		Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	8 (10%)	72	0.71678	0.928	0.71595	0.928	0.70414	0.921	0.79953	0.931	0.21158	0.506	0.058659	0.247	1	1	0.03829	0.191
2p gain	10 (12%)	70	0.31889	0.597	1	1	0.03808	0.191	0.11538	0.377	0.10832	0.365	0.85072	0.959	0.55167	0.813	0.03272	0.18
2q gain	8 (10%)	72	0.39472	0.665	0.71559	0.928	0.055579	0.244	0.1101	0.365	0.27713	0.541	0.1942	0.474	0.346	0.616	0.0075599	0.0605
4p gain	7 (9%)	73	0.02668	0.158	0.27901	0.541	0.15252	0.43	0.12018	0.38	0.88474	0.986	0.36703	0.637	0.87279	0.976	0.2296	0.507
4q gain	4 (5%)	76	0.15499	0.432	0.26868	0.541	0.39899	0.67	0.34365	0.616	0.42383	0.694	0.82389	0.947	1	1	0.22692	0.507
5p gain	3 (4%)	77	0.16081	0.433	0.44287	0.698	0.78085	0.931	0.10839	0.365	0.79334	0.931	0.27636	0.541	1	1	0.21474	0.506
5q gain	3 (4%)	77	0.16166	0.433	0.43714	0.698	0.78387	0.931	0.10802	0.365	0.79533	0.931	0.27377	0.541	1	1	0.21388	0.506
6p gain	39 (49%)	41	0.00025	0.00319	0.00433	0.0376	0.00019	0.00258	0.00023	0.00303	2e-05	0.000355	3e-05	0.00051	0.01038	0.077	2e-05	0.000355
6q gain	16 (20%)	64	0.0057999	0.0473	0.00238	0.0237	0.00035	0.00408	0.00112	0.0124	0.00026	0.00321	0.00034	0.00408	0.00352	0.0326	9.9999e-05	0.00146
7p gain	9 (11%)	71	0.16355	0.433	0.12612	0.392	1	1	0.73953	0.931	0.66065	0.89	0.18031	0.449	0.64269	0.871	0.7809	0.931
7q gain	8 (10%)	72	0.056319	0.244	0.03089	0.175	0.88947	0.988	0.44542	0.699	0.31492	0.595	0.3276	0.602	0.26113	0.541	0.67283	0.9
8p gain	33 (41%)	47	0.00135	0.0145	0.00099999	0.0113	0.00259	0.0252	0.00412	0.0367	0.01963	0.123	0.01521	0.105	0.03778	0.191	0.01372	0.0965
8q gain	53 (66%)	27	9.9999e-06	0.000204	9.9999e-06	0.000204	5.9999e-05	0.000979	9.9999e-06	0.000204	8.9999e-05	0.00136	9.9999e-06	0.000204	2e-05	0.000355	0.00011	0.00155
9p gain	6 (8%)	74	0.23564	0.508	0.17839	0.449	0.40518	0.674	0.64203	0.871	0.74347	0.931	1	1	0.12583	0.392	0.91785	1
9q gain	5 (6%)	75	0.51394	0.771	0.03717	0.191	0.83871	0.952	0.84003	0.952	0.35019	0.621	0.74878	0.931	0.01847	0.122	0.75792	0.931
11p gain	9 (11%)	71	0.16454	0.433	0.54241	0.802	1	1	0.73932	0.931	0.2523	0.536	0.23378	0.507	1	1	0.70222	0.921
11q gain	10 (12%)	70	0.31715	0.596	0.82906	0.947	0.90851	0.999	0.82865	0.947	0.13395	0.403	0.11784	0.378	1	1	0.70143	0.921
12p gain	3 (4%)	77	0.15949	0.433	0.44132	0.698	0.088049	0.344	0.0099899	0.0755	0.79475	0.931	0.27448	0.541	1	1	0.27909	0.541
12q gain	3 (4%)	77	0.1606	0.433	0.44129	0.698	0.088159	0.344	0.0097899	0.0754	0.79632	0.931	0.2751	0.541	1	1	0.27936	0.541
13q gain	6 (8%)	74	0.10572	0.365	1	1	0.73494	0.931	0.75127	0.931	0.48838	0.736	0.51869	0.774	0.4062	0.674	0.11784	0.378
14q gain	3 (4%)	77	0.0377	0.191	0.44113	0.698	0.58847	0.832	0.3266	0.602	0.7956	0.931	0.59716	0.832	1	1	0.76476	0.931
16p gain	4 (5%)	76	1	1	0.43578	0.698	1	1	0.43815	0.698	0.33754	0.615	0.474	0.73	0.82988	0.947	1	1
17p gain	8 (10%)	72	0.080639	0.323	0.80135	0.931	0.39389	0.665	0.2199	0.506	0.35493	0.622	0.058649	0.247	0.48412	0.736	0.70334	0.921
17q gain	9 (11%)	71	0.21685	0.506	1	1	0.42208	0.694	0.30762	0.584	0.2542	0.537	0.02857	0.167	0.26689	0.541	0.63238	0.866
20p gain	8 (10%)	72	0.0092299	0.0724	0.566	0.831	0.38909	0.661	0.2188	0.506	0.27929	0.541	0.2366	0.508	0.79334	0.931	0.84324	0.953
20q gain	9 (11%)	71	0.00175	0.0178	0.5407	0.802	0.14565	0.425	0.056859	0.244	0.18014	0.449	0.1568	0.432	0.90273	0.995	0.77889	0.931
21q gain	14 (18%)	66	0.00322	0.0306	0.19742	0.479	0.10449	0.365	0.01354	0.0965	0.86913	0.976	0.29768	0.568	0.12797	0.393	0.46771	0.723
22q gain	6 (8%)	74	0.10765	0.365	0.64277	0.871	0.1506	0.43	0.22171	0.506	0.48785	0.736	0.17478	0.443	1	1	0.11847	0.378
xp gain	10 (12%)	70	0.38895	0.661	0.092959	0.35	0.11145	0.367	0.14091	0.42	0.33675	0.615	0.37513	0.649	0.37672	0.649	0.26993	0.541
xq gain	9 (11%)	71	0.66022	0.89	0.2813	0.541	0.02419	0.146	0.01955	0.123	0.10831	0.365	0.10408	0.365	0.43402	0.698	0.088549	0.344
1p loss	19 (24%)	61	0.00479	0.0407	0.050769	0.225	0.78533	0.931	0.66494	0.892	0.36603	0.637	0.27718	0.541	0.26779	0.541	0.076379	0.312
1q loss	3 (4%)	77	0.03756	0.191	0.16727	0.435	0.21773	0.506	0.32434	0.601	0.4295	0.698	0.04601	0.215	0.091239	0.348	0.03217	0.18
3p loss	43 (54%)	37	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204
3q loss	43 (54%)	37	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204	9.9999e-06	0.000204
4q loss	3 (4%)	77	1	1	0.7901	0.931	0.5905	0.832	0.60418	0.832	0.79538	0.931	0.27639	0.541	0.40621	0.674	0.48872	0.736
5q loss	3 (4%)	77	0.44919	0.701	0.10729	0.365	0.089279	0.344	0.16913	0.437	0.59879	0.832	0.87085	0.976	0.2978	0.568	0.89324	0.988
6q loss	17 (21%)	63	7.9999e-05	0.00126	0.00414	0.0367	0.04955	0.222	0.0050299	0.0419	0.098809	0.363	0.23009	0.507	0.03883	0.191	0.00152	0.0159
8p loss	9 (11%)	71	0.02962	0.17	0.34472	0.616	0.03575	0.191	0.0244	0.146	0.22655	0.507	0.28004	0.541	0.16544	0.433	0.0178	0.121
8q loss	3 (4%)	77	0.78898	0.931	0.60325	0.832	1	1	0.79248	0.931	1	1	0.7726	0.931	0.78441	0.931	0.89292	0.988
9p loss	8 (10%)	72	0.10927	0.365	0.04143	0.199	0.34518	0.616	0.15296	0.43	0.18704	0.46	0.35342	0.622	0.17114	0.438	0.79144	0.931
9q loss	7 (9%)	73	0.1654	0.433	0.075369	0.311	0.59642	0.832	0.24048	0.514	0.094339	0.35	0.58098	0.832	0.080529	0.323	0.42177	0.694
11p loss	3 (4%)	77	0.03706	0.191	0.23367	0.507	0.04293	0.204	0.10928	0.365	0.23157	0.507	0.15187	0.43	0.2165	0.506	0.1856	0.459
12p loss	3 (4%)	77	0.7879	0.931	0.60562	0.832	1	1	0.79163	0.931	1	1	0.51976	0.774	0.59319	0.832	1	1
13q loss	3 (4%)	77	1	1	0.17177	0.438	0.59155	0.832	0.60427	0.832	1	1	1	1	0.78485	0.931	0.4877	0.736
15q loss	4 (5%)	76	0.15586	0.432	0.0482	0.219	0.83098	0.947	0.82453	0.947	1	1	0.91083	0.999	1	1	0.69974	0.921
16p loss	3 (4%)	77	1	1	0.44289	0.698	0.58675	0.832	0.60123	0.832	1	1	1	1	0.7843	0.931	0.35533	0.622
16q loss	16 (20%)	64	0.02128	0.132	0.13114	0.399	0.094339	0.35	0.01275	0.0929	0.82401	0.947	0.12687	0.392	0.14549	0.425	0.04689	0.215
19p loss	3 (4%)	77	0.45214	0.701	0.60283	0.832	0.78363	0.931	1	1	0.59816	0.832	0.22751	0.507	0.78519	0.931	0.69148	0.921
19q loss	3 (4%)	77	0.45217	0.701	0.60424	0.832	0.78126	0.931	1	1	0.59777	0.832	0.22766	0.507	0.78878	0.931	0.69293	0.921
xp loss	12 (15%)	68	0.34209	0.616	0.03928	0.191	0.3232	0.601	0.26667	0.541	0.48045	0.736	0.58082	0.832	0.069079	0.288	0.13445	0.403
xq loss	13 (16%)	67	0.15275	0.43	0.01913	0.123	0.21216	0.506	0.14588	0.425	0.22182	0.506	0.38567	0.661	0.01803	0.121	0.04639	0.215
