MUTATED 1 6 0 0 1
LIMA1 WILD-TYPE 55 146 11 5 17
'LIMA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.76

Table S2026.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
LIMA1 MUTATED 1 0 3
LIMA1 WILD-TYPE 42 39 50
'LIMA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.95

Table S2027.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
LIMA1 MUTATED 1 2 1 1 1 2
LIMA1 WILD-TYPE 38 34 36 9 39 22
'LIMA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.85

Table S2028.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
LIMA1 MUTATED 1 4 2 1
LIMA1 WILD-TYPE 64 60 38 16
'LIMA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.24

Table S2029.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
LIMA1 MUTATED 2 6 0
LIMA1 WILD-TYPE 77 79 83

Figure S337.  Get High-res Image Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LIMA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00244 (Fisher's exact test), Q value = 0.055

Table S2030.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
LIMA1 MUTATED 0 0 1 4 3 0 0
LIMA1 WILD-TYPE 44 41 16 29 32 31 46

Figure S338.  Get High-res Image Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LIMA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.92

Table S2031.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
LIMA1 MUTATED 2 4 2
LIMA1 WILD-TYPE 67 75 90
'LIMA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0066

Table S2032.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
LIMA1 MUTATED 8 0 0 0
LIMA1 WILD-TYPE 65 43 79 45

Figure S339.  Get High-res Image Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPN12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 0.36

Table S2033.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PTPN12 MUTATED 3 0 1 0
PTPN12 WILD-TYPE 9 18 10 10
'PTPN12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.55

Table S2034.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PTPN12 MUTATED 0 0 2 1 1
PTPN12 WILD-TYPE 12 10 5 6 14
'PTPN12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.57

Table S2035.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
PTPN12 MUTATED 0 8 0 0 2
PTPN12 WILD-TYPE 56 144 11 5 16
'PTPN12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S2036.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PTPN12 MUTATED 1 0 2
PTPN12 WILD-TYPE 42 39 51
'PTPN12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00198 (Fisher's exact test), Q value = 0.05

Table S2037.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PTPN12 MUTATED 2 2 1 4 0 1
PTPN12 WILD-TYPE 37 34 36 6 40 23

Figure S340.  Get High-res Image Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTPN12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0972 (Fisher's exact test), Q value = 0.45

Table S2038.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PTPN12 MUTATED 1 3 5 1
PTPN12 WILD-TYPE 64 61 35 16
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.72

Table S2039.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
PTPN12 MUTATED 2 6 2
PTPN12 WILD-TYPE 77 79 81
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.17

Table S2040.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
PTPN12 MUTATED 0 0 1 2 5 0 2
PTPN12 WILD-TYPE 44 41 16 31 30 31 44

Figure S341.  Get High-res Image Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2041.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
PTPN12 MUTATED 3 3 4
PTPN12 WILD-TYPE 66 76 88
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.94

Table S2042.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
PTPN12 MUTATED 5 1 3 1
PTPN12 WILD-TYPE 68 42 76 44
'MTF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.76

Table S2043.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MTF2 MUTATED 0 8 0 0 1
MTF2 WILD-TYPE 56 144 11 5 17
'MTF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.48

Table S2044.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MTF2 MUTATED 1 0 5
MTF2 WILD-TYPE 42 39 48
'MTF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.69

Table S2045.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MTF2 MUTATED 1 3 1 1 0 1
MTF2 WILD-TYPE 38 33 36 9 40 23
'MTF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S2046.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MTF2 MUTATED 2 2 2 1
MTF2 WILD-TYPE 63 62 38 16
'MTF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.95

Table S2047.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MTF2 MUTATED 4 3 2
MTF2 WILD-TYPE 75 82 81
'MTF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00247 (Fisher's exact test), Q value = 0.055

Table S2048.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MTF2 MUTATED 0 0 0 4 4 1 0
MTF2 WILD-TYPE 44 41 17 29 31 30 46

Figure S342.  Get High-res Image Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MTF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.89

Table S2049.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MTF2 MUTATED 1 4 3
MTF2 WILD-TYPE 68 75 89
'MTF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.66

Table S2050.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MTF2 MUTATED 5 0 2 1
MTF2 WILD-TYPE 68 43 77 44
'MTF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.89

Table S2051.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MTF2 MUTATED 0 1 2
MTF2 WILD-TYPE 29 18 62
'MTF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0196 (Fisher's exact test), Q value = 0.2

Table S2052.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MTF2 MUTATED 0 0 3
MTF2 WILD-TYPE 33 48 28

Figure S343.  Get High-res Image Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.97

Table S2053.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MLL4 MUTATED 2 1 1 0
MLL4 WILD-TYPE 10 17 10 10
'MLL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0916 (Fisher's exact test), Q value = 0.44

Table S2054.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MLL4 MUTATED 1 0 2 1 0
MLL4 WILD-TYPE 11 10 5 6 15
'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00155 (Fisher's exact test), Q value = 0.041

Table S2055.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MLL4 MUTATED 0 27 0 0 2
MLL4 WILD-TYPE 56 125 11 5 16

Figure S344.  Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.3

Table S2056.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MLL4 MUTATED 4 2 12
MLL4 WILD-TYPE 39 37 41

Figure S345.  Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.75

Table S2057.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MLL4 MUTATED 8 4 2 1 4 1
MLL4 WILD-TYPE 31 32 35 9 36 23
'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S2058.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MLL4 MUTATED 8 8 3 1
MLL4 WILD-TYPE 57 56 37 16
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.82

Table S2059.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MLL4 MUTATED 7 13 10
MLL4 WILD-TYPE 72 72 73
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00072 (Fisher's exact test), Q value = 0.023

Table S2060.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MLL4 MUTATED 0 2 2 10 6 6 4
MLL4 WILD-TYPE 44 39 15 23 29 25 42

Figure S346.  Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.56

Table S2061.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MLL4 MUTATED 4 10 14
MLL4 WILD-TYPE 65 69 78
'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.16

Table S2062.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MLL4 MUTATED 14 2 11 1
MLL4 WILD-TYPE 59 41 68 44

Figure S347.  Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.76

Table S2063.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MLL4 MUTATED 2 4 8
MLL4 WILD-TYPE 27 15 56
'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.99

Table S2064.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MLL4 MUTATED 4 5 5
MLL4 WILD-TYPE 29 43 26
'C1ORF101 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.95

Table S2065.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C1ORF101 MUTATED 1 1 2 0
C1ORF101 WILD-TYPE 11 17 9 10
'C1ORF101 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.73

Table S2066.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C1ORF101 MUTATED 1 0 2 0 1
C1ORF101 WILD-TYPE 11 10 5 7 14
'C1ORF101 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.54

Table S2067.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
C1ORF101 MUTATED 0 10 0 0 2
C1ORF101 WILD-TYPE 56 142 11 5 16
'C1ORF101 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S2068.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C1ORF101 MUTATED 2 1 1
C1ORF101 WILD-TYPE 41 38 52
'C1ORF101 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.58

Table S2069.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C1ORF101 MUTATED 3 2 1 2 1 0
C1ORF101 WILD-TYPE 36 34 36 8 39 24
'C1ORF101 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S2070.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C1ORF101 MUTATED 3 4 2 0
C1ORF101 WILD-TYPE 62 60 38 17
'C1ORF101 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.85

Table S2071.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
C1ORF101 MUTATED 6 3 3
C1ORF101 WILD-TYPE 73 82 80
'C1ORF101 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 0.98

Table S2072.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
C1ORF101 MUTATED 1 1 1 3 3 1 2
C1ORF101 WILD-TYPE 43 40 16 30 32 30 44
'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.66

Table S2073.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
C1ORF101 MUTATED 3 6 2
C1ORF101 WILD-TYPE 66 73 90
'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S2074.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
C1ORF101 MUTATED 4 2 3 2
C1ORF101 WILD-TYPE 69 41 76 43
'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.31

Table S2075.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
C1ORF101 MUTATED 1 2 0
C1ORF101 WILD-TYPE 28 17 64

Figure S348.  Get High-res Image Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.58

Table S2076.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
C1ORF101 MUTATED 2 0 1
C1ORF101 WILD-TYPE 31 48 30
'MBOAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S2077.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
MBOAT2 MUTATED 1 5 0 0 1
MBOAT2 WILD-TYPE 55 147 11 5 17
'MBOAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S2078.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MBOAT2 MUTATED 1 1 3
MBOAT2 WILD-TYPE 42 38 50
'MBOAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.91

Table S2079.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MBOAT2 MUTATED 1 2 2 0 0 0
MBOAT2 WILD-TYPE 38 34 35 10 40 24
'MBOAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.69

Table S2080.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MBOAT2 MUTATED 3 0 2 0
MBOAT2 WILD-TYPE 62 64 38 17
'MBOAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.69

Table S2081.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
MBOAT2 MUTATED 4 1 2
MBOAT2 WILD-TYPE 75 84 81
'MBOAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.69

Table S2082.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
MBOAT2 MUTATED 0 1 1 1 3 0 1
MBOAT2 WILD-TYPE 44 40 16 32 32 31 45
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2083.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
MBOAT2 MUTATED 2 2 2
MBOAT2 WILD-TYPE 67 77 90
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.86

Table S2084.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
MBOAT2 MUTATED 1 0 3 2
MBOAT2 WILD-TYPE 72 43 76 43
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2085.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
MBOAT2 MUTATED 1 0 3
MBOAT2 WILD-TYPE 28 19 61
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.97

Table S2086.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
MBOAT2 MUTATED 1 1 2
MBOAT2 WILD-TYPE 32 47 29
'CHD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.45

Table S2087.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CHD4 MUTATED 1 6 0 2
CHD4 WILD-TYPE 11 12 11 8
'CHD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.74

Table S2088.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CHD4 MUTATED 2 4 0 1 2
CHD4 WILD-TYPE 10 6 7 6 13
'CHD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2089.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
CHD4 MUTATED 8 24 1 0 2
CHD4 WILD-TYPE 48 128 10 5 16
'CHD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S2090.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CHD4 MUTATED 7 4 8
CHD4 WILD-TYPE 36 35 45
'CHD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S2091.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CHD4 MUTATED 7 6 5 1 5 3
CHD4 WILD-TYPE 32 30 32 9 35 21
'CHD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.76

Table S2092.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CHD4 MUTATED 11 9 3 4
CHD4 WILD-TYPE 54 55 37 13
'CHD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.76

Table S2093.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
CHD4 MUTATED 15 10 10
CHD4 WILD-TYPE 64 75 73
'CHD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.73

Table S2094.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
CHD4 MUTATED 7 4 2 6 8 1 7
CHD4 WILD-TYPE 37 37 15 27 27 30 39
'CHD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.89

Table S2095.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
CHD4 MUTATED 9 12 9
CHD4 WILD-TYPE 60 67 83
'CHD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S2096.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
CHD4 MUTATED 9 4 10 7
CHD4 WILD-TYPE 64 39 69 38
'CHD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S2097.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
CHD4 MUTATED 3 2 10
CHD4 WILD-TYPE 26 17 54
'CHD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S2098.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
CHD4 MUTATED 5 5 5
CHD4 WILD-TYPE 28 43 26
'SESN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.88

Table S2099.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SESN3 MUTATED 2 2 0 0
SESN3 WILD-TYPE 10 16 11 10
'SESN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.67

Table S2100.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SESN3 MUTATED 2 0 1 1 0
SESN3 WILD-TYPE 10 10 6 6 15
'SESN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.57

Table S2101.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 56 152 11 5 18
SESN3 MUTATED 0 12 0 0 1
SESN3 WILD-TYPE 56 140 11 5 17
'SESN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.69

Table S2102.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SESN3 MUTATED 1 1 5
SESN3 WILD-TYPE 42 38 48
'SESN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.9

Table S2103.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SESN3 MUTATED 3 2 3 1 1 0
SESN3 WILD-TYPE 36 34 34 9 39 24
'SESN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.89

Table S2104.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SESN3 MUTATED 3 3 4 0
SESN3 WILD-TYPE 62 61 36 17
'SESN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.97

Table S2105.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 83
SESN3 MUTATED 3 6 4
SESN3 WILD-TYPE 76 79 79
'SESN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00411 (Fisher's exact test), Q value = 0.076

Table S2106.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 44 41 17 33 35 31 46
SESN3 MUTATED 0 0 0 5 5 1 2
SESN3 WILD-TYPE 44 41 17 28 30 30 44

Figure S349.  Get High-res Image Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SESN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.7

Table S2107.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 69 79 92
SESN3 MUTATED 1 5 6
SESN3 WILD-TYPE 68 74 86
'SESN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.93

Table S2108.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 43 79 45
SESN3 MUTATED 5 1 5 1
SESN3 WILD-TYPE 68 42 74 44
'SESN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.76

Table S2109.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 29 19 64
SESN3 MUTATED 0 1 5
SESN3 WILD-TYPE 29 18 59
'SESN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.85

Table S2110.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 33 48 31
SESN3 MUTATED 1 2 3
SESN3 WILD-TYPE 32 46 28
Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCEC-TP/15165175/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCEC-TP/15120652/UCEC-TP.transferedmergedcluster.txt

  • Number of patients = 248

  • Number of significantly mutated genes = 197

  • Number of Molecular subtypes = 12

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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