Correlation between gene mutation status and molecular subtypes
Adrenocortical Carcinoma (Primary solid tumor)
02 April 2015 | analyses__2015_04_02
Maintainer Information
Citation Information
doi:10.7908/C1251H57
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2015): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1251H57
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 119 genes and 10 molecular subtypes across 62 patients, no significant finding detected with P value < 0.05 and Q value < 0.25.

- No gene mutations related to molecuar subtypes.

Results
Overview of the results

Table 1. Get Full Table Overview of the association between mutation status of 119 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, no significant finding detected.

|  | Clinical Features | CN CNMF | METHLYATION CNMF | RPPA CNMF | RPPA CHIERARCHICAL | MRNASEQ CNMF | MRNASEQ CHIERARCHICAL | MIRSEQ CNMF | MIRSEQ CHIERARCHICAL | MIRSEQ MATURE CNMF | MIRSEQ MATURE CHIERARCHICAL
| nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test
ZFPM1 | 24 (39%) | 38 | 0.804 (1.00) | 0.816 (1.00) | 0.718 (1.00) | 0.873 (1.00) | 0.376 (1.00) | 0.747 (1.00) | 0.823 (1.00) | 0.921 (1.00) | 0.381 (1.00) | 0.741 (1.00)
LACTB | 19 (31%) | 43 | 0.439 (1.00) | 0.687 (1.00) | 0.686 (1.00) | 0.564 (1.00) | 1 (1.00) | 0.317 (1.00) | 0.377 (1.00) | 0.75 (1.00) | 0.322 (1.00) | 0.178 (1.00)
CCDC102A | 17 (27%) | 45 | 0.0186 (1.00) | 0.934 (1.00) | 0.67 (1.00) | 0.506 (1.00) | 0.974 (1.00) | 0.825 (1.00) | 0.498 (1.00) | 0.469 (1.00) | 0.808 (1.00) | 0.507 (1.00)
ZNF517 | 13 (21%) | 49 | 0.164 (1.00) | 0.981 (1.00) | 1 (1.00) |  | 0.822 (1.00) | 0.951 (1.00) | 0.173 (1.00) | 0.694 (1.00) | 0.727 (1.00) | 0.775 (1.00)
MAL2 | 11 (18%) | 51 | 0.495 (1.00) | 0.313 (1.00) | 1 (1.00) | 1 (1.00) | 0.251 (1.00) | 0.51 (1.00) | 0.219 (1.00) | 0.267 (1.00) | 1 (1.00) | 0.869 (1.00)
CLDN23 | 10 (16%) | 52 | 0.571 (1.00) | 0.25 (1.00) | 1 (1.00) | 0.351 (1.00) | 0.029 (1.00) | 0.211 (1.00) | 0.0977 (1.00) | 0.182 (1.00) | 0.414 (1.00) | 0.545 (1.00)
TOR3A | 12 (19%) | 50 | 0.612 (1.00) | 0.0137 (1.00) | 0.153 (1.00) | 0.316 (1.00) | 0.674 (1.00) | 0.00482 (1.00) | 1 (1.00) | 0.842 (1.00) | 0.911 (1.00) | 0.806 (1.00)
USP42 | 15 (24%) | 47 | 0.549 (1.00) | 0.0451 (1.00) | 0.396 (1.00) | 0.466 (1.00) | 1 (1.00) | 0.96 (1.00) | 0.458 (1.00) | 0.874 (1.00) | 0.913 (1.00) | 0.902 (1.00)
TP53 | 12 (19%) | 50 | 0.135 (1.00) | 0.789 (1.00) | 0.396 (1.00) | 0.467 (1.00) | 0.0203 (1.00) | 0.665 (1.00) | 0.0162 (1.00) | 0.672 (1.00) | 0.0066 (1.00) | 0.18 (1.00)
APOE | 7 (11%) | 55 | 1 (1.00) | 0.598 (1.00) | 1 (1.00) | 0.381 (1.00) | 0.0583 (1.00) | 0.398 (1.00) | 0.194 (1.00) | 0.791 (1.00) | 0.417 (1.00) | 1 (1.00)
ZAR1 | 11 (18%) | 51 | 0.647 (1.00) | 0.667 (1.00) | 1 (1.00) | 0.793 (1.00) | 0.622 (1.00) | 0.868 (1.00) | 0.714 (1.00) | 0.971 (1.00) | 1 (1.00) | 0.603 (1.00)
ASPDH | 8 (13%) | 54 | 0.3 (1.00) | 0.691 (1.00) | 1 (1.00) | 0.315 (1.00) | 0.0225 (1.00) | 0.393 (1.00) | 0.473 (1.00) | 0.0305 (1.00) | 0.212 (1.00) | 0.0818 (1.00)
KCNK17 | 9 (15%) | 53 | 0.204 (1.00) | 0.0403 (1.00) | 0.0178 (1.00) | 0.441 (1.00) | 0.105 (1.00) | 0.0088 (1.00) | 0.891 (1.00) | 0.546 (1.00) | 0.718 (1.00) | 0.446 (1.00)
LZTR1 | 6 (10%) | 56 | 0.0511 (1.00) | 0.85 (1.00) | 1 (1.00) |  | 0.0884 (1.00) | 0.118 (1.00) | 0.399 (1.00) | 0.0148 (1.00) | 1 (1.00) | 0.455 (1.00)
ERCC2 | 10 (16%) | 52 | 1 (1.00) | 0.229 (1.00) | 0.0377 (1.00) | 0.234 (1.00) | 0.479 (1.00) | 0.169 (1.00) | 0.597 (1.00) | 0.27 (1.00) | 0.336 (1.00) | 0.208 (1.00)
RINL | 8 (13%) | 54 | 0.34 (1.00) | 0.677 (1.00) | 1 (1.00) | 0.58 (1.00) | 0.468 (1.00) | 0.276 (1.00) | 0.759 (1.00) | 0.172 (1.00) | 0.35 (1.00) | 0.748 (1.00)
SYT8 | 8 (13%) | 54 | 0.442 (1.00) | 0.44 (1.00) | 1 (1.00) | 1 (1.00) | 0.0412 (1.00) | 0.177 (1.00) | 1 (1.00) | 0.185 (1.00) | 0.75 (1.00) | 0.495 (1.00)
LRIG1 | 16 (26%) | 46 | 0.539 (1.00) | 0.959 (1.00) | 1 (1.00) | 1 (1.00) | 0.865 (1.00) | 0.612 (1.00) | 0.36 (1.00) | 0.434 (1.00) | 0.576 (1.00) | 0.903 (1.00)
C1ORF106 | 9 (15%) | 53 | 0.841 (1.00) | 0.471 (1.00) | 0.639 (1.00) | 0.0475 (1.00) | 0.343 (1.00) | 0.76 (1.00) | 0.474 (1.00) | 0.694 (1.00) | 0.0536 (1.00) | 1 (1.00)
GPRIN2 | 8 (13%) | 54 | 0.868 (1.00) | 0.384 (1.00) | 1 (1.00) | 0.693 (1.00) | 0.682 (1.00) | 0.4 (1.00) | 0.58 (1.00) | 0.753 (1.00) | 0.599 (1.00) | 0.181 (1.00)
CTNNB1 | 7 (11%) | 55 | 0.733 (1.00) | 0.184 (1.00) | 1 (1.00) | 0.394 (1.00) | 0.0182 (1.00) | 0.0232 (1.00) | 0.00076 (0.452) | 0.178 (1.00) | 0.122 (1.00) | 0.712 (1.00)
C16ORF3 | 5 (8%) | 57 | 0.858 (1.00) | 0.00067 (0.452) | 1 (1.00) | 0.79 (1.00) | 0.803 (1.00) | 0.813 (1.00) | 0.581 (1.00) | 1 (1.00) | 0.726 (1.00) | 0.836 (1.00)
CCDC105 | 6 (10%) | 56 | 1 (1.00) | 0.0109 (1.00) | 0.226 (1.00) | 0.674 (1.00) | 0.938 (1.00) | 0.794 (1.00) | 1 (1.00) | 0.0541 (1.00) | 0.218 (1.00) | 0.207 (1.00)
RGS9BP | 8 (13%) | 54 | 0.726 (1.00) | 0.634 (1.00) | 1 (1.00) | 0.13 (1.00) | 1 (1.00) | 0.933 (1.00) | 0.218 (1.00) | 0.962 (1.00) | 0.343 (1.00) | 0.749 (1.00)
HHIPL1 | 6 (10%) | 56 | 0.274 (1.00) | 0.433 (1.00) | 0.484 (1.00) |  | 0.626 (1.00) | 0.517 (1.00) | 0.204 (1.00) | 0.425 (1.00) | 0.203 (1.00) | 0.333 (1.00)
C10ORF95 | 6 (10%) | 56 | 0.199 (1.00) | 0.379 (1.00) | 1 (1.00) |  | 0.515 (1.00) | 1 (1.00) | 0.486 (1.00) | 0.361 (1.00) | 1 (1.00) | 1 (1.00)
TSC22D2 | 8 (13%) | 54 | 0.947 (1.00) | 0.543 (1.00) | 1 (1.00) | 0.954 (1.00) | 0.782 (1.00) | 0.817 (1.00) | 0.76 (1.00) | 0.432 (1.00) | 0.348 (1.00) | 1 (1.00)
NOXA1 | 5 (8%) | 57 | 0.141 (1.00) | 0.515 (1.00) | 1 (1.00) |  | 0.222 (1.00) | 0.441 (1.00) | 0.295 (1.00) | 0.35 (1.00) | 0.254 (1.00) | 0.72 (1.00)
THEM4 | 5 (8%) | 57 | 0.28 (1.00) | 0.769 (1.00) | 1 (1.00) |  | 0.438 (1.00) | 0.876 (1.00) | 0.178 (1.00) | 0.106 (1.00) | 0.229 (1.00) | 0.259 (1.00)
ATXN1 | 10 (16%) | 52 | 0.552 (1.00) | 0.139 (1.00) | 0.6 (1.00) | 0.915 (1.00) | 0.24 (1.00) | 0.658 (1.00) | 0.287 (1.00) | 0.872 (1.00) | 0.235 (1.00) | 0.316 (1.00)
PLIN5 | 5 (8%) | 57 | 0.501 (1.00) | 0.696 (1.00) | 1 (1.00) | 0.381 (1.00) | 0.8 (1.00) | 0.665 (1.00) | 0.269 (1.00) | 0.269 (1.00) | 0.511 (1.00) | 0.048 (1.00)
OPRD1 | 12 (19%) | 50 | 0.967 (1.00) | 0.436 (1.00) | 0.655 (1.00) | 0.485 (1.00) | 0.8 (1.00) | 0.96 (1.00) | 0.296 (1.00) | 0.614 (1.00) | 1 (1.00) | 0.512 (1.00)
KRTAP4-5 | 5 (8%) | 57 | 0.632 (1.00) | 0.289 (1.00) | 0.484 (1.00) |  | 0.91 (1.00) | 0.877 (1.00) | 1 (1.00) | 0.842 (1.00) | 0.436 (1.00) | 1 (1.00)
C19ORF10 | 7 (11%) | 55 | 0.781 (1.00) | 0.424 (1.00) | 0.6 (1.00) | 0.393 (1.00) | 0.24 (1.00) | 0.123 (1.00) | 0.551 (1.00) | 0.861 (1.00) | 0.638 (1.00) | 0.712 (1.00)
AATK | 6 (10%) | 56 | 0.14 (1.00) | 0.329 (1.00) | 1 (1.00) |  | 0.437 (1.00) | 0.353 (1.00) | 1 (1.00) | 0.545 (1.00) | 1 (1.00) | 0.618 (1.00)
SARM1 | 6 (10%) | 56 | 0.209 (1.00) | 0.423 (1.00) | 0.6 (1.00) | 0.694 (1.00) | 0.176 (1.00) | 0.114 (1.00) | 0.269 (1.00) | 0.837 (1.00) | 0.51 (1.00) | 0.08 (1.00)
TRIOBP | 10 (16%) | 52 | 0.621 (1.00) | 0.23 (1.00) | 0.583 (1.00) | 0.129 (1.00) | 1 (1.00) | 0.11 (1.00) | 0.711 (1.00) | 0.871 (1.00) | 1 (1.00) | 0.774 (1.00)
ZNF598 | 12 (19%) | 50 | 0.11 (1.00) | 0.314 (1.00) | 1 (1.00) | 0.747 (1.00) | 0.49 (1.00) | 0.951 (1.00) | 1 (1.00) | 0.226 (1.00) | 0.902 (1.00) | 1 (1.00)
WDR34 | 5 (8%) | 57 | 0.63 (1.00) | 0.829 (1.00) | 0.484 (1.00) |  | 0.865 (1.00) | 0.814 (1.00) | 0.843 (1.00) | 0.548 (1.00) | 0.842 (1.00) | 0.333 (1.00)
ZNF628 | 7 (11%) | 55 | 0.21 (1.00) | 0.927 (1.00) | 1 (1.00) | 0.676 (1.00) | 0.312 (1.00) | 0.116 (1.00) | 0.093 (1.00) | 0.5 (1.00) | 0.283 (1.00) | 0.545 (1.00)
BTBD11 | 6 (10%) | 56 | 1 (1.00) | 0.312 (1.00) | 1 (1.00) |  | 0.481 (1.00) | 1 (1.00) | 0.49 (1.00) | 0.184 (1.00) | 0.724 (1.00) | 0.336 (1.00)
IRX3 | 5 (8%) | 57 | 0.142 (1.00) | 0.711 (1.00) | 0.484 (1.00) |  | 0.521 (1.00) | 0.118 (1.00) | 0.177 (1.00) | 0.778 (1.00) | 0.23 (1.00) | 0.455 (1.00)
FPGS | 5 (8%) | 57 | 1 (1.00) | 1 (1.00) | 1 (1.00) | 0.351 (1.00) | 0.665 (1.00) | 0.6 (1.00) | 0.0568 (1.00) | 0.622 (1.00) | 0.825 (1.00) | 0.615 (1.00)
MEN1 | 5 (8%) | 57 | 0.42 (1.00) | 0.0472 (1.00) | 0.484 (1.00) |  | 0.0128 (1.00) | 0.00638 (1.00) | 0.203 (1.00) | 0.0426 (1.00) | 0.134 (1.00) | 0.204 (1.00)
BHLHE22 | 5 (8%) | 57 | 0.423 (1.00) | 0.0735 (1.00) | 1 (1.00) | 0.915 (1.00) | 0.119 (1.00) | 0.815 (1.00) | 0.582 (1.00) | 0.836 (1.00) | 0.727 (1.00) | 0.835 (1.00)
DMKN | 3 (5%) | 59 | 1 (1.00) | 0.326 (1.00) | 0.464 (1.00) |  | 0.619 (1.00) | 0.443 (1.00) | 0.00644 (1.00) | 0.567 (1.00) | 0.255 (1.00) | 1 (1.00)
OBSCN | 18 (29%) | 44 | 0.31 (1.00) | 0.521 (1.00) | 1 (1.00) | 0.544 (1.00) | 0.671 (1.00) | 0.804 (1.00) | 0.151 (1.00) | 0.497 (1.00) | 1 (1.00) | 0.386 (1.00)
PANK2 | 5 (8%) | 57 | 0.629 (1.00) | 0.432 (1.00) | 0.226 (1.00) | 0.352 (1.00) | 0.116 (1.00) | 0.0513 (1.00) | 0.43 (1.00) | 0.348 (1.00) | 1 (1.00) | 0.256 (1.00)
RREB1 | 5 (8%) | 57 | 0.726 (1.00) | 0.852 (1.00) | 0.206 (1.00) |  | 0.62 (1.00) | 1 (1.00) | 0.529 (1.00) | 0.546 (1.00) | 0.171 (1.00) | 0.353 (1.00)
RNF149 | 4 (6%) | 58 | 0.34 (1.00) | 0.0364 (1.00) | 0.583 (1.00) | 0.955 (1.00) | 0.438 (1.00) | 0.602 (1.00) | 0.314 (1.00) | 0.261 (1.00) | 0.665 (1.00) | 0.173 (1.00)
GLTPD2 | 6 (10%) | 56 | 0.876 (1.00) | 0.841 (1.00) | 0.484 (1.00) |  | 0.829 (1.00) | 0.399 (1.00) | 0.552 (1.00) | 0.527 (1.00) | 0.873 (1.00) | 0.133 (1.00)
SNED1 | 5 (8%) | 57 | 0.633 (1.00) | 0.315 (1.00) | 0.464 (1.00) |  | 0.398 (1.00) | 0.668 (1.00) | 0.0941 (1.00) | 0.663 (1.00) | 1 (1.00) | 0.544 (1.00)
TPO | 12 (19%) | 50 | 0.261 (1.00) | 0.299 (1.00) | 0.102 (1.00) | 0.697 (1.00) | 0.172 (1.00) | 0.125 (1.00) | 0.0981 (1.00) | 0.344 (1.00) | 1 (1.00) | 0.173 (1.00)
PTPLA | 4 (6%) | 58 | 0.418 (1.00) | 0.327 (1.00) | 1 (1.00) |  | 0.339 (1.00) | 0.441 (1.00) | 0.776 (1.00) | 1 (1.00) | 0.775 (1.00) | 1 (1.00)
PRSS27 | 3 (5%) | 59 | 1 (1.00) | 0.908 (1.00) | 1 (1.00) |  | 0.618 (1.00) | 0.0502 (1.00) | 0.131 (1.00) | 1 (1.00) | 0.612 (1.00) | 0.554 (1.00)
CD320 | 4 (6%) | 58 | 1 (1.00) | 0.851 (1.00) | 1 (1.00) |  | 0.739 (1.00) | 0.658 (1.00) | 0.4 (1.00) | 0.228 (1.00) | 0.232 (1.00) | 0.26 (1.00)
SEMA5B | 8 (13%) | 54 | 0.339 (1.00) | 0.268 (1.00) | 0.311 (1.00) | 0.175 (1.00) | 0.4 (1.00) | 0.214 (1.00) | 0.647 (1.00) | 0.297 (1.00) | 0.359 (1.00) | 0.408 (1.00)
CCDC150 | 4 (6%) | 58 | 0.177 (1.00) | 0.851 (1.00) | 0.226 (1.00) | 0.605 (1.00) | 0.238 (1.00) | 0.118 (1.00) | 0.402 (1.00) | 0.213 (1.00) | 1 (1.00) | 0.453 (1.00)
TAF5 | 4 (6%) | 58 | 1 (1.00) | 0.77 (1.00) | 0.583 (1.00) | 0.953 (1.00) | 1 (1.00) | 0.877 (1.00) | 0.01 (1.00) | 0.116 (1.00) | 0.0566 (1.00) | 0.0139 (1.00)
GARS | 19 (31%) | 43 | 0.0763 (1.00) | 0.0913 (1.00) | 0.228 (1.00) | 0.335 (1.00) | 0.342 (1.00) | 0.103 (1.00) | 0.116 (1.00) | 0.4 (1.00) | 0.214 (1.00) | 0.397 (1.00)
MUC5B | 22 (35%) | 40 | 1 (1.00) | 0.627 (1.00) | 1 (1.00) | 0.812 (1.00) | 0.728 (1.00) | 0.671 (1.00) | 0.719 (1.00) | 0.615 (1.00) | 1 (1.00) | 0.53 (1.00)
KIAA1984 | 4 (6%) | 58 | 0.422 (1.00) | 0.709 (1.00) | 0.226 (1.00) | 0.502 (1.00) | 0.127 (1.00) | 0.049 (1.00) | 0.031 (1.00) | 0.584 (1.00) | 0.663 (1.00) | 0.792 (1.00)
SRPX | 3 (5%) | 59 | 0.753 (1.00) | 0.114 (1.00) | 1 (1.00) |  | 0.619 (1.00) | 1 (1.00) | 0.776 (1.00) | 0.718 (1.00) | 1 (1.00) | 0.399 (1.00)
TNIP2 | 5 (8%) | 57 | 0.631 (1.00) | 0.707 (1.00) | 1 (1.00) |  | 0.74 (1.00) | 0.877 (1.00) | 1 (1.00) | 0.412 (1.00) | 1 (1.00) | 0.453 (1.00)
IDUA | 8 (13%) | 54 | 0.38 (1.00) | 0.853 (1.00) | 1 (1.00) | 0.793 (1.00) | 0.512 (1.00) | 0.549 (1.00) | 0.202 (1.00) | 0.432 (1.00) | 0.458 (1.00) | 0.648 (1.00)
RNF39 | 5 (8%) | 57 | 0.724 (1.00) | 0.377 (1.00) | 0.6 (1.00) | 0.793 (1.00) | 0.175 (1.00) | 0.265 (1.00) | 0.158 (1.00) | 0.702 (1.00) | 0.24 (1.00) | 0.681 (1.00)
PABPC1 | 4 (6%) | 58 | 0.418 (1.00) |  | 0.464 (1.00) |  |  |  |  |  |  |
SCRT1 | 3 (5%) | 59 | 1 (1.00) | 0.427 (1.00) | 0.464 (1.00) |  | 0.473 (1.00) | 0.616 (1.00) | 0.426 (1.00) | 0.794 (1.00) | 0.469 (1.00) | 1 (1.00)
MAP1S | 5 (8%) | 57 | 0.157 (1.00) | 0.278 (1.00) | 1 (1.00) | 0.415 (1.00) | 0.398 (1.00) | 1 (1.00) | 1 (1.00) | 0.834 (1.00) | 0.422 (1.00) | 0.837 (1.00)
NF1 | 7 (11%) | 55 | 0.253 (1.00) | 0.903 (1.00) | 0.102 (1.00) | 0.394 (1.00) | 0.359 (1.00) | 0.188 (1.00) | 0.279 (1.00) | 0.883 (1.00) | 1 (1.00) | 0.0976 (1.00)
AKAP2 | 4 (6%) | 58 | 0.107 (1.00) | 0.432 (1.00) | 1 (1.00) | 0.675 (1.00) | 0.738 (1.00) | 0.173 (1.00) | 0.531 (1.00) | 0.442 (1.00) | 0.823 (1.00) | 0.352 (1.00)
NOTCH2 | 5 (8%) | 57 | 0.28 (1.00) | 0.896 (1.00) | 1 (1.00) |  | 0.522 (1.00) | 0.117 (1.00) | 0.0316 (1.00) | 0.319 (1.00) | 0.663 (1.00) | 0.795 (1.00)
FANK1 | 4 (6%) | 58 | 1 (1.00) | 0.325 (1.00) | 1 (1.00) |  | 0.856 (1.00) | 0.289 (1.00) | 0.778 (1.00) | 0.229 (1.00) | 0.775 (1.00) | 0.258 (1.00)
NEFH | 6 (10%) | 56 | 0.0503 (1.00) | 0.173 (1.00) | 0.484 (1.00) |  | 0.114 (1.00) | 0.0503 (1.00) | 0.4 (1.00) | 0.21 (1.00) | 0.665 (1.00) | 0.452 (1.00)
NPTX1 | 3 (5%) | 59 | 0.64 (1.00) | 1 (1.00) | 0.464 (1.00) |  | 1 (1.00) | 0.816 (1.00) | 0.584 (1.00) | 0.792 (1.00) | 0.353 (1.00) | 0.556 (1.00)
KBTBD13 | 9 (15%) | 53 | 0.457 (1.00) | 0.115 (1.00) | 0.311 (1.00) | 0.792 (1.00) | 0.687 (1.00) | 0.118 (1.00) | 1 (1.00) | 0.328 (1.00) | 1 (1.00) | 0.601 (1.00)
RASIP1 | 6 (10%) | 56 | 0.359 (1.00) | 0.349 (1.00) | 1 (1.00) |  | 0.0425 (1.00) | 0.187 (1.00) | 0.0563 (1.00) | 0.695 (1.00) | 0.414 (1.00) | 0.714 (1.00)
AR | 4 (6%) | 58 | 0.417 (1.00) | 0.515 (1.00) | 1 (1.00) | 0.954 (1.00) | 0.476 (1.00) | 0.441 (1.00) | 0.428 (1.00) | 1 (1.00) | 0.256 (1.00) | 1 (1.00)
KNDC1 | 9 (15%) | 53 | 0.354 (1.00) | 0.0652 (1.00) | 1 (1.00) | 0.551 (1.00) | 0.026 (1.00) | 0.325 (1.00) | 0.421 (1.00) | 0.367 (1.00) | 0.187 (1.00) | 0.381 (1.00)
SEZ6L2 | 8 (13%) | 54 | 0.382 (1.00) | 0.666 (1.00) | 1 (1.00) | 0.788 (1.00) | 0.828 (1.00) | 1 (1.00) | 0.462 (1.00) | 0.628 (1.00) | 1 (1.00) | 0.848 (1.00)
VARS | 6 (10%) | 56 | 1 (1.00) | 0.423 (1.00) | 0.226 (1.00) | 0.383 (1.00) | 0.215 (1.00) | 0.0665 (1.00) | 0.646 (1.00) | 0.863 (1.00) | 0.748 (1.00) | 1 (1.00)
IER5 | 3 (5%) | 59 | 0.197 (1.00) |  | 0.464 (1.00) |  |  |  |  |  |  |
NMU | 5 (8%) | 57 | 0.915 (1.00) | 1 (1.00) | 0.464 (1.00) |  | 0.0701 (1.00) | 0.618 (1.00) | 1 (1.00) | 0.543 (1.00) | 0.824 (1.00) | 0.617 (1.00)
TMEM189 | 3 (5%) | 59 | 0.198 (1.00) |  | 0.464 (1.00) |  |  |  |  |  |  |
ADAD2 | 4 (6%) | 58 | 0.421 (1.00) | 0.575 (1.00) | 1 (1.00) |  | 0.738 (1.00) | 0.171 (1.00) | 0.00898 (1.00) | 0.511 (1.00) | 0.0558 (1.00) | 0.352 (1.00)
PLEC | 13 (21%) | 49 | 0.428 (1.00) | 0.672 (1.00) | 0.333 (1.00) | 0.046 (1.00) | 0.204 (1.00) | 0.72 (1.00) | 0.597 (1.00) | 0.636 (1.00) | 0.142 (1.00) | 0.624 (1.00)
RGMB | 6 (10%) | 56 | 0.652 (1.00) |  | 1 (1.00) |  |  |  |  |  |  |
CLIC6 | 5 (8%) | 57 | 0.631 (1.00) | 1 (1.00) | 0.206 (1.00) |  | 0.667 (1.00) | 0.118 (1.00) | 0.178 (1.00) | 0.581 (1.00) | 0.296 (1.00) | 1 (1.00)
ZNF814 | 3 (5%) | 59 | 1 (1.00) |  | 1 (1.00) |  |  |  |  |  |  |
DSPP | 9 (15%) | 53 | 0.614 (1.00) | 0.0612 (1.00) | 1 (1.00) | 0.694 (1.00) | 1 (1.00) | 0.481 (1.00) | 0.448 (1.00) | 0.536 (1.00) | 0.901 (1.00) | 1 (1.00)
AMDHD1 | 10 (16%) | 52 | 0.656 (1.00) | 0.755 (1.00) | 0.226 (1.00) | 0.351 (1.00) | 0.585 (1.00) | 0.136 (1.00) | 0.174 (1.00) | 0.852 (1.00) | 0.904 (1.00) | 0.681 (1.00)
CRIPAK | 10 (16%) | 52 | 0.385 (1.00) | 0.926 (1.00) | 0.6 (1.00) | 0.935 (1.00) | 0.49 (1.00) | 0.69 (1.00) | 0.893 (1.00) | 0.329 (1.00) | 0.476 (1.00) | 0.366 (1.00)
NOM1 | 6 (10%) | 56 | 1 (1.00) | 0.312 (1.00) | 1 (1.00) |  | 0.865 (1.00) | 1 (1.00) | 1 (1.00) | 0.787 (1.00) | 0.42 (1.00) | 1 (1.00)
MAP7 | 3 (5%) | 59 | 1 (1.00) | 0.648 (1.00) | 0.464 (1.00) |  | 1 (1.00) | 0.814 (1.00) | 0.58 (1.00) | 0.793 (1.00) | 1 (1.00) | 0.557 (1.00)
PTX4 | 3 (5%) | 59 | 1 (1.00) | 1 (1.00) | 1 (1.00) |  | 0.472 (1.00) | 0.195 (1.00) | 0.431 (1.00) | 1 (1.00) | 0.253 (1.00) | 0.254 (1.00)
LRP11 | 6 (10%) | 56 | 1 (1.00) | 0.0812 (1.00) | 1 (1.00) |  | 0.799 (1.00) | 0.663 (1.00) | 0.579 (1.00) | 0.937 (1.00) | 0.84 (1.00) | 0.837 (1.00)
PDCD6 | 3 (5%) | 59 | 0.302 (1.00) | 0.65 (1.00) | 0.464 (1.00) |  |  |  | 1 (1.00) | 0.64 (1.00) | 1 (1.00) | 1 (1.00)
SHOX2 | 3 (5%) | 59 | 0.412 (1.00) |  | 0.464 (1.00) |  |  |  |  |  |  |
UQCRFS1 | 5 (8%) | 57 | 0.75 (1.00) | 0.586 (1.00) | 0.484 (1.00) |  | 1 (1.00) | 0.877 (1.00) | 0.486 (1.00) | 0.204 (1.00) | 0.843 (1.00) | 0.333 (1.00)
CTBP2 | 3 (5%) | 59 | 0.754 (1.00) |  | 1 (1.00) |  |  |  |  |  |  |
PRKAR1A | 6 (10%) | 56 | 0.616 (1.00) | 1 (1.00) | 0.6 (1.00) | 0.794 (1.00) | 0.279 (1.00) | 0.399 (1.00) | 0.104 (1.00) | 0.587 (1.00) | 0.0481 (1.00) | 0.589 (1.00)
JMJD4 | 3 (5%) | 59 | 1 (1.00) |  | 0.484 (1.00) |  |  |  |  |  |  |
HSD17B1 | 4 (6%) | 58 | 0.915 (1.00) | 0.0499 (1.00) | 0.583 (1.00) | 0.504 (1.00) | 0.907 (1.00) | 0.00799 (1.00) | 1 (1.00) | 0.842 (1.00) | 0.553 (1.00) | 0.794 (1.00)
COQ2 | 5 (8%) | 57 | 0.362 (1.00) | 0.766 (1.00) | 1 (1.00) |  | 0.441 (1.00) | 0.6 (1.00) | 1 (1.00) | 0.673 (1.00) | 0.549 (1.00) | 0.62 (1.00)
FEZ2 | 3 (5%) | 59 | 0.467 (1.00) | 0.352 (1.00) | 1 (1.00) |  | 0.222 (1.00) | 0.814 (1.00) | 0.193 (1.00) | 0.794 (1.00) | 0.774 (1.00) | 0.553 (1.00)
DLEU7 | 3 (5%) | 59 | 0.528 (1.00) |  | 1 (1.00) |  |  |  |  |  |  |
RNF135 | 3 (5%) | 59 | 0.754 (1.00) |  | 0.464 (1.00) |  |  |  |  |  |  |
SPIRE2 | 3 (5%) | 59 | 0.299 (1.00) | 0.0383 (1.00) | 1 (1.00) |  | 1 (1.00) | 0.815 (1.00) | 1 (1.00) | 0.792 (1.00) | 1 (1.00) | 1 (1.00)
KRTAP5-5 | 3 (5%) | 59 | 1 (1.00) |  |  |  |  |  |  |  |  |
SGK223 | 3 (5%) | 59 | 0.755 (1.00) |  | 1 (1.00) |  |  |  |  |  |  |
C9ORF66 | 5 (8%) | 57 | 1 (1.00) | 0.926 (1.00) | 1 (1.00) |  | 1 (1.00) | 0.516 (1.00) | 0.581 (1.00) | 0.935 (1.00) | 0.347 (1.00) | 0.542 (1.00)
AQP7 | 3 (5%) | 59 | 0.755 (1.00) |  |  |  |  |  |  |  |  |
ADAMTS7 | 4 (6%) | 58 | 0.2 (1.00) | 0.479 (1.00) | 0.0873 (1.00) | 0.349 (1.00) | 0.0914 (1.00) | 0.437 (1.00) | 0.0824 (1.00) | 0.26 (1.00) | 0.122 (1.00) | 0.0391 (1.00)
PCDHB13 | 5 (8%) | 57 | 0.393 (1.00) | 0.141 (1.00) | 0.484 (1.00) |  | 0.129 (1.00) | 0.355 (1.00) | 0.667 (1.00) | 0.0601 (1.00) | 0.436 (1.00) | 0.453 (1.00)
CSGALNACT2 | 3 (5%) | 59 | 0.16 (1.00) | 0.0383 (1.00) | 0.464 (1.00) |  | 0.773 (1.00) | 0.813 (1.00) | 0.58 (1.00) | 0.874 (1.00) | 0.349 (1.00) | 0.402 (1.00)
HLA-A | 3 (5%) | 59 | 1 (1.00) | 1 (1.00) | 1 (1.00) |  | 0.856 (1.00) | 0.196 (1.00) | 1 (1.00) | 0.51 (1.00) | 0.776 (1.00) | 0.257 (1.00)
MTFMT | 3 (5%) | 59 | 1 (1.00) |  | 1 (1.00) |  |  |  |  |  |  |
NLRP5 | 4 (6%) | 58 | 0.914 (1.00) | 0.17 (1.00) | 0.464 (1.00) |  | 1 (1.00) | 0.121 (1.00) | 0.777 (1.00) | 0.642 (1.00) | 1 (1.00) | 0.0772 (1.00)
KCNJ11 | 4 (6%) | 58 | 0.0207 (1.00) | 0.705 (1.00) | 1 (1.00) |  | 0.438 (1.00) | 0.228 (1.00) | 0.126 (1.00) | 0.0536 (1.00) | 0.29 (1.00) | 0.259 (1.00)

'ZFPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1. Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
ZFPM1 MUTATED | 10 | 8 | 3 | 3
ZFPM1 WILD-TYPE | 11 | 12 | 7 | 6

'ZFPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S2. Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
ZFPM1 MUTATED | 6 | 4 | 4 | 5 | 2
ZFPM1 WILD-TYPE | 7 | 4 | 10 | 8 | 5

'ZFPM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S3. Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
ZFPM1 MUTATED | 5 | 7
ZFPM1 WILD-TYPE | 8 | 8

'ZFPM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S4. Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
ZFPM1 MUTATED | 2 | 4 | 1 | 1 | 1 | 1 | 1 | 1
ZFPM1 WILD-TYPE | 3 | 2 | 4 | 2 | 2 | 0 | 2 | 1

'ZFPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S5. Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
ZFPM1 MUTATED | 7 | 1 | 7 | 6
ZFPM1 WILD-TYPE | 9 | 7 | 7 | 10

'ZFPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S6. Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
ZFPM1 MUTATED | 8 | 6 | 1 | 6
ZFPM1 WILD-TYPE | 8 | 10 | 3 | 12

'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S7. Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
ZFPM1 MUTATED | 10 | 5 | 6
ZFPM1 WILD-TYPE | 16 | 6 | 12

'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S8. Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
ZFPM1 MUTATED | 5 | 8 | 2 | 5 | 1
ZFPM1 WILD-TYPE | 8 | 10 | 6 | 9 | 1

'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S9. Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
ZFPM1 MUTATED | 9 | 7 | 5
ZFPM1 WILD-TYPE | 12 | 7 | 14

'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S10. Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
ZFPM1 MUTATED | 12 | 7 | 2
ZFPM1 WILD-TYPE | 18 | 9 | 6

'LACTB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S11. Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
LACTB MUTATED | 6 | 5 | 3 | 5
LACTB WILD-TYPE | 15 | 15 | 7 | 4

'LACTB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S12. Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
LACTB MUTATED | 2 | 3 | 5 | 4 | 3
LACTB WILD-TYPE | 11 | 5 | 9 | 9 | 4

'LACTB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S13. Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
LACTB MUTATED | 3 | 5
LACTB WILD-TYPE | 10 | 10

'LACTB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S14. Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
LACTB MUTATED | 2 | 1 | 2 | 0 | 2 | 0 | 0 | 1
LACTB WILD-TYPE | 3 | 5 | 3 | 3 | 1 | 1 | 3 | 1

'LACTB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15. Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
LACTB MUTATED | 5 | 2 | 5 | 5
LACTB WILD-TYPE | 11 | 6 | 9 | 11

'LACTB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S16. Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
LACTB MUTATED | 4 | 5 | 3 | 5
LACTB WILD-TYPE | 12 | 11 | 1 | 13

'LACTB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S17. Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
LACTB MUTATED | 6 | 5 | 6
LACTB WILD-TYPE | 20 | 6 | 12

'LACTB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S18. Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
LACTB MUTATED | 4 | 5 | 4 | 4 | 0
LACTB WILD-TYPE | 9 | 13 | 4 | 10 | 2

'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S19. Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
LACTB MUTATED | 8 | 2 | 7
LACTB WILD-TYPE | 13 | 12 | 12

'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S20. Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
LACTB MUTATED | 8 | 4 | 5
LACTB WILD-TYPE | 22 | 12 | 3

'CCDC102A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 1

Table S21. Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
CCDC102A MUTATED | 4 | 8 | 0 | 5
CCDC102A WILD-TYPE | 17 | 12 | 10 | 4

Figure S1. Get High-res Image Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC102A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S22. Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
CCDC102A MUTATED | 3 | 2 | 4 | 4 | 3
CCDC102A WILD-TYPE | 10 | 6 | 10 | 9 | 4

'CCDC102A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S23. Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
CCDC102A MUTATED | 4 | 3
CCDC102A WILD-TYPE | 9 | 12

'CCDC102A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S24. Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
CCDC102A MUTATED | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1
CCDC102A WILD-TYPE | 4 | 5 | 5 | 2 | 2 | 0 | 2 | 1

'CCDC102A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S25. Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
CCDC102A MUTATED | 4 | 3 | 4 | 5
CCDC102A WILD-TYPE | 12 | 5 | 10 | 11

'CCDC102A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S26. Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
CCDC102A MUTATED | 4 | 4 | 1 | 7
CCDC102A WILD-TYPE | 12 | 12 | 3 | 11

'CCDC102A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S27. Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
CCDC102A MUTATED | 7 | 2 | 7
CCDC102A WILD-TYPE | 19 | 9 | 11

'CCDC102A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S28. Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
CCDC102A MUTATED | 2 | 6 | 4 | 4 | 0
CCDC102A WILD-TYPE | 11 | 12 | 4 | 10 | 2

'CCDC102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S29. Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
CCDC102A MUTATED | 7 | 3 | 6
CCDC102A WILD-TYPE | 14 | 11 | 13

'CCDC102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S30. Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
CCDC102A MUTATED | 7 | 6 | 3
CCDC102A WILD-TYPE | 23 | 10 | 5

'ZNF517 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S31. Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
ZNF517 MUTATED | 7 | 5 | 0 | 1
ZNF517 WILD-TYPE | 14 | 15 | 10 | 8

'ZNF517 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S32. Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
ZNF517 MUTATED | 3 | 1 | 2 | 2 | 1
ZNF517 WILD-TYPE | 10 | 7 | 12 | 11 | 6

'ZNF517 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S33. Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
ZNF517 MUTATED | 1 | 1
ZNF517 WILD-TYPE | 12 | 14

'ZNF517 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S34. Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
ZNF517 MUTATED | 4 | 1 | 2 | 2
ZNF517 WILD-TYPE | 12 | 7 | 12 | 14

'ZNF517 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S35. Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
ZNF517 MUTATED | 3 | 2 | 1 | 3
ZNF517 WILD-TYPE | 13 | 14 | 3 | 15

'ZNF517 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S36. Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
ZNF517 MUTATED | 3 | 4 | 2
ZNF517 WILD-TYPE | 23 | 7 | 16

'ZNF517 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S37. Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
ZNF517 MUTATED | 1 | 3 | 1 | 4 | 0
ZNF517 WILD-TYPE | 12 | 15 | 7 | 10 | 2

'ZNF517 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S38. Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
ZNF517 MUTATED | 4 | 3 | 2
ZNF517 WILD-TYPE | 17 | 11 | 17

'ZNF517 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S39. Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
ZNF517 MUTATED | 5 | 2 | 2
ZNF517 WILD-TYPE | 25 | 14 | 6

'MAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S40. Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
MAL2 MUTATED | 4 | 5 | 2 | 0
MAL2 WILD-TYPE | 17 | 15 | 8 | 9

'MAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S41. Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
MAL2 MUTATED | 3 | 2 | 0 | 2 | 1
MAL2 WILD-TYPE | 10 | 6 | 14 | 11 | 6

'MAL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S42. Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
MAL2 MUTATED | 2 | 2
MAL2 WILD-TYPE | 11 | 13

'MAL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S43. Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
MAL2 MUTATED | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0
MAL2 WILD-TYPE | 4 | 5 | 4 | 2 | 3 | 1 | 3 | 2

'MAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S44. Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
MAL2 MUTATED | 3 | 2 | 0 | 3
MAL2 WILD-TYPE | 13 | 6 | 14 | 13

'MAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S45. Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
MAL2 MUTATED | 4 | 1 | 0 | 3
MAL2 WILD-TYPE | 12 | 15 | 4 | 15

'MAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S46. Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
MAL2 MUTATED | 2 | 3 | 3
MAL2 WILD-TYPE | 24 | 8 | 15

'MAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S47. Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
MAL2 MUTATED | 0 | 3 | 1 | 4 | 0
MAL2 WILD-TYPE | 13 | 15 | 7 | 10 | 2

'MAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S48. Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
MAL2 MUTATED | 3 | 2 | 3
MAL2 WILD-TYPE | 18 | 12 | 16

'MAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S49. Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
MAL2 MUTATED | 4 | 3 | 1
MAL2 WILD-TYPE | 26 | 13 | 7

'CLDN23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S50. Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
CLDN23 MUTATED | 2 | 5 | 1 | 2
CLDN23 WILD-TYPE | 19 | 15 | 9 | 7

'CLDN23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S51. Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
CLDN23 MUTATED | 1 | 2 | 1 | 3 | 3
CLDN23 WILD-TYPE | 12 | 6 | 13 | 10 | 4

'CLDN23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S52. Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
CLDN23 MUTATED | 1 | 2
CLDN23 WILD-TYPE | 12 | 13

'CLDN23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S53. Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
CLDN23 MUTATED | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1
CLDN23 WILD-TYPE | 4 | 6 | 5 | 3 | 2 | 1 | 3 | 1

'CLDN23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 1

Table S54. Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
CLDN23 MUTATED | 1 | 1 | 1 | 7
CLDN23 WILD-TYPE | 15 | 7 | 13 | 9

Figure S2. Get High-res Image Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CLDN23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S55. Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
CLDN23 MUTATED | 3 | 1 | 0 | 6
CLDN23 WILD-TYPE | 13 | 15 | 4 | 12

'CLDN23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 1

Table S56. Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
CLDN23 MUTATED | 2 | 2 | 6
CLDN23 WILD-TYPE | 24 | 9 | 12

'CLDN23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S57. Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
CLDN23 MUTATED | 1 | 4 | 3 | 1 | 1
CLDN23 WILD-TYPE | 12 | 14 | 5 | 13 | 1

'CLDN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S58. Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
CLDN23 MUTATED | 4 | 1 | 5
CLDN23 WILD-TYPE | 17 | 13 | 14

'CLDN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S59. Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
CLDN23 MUTATED | 4 | 4 | 2
CLDN23 WILD-TYPE | 26 | 12 | 6

'TOR3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S60. Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
TOR3A MUTATED | 6 | 3 | 1 | 1
TOR3A WILD-TYPE | 15 | 17 | 9 | 8

'TOR3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 1

Table S61. Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
TOR3A MUTATED | 0 | 0 | 4 | 6 | 1
TOR3A WILD-TYPE | 13 | 8 | 10 | 7 | 6

Figure S3. Get High-res Image Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TOR3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S62. Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
TOR3A MUTATED | 4 | 1
TOR3A WILD-TYPE | 9 | 14

'TOR3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S63. Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
TOR3A MUTATED | 0 | 1 | 2 | 0 | 0 | 1 | 1 | 0
TOR3A WILD-TYPE | 5 | 5 | 3 | 3 | 3 | 0 | 2 | 2

'TOR3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S64. Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
TOR3A MUTATED | 2 | 1 | 4 | 4
TOR3A WILD-TYPE | 14 | 7 | 10 | 12

'TOR3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00482 (Fisher's exact test), Q value = 1

Table S65. Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
TOR3A MUTATED | 0 | 3 | 3 | 5
TOR3A WILD-TYPE | 16 | 13 | 1 | 13

Figure S4. Get High-res Image Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TOR3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S66. Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
TOR3A MUTATED | 5 | 2 | 4
TOR3A WILD-TYPE | 21 | 9 | 14

'TOR3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S67. Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
TOR3A MUTATED | 2 | 5 | 2 | 2 | 0
TOR3A WILD-TYPE | 11 | 13 | 6 | 12 | 2

'TOR3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S68. Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
TOR3A MUTATED | 5 | 2 | 4
TOR3A WILD-TYPE | 16 | 12 | 15

'TOR3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S69. Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
TOR3A MUTATED | 6 | 4 | 1
TOR3A WILD-TYPE | 24 | 12 | 7

'USP42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S70. Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
USP42 MUTATED | 5 | 4 | 2 | 4
USP42 WILD-TYPE | 16 | 16 | 8 | 5

'USP42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 1

Table S71. Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
USP42 MUTATED | 2 | 4 | 0 | 3 | 2
USP42 WILD-TYPE | 11 | 4 | 14 | 10 | 5

Figure S5. Get High-res Image Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USP42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S72. Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
USP42 MUTATED | 2 | 5
USP42 WILD-TYPE | 11 | 10

'USP42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S73. Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
USP42 MUTATED | 2 | 2 | 0 | 1 | 1 | 1 | 0 | 0
USP42 WILD-TYPE | 3 | 4 | 5 | 2 | 2 | 0 | 3 | 2

'USP42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S74. Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
USP42 MUTATED | 3 | 2 | 3 | 3
USP42 WILD-TYPE | 13 | 6 | 11 | 13

'USP42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S75. Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
USP42 MUTATED | 3 | 4 | 1 | 3
USP42 WILD-TYPE | 13 | 12 | 3 | 15

'USP42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S76. Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
USP42 MUTATED | 6 | 3 | 2
USP42 WILD-TYPE | 20 | 8 | 16

'USP42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S77. Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
USP42 MUTATED | 2 | 3 | 2 | 4 | 0
USP42 WILD-TYPE | 11 | 15 | 6 | 10 | 2

'USP42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S78. Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
USP42 MUTATED | 5 | 2 | 4
USP42 WILD-TYPE | 16 | 12 | 15

'USP42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S79. Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
USP42 MUTATED | 7 | 3 | 1
USP42 WILD-TYPE | 23 | 13 | 7

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S80. Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
TP53 MUTATED | 5 | 1 | 3 | 3
TP53 WILD-TYPE | 16 | 19 | 7 | 6

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S81. Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
TP53 MUTATED | 2 | 3 | 3 | 2 | 1
TP53 WILD-TYPE | 11 | 5 | 11 | 11 | 6

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S82. Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
TP53 MUTATED | 2 | 5
TP53 WILD-TYPE | 11 | 10

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S83. Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
TP53 MUTATED | 3 | 2 | 0 | 1 | 0 | 0 | 1 | 0
TP53 WILD-TYPE | 2 | 4 | 5 | 2 | 3 | 1 | 2 | 2

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 1

Table S84. Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
TP53 MUTATED | 3 | 2 | 6 | 0
TP53 WILD-TYPE | 13 | 6 | 8 | 16

Figure S6. Get High-res Image Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S85. Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
TP53 MUTATED | 4 | 4 | 1 | 2
TP53 WILD-TYPE | 12 | 12 | 3 | 16

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 1

Table S86. Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
TP53 MUTATED | 7 | 4 | 0
TP53 WILD-TYPE | 19 | 7 | 18

Figure S7. Get High-res Image Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S87. Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
TP53 MUTATED | 4 | 2 | 2 | 3 | 0
TP53 WILD-TYPE | 9 | 16 | 6 | 11 | 2

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0066 (Fisher's exact test), Q value = 1

Table S88. Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
TP53 MUTATED | 8 | 3 | 0
TP53 WILD-TYPE | 13 | 11 | 19

Figure S8. Get High-res Image Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S89. Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
TP53 MUTATED | 9 | 1 | 1
TP53 WILD-TYPE | 21 | 15 | 7

'APOE MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S90. Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
APOE MUTATED | 3 | 2 | 1 | 1
APOE WILD-TYPE | 18 | 18 | 9 | 8

'APOE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S91. Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
APOE MUTATED | 1 | 0 | 3 | 2 | 0
APOE WILD-TYPE | 12 | 8 | 11 | 11 | 7

'APOE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S92. Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
APOE MUTATED | 1 | 2
APOE WILD-TYPE | 12 | 13

'APOE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S93. Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
APOE MUTATED | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1
APOE WILD-TYPE | 5 | 5 | 5 | 3 | 3 | 1 | 2 | 1

'APOE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 1

Table S94. Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
APOE MUTATED | 2 | 0 | 4 | 0
APOE WILD-TYPE | 14 | 8 | 10 | 16

'APOE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S95. Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
APOE MUTATED | 1 | 3 | 1 | 1
APOE WILD-TYPE | 15 | 13 | 3 | 17

'APOE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S96. Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
APOE MUTATED | 2 | 3 | 1
APOE WILD-TYPE | 24 | 8 | 17

'APOE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S97. Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
APOE MUTATED | 1 | 3 | 0 | 2 | 0
APOE WILD-TYPE | 12 | 15 | 8 | 12 | 2

'APOE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S98. Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
APOE MUTATED | 2 | 3 | 1
APOE WILD-TYPE | 19 | 11 | 18

'APOE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S99. Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
APOE MUTATED | 3 | 2 | 1
APOE WILD-TYPE | 27 | 14 | 7

'ZAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S100. Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
ZAR1 MUTATED | 4 | 3 | 1 | 3
ZAR1 WILD-TYPE | 17 | 17 | 9 | 6

'ZAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S101. Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
ZAR1 MUTATED | 3 | 1 | 1 | 2 | 2
ZAR1 WILD-TYPE | 10 | 7 | 13 | 11 | 5

'ZAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S102. Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
ZAR1 MUTATED | 2 | 2
ZAR1 WILD-TYPE | 11 | 13

'ZAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S103. Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
ZAR1 MUTATED | 0 | 2 | 1 | 0 | 1 | 0 | 0 | 0
ZAR1 WILD-TYPE | 5 | 4 | 4 | 3 | 2 | 1 | 3 | 2

'ZAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S104. Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
ZAR1 MUTATED | 3 | 0 | 2 | 4
ZAR1 WILD-TYPE | 13 | 8 | 12 | 12

'ZAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S105. Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
ZAR1 MUTATED | 3 | 2 | 0 | 4
ZAR1 WILD-TYPE | 13 | 14 | 4 | 14

'ZAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S106. Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
ZAR1 MUTATED | 4 | 1 | 4
ZAR1 WILD-TYPE | 22 | 10 | 14

'ZAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S107. Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
ZAR1 MUTATED | 2 | 4 | 1 | 2 | 0
ZAR1 WILD-TYPE | 11 | 14 | 7 | 12 | 2

'ZAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S108. Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
ZAR1 MUTATED | 4 | 2 | 3
ZAR1 WILD-TYPE | 17 | 12 | 16

'ZAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S109. Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
ZAR1 MUTATED | 4 | 4 | 1
ZAR1 WILD-TYPE | 26 | 12 | 7

'ASPDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S110. Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
ASPDH MUTATED | 3 | 2 | 3 | 0
ASPDH WILD-TYPE | 18 | 18 | 7 | 9

'ASPDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S111. Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
ASPDH MUTATED | 3 | 1 | 3 | 1 | 0
ASPDH WILD-TYPE | 10 | 7 | 11 | 12 | 7

'ASPDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S112. Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
ASPDH MUTATED | 2 | 3
ASPDH WILD-TYPE | 11 | 12

'ASPDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S113. Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
ASPDH MUTATED | 0 | 3 | 0 | 1 | 0 | 0 | 1 | 0
ASPDH WILD-TYPE | 5 | 3 | 5 | 2 | 3 | 1 | 2 | 2

'ASPDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 1

Table S114. Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
ASPDH MUTATED | 3 | 0 | 5 | 0
ASPDH WILD-TYPE | 13 | 8 | 9 | 16

Figure S9. Get High-res Image Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ASPDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S115. Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
ASPDH MUTATED | 3 | 4 | 0 | 1
ASPDH WILD-TYPE | 13 | 12 | 4 | 17

'ASPDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S116. Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
ASPDH MUTATED | 5 | 2 | 1
ASPDH WILD-TYPE | 21 | 9 | 17

'ASPDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0305 (Fisher's exact test), Q value = 1

Table S117. Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
ASPDH MUTATED | 4 | 0 | 0 | 4 | 0
ASPDH WILD-TYPE | 9 | 18 | 8 | 10 | 2

Figure S10. Get High-res Image Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ASPDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S118. Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
ASPDH MUTATED | 3 | 4 | 1
ASPDH WILD-TYPE | 18 | 10 | 18

'ASPDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0818 (Fisher's exact test), Q value = 1

Table S119. Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
ASPDH MUTATED | 7 | 0 | 1
ASPDH WILD-TYPE | 23 | 16 | 7

'KCNK17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S120. Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
KCNK17 MUTATED | 3 | 1 | 2 | 3
KCNK17 WILD-TYPE | 18 | 19 | 8 | 6

'KCNK17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 1

Table S121. Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
KCNK17 MUTATED | 0 | 2 | 5 | 1 | 0
KCNK17 WILD-TYPE | 13 | 6 | 9 | 12 | 7

Figure S11. Get High-res Image Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNK17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 1

Table S122. Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
KCNK17 MUTATED | 0 | 6
KCNK17 WILD-TYPE | 13 | 9

Figure S12. Get High-res Image Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KCNK17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S123. Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
KCNK17 MUTATED | 1 | 3 | 0 | 0 | 1 | 0 | 0 | 1
KCNK17 WILD-TYPE | 4 | 3 | 5 | 3 | 2 | 1 | 3 | 1

'KCNK17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S124. Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
KCNK17 MUTATED | 1 | 1 | 5 | 1
KCNK17 WILD-TYPE | 15 | 7 | 9 | 15

'KCNK17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0088 (Fisher's exact test), Q value = 1

Table S125. Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
KCNK17 MUTATED | 0 | 6 | 1 | 1
KCNK17 WILD-TYPE | 16 | 10 | 3 | 17

Figure S13. Get High-res Image Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNK17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S126. Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
KCNK17 MUTATED | 4 | 2 | 2
KCNK17 WILD-TYPE | 22 | 9 | 16

'KCNK17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S127. Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
KCNK17 MUTATED | 3 | 1 | 2 | 2 | 0
KCNK17 WILD-TYPE | 10 | 17 | 6 | 12 | 2

'KCNK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S128. Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
KCNK17 MUTATED | 4 | 1 | 3
KCNK17 WILD-TYPE | 17 | 13 | 16

'KCNK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S129. Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
KCNK17 MUTATED | 5 | 1 | 2
KCNK17 WILD-TYPE | 25 | 15 | 6

'LZTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 1

Table S130. Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
LZTR1 MUTATED | 5 | 0 | 1 | 0
LZTR1 WILD-TYPE | 16 | 20 | 9 | 9

'LZTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S131. Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
LZTR1 MUTATED | 2 | 0 | 1 | 1 | 0
LZTR1 WILD-TYPE | 11 | 8 | 13 | 12 | 7

'LZTR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S132. Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
LZTR1 MUTATED | 0 | 1
LZTR1 WILD-TYPE | 13 | 14

'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0884 (Fisher's exact test), Q value = 1

Table S133. Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
LZTR1 MUTATED | 3 | 1 | 0 | 0
LZTR1 WILD-TYPE | 13 | 7 | 14 | 16

'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S134. Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
LZTR1 MUTATED | 2 | 1 | 1 | 0
LZTR1 WILD-TYPE | 14 | 15 | 3 | 18

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S135. Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
LZTR1 MUTATED | 3 | 1 | 0
LZTR1 WILD-TYPE | 23 | 10 | 18

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 1

Table S136. Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
LZTR1 MUTATED | 0 | 0 | 0 | 3 | 1
LZTR1 WILD-TYPE | 13 | 18 | 8 | 11 | 1

Figure S14. Get High-res Image Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S137. Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
LZTR1 MUTATED | 2 | 1 | 1
LZTR1 WILD-TYPE | 19 | 13 | 18

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S138. Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
LZTR1 MUTATED | 3 | 0 | 1
LZTR1 WILD-TYPE | 27 | 16 | 7

'ERCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S139. Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
ERCC2 MUTATED | 4 | 3 | 2 | 1
ERCC2 WILD-TYPE | 17 | 17 | 8 | 8

'ERCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S140. Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
ERCC2 MUTATED | 4 | 3 | 2 | 1 | 0
ERCC2 WILD-TYPE | 9 | 5 | 12 | 12 | 7

'ERCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 1

Table S141. Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
ERCC2 MUTATED | 1 | 7
ERCC2 WILD-TYPE | 12 | 8

Figure S15. Get High-res Image Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ERCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S142. Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
ERCC2 MUTATED | 2 | 3 | 0 | 1 | 0 | 1 | 0 | 1
ERCC2 WILD-TYPE | 3 | 3 | 5 | 2 | 3 | 0 | 3 | 1

'ERCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S143. Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
ERCC2 MUTATED | 4 | 2 | 3 | 1
ERCC2 WILD-TYPE | 12 | 6 | 11 | 15

'ERCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S144. Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
ERCC2 MUTATED | 5 | 4 | 0 | 1
ERCC2 WILD-TYPE | 11 | 12 | 4 | 17

'ERCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S145. Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
ERCC2 MUTATED | 6 | 2 | 2
ERCC2 WILD-TYPE | 20 | 9 | 16

'ERCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S146. Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
ERCC2 MUTATED | 3 | 2 | 0 | 5 | 0
ERCC2 WILD-TYPE | 10 | 16 | 8 | 9 | 2

'ERCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S147. Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
ERCC2 MUTATED | 6 | 2 | 2
ERCC2 WILD-TYPE | 15 | 12 | 17

'ERCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S148. Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
ERCC2 MUTATED | 8 | 2 | 0
ERCC2 WILD-TYPE | 22 | 14 | 8

'RINL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S149. Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
RINL MUTATED | 5 | 2 | 0 | 1
RINL WILD-TYPE | 16 | 18 | 10 | 8

'RINL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S150. Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
RINL MUTATED | 3 | 1 | 1 | 2 | 0
RINL WILD-TYPE | 10 | 7 | 13 | 11 | 7

'RINL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S151. Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
RINL MUTATED | 2 | 2
RINL WILD-TYPE | 11 | 13

'RINL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S152. Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
RINL MUTATED | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 1
RINL WILD-TYPE | 4 | 6 | 4 | 3 | 2 | 1 | 3 | 1

'RINL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S153. Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
RINL MUTATED | 4 | 1 | 1 | 1
RINL WILD-TYPE | 12 | 7 | 13 | 15

'RINL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S154. Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
RINL MUTATED | 4 | 1 | 1 | 1
RINL WILD-TYPE | 12 | 15 | 3 | 17

'RINL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S155. Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
RINL MUTATED | 3 | 2 | 2
RINL WILD-TYPE | 23 | 9 | 16

'RINL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S156. Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
RINL MUTATED | 0 | 3 | 0 | 4 | 0
RINL WILD-TYPE | 13 | 15 | 8 | 10 | 2

'RINL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S157. Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
RINL MUTATED | 1 | 3 | 3
RINL WILD-TYPE | 20 | 11 | 16

'RINL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S158. Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
RINL MUTATED | 3 | 3 | 1
RINL WILD-TYPE | 27 | 13 | 7

'SYT8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S159. Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
SYT8 MUTATED | 1 | 4 | 2 | 1
SYT8 WILD-TYPE | 20 | 16 | 8 | 8

'SYT8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S160. Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
SYT8 MUTATED | 0 | 2 | 2 | 1 | 1
SYT8 WILD-TYPE | 13 | 6 | 12 | 12 | 6

'SYT8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S161. Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
SYT8 MUTATED | 1 | 2
SYT8 WILD-TYPE | 12 | 13

'SYT8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S162. Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
SYT8 MUTATED | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0
SYT8 WILD-TYPE | 4 | 5 | 4 | 3 | 3 | 1 | 3 | 2

'SYT8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 1

Table S163. Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
SYT8 MUTATED | 0 | 3 | 1 | 2
SYT8 WILD-TYPE | 16 | 5 | 13 | 14

Figure S16. Get High-res Image Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SYT8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S164. Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
SYT8 MUTATED | 0 | 4 | 0 | 2
SYT8 WILD-TYPE | 16 | 12 | 4 | 16

'SYT8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S165. Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
SYT8 MUTATED | 3 | 1 | 2
SYT8 WILD-TYPE | 23 | 10 | 16

'SYT8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S166. Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
SYT8 MUTATED | 1 | 3 | 1 | 0 | 1
SYT8 WILD-TYPE | 12 | 15 | 7 | 14 | 1

'SYT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S167. Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
SYT8 MUTATED | 2 | 1 | 3
SYT8 WILD-TYPE | 19 | 13 | 16

'SYT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S168. Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
SYT8 MUTATED | 3 | 3 | 0
SYT8 WILD-TYPE | 27 | 13 | 8

'LRIG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S169. Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
LRIG1 MUTATED | 5 | 4 | 3 | 4
LRIG1 WILD-TYPE | 16 | 16 | 7 | 5

'LRIG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S170. Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
LRIG1 MUTATED | 3 | 2 | 2 | 3 | 1
LRIG1 WILD-TYPE | 10 | 6 | 12 | 10 | 6

'LRIG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S171. Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
LRIG1 MUTATED | 2 | 2
LRIG1 WILD-TYPE | 11 | 13

'LRIG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S172. Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
LRIG1 MUTATED | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0
LRIG1 WILD-TYPE | 4 | 5 | 4 | 2 | 3 | 1 | 3 | 2

'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S173. Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
LRIG1 MUTATED | 2 | 2 | 3 | 3
LRIG1 WILD-TYPE | 14 | 6 | 11 | 13

'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S174. Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
LRIG1 MUTATED | 3 | 2 | 0 | 5
LRIG1 WILD-TYPE | 13 | 14 | 4 | 13

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S175. Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
LRIG1 MUTATED | 4 | 4 | 3
LRIG1 WILD-TYPE | 22 | 7 | 15

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S176. Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
LRIG1 MUTATED | 1 | 3 | 3 | 4 | 0
LRIG1 WILD-TYPE | 12 | 15 | 5 | 10 | 2

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S177. Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
LRIG1 MUTATED | 3 | 4 | 4
LRIG1 WILD-TYPE | 18 | 10 | 15

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S178. Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
LRIG1 MUTATED | 7 | 3 | 1
LRIG1 WILD-TYPE | 23 | 13 | 7

'C1ORF106 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S179. Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
C1ORF106 MUTATED | 4 | 2 | 2 | 1
C1ORF106 WILD-TYPE | 17 | 18 | 8 | 8

'C1ORF106 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S180. Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
C1ORF106 MUTATED | 3 | 0 | 2 | 1 | 2
C1ORF106 WILD-TYPE | 10 | 8 | 12 | 12 | 5

'C1ORF106 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S181. Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
C1ORF106 MUTATED | 3 | 2
C1ORF106 WILD-TYPE | 10 | 13

'C1ORF106 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 1

Table S182. Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
C1ORF106 MUTATED | 1 | 0 | 0 | 2 | 2 | 0 | 0 | 0
C1ORF106 WILD-TYPE | 4 | 6 | 5 | 1 | 1 | 1 | 3 | 2

Figure S17. Get High-res Image Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C1ORF106 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S183. Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
C1ORF106 MUTATED | 4 | 2 | 1 | 1
C1ORF106 WILD-TYPE | 12 | 6 | 13 | 15

'C1ORF106 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S184. Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
C1ORF106 MUTATED | 3 | 2 | 1 | 2
C1ORF106 WILD-TYPE | 13 | 14 | 3 | 16

'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S185. Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
C1ORF106 MUTATED | 5 | 2 | 1
C1ORF106 WILD-TYPE | 21 | 9 | 17

'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S186. Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
C1ORF106 MUTATED | 1 | 2 | 2 | 3 | 0
C1ORF106 WILD-TYPE | 12 | 16 | 6 | 11 | 2

'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 1

Table S187. Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
C1ORF106 MUTATED | 5 | 3 | 0
C1ORF106 WILD-TYPE | 16 | 11 | 19

'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S188. Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
C1ORF106 MUTATED | 5 | 2 | 1
C1ORF106 WILD-TYPE | 25 | 14 | 7

'GPRIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S189. Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
GPRIN2 MUTATED | 2 | 3 | 2 | 1
GPRIN2 WILD-TYPE | 19 | 17 | 8 | 8

'GPRIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S190. Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
GPRIN2 MUTATED | 1 | 0 | 4 | 1 | 1
GPRIN2 WILD-TYPE | 12 | 8 | 10 | 12 | 6

'GPRIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S191. Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
GPRIN2 MUTATED | 2 | 2
GPRIN2 WILD-TYPE | 11 | 13

'GPRIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S192. Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
GPRIN2 MUTATED | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 1
GPRIN2 WILD-TYPE | 5 | 5 | 4 | 3 | 2 | 1 | 3 | 1

'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S193. Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
GPRIN2 MUTATED | 1 | 1 | 3 | 2
GPRIN2 WILD-TYPE | 15 | 7 | 11 | 14

'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S194. Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
GPRIN2 MUTATED | 1 | 4 | 0 | 2
GPRIN2 WILD-TYPE | 15 | 12 | 4 | 16

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S195. Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
GPRIN2 MUTATED | 2 | 2 | 3
GPRIN2 WILD-TYPE | 24 | 9 | 15

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S196. Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
GPRIN2 MUTATED | 1 | 4 | 1 | 1 | 0
GPRIN2 WILD-TYPE | 12 | 14 | 7 | 13 | 2

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S197. Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
GPRIN2 MUTATED | 2 | 3 | 2
GPRIN2 WILD-TYPE | 19 | 11 | 17

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S198. Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
GPRIN2 MUTATED | 2 | 4 | 1
GPRIN2 WILD-TYPE | 28 | 12 | 7

'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S199. Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
CTNNB1 MUTATED | 4 | 2 | 1 | 0
CTNNB1 WILD-TYPE | 17 | 18 | 9 | 9

'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S200. Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
CTNNB1 MUTATED | 3 | 2 | 1 | 0 | 0
CTNNB1 WILD-TYPE | 10 | 6 | 13 | 13 | 7

'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S201. Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
CTNNB1 MUTATED | 2 | 2
CTNNB1 WILD-TYPE | 11 | 13

'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S202. Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
CTNNB1 MUTATED | 1 | 1 | 0 | 0 | 2 | 0 | 0 | 0
CTNNB1 WILD-TYPE | 4 | 5 | 5 | 3 | 1 | 1 | 3 | 2

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 1

Table S203. Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
CTNNB1 MUTATED | 4 | 2 | 0 | 0
CTNNB1 WILD-TYPE | 12 | 6 | 14 | 16

Figure S18. Get High-res Image Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 1

Table S204. Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
CTNNB1 MUTATED | 5 | 1 | 0 | 0
CTNNB1 WILD-TYPE | 11 | 15 | 4 | 18

Figure S19. Get High-res Image Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.45

Table S205. Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
CTNNB1 MUTATED | 1 | 5 | 0
CTNNB1 WILD-TYPE | 25 | 6 | 18

Figure S20. Get High-res Image Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S206. Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
CTNNB1 MUTATED | 0 | 2 | 0 | 4 | 0
CTNNB1 WILD-TYPE | 13 | 16 | 8 | 10 | 2

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S207. Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
CTNNB1 MUTATED | 3 | 3 | 0
CTNNB1 WILD-TYPE | 18 | 11 | 19

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S208. Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
CTNNB1 MUTATED | 4 | 2 | 0
CTNNB1 WILD-TYPE | 26 | 14 | 8

'C16ORF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S209. Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
C16ORF3 MUTATED | 2 | 2 | 0 | 1
C16ORF3 WILD-TYPE | 19 | 18 | 10 | 8

'C16ORF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.45

Table S210. Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
C16ORF3 MUTATED | 0 | 4 | 0 | 0 | 1
C16ORF3 WILD-TYPE | 13 | 4 | 14 | 13 | 6

Figure S21. Get High-res Image Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C16ORF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S211. Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
C16ORF3 MUTATED | 1 | 2
C16ORF3 WILD-TYPE | 12 | 13

'C16ORF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S212. Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
C16ORF3 MUTATED | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0
C16ORF3 WILD-TYPE | 4 | 4 | 5 | 3 | 3 | 1 | 3 | 2

'C16ORF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S213. Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
C16ORF3 MUTATED | 1 | 1 | 2 | 1
C16ORF3 WILD-TYPE | 15 | 7 | 12 | 15

'C16ORF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S214. Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
C16ORF3 MUTATED | 2 | 2 | 0 | 1
C16ORF3 WILD-TYPE | 14 | 14 | 4 | 17

'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S215. Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
C16ORF3 MUTATED | 2 | 2 | 1
C16ORF3 WILD-TYPE | 24 | 9 | 17

'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S216. Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
C16ORF3 MUTATED | 1 | 2 | 1 | 1 | 0
C16ORF3 WILD-TYPE | 12 | 16 | 7 | 13 | 2

'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S217. Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
C16ORF3 MUTATED | 3 | 1 | 1
C16ORF3 WILD-TYPE | 18 | 13 | 18

'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S218. Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
C16ORF3 MUTATED | 3 | 2 | 0
C16ORF3 WILD-TYPE | 27 | 14 | 8

'CCDC105 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S219. Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
CCDC105 MUTATED | 2 | 2 | 1 | 1
CCDC105 WILD-TYPE | 19 | 18 | 9 | 8

'CCDC105 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 1

Table S220. Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
CCDC105 MUTATED | 1 | 3 | 0 | 0 | 2
CCDC105 WILD-TYPE | 12 | 5 | 14 | 13 | 5

Figure S22. Get High-res Image Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC105 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S221. Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
CCDC105 MUTATED | 0 | 3
CCDC105 WILD-TYPE | 13 | 12

'CCDC105 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S222. Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
CCDC105 MUTATED | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1
CCDC105 WILD-TYPE | 4 | 5 | 5 | 3 | 3 | 1 | 3 | 1

'CCDC105 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S223. Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
CCDC105 MUTATED | 1 | 1 | 2 | 2
CCDC105 WILD-TYPE | 15 | 7 | 12 | 14

'CCDC105 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S224. Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
CCDC105 MUTATED | 3 | 1 | 0 | 2
CCDC105 WILD-TYPE | 13 | 15 | 4 | 16

'CCDC105 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S225. Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
CCDC105 MUTATED | 3 | 1 | 2
CCDC105 WILD-TYPE | 23 | 10 | 16

'CCDC105 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0541 (Fisher's exact test), Q value = 1

Table S226. Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
CCDC105 MUTATED | 1 | 0 | 2 | 2 | 1
CCDC105 WILD-TYPE | 12 | 18 | 6 | 12 | 1

'CCDC105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S227. Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
CCDC105 MUTATED | 4 | 0 | 2
CCDC105 WILD-TYPE | 17 | 14 | 17

'CCDC105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S228. Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
CCDC105 MUTATED | 5 | 0 | 1
CCDC105 WILD-TYPE | 25 | 16 | 7

'RGS9BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S229. Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
RGS9BP MUTATED | 3 | 3 | 2 | 0
RGS9BP WILD-TYPE | 18 | 17 | 8 | 9

'RGS9BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S230. Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
RGS9BP MUTATED | 3 | 0 | 3 | 1 | 1
RGS9BP WILD-TYPE | 10 | 8 | 11 | 12 | 6

'RGS9BP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S231. Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
RGS9BP MUTATED | 1 | 2
RGS9BP WILD-TYPE | 12 | 13

'RGS9BP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S232. Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
RGS9BP MUTATED | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0
RGS9BP WILD-TYPE | 5 | 4 | 5 | 3 | 3 | 0 | 3 | 2

'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S233. Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
RGS9BP MUTATED | 2 | 1 | 2 | 2
RGS9BP WILD-TYPE | 14 | 7 | 12 | 14

'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S234. Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
RGS9BP MUTATED | 2 | 3 | 0 | 2
RGS9BP WILD-TYPE | 14 | 13 | 4 | 16

'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S235. Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
RGS9BP MUTATED | 2 | 3 | 3
RGS9BP WILD-TYPE | 24 | 8 | 15

'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S236. Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
RGS9BP MUTATED | 2 | 2 | 1 | 3 | 0
RGS9BP WILD-TYPE | 11 | 16 | 7 | 11 | 2

'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S237. Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
RGS9BP MUTATED | 2 | 4 | 2
RGS9BP WILD-TYPE | 19 | 10 | 17

'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S238. Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
RGS9BP MUTATED | 4 | 2 | 2
RGS9BP WILD-TYPE | 26 | 14 | 6

'HHIPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S239. Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
HHIPL1 MUTATED | 3 | 1 | 0 | 2
HHIPL1 WILD-TYPE | 18 | 19 | 10 | 7

'HHIPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S240. Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
HHIPL1 MUTATED | 2 | 0 | 0 | 2 | 1
HHIPL1 WILD-TYPE | 11 | 8 | 14 | 11 | 6

'HHIPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S241. Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
HHIPL1 MUTATED | 0 | 2
HHIPL1 WILD-TYPE | 13 | 13

'HHIPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S242. Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
HHIPL1 MUTATED | 3 | 0 | 1 | 1
HHIPL1 WILD-TYPE | 13 | 8 | 13 | 15

'HHIPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S243. Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
HHIPL1 MUTATED | 2 | 1 | 1 | 1
HHIPL1 WILD-TYPE | 14 | 15 | 3 | 17

'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S244. Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
HHIPL1 MUTATED | 4 | 1 | 0
HHIPL1 WILD-TYPE | 22 | 10 | 18

'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S245. Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
HHIPL1 MUTATED | 2 | 0 | 1 | 2 | 0
HHIPL1 WILD-TYPE | 11 | 18 | 7 | 12 | 2

'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S246. Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
HHIPL1 MUTATED | 4 | 0 | 1
HHIPL1 WILD-TYPE | 17 | 14 | 18

'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S247. Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
HHIPL1 MUTATED | 4 | 0 | 1
HHIPL1 WILD-TYPE | 26 | 16 | 7

'C10ORF95 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S248. Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
C10ORF95 MUTATED | 2 | 0 | 2 | 1
C10ORF95 WILD-TYPE | 19 | 20 | 8 | 8

'C10ORF95 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S249. Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
C10ORF95 MUTATED | 1 | 0 | 3 | 0 | 1
C10ORF95 WILD-TYPE | 12 | 8 | 11 | 13 | 6

'C10ORF95 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S250. Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
C10ORF95 MUTATED | 1 | 1
C10ORF95 WILD-TYPE | 12 | 14

'C10ORF95 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S251. Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
C10ORF95 MUTATED | 1 | 2 | 1 | 1
C10ORF95 WILD-TYPE | 15 | 6 | 13 | 15

'C10ORF95 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S252. Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
C10ORF95 MUTATED | 1 | 2 | 0 | 2
C10ORF95 WILD-TYPE | 15 | 14 | 4 | 16

'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S253. Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
C10ORF95 MUTATED | 4 | 0 | 1
C10ORF95 WILD-TYPE | 22 | 11 | 17

'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S254. Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
C10ORF95 MUTATED | 1 | 1 | 1 | 1 | 1
C10ORF95 WILD-TYPE | 12 | 17 | 7 | 13 | 1

'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S255. Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
C10ORF95 MUTATED | 2 | 1 | 1
C10ORF95 WILD-TYPE | 19 | 13 | 18

'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S256. Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
C10ORF95 MUTATED | 3 | 1 | 0
C10ORF95 WILD-TYPE | 27 | 15 | 8

'TSC22D2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S257. Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
TSC22D2 MUTATED | 4 | 2 | 1 | 1
TSC22D2 WILD-TYPE | 17 | 18 | 9 | 8

'TSC22D2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S258. Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
TSC22D2 MUTATED | 2 | 0 | 2 | 1 | 2
TSC22D2 WILD-TYPE | 11 | 8 | 12 | 12 | 5

'TSC22D2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S259. Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
TSC22D2 MUTATED | 1 | 2
TSC22D2 WILD-TYPE | 12 | 13

'TSC22D2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S260. Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
TSC22D2 MUTATED | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0
TSC22D2 WILD-TYPE | 5 | 5 | 4 | 3 | 2 | 1 | 3 | 2

'TSC22D2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S261. Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
TSC22D2 MUTATED | 3 | 0 | 2 | 2
TSC22D2 WILD-TYPE | 13 | 8 | 12 | 14

'TSC22D2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S262. Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
TSC22D2 MUTATED | 2 | 2 | 1 | 2
TSC22D2 WILD-TYPE | 14 | 14 | 3 | 16

'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S263. Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
TSC22D2 MUTATED | 3 | 2 | 2
TSC22D2 WILD-TYPE | 23 | 9 | 16

'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S264. Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
TSC22D2 MUTATED | 1 | 2 | 0 | 4 | 0
TSC22D2 WILD-TYPE | 12 | 16 | 8 | 10 | 2

'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S265. Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
TSC22D2 MUTATED | 1 | 3 | 3
TSC22D2 WILD-TYPE | 20 | 11 | 16

'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S266. Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
TSC22D2 MUTATED | 4 | 2 | 1
TSC22D2 WILD-TYPE | 26 | 14 | 7

'NOXA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S267. Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
NOXA1 MUTATED | 3 | 0 | 2 | 0
NOXA1 WILD-TYPE | 18 | 20 | 8 | 9

'NOXA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S268. Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
NOXA1 MUTATED | 2 | 0 | 1 | 0 | 0
NOXA1 WILD-TYPE | 11 | 8 | 13 | 13 | 7

'NOXA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S269. Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
NOXA1 MUTATED | 1 | 1
NOXA1 WILD-TYPE | 12 | 14

'NOXA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S270. Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
NOXA1 MUTATED | 2 | 1 | 0 | 0
NOXA1 WILD-TYPE | 14 | 7 | 14 | 16

'NOXA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S271. Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
NOXA1 MUTATED | 2 | 1 | 0 | 0
NOXA1 WILD-TYPE | 14 | 15 | 4 | 18

'NOXA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S272. Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
NOXA1 MUTATED | 3 | 0 | 0
NOXA1 WILD-TYPE | 23 | 11 | 18

'NOXA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S273. Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
NOXA1 MUTATED | 1 | 0 | 0 | 2 | 0
NOXA1 WILD-TYPE | 12 | 18 | 8 | 12 | 2

'NOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S274. Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
NOXA1 MUTATED | 1 | 2 | 0
NOXA1 WILD-TYPE | 20 | 12 | 19

'NOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S275. Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
NOXA1 MUTATED | 3 | 0 | 0
NOXA1 WILD-TYPE | 27 | 16 | 8

'THEM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S276. Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
THEM4 MUTATED | 3 | 0 | 1 | 1
THEM4 WILD-TYPE | 18 | 20 | 9 | 8

'THEM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S277. Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
THEM4 MUTATED | 1 | 1 | 1 | 0 | 1
THEM4 WILD-TYPE | 12 | 7 | 13 | 13 | 6

'THEM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S278. Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
THEM4 MUTATED | 0 | 1
THEM4 WILD-TYPE | 13 | 14

'THEM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S279. Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
THEM4 MUTATED | 1 | 1 | 2 | 0
THEM4 WILD-TYPE | 15 | 7 | 12 | 16

'THEM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S280. Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
THEM4 MUTATED | 2 | 1 | 0 | 1
THEM4 WILD-TYPE | 14 | 15 | 4 | 17

'THEM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S281. Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
THEM4 MUTATED | 2 | 2 | 0
THEM4 WILD-TYPE | 24 | 9 | 18

'THEM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S282. Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
THEM4 MUTATED | 0 | 0 | 1 | 3 | 0
THEM4 WILD-TYPE | 13 | 18 | 7 | 11 | 2

'THEM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S283. Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
THEM4 MUTATED | 3 | 1 | 0
THEM4 WILD-TYPE | 18 | 13 | 19

'THEM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S284. Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
THEM4 MUTATED | 4 | 0 | 0
THEM4 WILD-TYPE | 26 | 16 | 8

'ATXN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S285. Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
ATXN1 MUTATED | 2 | 4 | 3 | 1
ATXN1 WILD-TYPE | 19 | 16 | 7 | 8

'ATXN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S286. Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
ATXN1 MUTATED | 1 | 4 | 2 | 1 | 1
ATXN1 WILD-TYPE | 12 | 4 | 12 | 12 | 6

'ATXN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S287. Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
ATXN1 MUTATED | 1 | 3
ATXN1 WILD-TYPE | 12 | 12

'ATXN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S288. Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
ATXN1 MUTATED | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0
ATXN1 WILD-TYPE | 3 | 5 | 4 | 3 | 3 | 1 | 3 | 2

'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S289. Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
ATXN1 MUTATED | 2 | 3 | 3 | 1
ATXN1 WILD-TYPE | 14 | 5 | 11 | 15

'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S290. Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
ATXN1 MUTATED | 3 | 4 | 0 | 2
ATXN1 WILD-TYPE | 13 | 12 | 4 | 16

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S291. Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
ATXN1 MUTATED | 5 | 3 | 1
ATXN1 WILD-TYPE | 21 | 8 | 17

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S292. Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
ATXN1 MUTATED | 2 | 2 | 2 | 3 | 0
ATXN1 WILD-TYPE | 11 | 16 | 6 | 11 | 2

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S293. Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
ATXN1 MUTATED | 6 | 1 | 2
ATXN1 WILD-TYPE | 15 | 13 | 17

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S294. Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
ATXN1 MUTATED | 7 | 2 | 0
ATXN1 WILD-TYPE | 23 | 14 | 8

'PLIN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S295. Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
PLIN5 MUTATED | 1 | 3 | 0 | 1
PLIN5 WILD-TYPE | 20 | 17 | 10 | 8

'PLIN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S296. Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
PLIN5 MUTATED | 1 | 2 | 1 | 1 | 0
PLIN5 WILD-TYPE | 12 | 6 | 13 | 12 | 7

'PLIN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S297. Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
PLIN5 MUTATED | 1 | 2
PLIN5 WILD-TYPE | 12 | 13

'PLIN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S298. Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
PLIN5 MUTATED | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1
PLIN5 WILD-TYPE | 5 | 5 | 5 | 3 | 2 | 1 | 3 | 1

'PLIN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S299. Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
PLIN5 MUTATED | 1 | 1 | 2 | 1
PLIN5 WILD-TYPE | 15 | 7 | 12 | 15

'PLIN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S300. Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
PLIN5 MUTATED | 1 | 3 | 0 | 1
PLIN5 WILD-TYPE | 15 | 13 | 4 | 17

'PLIN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S301. Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
PLIN5 MUTATED | 1 | 2 | 2
PLIN5 WILD-TYPE | 25 | 9 | 16

'PLIN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S302. Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
PLIN5 MUTATED | 1 | 4 | 0 | 0 | 0
PLIN5 WILD-TYPE | 12 | 14 | 8 | 14 | 2

'PLIN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S303. Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
PLIN5 MUTATED | 1 | 1 | 3
PLIN5 WILD-TYPE | 20 | 13 | 16

'PLIN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S304. Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
PLIN5 MUTATED | 1 | 4 | 0
PLIN5 WILD-TYPE | 29 | 12 | 8

Figure S23. Get High-res Image Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OPRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S305. Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
OPRD1 MUTATED | 5 | 4 | 2 | 1
OPRD1 WILD-TYPE | 16 | 16 | 8 | 8

'OPRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S306. Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
OPRD1 MUTATED | 3 | 1 | 3 | 1 | 3
OPRD1 WILD-TYPE | 10 | 7 | 11 | 12 | 4

'OPRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S307. Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
OPRD1 MUTATED | 2 | 4
OPRD1 WILD-TYPE | 11 | 11

'OPRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S308. Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
OPRD1 MUTATED | 0 | 2 | 1 | 1 | 2 | 0 | 0 | 0
OPRD1 WILD-TYPE | 5 | 4 | 4 | 2 | 1 | 1 | 3 | 2

'OPRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S309. Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
OPRD1 MUTATED | 4 | 2 | 3 | 2
OPRD1 WILD-TYPE | 12 | 6 | 11 | 14

'OPRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S310. Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
OPRD1 MUTATED | 3 | 4 | 1 | 3
OPRD1 WILD-TYPE | 13 | 12 | 3 | 15

'OPRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S311. Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
OPRD1 MUTATED | 5 | 4 | 2
OPRD1 WILD-TYPE | 21 | 7 | 16

'OPRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S312. Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
OPRD1 MUTATED | 1 | 5 | 1 | 4 | 0
OPRD1 WILD-TYPE | 12 | 13 | 7 | 10 | 2

'OPRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S313. Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
OPRD1 MUTATED | 4 | 3 | 4
OPRD1 WILD-TYPE | 17 | 11 | 15

'OPRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S314. Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
OPRD1 MUTATED | 5 | 5 | 1
OPRD1 WILD-TYPE | 25 | 11 | 7

'KRTAP4-5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S315. Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
KRTAP4-5 MUTATED | 2 | 3 | 0 | 0
KRTAP4-5 WILD-TYPE | 19 | 17 | 10 | 9

'KRTAP4-5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S316. Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
KRTAP4-5 MUTATED | 1 | 2 | 0 | 1 | 0
KRTAP4-5 WILD-TYPE | 12 | 6 | 14 | 12 | 7

'KRTAP4-5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S317. Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
KRTAP4-5 MUTATED | 0 | 2
KRTAP4-5 WILD-TYPE | 13 | 13

'KRTAP4-5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S318. Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
KRTAP4-5 MUTATED | 2 | 0 | 1 | 1
KRTAP4-5 WILD-TYPE | 14 | 8 | 13 | 15

'KRTAP4-5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S319. Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
KRTAP4-5 MUTATED | 2 | 1 | 0 | 1
KRTAP4-5 WILD-TYPE | 14 | 15 | 4 | 17

'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S320. Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
KRTAP4-5 MUTATED | 2 | 1 | 1
KRTAP4-5 WILD-TYPE | 24 | 10 | 17

'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S321. Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
KRTAP4-5 MUTATED | 1 | 1 | 0 | 2 | 0
KRTAP4-5 WILD-TYPE | 12 | 17 | 8 | 12 | 2

'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S322. Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
KRTAP4-5 MUTATED | 3 | 0 | 1
KRTAP4-5 WILD-TYPE | 18 | 14 | 18

'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S323. Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
KRTAP4-5 MUTATED | 3 | 1 | 0
KRTAP4-5 WILD-TYPE | 27 | 15 | 8

'C19ORF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S324. Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
C19ORF10 MUTATED | 3 | 2 | 0 | 1
C19ORF10 WILD-TYPE | 18 | 18 | 10 | 8

'C19ORF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S325. Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
C19ORF10 MUTATED | 2 | 1 | 3 | 0 | 0
C19ORF10 WILD-TYPE | 11 | 7 | 11 | 13 | 7

'C19ORF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S326. Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
C19ORF10 MUTATED | 1 | 3
C19ORF10 WILD-TYPE | 12 | 12

'C19ORF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S327. Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
C19ORF10 MUTATED | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 1
C19ORF10 WILD-TYPE | 5 | 4 | 5 | 3 | 2 | 1 | 3 | 1

'C19ORF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S328. Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
C19ORF10 MUTATED | 2 | 2 | 2 | 0
C19ORF10 WILD-TYPE | 14 | 6 | 12 | 16

'C19ORF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S329. Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
C19ORF10 MUTATED | 2 | 4 | 0 | 0
C19ORF10 WILD-TYPE | 14 | 12 | 4 | 18

'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S330. Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
C19ORF10 MUTATED | 3 | 2 | 1
C19ORF10 WILD-TYPE | 23 | 9 | 17

'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S331. Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
C19ORF10 MUTATED | 2 | 2 | 0 | 2 | 0
C19ORF10 WILD-TYPE | 11 | 16 | 8 | 12 | 2

'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S332. Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
C19ORF10 MUTATED | 3 | 2 | 1
C19ORF10 WILD-TYPE | 18 | 12 | 18

'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S333. Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
C19ORF10 MUTATED | 4 | 2 | 0
C19ORF10 WILD-TYPE | 26 | 14 | 8

'AATK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S334. Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
AATK MUTATED | 0 | 4 | 1 | 1
AATK WILD-TYPE | 21 | 16 | 9 | 8

'AATK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S335. Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
AATK MUTATED | 0 | 1 | 2 | 0 | 1
AATK WILD-TYPE | 13 | 7 | 12 | 13 | 6

'AATK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S336. Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
AATK MUTATED | 1 | 1
AATK WILD-TYPE | 12 | 14

'AATK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S337. Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
AATK MUTATED | 0 | 1 | 2 | 1
AATK WILD-TYPE | 16 | 7 | 12 | 15

'AATK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S338. Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
AATK MUTATED | 0 | 3 | 0 | 1
AATK WILD-TYPE | 16 | 13 | 4 | 17

'AATK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S339. Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
AATK MUTATED | 2 | 1 | 1
AATK WILD-TYPE | 24 | 10 | 17

'AATK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S340. Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
AATK MUTATED | 2 | 2 | 0 | 0 | 0
AATK WILD-TYPE | 11 | 16 | 8 | 14 | 2

'AATK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S341. Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
AATK MUTATED | 2 | 1 | 1
AATK WILD-TYPE | 19 | 13 | 18

'AATK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S342. Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
AATK MUTATED | 2 | 2 | 0
AATK WILD-TYPE | 28 | 14 | 8

'SARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S343. Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
SARM1 MUTATED | 3 | 0 | 2 | 1
SARM1 WILD-TYPE | 18 | 20 | 8 | 8

'SARM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S344. Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
SARM1 MUTATED | 0 | 1 | 3 | 1 | 0
SARM1 WILD-TYPE | 13 | 7 | 11 | 12 | 7

'SARM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S345. Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
SARM1 MUTATED | 1 | 3
SARM1 WILD-TYPE | 12 | 12

'SARM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S346. Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
SARM1 MUTATED | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 1
SARM1 WILD-TYPE | 4 | 5 | 5 | 3 | 2 | 1 | 3 | 1

'SARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S347. Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
SARM1 MUTATED | 1 | 1 | 3 | 0
SARM1 WILD-TYPE | 15 | 7 | 11 | 16

'SARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S348. Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
SARM1 MUTATED | 1 | 3 | 1 | 0
SARM1 WILD-TYPE | 15 | 13 | 3 | 18

'SARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S349. Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
SARM1 MUTATED | 1 | 2 | 2
SARM1 WILD-TYPE | 25 | 9 | 16

'SARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S350. Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
SARM1 MUTATED | 2 | 2 | 0 | 1 | 0
SARM1 WILD-TYPE | 11 | 16 | 8 | 13 | 2

'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S351. Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
SARM1 MUTATED | 1 | 1 | 3
SARM1 WILD-TYPE | 20 | 13 | 16

'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.08 (Fisher's exact test), Q value = 1

Table S352. Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
SARM1 MUTATED | 1 | 2 | 2
SARM1 WILD-TYPE | 29 | 14 | 6

'TRIOBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S353. Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
TRIOBP MUTATED | 4 | 4 | 2 | 0
TRIOBP WILD-TYPE | 17 | 16 | 8 | 9

'TRIOBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S354. Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
TRIOBP MUTATED | 3 | 1 | 0 | 3 | 2
TRIOBP WILD-TYPE | 10 | 7 | 14 | 10 | 5

'TRIOBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S355. Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
TRIOBP MUTATED | 2 | 1
TRIOBP WILD-TYPE | 11 | 14

'TRIOBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S356. Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
TRIOBP MUTATED | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 0
TRIOBP WILD-TYPE | 4 | 6 | 5 | 3 | 3 | 1 | 1 | 2

'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S357. Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
TRIOBP MUTATED | 2 | 1 | 2 | 3
TRIOBP WILD-TYPE | 14 | 7 | 12 | 13

'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S358. Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
TRIOBP MUTATED | 3 | 0 | 0 | 5
TRIOBP WILD-TYPE | 13 | 16 | 4 | 13

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S359. Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
TRIOBP MUTATED | 4 | 1 | 4
TRIOBP WILD-TYPE | 22 | 10 | 14

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S360. Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
TRIOBP MUTATED | 2 | 2 | 2 | 3 | 0
TRIOBP WILD-TYPE | 11 | 16 | 6 | 11 | 2

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S361. Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
TRIOBP MUTATED | 4 | 2 | 3
TRIOBP WILD-TYPE | 17 | 12 | 16

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S362. Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
TRIOBP MUTATED | 5 | 2 | 2
TRIOBP WILD-TYPE | 25 | 14 | 6

'ZNF598 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S363. Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
ZNF598 MUTATED | 8 | 2 | 1 | 1
ZNF598 WILD-TYPE | 13 | 18 | 9 | 8

'ZNF598 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S364. Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
ZNF598 MUTATED | 3 | 0 | 2 | 4 | 0
ZNF598 WILD-TYPE | 10 | 8 | 12 | 9 | 7

'ZNF598 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S365. Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
ZNF598 MUTATED | 3 | 3
ZNF598 WILD-TYPE | 10 | 12

'ZNF598 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S366. Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
ZNF598 MUTATED | 1 | 0 | 2 | 1 | 1 | 0 | 1 | 0
ZNF598 WILD-TYPE | 4 | 6 | 3 | 2 | 2 | 1 | 2 | 2

'ZNF598 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S367. Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
ZNF598 MUTATED | 4 | 0 | 3 | 2
ZNF598 WILD-TYPE | 12 | 8 | 11 | 14

'ZNF598 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S368. Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
ZNF598 MUTATED | 3 | 2 | 1 | 3
ZNF598 WILD-TYPE | 13 | 14 | 3 | 15

'ZNF598 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S369. Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
ZNF598 MUTATED | 4 | 2 | 3
ZNF598 WILD-TYPE | 22 | 9 | 15

'ZNF598 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S370. Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
ZNF598 MUTATED | 1 | 3 | 0 | 5 | 0
ZNF598 WILD-TYPE | 12 | 15 | 8 | 9 | 2

'ZNF598 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S371. Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
ZNF598 MUTATED | 3 | 2 | 4
ZNF598 WILD-TYPE | 18 | 12 | 15

'ZNF598 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S372. Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
ZNF598 MUTATED | 5 | 3 | 1
ZNF598 WILD-TYPE | 25 | 13 | 7

'WDR34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S373. Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
WDR34 MUTATED | 3 | 1 | 0 | 1
WDR34 WILD-TYPE | 18 | 19 | 10 | 8

'WDR34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S374. Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
WDR34 MUTATED | 2 | 0 | 1 | 1 | 1
WDR34 WILD-TYPE | 11 | 8 | 13 | 12 | 6

'WDR34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S375. Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
WDR34 MUTATED | 0 | 2
WDR34 WILD-TYPE | 13 | 13

'WDR34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S376. Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
WDR34 MUTATED | 2 | 0 | 1 | 2
WDR34 WILD-TYPE | 14 | 8 | 13 | 14

'WDR34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S377. Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
WDR34 MUTATED | 2 | 2 | 0 | 1
WDR34 WILD-TYPE | 14 | 14 | 4 | 17

'WDR34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S378. Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
WDR34 MUTATED | 3 | 1 | 1
WDR34 WILD-TYPE | 23 | 10 | 17

'WDR34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S379. Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
WDR34 MUTATED | 1 | 1 | 0 | 3 | 0
WDR34 WILD-TYPE | 12 | 17 | 8 | 11 | 2

'WDR34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S380. Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
WDR34 MUTATED | 2 | 2 | 1
WDR34 WILD-TYPE | 19 | 12 | 18

'WDR34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S381. Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
WDR34 MUTATED | 4 | 0 | 1
WDR34 WILD-TYPE | 26 | 16 | 7

'ZNF628 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S382. Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
ZNF628 MUTATED | 5 | 1 | 0 | 1
ZNF628 WILD-TYPE | 16 | 19 | 10 | 8

'ZNF628 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S383. Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
ZNF628 MUTATED | 2 | 1 | 1 | 1 | 0
ZNF628 WILD-TYPE | 11 | 7 | 13 | 12 | 7

'ZNF628 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S384. Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
ZNF628 MUTATED | 1 | 2
ZNF628 WILD-TYPE | 12 | 13

'ZNF628 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S385. Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
ZNF628 MUTATED | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1
ZNF628 WILD-TYPE | 4 | 5 | 5 | 3 | 3 | 1 | 3 | 1

'ZNF628 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S386. Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
ZNF628 MUTATED | 3 | 1 | 1 | 0
ZNF628 WILD-TYPE | 13 | 7 | 13 | 16

'ZNF628 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S387. Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
ZNF628 MUTATED | 3 | 1 | 1 | 0
ZNF628 WILD-TYPE | 13 | 15 | 3 | 18

'ZNF628 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 1

Table S388. Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
ZNF628 MUTATED | 1 | 3 | 1
ZNF628 WILD-TYPE | 25 | 8 | 17

'ZNF628 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S389. Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
ZNF628 MUTATED | 0 | 3 | 0 | 2 | 0
ZNF628 WILD-TYPE | 13 | 15 | 8 | 12 | 2

'ZNF628 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S390. Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
ZNF628 MUTATED | 1 | 3 | 1
ZNF628 WILD-TYPE | 20 | 11 | 18

'ZNF628 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S391. Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
ZNF628 MUTATED | 2 | 2 | 1
ZNF628 WILD-TYPE | 28 | 14 | 7

'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S392. Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
BTBD11 MUTATED | 2 | 2 | 1 | 1
BTBD11 WILD-TYPE | 19 | 18 | 9 | 8

'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S393. Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
BTBD11 MUTATED | 1 | 1 | 1 | 0 | 2
BTBD11 WILD-TYPE | 12 | 7 | 13 | 13 | 5

'BTBD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S394. Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
BTBD11 MUTATED | 0 | 1
BTBD11 WILD-TYPE | 13 | 14

'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S395. Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
BTBD11 MUTATED | 1 | 0 | 3 | 1
BTBD11 WILD-TYPE | 15 | 8 | 11 | 15

'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S396. Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
BTBD11 MUTATED | 1 | 2 | 0 | 2
BTBD11 WILD-TYPE | 15 | 14 | 4 | 16

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S397. Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
BTBD11 MUTATED | 4 | 0 | 1
BTBD11 WILD-TYPE | 22 | 11 | 17

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S398. Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
BTBD11 MUTATED | 2 | 0 | 2 | 1 | 0
BTBD11 WILD-TYPE | 11 | 18 | 6 | 13 | 2

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S399. Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
BTBD11 MUTATED | 3 | 1 | 1
BTBD11 WILD-TYPE | 18 | 13 | 18

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S400. Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
BTBD11 MUTATED | 4 | 0 | 1
BTBD11 WILD-TYPE | 26 | 16 | 7

'IRX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S401. Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
IRX3 MUTATED | 3 | 0 | 2 | 0
IRX3 WILD-TYPE | 18 | 20 | 8 | 9

'IRX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S402. Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
IRX3 MUTATED | 0 | 1 | 2 | 1 | 0
IRX3 WILD-TYPE | 13 | 7 | 12 | 12 | 7

'IRX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S403. Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
IRX3 MUTATED | 0 | 2
IRX3 WILD-TYPE | 13 | 13

'IRX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S404. Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
IRX3 MUTATED | 2 | 1 | 1 | 0
IRX3 WILD-TYPE | 14 | 7 | 13 | 16

'IRX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S405. Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
IRX3 MUTATED | 1 | 2 | 1 | 0
IRX3 WILD-TYPE | 15 | 14 | 3 | 18

'IRX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S406. Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
IRX3 MUTATED | 2 | 2 | 0
IRX3 WILD-TYPE | 24 | 9 | 18

'IRX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S407. Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
IRX3 MUTATED | 2 | 1 | 0 | 1 | 0
IRX3 WILD-TYPE | 11 | 17 | 8 | 13 | 2

'IRX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S408. Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
IRX3 MUTATED | 3 | 1 | 0
IRX3 WILD-TYPE | 18 | 13 | 19

'IRX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S409. Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
IRX3 MUTATED | 3 | 0 | 1
IRX3 WILD-TYPE | 27 | 16 | 7

'FPGS MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S410. Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
FPGS MUTATED | 2 | 2 | 1 | 0
FPGS WILD-TYPE | 19 | 18 | 9 | 9

'FPGS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S411. Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
FPGS MUTATED | 1 | 1 | 1 | 1 | 0
FPGS WILD-TYPE | 12 | 7 | 13 | 12 | 7

'FPGS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S412. Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
FPGS MUTATED | 1 | 2
FPGS WILD-TYPE | 12 | 13

'FPGS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S413. Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
FPGS MUTATED | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0
FPGS WILD-TYPE | 4 | 5 | 5 | 3 | 3 | 0 | 3 | 2

'FPGS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S414. Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
FPGS MUTATED | 1 | 1 | 0 | 2
FPGS WILD-TYPE | 15 | 7 | 14 | 14

'FPGS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S415. Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
FPGS MUTATED | 2 | 0 | 0 | 2
FPGS WILD-TYPE | 14 | 16 | 4 | 16

'FPGS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 1

Table S416. Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
FPGS MUTATED | 0 | 2 | 2
FPGS WILD-TYPE | 26 | 9 | 16

'FPGS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S417. Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
FPGS MUTATED | 0 | 2 | 0 | 2 | 0
FPGS WILD-TYPE | 13 | 16 | 8 | 12 | 2

'FPGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S418. Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
FPGS MUTATED | 1 | 1 | 2
FPGS WILD-TYPE | 20 | 13 | 17

'FPGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S419. Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
FPGS MUTATED | 2 | 2 | 0
FPGS WILD-TYPE | 28 | 14 | 8

'MEN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S420. Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
MEN1 MUTATED | 1 | 1 | 2 | 0
MEN1 WILD-TYPE | 20 | 19 | 8 | 9

'MEN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 1

Table S421. Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
MEN1 MUTATED | 0 | 1 | 4 | 0 | 0
MEN1 WILD-TYPE | 13 | 7 | 10 | 13 | 7

Figure S24. Get High-res Image Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MEN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S422. Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
MEN1 MUTATED | 0 | 2
MEN1 WILD-TYPE | 13 | 13

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 1

Table S423. Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
MEN1 MUTATED | 0 | 1 | 4 | 0
MEN1 WILD-TYPE | 16 | 7 | 10 | 16

Figure S25. Get High-res Image Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00638 (Fisher's exact test), Q value = 1

Table S424. Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
MEN1 MUTATED | 0 | 5 | 0 | 0
MEN1 WILD-TYPE | 16 | 11 | 4 | 18

Figure S26. Get High-res Image Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S425. Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
MEN1 MUTATED | 4 | 1 | 0
MEN1 WILD-TYPE | 22 | 10 | 18

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 1

Table S426. Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
MEN1 MUTATED | 4 | 0 | 0 | 1 | 0
MEN1 WILD-TYPE | 9 | 18 | 8 | 13 | 2

Figure S27. Get High-res Image Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S427. Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
MEN1 MUTATED | 4 | 1 | 0
MEN1 WILD-TYPE | 17 | 13 | 19

'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S428. Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
MEN1 MUTATED | 5 | 0 | 0
MEN1 WILD-TYPE | 25 | 16 | 8

'BHLHE22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S429. Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
BHLHE22 MUTATED | 1 | 2 | 2 | 0
BHLHE22 WILD-TYPE | 20 | 18 | 8 | 9

'BHLHE22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 1

Table S430. Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
BHLHE22 MUTATED | 0 | 3 | 1 | 1 | 0
BHLHE22 WILD-TYPE | 13 | 5 | 13 | 12 | 7

'BHLHE22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S431. Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
BHLHE22 MUTATED | 2 | 2
BHLHE22 WILD-TYPE | 11 | 13

'BHLHE22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S432. Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
BHLHE22 MUTATED | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0
BHLHE22 WILD-TYPE | 3 | 5 | 4 | 3 | 3 | 1 | 3 | 2

'BHLHE22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S433. Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
BHLHE22 MUTATED | 0 | 2 | 2 | 1
BHLHE22 WILD-TYPE | 16 | 6 | 12 | 15

'BHLHE22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S434. Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
BHLHE22 MUTATED | 2 | 2 | 0 | 1
BHLHE22 WILD-TYPE | 14 | 14 | 4 | 17

'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S435. Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
BHLHE22 MUTATED | 2 | 2 | 1
BHLHE22 WILD-TYPE | 24 | 9 | 17

'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S436. Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
BHLHE22 MUTATED | 2 | 2 | 0 | 1 | 0
BHLHE22 WILD-TYPE | 11 | 16 | 8 | 13 | 2

'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S437. Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
BHLHE22 MUTATED | 3 | 1 | 1
BHLHE22 WILD-TYPE | 18 | 13 | 18

'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S438. Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
BHLHE22 MUTATED | 3 | 2 | 0
BHLHE22 WILD-TYPE | 27 | 14 | 8

'DMKN MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S439. Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
DMKN MUTATED | 2 | 1 | 0 | 0
DMKN WILD-TYPE | 19 | 19 | 10 | 9

'DMKN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S440. Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
DMKN MUTATED | 0 | 1 | 2 | 0 | 0
DMKN WILD-TYPE | 13 | 7 | 12 | 13 | 7

'DMKN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S441. Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
DMKN MUTATED | 1 | 0
DMKN WILD-TYPE | 12 | 15

'DMKN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S442. Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
DMKN MUTATED | 1 | 1 | 1 | 0
DMKN WILD-TYPE | 15 | 7 | 13 | 16

'DMKN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S443. Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
DMKN MUTATED | 1 | 2 | 0 | 0
DMKN WILD-TYPE | 15 | 14 | 4 | 18

'DMKN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00644 (Fisher's exact test), Q value = 1

Table S444. Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
DMKN MUTATED | 0 | 3 | 0
DMKN WILD-TYPE | 26 | 8 | 18

Figure S28. Get High-res Image Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DMKN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S445. Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
DMKN MUTATED | 0 | 1 | 0 | 2 | 0
DMKN WILD-TYPE | 13 | 17 | 8 | 12 | 2

'DMKN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S446. Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
DMKN MUTATED | 1 | 2 | 0
DMKN WILD-TYPE | 20 | 12 | 19

'DMKN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S447. Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
DMKN MUTATED | 2 | 1 | 0
DMKN WILD-TYPE | 28 | 15 | 8

'OBSCN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S448. Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
OBSCN MUTATED | 9 | 6 | 1 | 2
OBSCN WILD-TYPE | 12 | 14 | 9 | 7

'OBSCN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S449. Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
OBSCN MUTATED | 4 | 4 | 2 | 4 | 2
OBSCN WILD-TYPE | 9 | 4 | 12 | 9 | 5

'OBSCN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S450. Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
OBSCN MUTATED | 4 | 4
OBSCN WILD-TYPE | 9 | 11

'OBSCN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S451. Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
OBSCN MUTATED | 1 | 2 | 1 | 0 | 2 | 0 | 2 | 0
OBSCN WILD-TYPE | 4 | 4 | 4 | 3 | 1 | 1 | 1 | 2

'OBSCN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S452. Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
OBSCN MUTATED | 6 | 2 | 5 | 3
OBSCN WILD-TYPE | 10 | 6 | 9 | 13

'OBSCN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S453. Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
OBSCN MUTATED | 5 | 4 | 2 | 5
OBSCN WILD-TYPE | 11 | 12 | 2 | 13

'OBSCN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S454. Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
OBSCN MUTATED | 6 | 6 | 4
OBSCN WILD-TYPE | 20 | 5 | 14

'OBSCN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S455. Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
OBSCN MUTATED | 2 | 5 | 3 | 6 | 0
OBSCN WILD-TYPE | 11 | 13 | 5 | 8 | 2

'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S456. Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
OBSCN MUTATED | 6 | 4 | 6
OBSCN WILD-TYPE | 15 | 10 | 13

'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S457. Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
OBSCN MUTATED | 8 | 4 | 4
OBSCN WILD-TYPE | 22 | 12 | 4

'PANK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S458. Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
PANK2 MUTATED | 3 | 1 | 0 | 1
PANK2 WILD-TYPE | 18 | 19 | 10 | 8

'PANK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S459. Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
PANK2 MUTATED | 2 | 0 | 0 | 1 | 0
PANK2 WILD-TYPE | 11 | 8 | 14 | 12 | 7

'PANK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S460. Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
PANK2 MUTATED | 0 | 3
PANK2 WILD-TYPE | 13 | 12

'PANK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S461. Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
PANK2 MUTATED | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0
PANK2 WILD-TYPE | 3 | 6 | 5 | 3 | 2 | 1 | 3 | 2

'PANK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S462. Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
PANK2 MUTATED | 3 | 0 | 0 | 0
PANK2 WILD-TYPE | 13 | 8 | 14 | 16

'PANK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 1

Table S463. Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
PANK2 MUTATED | 2 | 0 | 1 | 0
PANK2 WILD-TYPE | 14 | 16 | 3 | 18

'PANK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S464. Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
PANK2 MUTATED | 2 | 1 | 0
PANK2 WILD-TYPE | 24 | 10 | 18

'PANK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S465. Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
PANK2 MUTATED | 1 | 0 | 0 | 2 | 0
PANK2 WILD-TYPE | 12 | 18 | 8 | 12 | 2

'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S466. Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
PANK2 MUTATED | 1 | 1 | 1
PANK2 WILD-TYPE | 20 | 13 | 18

'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S467. Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
PANK2 MUTATED | 2 | 0 | 1
PANK2 WILD-TYPE | 28 | 16 | 7

'RREB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S468. Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
RREB1 MUTATED | 3 | 1 | 1 | 0
RREB1 WILD-TYPE | 18 | 19 | 9 | 9

'RREB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S469. Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
RREB1 MUTATED | 2 | 0 | 1 | 1 | 0
RREB1 WILD-TYPE | 11 | 8 | 13 | 12 | 7

'RREB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S470. Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
RREB1 MUTATED | 2 | 0
RREB1 WILD-TYPE | 11 | 15

'RREB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S471. Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
RREB1 MUTATED | 1 | 1 | 1 | 0
RREB1 WILD-TYPE | 15 | 7 | 13 | 16

'RREB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S472. Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
RREB1 MUTATED | 1 | 1 | 0 | 1
RREB1 WILD-TYPE | 15 | 15 | 4 | 17

'RREB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S473. Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
RREB1 MUTATED | 1 | 1 | 2
RREB1 WILD-TYPE | 25 | 10 | 16

'RREB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S474. Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
RREB1 MUTATED | 2 | 2 | 0 | 0 | 0
RREB1 WILD-TYPE | 11 | 16 | 8 | 14 | 2

'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S475. Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
RREB1 MUTATED | 0 | 2 | 2
RREB1 WILD-TYPE | 21 | 12 | 17

'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S476. Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
RREB1 MUTATED | 1 | 2 | 1
RREB1 WILD-TYPE | 29 | 14 | 7

'RNF149 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S477. Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
RNF149 MUTATED | 0 | 2 | 1 | 1
RNF149 WILD-TYPE | 21 | 18 | 9 | 8

'RNF149 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S478. Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
RNF149 MUTATED | 0 | 0 | 2 | 0 | 2
RNF149 WILD-TYPE | 13 | 8 | 12 | 13 | 5

Figure S29. Get High-res Image Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF149 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S479. Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
RNF149 MUTATED | 2 | 1
RNF149 WILD-TYPE | 11 | 14

'RNF149 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S480. Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
RNF149 MUTATED | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0
RNF149 WILD-TYPE | 5 | 5 | 4 | 3 | 2 | 1 | 3 | 2

'RNF149 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S481. Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
RNF149 MUTATED | 0 | 1 | 2 | 1
RNF149 WILD-TYPE | 16 | 7 | 12 | 15

'RNF149 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S482. Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
RNF149 MUTATED | 0 | 2 | 0 | 2
RNF149 WILD-TYPE | 16 | 14 | 4 | 16

'RNF149 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S483. Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
RNF149 MUTATED | 1 | 2 | 1
RNF149 WILD-TYPE | 25 | 9 | 17

'RNF149 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S484. Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
RNF149 MUTATED | 0 | 3 | 1 | 0 | 0
RNF149 WILD-TYPE | 13 | 15 | 7 | 14 | 2

'RNF149 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S485. Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
RNF149 MUTATED | 1 | 2 | 1
RNF149 WILD-TYPE | 20 | 12 | 18

'RNF149 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S486. Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
RNF149 MUTATED | 1 | 3 | 0
RNF149 WILD-TYPE | 29 | 13 | 8

'GLTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S487. Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
GLTPD2 MUTATED | 3 | 1 | 1 | 1
GLTPD2 WILD-TYPE | 18 | 19 | 9 | 8

'GLTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S488. Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
GLTPD2 MUTATED | 1 | 0 | 2 | 2 | 1
GLTPD2 WILD-TYPE | 12 | 8 | 12 | 11 | 6

'GLTPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S489. Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
GLTPD2 MUTATED | 0 | 2
GLTPD2 WILD-TYPE | 13 | 13

'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S490. Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
GLTPD2 MUTATED | 2 | 0 | 2 | 2
GLTPD2 WILD-TYPE | 14 | 8 | 12 | 14

'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S491. Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
GLTPD2 MUTATED | 1 | 3 | 1 | 1
GLTPD2 WILD-TYPE | 15 | 13 | 3 | 17

'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S492. Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
GLTPD2 MUTATED | 3 | 2 | 1
GLTPD2 WILD-TYPE | 23 | 9 | 17

'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S493. Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
GLTPD2 MUTATED | 2 | 1 | 0 | 3 | 0
GLTPD2 WILD-TYPE | 11 | 17 | 8 | 11 | 2

'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S494. Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
GLTPD2 MUTATED | 3 | 1 | 2
GLTPD2 WILD-TYPE | 18 | 13 | 17

'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S495. Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
GLTPD2 MUTATED | 4 | 0 | 2
GLTPD2 WILD-TYPE | 26 | 16 | 6

'SNED1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S496. Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
SNED1 MUTATED | 3 | 1 | 0 | 1
SNED1 WILD-TYPE | 18 | 19 | 10 | 8

'SNED1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S497. Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
SNED1 MUTATED | 2 | 2 | 1 | 0 | 0
SNED1 WILD-TYPE | 11 | 6 | 13 | 13 | 7

'SNED1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S498. Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
SNED1 MUTATED | 1 | 0
SNED1 WILD-TYPE | 12 | 15

'SNED1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S499. Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
SNED1 MUTATED | 3 | 1 | 0 | 1
SNED1 WILD-TYPE | 13 | 7 | 14 | 15

'SNED1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S500. Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
SNED1 MUTATED | 3 | 1 | 0 | 1
SNED1 WILD-TYPE | 13 | 15 | 4 | 17

'SNED1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 1

Table S501. Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
SNED1 MUTATED | 1 | 3 | 1
SNED1 WILD-TYPE | 25 | 8 | 17

'SNED1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S502. Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
SNED1 MUTATED | 0 | 2 | 1 | 2 | 0
SNED1 WILD-TYPE | 13 | 16 | 7 | 12 | 2

'SNED1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S503. Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
SNED1 MUTATED | 2 | 1 | 2
SNED1 WILD-TYPE | 19 | 13 | 17

'SNED1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S504. Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
SNED1 MUTATED | 2 | 2 | 1
SNED1 WILD-TYPE | 28 | 14 | 7

'TPO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S505. Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
TPO MUTATED | 7 | 2 | 1 | 2
TPO WILD-TYPE | 14 | 18 | 9 | 7

'TPO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S506. Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
TPO MUTATED | 3 | 3 | 1 | 2 | 0
TPO WILD-TYPE | 10 | 5 | 13 | 11 | 7

'TPO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S507. Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
TPO MUTATED | 0 | 4
TPO WILD-TYPE | 13 | 11

'TPO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S508. Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
TPO MUTATED | 2 | 1 | 0 | 0 | 1 | 0 | 0 | 0
TPO WILD-TYPE | 3 | 5 | 5 | 3 | 2 | 1 | 3 | 2

'TPO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S509. Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
TPO MUTATED | 5 | 2 | 1 | 1
TPO WILD-TYPE | 11 | 6 | 13 | 15

'TPO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S510. Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
TPO MUTATED | 4 | 2 | 2 | 1
TPO WILD-TYPE | 12 | 14 | 2 | 17

'TPO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0981 (Fisher's exact test), Q value = 1

Table S511. Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
TPO MUTATED | 4 | 4 | 1
TPO WILD-TYPE | 22 | 7 | 17

'TPO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S512. Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
TPO MUTATED | 1 | 2 | 1 | 5 | 0
TPO WILD-TYPE | 12 | 16 | 7 | 9 | 2

'TPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S513. Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
TPO MUTATED | 4 | 2 | 3
TPO WILD-TYPE | 17 | 12 | 16

'TPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S514. Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
TPO MUTATED | 5 | 1 | 3
TPO WILD-TYPE | 25 | 15 | 5

'PTPLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S515. Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
PTPLA MUTATED | 2 | 0 | 1 | 1
PTPLA WILD-TYPE | 19 | 20 | 9 | 8

'PTPLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S516. Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
PTPLA MUTATED | 0 | 1 | 2 | 0 | 0
PTPLA WILD-TYPE | 13 | 7 | 12 | 13 | 7

'PTPLA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S517. Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
PTPLA MUTATED | 0 | 1
PTPLA WILD-TYPE | 13 | 14

'PTPLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S518. Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
PTPLA MUTATED | 1 | 0 | 2 | 0
PTPLA WILD-TYPE | 15 | 8 | 12 | 16

'PTPLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S519. Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
PTPLA MUTATED | 1 | 2 | 0 | 0
PTPLA WILD-TYPE | 15 | 14 | 4 | 18

'PTPLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S520. Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
PTPLA MUTATED | 1 | 1 | 1
PTPLA WILD-TYPE | 25 | 10 | 17

'PTPLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S521. Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
PTPLA MUTATED | 1 | 1 | 0 | 1 | 0
PTPLA WILD-TYPE | 12 | 17 | 8 | 13 | 2

'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S522. Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
PTPLA MUTATED | 2 | 0 | 1
PTPLA WILD-TYPE | 19 | 14 | 18

'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S523. Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
PTPLA MUTATED | 2 | 1 | 0
PTPLA WILD-TYPE | 28 | 15 | 8

'PRSS27 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S524. Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
PRSS27 MUTATED | 1 | 1 | 1 | 0
PRSS27 WILD-TYPE | 20 | 19 | 9 | 9

'PRSS27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S525. Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
PRSS27 MUTATED | 0 | 1 | 1 | 1 | 0
PRSS27 WILD-TYPE | 13 | 7 | 13 | 12 | 7

'PRSS27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S526. Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
PRSS27 MUTATED | 0 | 1
PRSS27 WILD-TYPE | 13 | 14

'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S527. Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
PRSS27 MUTATED | 1 | 1 | 1 | 0
PRSS27 WILD-TYPE | 15 | 7 | 13 | 16

'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0502 (Fisher's exact test), Q value = 1

Table S528. Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
PRSS27 MUTATED | 0 | 2 | 1 | 0
PRSS27 WILD-TYPE | 16 | 14 | 3 | 18

'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S529. Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
PRSS27 MUTATED | 1 | 2 | 0
PRSS27 WILD-TYPE | 25 | 9 | 18

'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S530. Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
PRSS27 MUTATED | 1 | 1 | 0 | 1 | 0
PRSS27 WILD-TYPE | 12 | 17 | 8 | 13 | 2

'PRSS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S531. Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
PRSS27 MUTATED | 1 | 0 | 2
PRSS27 WILD-TYPE | 20 | 14 | 17

'PRSS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S532. Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
PRSS27 MUTATED | 1 | 1 | 1
PRSS27 WILD-TYPE | 29 | 15 | 7

'CD320 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S533. Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
CD320 MUTATED | 2 | 1 | 1 | 0
CD320 WILD-TYPE | 19 | 19 | 9 | 9

'CD320 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S534. Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
CD320 MUTATED | 1 | 0 | 1 | 2 | 0
CD320 WILD-TYPE | 12 | 8 | 13 | 11 | 7

'CD320 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S535. Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
CD320 MUTATED | 1 | 1
CD320 WILD-TYPE | 12 | 14

'CD320 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S536. Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
CD320 MUTATED | 1 | 0 | 2 | 1
CD320 WILD-TYPE | 15 | 8 | 12 | 15

'CD320 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S537. Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
CD320 MUTATED | 1 | 1 | 1 | 1
CD320 WILD-TYPE | 15 | 15 | 3 | 17

'CD320 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S538. Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
CD320 MUTATED | 3 | 1 | 0
CD320 WILD-TYPE | 23 | 10 | 18

'CD320 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S539. Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
CD320 MUTATED | 1 | 0 | 2 | 1 | 0
CD320 WILD-TYPE | 12 | 18 | 6 | 13 | 2

'CD320 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S540. Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
CD320 MUTATED | 3 | 1 | 0
CD320 WILD-TYPE | 18 | 13 | 19

'CD320 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S541. Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
CD320 MUTATED | 4 | 0 | 0
CD320 WILD-TYPE | 26 | 16 | 8

'SEMA5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S542. Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
SEMA5B MUTATED | 5 | 2 | 0 | 1
SEMA5B WILD-TYPE | 16 | 18 | 10 | 8

'SEMA5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S543. Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
SEMA5B MUTATED | 2 | 1 | 0 | 3 | 0
SEMA5B WILD-TYPE | 11 | 7 | 14 | 10 | 7

'SEMA5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S544. Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
SEMA5B MUTATED | 3 | 1
SEMA5B WILD-TYPE | 10 | 14

'SEMA5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S545. Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
SEMA5B MUTATED | 2 | 0 | 1 | 0 | 0 | 1 | 0 | 0
SEMA5B WILD-TYPE | 3 | 6 | 4 | 3 | 3 | 0 | 3 | 2

'SEMA5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S546. Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
SEMA5B MUTATED | 3 | 1 | 0 | 2
SEMA5B WILD-TYPE | 13 | 7 | 14 | 14

'SEMA5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S547. Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
SEMA5B MUTATED | 3 | 0 | 1 | 2
SEMA5B WILD-TYPE | 13 | 16 | 3 | 16

'SEMA5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S548. Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
SEMA5B MUTATED | 2 | 2 | 2
SEMA5B WILD-TYPE | 24 | 9 | 16

'SEMA5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S549. Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
SEMA5B MUTATED | 0 | 4 | 0 | 2 | 0
SEMA5B WILD-TYPE | 13 | 14 | 8 | 12 | 2

'SEMA5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S550. Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
SEMA5B MUTATED | 1 | 3 | 2
SEMA5B WILD-TYPE | 20 | 11 | 17

'SEMA5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S551. Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
SEMA5B MUTATED | 2 | 3 | 1
SEMA5B WILD-TYPE | 28 | 13 | 7

'CCDC150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S552. Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
CCDC150 MUTATED | 2 | 0 | 2 | 0
CCDC150 WILD-TYPE | 19 | 20 | 8 | 9

'CCDC150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S553. Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
CCDC150 MUTATED | 2 | 0 | 1 | 1 | 0
CCDC150 WILD-TYPE | 11 | 8 | 13 | 12 | 7

'CCDC150 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S554. Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
CCDC150 MUTATED | 0 | 3
CCDC150 WILD-TYPE | 13 | 12

'CCDC150 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S555. Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
CCDC150 MUTATED | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0
CCDC150 WILD-TYPE | 5 | 5 | 5 | 2 | 2 | 1 | 3 | 2

'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S556. Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
CCDC150 MUTATED | 3 | 0 | 1 | 0
CCDC150 WILD-TYPE | 13 | 8 | 13 | 16

'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S557. Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
CCDC150 MUTATED | 2 | 1 | 1 | 0
CCDC150 WILD-TYPE | 14 | 15 | 3 | 18

'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S558. Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
CCDC150 MUTATED | 3 | 1 | 0
CCDC150 WILD-TYPE | 23 | 10 | 18

'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S559. Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
CCDC150 MUTATED | 1 | 0 | 0 | 3 | 0
CCDC150 WILD-TYPE | 12 | 18 | 8 | 11 | 2

'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S560. Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
CCDC150 MUTATED | 2 | 1 | 1
CCDC150 WILD-TYPE | 19 | 13 | 18

'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S561. Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
CCDC150 MUTATED | 3 | 0 | 1
CCDC150 WILD-TYPE | 27 | 16 | 7

'TAF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S562. Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
TAF5 MUTATED | 2 | 1 | 1 | 0
TAF5 WILD-TYPE | 19 | 19 | 9 | 9

'TAF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S563. Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
TAF5 MUTATED | 1 | 1 | 1 | 0 | 1
TAF5 WILD-TYPE | 12 | 7 | 13 | 13 | 6

'TAF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S564. Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
TAF5 MUTATED | 2 | 1
TAF5 WILD-TYPE | 11 | 14

'TAF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S565. Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
TAF5 MUTATED | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0
TAF5 WILD-TYPE | 4 | 5 | 5 | 3 | 2 | 1 | 3 | 2

'TAF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S566. Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
TAF5 MUTATED | 1 | 1 | 1 | 1
TAF5 WILD-TYPE | 15 | 7 | 13 | 15

'TAF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S567. Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
TAF5 MUTATED | 2 | 1 | 0 | 1
TAF5 WILD-TYPE | 14 | 15 | 4 | 17

'TAF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 1

Table S568. Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
TAF5 MUTATED | 0 | 3 | 1
TAF5 WILD-TYPE | 26 | 8 | 17

Figure S30. Get High-res Image Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TAF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S569. Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
TAF5 MUTATED | 0 | 4 | 0 | 0 | 0
TAF5 WILD-TYPE | 13 | 14 | 8 | 14 | 2

'TAF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 1

Table S570. Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
TAF5 MUTATED | 0 | 3 | 1
TAF5 WILD-TYPE | 21 | 11 | 18

'TAF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 1

Table S571. Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
TAF5 MUTATED | 0 | 4 | 0
TAF5 WILD-TYPE | 30 | 12 | 8

Figure S31. Get High-res Image Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GARS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 1

Table S572. Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
GARS MUTATED | 5 | 4 | 4 | 6
GARS WILD-TYPE | 16 | 16 | 6 | 3

'GARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0913 (Fisher's exact test), Q value = 1

Table S573. Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
GARS MUTATED | 2 | 0 | 4 | 5 | 4
GARS WILD-TYPE | 11 | 8 | 10 | 8 | 3

'GARS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S574. Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
GARS MUTATED | 6 | 3
GARS WILD-TYPE | 7 | 12

'GARS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S575. Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
GARS MUTATED | 2 | 1 | 4 | 1 | 0 | 0 | 1 | 0
GARS WILD-TYPE | 3 | 5 | 1 | 2 | 3 | 1 | 2 | 2

'GARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S576. Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
GARS MUTATED | 3 | 1 | 4 | 7
GARS WILD-TYPE | 13 | 7 | 10 | 9

'GARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S577. Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
GARS MUTATED | 2 | 3 | 2 | 8
GARS WILD-TYPE | 14 | 13 | 2 | 10

'GARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S578. Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
GARS MUTATED | 6 | 1 | 8
GARS WILD-TYPE | 20 | 10 | 10

'GARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S579. Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
GARS MUTATED | 3 | 6 | 4 | 2 | 0
GARS WILD-TYPE | 10 | 12 | 4 | 12 | 2

'GARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S580. Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
GARS MUTATED | 5 | 2 | 8
GARS WILD-TYPE | 16 | 12 | 11

'GARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S581. Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
GARS MUTATED | 6 | 6 | 3
GARS WILD-TYPE | 24 | 10 | 5

'MUC5B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S582. Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
MUC5B MUTATED | 8 | 7 | 3 | 3
MUC5B WILD-TYPE | 13 | 13 | 7 | 6

'MUC5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S583. Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
MUC5B MUTATED | 3 | 3 | 6 | 4 | 4
MUC5B WILD-TYPE | 10 | 5 | 8 | 9 | 3

'MUC5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S584. Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
MUC5B MUTATED | 5 | 6
MUC5B WILD-TYPE | 8 | 9

'MUC5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S585. Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
MUC5B MUTATED | 2 | 2 | 2 | 0 | 2 | 0 | 2 | 1
MUC5B WILD-TYPE | 3 | 4 | 3 | 3 | 1 | 1 | 1 | 1

'MUC5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S586. Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
MUC5B MUTATED | 5 | 3 | 7 | 5
MUC5B WILD-TYPE | 11 | 5 | 7 | 11

'MUC5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S587. Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
MUC5B MUTATED | 4 | 7 | 2 | 7
MUC5B WILD-TYPE | 12 | 9 | 2 | 11

'MUC5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S588. Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
MUC5B MUTATED | 8 | 5 | 7
MUC5B WILD-TYPE | 18 | 6 | 11

'MUC5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S589. Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
MUC5B MUTATED | 3 | 7 | 4 | 6 | 0
MUC5B WILD-TYPE | 10 | 11 | 4 | 8 | 2

'MUC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S590. Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
MUC5B MUTATED | 7 | 5 | 7
MUC5B WILD-TYPE | 14 | 9 | 12

'MUC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S591. Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
MUC5B MUTATED | 9 | 6 | 4
MUC5B WILD-TYPE | 21 | 10 | 4

'KIAA1984 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S592. Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
KIAA1984 MUTATED | 2 | 0 | 1 | 1
KIAA1984 WILD-TYPE | 19 | 20 | 9 | 8

'KIAA1984 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S593. Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
KIAA1984 MUTATED | 0 | 1 | 2 | 1 | 0
KIAA1984 WILD-TYPE | 13 | 7 | 12 | 12 | 7

'KIAA1984 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S594. Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
KIAA1984 MUTATED | 0 | 3
KIAA1984 WILD-TYPE | 13 | 12

'KIAA1984 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S595. Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
KIAA1984 MUTATED | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0
KIAA1984 WILD-TYPE | 5 | 4 | 5 | 3 | 2 | 1 | 3 | 2

'KIAA1984 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S596. Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
KIAA1984 MUTATED | 1 | 0 | 3 | 0
KIAA1984 WILD-TYPE | 15 | 8 | 11 | 16

'KIAA1984 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 1

Table S597. Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
KIAA1984 MUTATED | 0 | 3 | 1 | 0
KIAA1984 WILD-TYPE | 16 | 13 | 3 | 18

Figure S32. Get High-res Image Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 1

Table S598. Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
KIAA1984 MUTATED | 1 | 3 | 0
KIAA1984 WILD-TYPE | 25 | 8 | 18

Figure S33. Get High-res Image Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S599. Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
KIAA1984 MUTATED | 0 | 1 | 1 | 2 | 0
KIAA1984 WILD-TYPE | 13 | 17 | 7 | 12 | 2

'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S600. Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
KIAA1984 MUTATED | 1 | 2 | 1
KIAA1984 WILD-TYPE | 20 | 12 | 18

'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S601. Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
KIAA1984 MUTATED | 2 | 1 | 1
KIAA1984 WILD-TYPE | 28 | 15 | 7

'SRPX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S602. Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
SRPX MUTATED | 1 | 2 | 0 | 0
SRPX WILD-TYPE | 20 | 18 | 10 | 9

'SRPX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S603. Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
SRPX MUTATED | 0 | 2 | 0 | 1 | 0
SRPX WILD-TYPE | 13 | 6 | 14 | 12 | 7

'SRPX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S604. Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
SRPX MUTATED | 1 | 1
SRPX WILD-TYPE | 12 | 14

'SRPX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S605. Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
SRPX MUTATED | 0 | 1 | 1 | 1
SRPX WILD-TYPE | 16 | 7 | 13 | 15

'SRPX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S606. Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
SRPX MUTATED | 1 | 1 | 0 | 1
SRPX WILD-TYPE | 15 | 15 | 4 | 17

'SRPX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S607. Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
SRPX MUTATED | 1 | 1 | 1
SRPX WILD-TYPE | 25 | 10 | 17

'SRPX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S608. Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
SRPX MUTATED | 1 | 2 | 0 | 0 | 0
SRPX WILD-TYPE | 12 | 16 | 8 | 14 | 2

'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S609. Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
SRPX MUTATED | 1 | 1 | 1
SRPX WILD-TYPE | 20 | 13 | 18

'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S610. Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
SRPX MUTATED | 1 | 2 | 0
SRPX WILD-TYPE | 29 | 14 | 8

'TNIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S611. Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
TNIP2 MUTATED | 3 | 1 | 0 | 1
TNIP2 WILD-TYPE | 18 | 19 | 10 | 8

'TNIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S612. Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
TNIP2 MUTATED | 1 | 1 | 2 | 0 | 0
TNIP2 WILD-TYPE | 12 | 7 | 12 | 13 | 7

'TNIP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S613. Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
TNIP2 MUTATED | 0 | 1
TNIP2 WILD-TYPE | 13 | 14

'TNIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S614. Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
TNIP2 MUTATED | 1 | 0 | 2 | 1
TNIP2 WILD-TYPE | 15 | 8 | 12 | 15

'TNIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S615. Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
TNIP2 MUTATED | 1 | 2 | 0 | 1
TNIP2 WILD-TYPE | 15 | 14 | 4 | 17

'TNIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S616. Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
TNIP2 MUTATED | 2 | 1 | 1
TNIP2 WILD-TYPE | 24 | 10 | 17

'TNIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S617. Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
TNIP2 MUTATED | 1 | 0 | 1 | 2 | 0
TNIP2 WILD-TYPE | 12 | 18 | 7 | 12 | 2

'TNIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S618. Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
TNIP2 MUTATED | 2 | 1 | 1
TNIP2 WILD-TYPE | 19 | 13 | 18

'TNIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S619. Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
TNIP2 MUTATED | 3 | 0 | 1
TNIP2 WILD-TYPE | 27 | 16 | 7

'IDUA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S620. Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
IDUA MUTATED | 5 | 1 | 1 | 1
IDUA WILD-TYPE | 16 | 19 | 9 | 8

'IDUA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S621. Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
IDUA MUTATED | 2 | 1 | 3 | 1 | 0
IDUA WILD-TYPE | 11 | 7 | 11 | 12 | 7

'IDUA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S622. Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
IDUA MUTATED | 2 | 2
IDUA WILD-TYPE | 11 | 13

'IDUA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S623. Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
IDUA MUTATED | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0
IDUA WILD-TYPE | 4 | 6 | 4 | 2 | 2 | 1 | 3 | 2

'IDUA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S624. Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
IDUA MUTATED | 3 | 2 | 1 | 1
IDUA WILD-TYPE | 13 | 6 | 13 | 15

'IDUA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S625. Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
IDUA MUTATED | 3 | 3 | 0 | 1
IDUA WILD-TYPE | 13 | 13 | 4 | 17

'IDUA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S626. Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
IDUA MUTATED | 3 | 3 | 1
IDUA WILD-TYPE | 23 | 8 | 17

'IDUA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S627. Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
IDUA MUTATED | 1 | 2 | 0 | 4 | 0
IDUA WILD-TYPE | 12 | 16 | 8 | 10 | 2

'IDUA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S628. Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
IDUA MUTATED | 4 | 2 | 1
IDUA WILD-TYPE | 17 | 12 | 18

'IDUA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S629. Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
IDUA MUTATED | 5 | 2 | 0
IDUA WILD-TYPE | 25 | 14 | 8

'RNF39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S630. Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
RNF39 MUTATED | 3 | 1 | 1 | 0
RNF39 WILD-TYPE | 18 | 19 | 9 | 9

'RNF39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S631. Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
RNF39 MUTATED | 1 | 2 | 2 | 0 | 0
RNF39 WILD-TYPE | 12 | 6 | 12 | 13 | 7

'RNF39 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S632. Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
RNF39 MUTATED | 1 | 3
RNF39 WILD-TYPE | 12 | 12

'RNF39 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S633. Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
RNF39 MUTATED | 1 | 2 | 0 | 1 | 0 | 0 | 0 | 0
RNF39 WILD-TYPE | 4 | 4 | 5 | 2 | 3 | 1 | 3 | 2

'RNF39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S634. Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
RNF39 MUTATED | 1 | 1 | 3 | 0
RNF39 WILD-TYPE | 15 | 7 | 11 | 16

'RNF39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S635. Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
RNF39 MUTATED | 2 | 3 | 0 | 0
RNF39 WILD-TYPE | 14 | 13 | 4 | 18

'RNF39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S636. Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
RNF39 MUTATED | 3 | 2 | 0
RNF39 WILD-TYPE | 23 | 9 | 18

'RNF39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S637. Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
RNF39 MUTATED | 2 | 1 | 0 | 2 | 0
RNF39 WILD-TYPE | 11 | 17 | 8 | 12 | 2

'RNF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S638. Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
RNF39 MUTATED | 3 | 2 | 0
RNF39 WILD-TYPE | 18 | 12 | 19

'RNF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S639. Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
RNF39 MUTATED | 4 | 1 | 0
RNF39 WILD-TYPE | 26 | 15 | 8

'PABPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S640. Gene #67: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
PABPC1 MUTATED | 1 | 1 | 2 | 0
PABPC1 WILD-TYPE | 20 | 19 | 8 | 9

'PABPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S641. Gene #67: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
PABPC1 MUTATED | 1 | 0
PABPC1 WILD-TYPE | 12 | 15

'SCRT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S642. Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
SCRT1 MUTATED | 2 | 1 | 0 | 0
SCRT1 WILD-TYPE | 19 | 19 | 10 | 9

'SCRT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S643. Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
SCRT1 MUTATED | 2 | 0 | 0 | 1 | 0
SCRT1 WILD-TYPE | 11 | 8 | 14 | 12 | 7

'SCRT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S644. Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
SCRT1 MUTATED | 1 | 0
SCRT1 WILD-TYPE | 12 | 15

'SCRT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S645. Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
SCRT1 MUTATED | 2 | 0 | 1 | 0
SCRT1 WILD-TYPE | 14 | 8 | 13 | 16

'SCRT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S646. Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
SCRT1 MUTATED | 2 | 0 | 0 | 1
SCRT1 WILD-TYPE | 14 | 16 | 4 | 17

'SCRT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S647. Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
SCRT1 MUTATED | 2 | 1 | 0
SCRT1 WILD-TYPE | 24 | 10 | 18

'SCRT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S648. Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
SCRT1 MUTATED | 0 | 1 | 1 | 1 | 0
SCRT1 WILD-TYPE | 13 | 17 | 7 | 13 | 2

'SCRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S649. Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
SCRT1 MUTATED | 2 | 1 | 0
SCRT1 WILD-TYPE | 19 | 13 | 19

'SCRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S650. Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
SCRT1 MUTATED | 2 | 1 | 0
SCRT1 WILD-TYPE | 28 | 15 | 8

'MAP1S MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S651. Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
MAP1S MUTATED | 0 | 2 | 1 | 2
MAP1S WILD-TYPE | 21 | 18 | 9 | 7

'MAP1S MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S652. Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
MAP1S MUTATED | 1 | 1 | 0 | 3 | 0
MAP1S WILD-TYPE | 12 | 7 | 14 | 10 | 7

'MAP1S MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S653. Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
MAP1S MUTATED | 2 | 2
MAP1S WILD-TYPE | 11 | 13

'MAP1S MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S654. Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
MAP1S MUTATED | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0
MAP1S WILD-TYPE | 3 | 6 | 3 | 3 | 3 | 1 | 3 | 2

'MAP1S MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S655. Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
MAP1S MUTATED | 1 | 1 | 0 | 3
MAP1S WILD-TYPE | 15 | 7 | 14 | 13

'MAP1S MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S656. Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
MAP1S MUTATED | 2 | 1 | 0 | 2
MAP1S WILD-TYPE | 14 | 15 | 4 | 16

'MAP1S MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S657. Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
MAP1S MUTATED | 2 | 1 | 2
MAP1S WILD-TYPE | 24 | 10 | 16

'MAP1S MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S658. Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
MAP1S MUTATED | 2 | 2 | 0 | 1 | 0
MAP1S WILD-TYPE | 11 | 16 | 8 | 13 | 2

'MAP1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S659. Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
MAP1S MUTATED | 3 | 0 | 2
MAP1S WILD-TYPE | 18 | 14 | 17

'MAP1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S660. Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
MAP1S MUTATED | 3 | 2 | 0
MAP1S WILD-TYPE | 27 | 14 | 8

'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S661. Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
NF1 MUTATED | 4 | 1 | 0 | 2
NF1 WILD-TYPE | 17 | 19 | 10 | 7

'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S662. Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
NF1 MUTATED | 2 | 0 | 2 | 2 | 1
NF1 WILD-TYPE | 11 | 8 | 12 | 11 | 6

'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S663. Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
NF1 MUTATED | 0 | 4
NF1 WILD-TYPE | 13 | 11

'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S664. Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
NF1 MUTATED | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 1
NF1 WILD-TYPE | 4 | 6 | 5 | 2 | 2 | 1 | 3 | 1

'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S665. Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
NF1 MUTATED | 4 | 0 | 2 | 1
NF1 WILD-TYPE | 12 | 8 | 12 | 15

'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S666. Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
NF1 MUTATED | 2 | 2 | 2 | 1
NF1 WILD-TYPE | 14 | 14 | 2 | 17

'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S667. Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
NF1 MUTATED | 2 | 3 | 2
NF1 WILD-TYPE | 24 | 8 | 16

'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S668. Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
NF1 MUTATED | 1 | 2 | 1 | 3 | 0
NF1 WILD-TYPE | 12 | 16 | 7 | 11 | 2

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S669. Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
NF1 MUTATED | 3 | 2 | 2
NF1 WILD-TYPE | 18 | 12 | 17

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0976 (Fisher's exact test), Q value = 1

Table S670. Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
NF1 MUTATED | 3 | 1 | 3
NF1 WILD-TYPE | 27 | 15 | 5

'AKAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S671. Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
AKAP2 MUTATED | 1 | 0 | 1 | 2
AKAP2 WILD-TYPE | 20 | 20 | 9 | 7

'AKAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S672. Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
AKAP2 MUTATED | 0 | 0 | 2 | 2 | 0
AKAP2 WILD-TYPE | 13 | 8 | 12 | 11 | 7

'AKAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S673. Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
AKAP2 MUTATED | 1 | 2
AKAP2 WILD-TYPE | 12 | 13

'AKAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S674. Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
AKAP2 MUTATED | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 1
AKAP2 WILD-TYPE | 5 | 5 | 4 | 3 | 3 | 1 | 3 | 1

'AKAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S675. Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
AKAP2 MUTATED | 1 | 0 | 2 | 1
AKAP2 WILD-TYPE | 15 | 8 | 12 | 15

'AKAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S676. Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
AKAP2 MUTATED | 0 | 2 | 1 | 1
AKAP2 WILD-TYPE | 16 | 14 | 3 | 17

'AKAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S677. Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
AKAP2 MUTATED | 1 | 1 | 2
AKAP2 WILD-TYPE | 25 | 10 | 16

'AKAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S678. Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
AKAP2 MUTATED | 1 | 3 | 0 | 0 | 0
AKAP2 WILD-TYPE | 12 | 15 | 8 | 14 | 2

'AKAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S679. Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
AKAP2 MUTATED | 1 | 1 | 2
AKAP2 WILD-TYPE | 20 | 13 | 17

'AKAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S680. Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
AKAP2 MUTATED | 1 | 2 | 1
AKAP2 WILD-TYPE | 29 | 14 | 7

'NOTCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S681. Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
NOTCH2 MUTATED | 4 | 1 | 0 | 0
NOTCH2 WILD-TYPE | 17 | 19 | 10 | 9

'NOTCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S682. Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
NOTCH2 MUTATED | 1 | 0 | 2 | 1 | 0
NOTCH2 WILD-TYPE | 12 | 8 | 12 | 12 | 7

'NOTCH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S683. Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
NOTCH2 MUTATED | 1 | 1
NOTCH2 WILD-TYPE | 12 | 14

'NOTCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S684. Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
NOTCH2 MUTATED | 2 | 1 | 1 | 0
NOTCH2 WILD-TYPE | 14 | 7 | 13 | 16

'NOTCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S685. Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
NOTCH2 MUTATED | 1 | 2 | 1 | 0
NOTCH2 WILD-TYPE | 15 | 14 | 3 | 18

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 1

Table S686. Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
NOTCH2 MUTATED | 1 | 3 | 0
NOTCH2 WILD-TYPE | 25 | 8 | 18

Figure S34. Get High-res Image Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S687. Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
NOTCH2 MUTATED | 0 | 1 | 0 | 3 | 0
NOTCH2 WILD-TYPE | 13 | 17 | 8 | 11 | 2

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S688. Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
NOTCH2 MUTATED | 1 | 2 | 1
NOTCH2 WILD-TYPE | 20 | 12 | 18

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S689. Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
NOTCH2 MUTATED | 2 | 1 | 1
NOTCH2 WILD-TYPE | 28 | 15 | 7

'FANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S690. Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
FANK1 MUTATED | 2 | 1 | 1 | 0
FANK1 WILD-TYPE | 19 | 19 | 9 | 9

'FANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S691. Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
FANK1 MUTATED | 0 | 1 | 0 | 1 | 1
FANK1 WILD-TYPE | 13 | 7 | 14 | 12 | 6

'FANK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S692. Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
FANK1 MUTATED | 0 | 1
FANK1 WILD-TYPE | 13 | 14

'FANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S693. Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
FANK1 MUTATED | 1 | 1 | 0 | 1
FANK1 WILD-TYPE | 15 | 7 | 14 | 15

'FANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S694. Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
FANK1 MUTATED | 1 | 0 | 1 | 1
FANK1 WILD-TYPE | 15 | 16 | 3 | 17

'FANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S695. Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
FANK1 MUTATED | 1 | 1 | 1
FANK1 WILD-TYPE | 25 | 10 | 17

'FANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S696. Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
FANK1 MUTATED | 0 | 0 | 1 | 2 | 0
FANK1 WILD-TYPE | 13 | 18 | 7 | 12 | 2

'FANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S697. Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
FANK1 MUTATED | 2 | 0 | 1
FANK1 WILD-TYPE | 19 | 14 | 18

'FANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S698. Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
FANK1 MUTATED | 2 | 0 | 1
FANK1 WILD-TYPE | 28 | 16 | 7

'NEFH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 1

Table S699. Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
NEFH MUTATED | 5 | 0 | 1 | 0
NEFH WILD-TYPE | 16 | 20 | 9 | 9

'NEFH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S700. Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
NEFH MUTATED | 3 | 0 | 0 | 1 | 0
NEFH WILD-TYPE | 10 | 8 | 14 | 12 | 7

'NEFH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S701. Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
NEFH MUTATED | 0 | 2
NEFH WILD-TYPE | 13 | 13

'NEFH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S702. Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
NEFH MUTATED | 3 | 0 | 0 | 0
NEFH WILD-TYPE | 13 | 8 | 14 | 16

'NEFH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0503 (Fisher's exact test), Q value = 1

Table S703. Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
NEFH MUTATED | 2 | 0 | 1 | 0
NEFH WILD-TYPE | 14 | 16 | 3 | 18

'NEFH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S704. Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
NEFH MUTATED | 3 | 1 | 0
NEFH WILD-TYPE | 23 | 10 | 18

'NEFH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S705. Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
NEFH MUTATED | 1 | 0 | 0 | 3 | 0
NEFH WILD-TYPE | 12 | 18 | 8 | 11 | 2

'NEFH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S706. Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
NEFH MUTATED | 1 | 2 | 1
NEFH WILD-TYPE | 20 | 12 | 18

'NEFH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S707. Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
NEFH MUTATED | 3 | 0 | 1
NEFH WILD-TYPE | 27 | 16 | 7

'NPTX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S708. Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
NPTX1 MUTATED | 1 | 1 | 0 | 1
NPTX1 WILD-TYPE | 20 | 19 | 10 | 8

'NPTX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S709. Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
NPTX1 MUTATED | 1 | 0 | 1 | 1 | 0
NPTX1 WILD-TYPE | 12 | 8 | 13 | 12 | 7

'NPTX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S710. Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
NPTX1 MUTATED | 1 | 0
NPTX1 WILD-TYPE | 12 | 15

'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S711. Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
NPTX1 MUTATED | 1 | 0 | 1 | 1
NPTX1 WILD-TYPE | 15 | 8 | 13 | 15

'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S712. Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
NPTX1 MUTATED | 1 | 0 | 0 | 2
NPTX1 WILD-TYPE | 15 | 16 | 4 | 16

'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S713. Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
NPTX1 MUTATED | 1 | 0 | 2
NPTX1 WILD-TYPE | 25 | 11 | 16

'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S714. Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
NPTX1 MUTATED | 0 | 1 | 1 | 1 | 0
NPTX1 WILD-TYPE | 13 | 17 | 7 | 13 | 2

'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S715. Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
NPTX1 MUTATED | 0 | 1 | 2
NPTX1 WILD-TYPE | 21 | 13 | 17

'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S716. Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
NPTX1 MUTATED | 1 | 1 | 1
NPTX1 WILD-TYPE | 29 | 15 | 7

'KBTBD13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S717. Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
KBTBD13 MUTATED | 5 | 3 | 0 | 1
KBTBD13 WILD-TYPE | 16 | 17 | 10 | 8

'KBTBD13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S718. Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
KBTBD13 MUTATED | 3 | 1 | 0 | 2 | 3
KBTBD13 WILD-TYPE | 10 | 7 | 14 | 11 | 4

'KBTBD13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S719. Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
KBTBD13 MUTATED | 3 | 1
KBTBD13 WILD-TYPE | 10 | 14

'KBTBD13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S720. Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
KBTBD13 MUTATED | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0
KBTBD13 WILD-TYPE | 4 | 6 | 4 | 2 | 2 | 1 | 3 | 2

'KBTBD13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S721. Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
KBTBD13 MUTATED | 4 | 1 | 1 | 3
KBTBD13 WILD-TYPE | 12 | 7 | 13 | 13

'KBTBD13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S722. Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
KBTBD13 MUTATED | 4 | 0 | 1 | 4
KBTBD13 WILD-TYPE | 12 | 16 | 3 | 14

'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S723. Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
KBTBD13 MUTATED | 4 | 2 | 3
KBTBD13 WILD-TYPE | 22 | 9 | 15

'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S724. Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
KBTBD13 MUTATED | 0 | 4 | 2 | 3 | 0
KBTBD13 WILD-TYPE | 13 | 14 | 6 | 11 | 2

'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S725. Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
KBTBD13 MUTATED | 4 | 2 | 3
KBTBD13 WILD-TYPE | 17 | 12 | 16

'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S726. Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
KBTBD13 MUTATED | 4 | 4 | 1
KBTBD13 WILD-TYPE | 26 | 12 | 7

'RASIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S727. Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
RASIP1 MUTATED | 1 | 3 | 2 | 0
RASIP1 WILD-TYPE | 20 | 17 | 8 | 9

'RASIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S728. Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
RASIP1 MUTATED | 2 | 2 | 2 | 0 | 0
RASIP1 WILD-TYPE | 11 | 6 | 12 | 13 | 7

'RASIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S729. Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
RASIP1 MUTATED | 1 | 1
RASIP1 WILD-TYPE | 12 | 14

'RASIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 1

Table S730. Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
RASIP1 MUTATED | 2 | 3 | 1 | 0
RASIP1 WILD-TYPE | 14 | 5 | 13 | 16

Figure S35. Get High-res Image Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RASIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S731. Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
RASIP1 MUTATED | 3 | 3 | 0 | 0
RASIP1 WILD-TYPE | 13 | 13 | 4 | 18

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 1

Table S732. Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
RASIP1 MUTATED | 3 | 3 | 0
RASIP1 WILD-TYPE | 23 | 8 | 18

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S733. Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
RASIP1 MUTATED | 1 | 2 | 0 | 3 | 0
RASIP1 WILD-TYPE | 12 | 16 | 8 | 11 | 2

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S734. Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
RASIP1 MUTATED | 2 | 3 | 1
RASIP1 WILD-TYPE | 19 | 11 | 18

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S735. Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
RASIP1 MUTATED | 4 | 2 | 0
RASIP1 WILD-TYPE | 26 | 14 | 8

'AR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S736. Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
AR MUTATED | 2 | 0 | 1 | 1
AR WILD-TYPE | 19 | 20 | 9 | 8

'AR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S737. Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
AR MUTATED | 2 | 0 | 1 | 0 | 0
AR WILD-TYPE | 11 | 8 | 13 | 13 | 7

'AR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S738. Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
AR MUTATED | 1 | 2
AR WILD-TYPE | 12 | 13

'AR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S739. Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
AR MUTATED | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0
AR WILD-TYPE | 4 | 5 | 5 | 3 | 2 | 1 | 3 | 2

'AR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S740. Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
AR MUTATED | 2 | 0 | 1 | 0
AR WILD-TYPE | 14 | 8 | 13 | 16

'AR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S741. Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
AR MUTATED | 2 | 1 | 0 | 0
AR WILD-TYPE | 14 | 15 | 4 | 18

'AR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S742. Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
AR MUTATED | 2 | 1 | 0
AR WILD-TYPE | 24 | 10 | 18

'AR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S743. Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
AR MUTATED | 1 | 1 | 0 | 1 | 0
AR WILD-TYPE | 12 | 17 | 8 | 13 | 2

'AR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S744. Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
AR MUTATED | 1 | 2 | 0
AR WILD-TYPE | 20 | 12 | 19

'AR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S745. Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
AR MUTATED | 2 | 1 | 0
AR WILD-TYPE | 28 | 15 | 8

'KNDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S746. Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
KNDC1 MUTATED | 1 | 4 | 2 | 2
KNDC1 WILD-TYPE | 20 | 16 | 8 | 7

'KNDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 1

Table S747. Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
KNDC1 MUTATED | 0 | 2 | 2 | 1 | 3
KNDC1 WILD-TYPE | 13 | 6 | 12 | 12 | 4

'KNDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S748. Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
KNDC1 MUTATED | 1 | 2
KNDC1 WILD-TYPE | 12 | 13

'KNDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S749. Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
KNDC1 MUTATED | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0
KNDC1 WILD-TYPE | 3 | 6 | 4 | 3 | 3 | 1 | 3 | 2

'KNDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 1

Table S750. Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
KNDC1 MUTATED | 0 | 3 | 1 | 4
KNDC1 WILD-TYPE | 16 | 5 | 13 | 12

Figure S36. Get High-res Image Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KNDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S751. Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
KNDC1 MUTATED | 1 | 2 | 0 | 5
KNDC1 WILD-TYPE | 15 | 14 | 4 | 13

'KNDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S752. Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
KNDC1 MUTATED | 2 | 2 | 4
KNDC1 WILD-TYPE | 24 | 9 | 14

'KNDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S753. Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
KNDC1 MUTATED | 1 | 3 | 3 | 1 | 0
KNDC1 WILD-TYPE | 12 | 15 | 5 | 13 | 2

'KNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S754. Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
KNDC1 MUTATED | 4 | 0 | 4
KNDC1 WILD-TYPE | 17 | 14 | 15

'KNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S755. Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
KNDC1 MUTATED | 3 | 3 | 2
KNDC1 WILD-TYPE | 27 | 13 | 6

'SEZ6L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S756. Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
SEZ6L2 MUTATED | 2 | 4 | 0 | 2
SEZ6L2 WILD-TYPE | 19 | 16 | 10 | 7

'SEZ6L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S757. Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
SEZ6L2 MUTATED | 2 | 2 | 1 | 1 | 0
SEZ6L2 WILD-TYPE | 11 | 6 | 13 | 12 | 7

'SEZ6L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S758. Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
SEZ6L2 MUTATED | 1 | 2
SEZ6L2 WILD-TYPE | 12 | 13

'SEZ6L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S759. Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
SEZ6L2 MUTATED | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0
SEZ6L2 WILD-TYPE | 5 | 4 | 4 | 3 | 3 | 1 | 3 | 2

'SEZ6L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S760. Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
SEZ6L2 MUTATED | 2 | 0 | 2 | 2
SEZ6L2 WILD-TYPE | 14 | 8 | 12 | 14

'SEZ6L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S761. Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
SEZ6L2 MUTATED | 2 | 2 | 0 | 2
SEZ6L2 WILD-TYPE | 14 | 14 | 4 | 16

'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S762. Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
SEZ6L2 MUTATED | 4 | 0 | 2
SEZ6L2 WILD-TYPE | 22 | 11 | 16

'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S763. Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
SEZ6L2 MUTATED | 1 | 1 | 2 | 2 | 0
SEZ6L2 WILD-TYPE | 12 | 17 | 6 | 12 | 2

'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S764. Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
SEZ6L2 MUTATED | 2 | 2 | 2
SEZ6L2 WILD-TYPE | 19 | 12 | 17

'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S765. Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
SEZ6L2 MUTATED | 4 | 1 | 1
SEZ6L2 WILD-TYPE | 26 | 15 | 7

'VARS MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S766. Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
VARS MUTATED | 2 | 2 | 1 | 1
VARS WILD-TYPE | 19 | 18 | 9 | 8

'VARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S767. Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
VARS MUTATED | 0 | 1 | 3 | 2 | 0
VARS WILD-TYPE | 13 | 7 | 11 | 11 | 7

'VARS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S768. Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
VARS MUTATED | 0 | 3
VARS WILD-TYPE | 13 | 12

'VARS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S769. Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
VARS MUTATED | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1
VARS WILD-TYPE | 5 | 5 | 5 | 3 | 2 | 1 | 3 | 1

'VARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S770. Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
VARS MUTATED | 1 | 0 | 4 | 1
VARS WILD-TYPE | 15 | 8 | 10 | 15

'VARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0665 (Fisher's exact test), Q value = 1

Table S771. Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
VARS MUTATED | 0 | 4 | 1 | 1
VARS WILD-TYPE | 16 | 12 | 3 | 17

'VARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S772. Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
VARS MUTATED | 2 | 2 | 2
VARS WILD-TYPE | 24 | 9 | 16

'VARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S773. Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
VARS MUTATED | 2 | 2 | 0 | 2 | 0
VARS WILD-TYPE | 11 | 16 | 8 | 12 | 2

'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S774. Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
VARS MUTATED | 2 | 1 | 3
VARS WILD-TYPE | 19 | 13 | 16

'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S775. Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
VARS MUTATED | 3 | 2 | 1
VARS WILD-TYPE | 27 | 14 | 7

'IER5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S776. Gene #82: 'IER5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
IER5 MUTATED | 3 | 0 | 0 | 0
IER5 WILD-TYPE | 18 | 20 | 10 | 9

'IER5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S777. Gene #82: 'IER5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
IER5 MUTATED | 1 | 0
IER5 WILD-TYPE | 12 | 15

'NMU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S778. Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
NMU MUTATED | 1 | 2 | 1 | 0
NMU WILD-TYPE | 20 | 18 | 9 | 9

'NMU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S779. Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
NMU MUTATED | 1 | 1 | 1 | 1 | 0
NMU WILD-TYPE | 12 | 7 | 13 | 12 | 7

'NMU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S780. Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
NMU MUTATED | 1 | 0
NMU WILD-TYPE | 12 | 15

'NMU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 1

Table S781. Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
NMU MUTATED | 0 | 2 | 0 | 1
NMU WILD-TYPE | 16 | 6 | 14 | 15

'NMU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S782. Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
NMU MUTATED | 0 | 2 | 0 | 1
NMU WILD-TYPE | 16 | 14 | 4 | 17

'NMU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S783. Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
NMU MUTATED | 2 | 1 | 1
NMU WILD-TYPE | 24 | 10 | 17

'NMU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S784. Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
NMU MUTATED | 2 | 2 | 0 | 0 | 0
NMU WILD-TYPE | 11 | 16 | 8 | 14 | 2

'NMU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S785. Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
NMU MUTATED | 1 | 1 | 2
NMU WILD-TYPE | 20 | 13 | 17

'NMU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S786. Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
NMU MUTATED | 2 | 2 | 0
NMU WILD-TYPE | 28 | 14 | 8

'TMEM189 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S787. Gene #84: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
TMEM189 MUTATED | 3 | 0 | 0 | 0
TMEM189 WILD-TYPE | 18 | 20 | 10 | 9

'TMEM189 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S788. Gene #84: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
TMEM189 MUTATED | 1 | 0
TMEM189 WILD-TYPE | 12 | 15

'ADAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S789. Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
ADAD2 MUTATED | 2 | 0 | 1 | 1
ADAD2 WILD-TYPE | 19 | 20 | 9 | 8

'ADAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S790. Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
ADAD2 MUTATED | 0 | 0 | 2 | 1 | 1
ADAD2 WILD-TYPE | 13 | 8 | 12 | 12 | 6

'ADAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S791. Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
ADAD2 MUTATED | 0 | 1
ADAD2 WILD-TYPE | 13 | 14

'ADAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S792. Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
ADAD2 MUTATED | 1 | 0 | 2 | 1
ADAD2 WILD-TYPE | 15 | 8 | 12 | 15

'ADAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S793. Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
ADAD2 MUTATED | 0 | 2 | 1 | 1
ADAD2 WILD-TYPE | 16 | 14 | 3 | 17

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00898 (Fisher's exact test), Q value = 1

Table S794. Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
ADAD2 MUTATED | 0 | 3 | 1
ADAD2 WILD-TYPE | 26 | 8 | 17

Figure S37. Get High-res Image Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S795. Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
ADAD2 MUTATED | 0 | 3 | 0 | 1 | 0
ADAD2 WILD-TYPE | 13 | 15 | 8 | 13 | 2

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 1

Table S796. Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
ADAD2 MUTATED | 0 | 3 | 1
ADAD2 WILD-TYPE | 21 | 11 | 18

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S797. Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
ADAD2 MUTATED | 1 | 2 | 1
ADAD2 WILD-TYPE | 29 | 14 | 7

'PLEC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S798. Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
PLEC MUTATED | 4 | 7 | 1 | 1
PLEC WILD-TYPE | 17 | 13 | 9 | 8

'PLEC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S799. Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
PLEC MUTATED | 2 | 2 | 1 | 3 | 2
PLEC WILD-TYPE | 11 | 6 | 13 | 10 | 5

'PLEC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S800. Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
PLEC MUTATED | 1 | 4
PLEC WILD-TYPE | 12 | 11

'PLEC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 1

Table S801. Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
PLEC MUTATED | 0 | 4 | 0 | 0 | 0 | 0 | 1 | 0
PLEC WILD-TYPE | 5 | 2 | 5 | 3 | 3 | 1 | 2 | 2

Figure S38. Get High-res Image Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLEC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S802. Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
PLEC MUTATED | 2 | 0 | 5 | 3
PLEC WILD-TYPE | 14 | 8 | 9 | 13

'PLEC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S803. Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
PLEC MUTATED | 2 | 4 | 0 | 4
PLEC WILD-TYPE | 14 | 12 | 4 | 14

'PLEC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S804. Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
PLEC MUTATED | 6 | 2 | 2
PLEC WILD-TYPE | 20 | 9 | 16

'PLEC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S805. Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
PLEC MUTATED | 4 | 2 | 2 | 2 | 0
PLEC WILD-TYPE | 9 | 16 | 6 | 12 | 2

'PLEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S806. Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
PLEC MUTATED | 6 | 3 | 1
PLEC WILD-TYPE | 15 | 11 | 18

'PLEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S807. Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
PLEC MUTATED | 7 | 2 | 1
PLEC WILD-TYPE | 23 | 14 | 7

'RGMB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S808. Gene #87: 'RGMB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
RGMB MUTATED | 2 | 2 | 2 | 0
RGMB WILD-TYPE | 19 | 18 | 8 | 9

'RGMB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S809. Gene #87: 'RGMB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
RGMB MUTATED | 1 | 1
RGMB WILD-TYPE | 12 | 14

'CLIC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S810. Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
CLIC6 MUTATED | 2 | 3 | 0 | 0
CLIC6 WILD-TYPE | 19 | 17 | 10 | 9

'CLIC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S811. Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
CLIC6 MUTATED | 1 | 1 | 1 | 1 | 0
CLIC6 WILD-TYPE | 12 | 7 | 13 | 12 | 7

'CLIC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S812. Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
CLIC6 MUTATED | 2 | 0
CLIC6 WILD-TYPE | 11 | 15

'CLIC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S813. Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
CLIC6 MUTATED | 2 | 1 | 0 | 1
CLIC6 WILD-TYPE | 14 | 7 | 14 | 15

'CLIC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S814. Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
CLIC6 MUTATED | 2 | 1 | 1 | 0
CLIC6 WILD-TYPE | 14 | 15 | 3 | 18

'CLIC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S815. Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
CLIC6 MUTATED | 2 | 2 | 0
CLIC6 WILD-TYPE | 24 | 9 | 18

'CLIC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S816. Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
CLIC6 MUTATED | 0 | 1 | 1 | 2 | 0
CLIC6 WILD-TYPE | 13 | 17 | 7 | 12 | 2

'CLIC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S817. Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
CLIC6 MUTATED | 2 | 2 | 0
CLIC6 WILD-TYPE | 19 | 12 | 19

'CLIC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S818. Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
CLIC6 MUTATED | 3 | 1 | 0
CLIC6 WILD-TYPE | 27 | 15 | 8

'ZNF814 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S819. Gene #89: 'ZNF814 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
ZNF814 MUTATED | 1 | 1 | 1 | 0
ZNF814 WILD-TYPE | 20 | 19 | 9 | 9

'ZNF814 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S820. Gene #89: 'ZNF814 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
ZNF814 MUTATED | 1 | 1
ZNF814 WILD-TYPE | 12 | 14

'DSPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S821. Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
DSPP MUTATED | 4 | 4 | 1 | 0
DSPP WILD-TYPE | 17 | 16 | 9 | 9

'DSPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0612 (Fisher's exact test), Q value = 1

Table S822. Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
DSPP MUTATED | 1 | 4 | 1 | 3 | 0
DSPP WILD-TYPE | 12 | 4 | 13 | 10 | 7

'DSPP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S823. Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
DSPP MUTATED | 2 | 2
DSPP WILD-TYPE | 11 | 13

'DSPP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S824. Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
DSPP MUTATED | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 1
DSPP WILD-TYPE | 4 | 5 | 5 | 2 | 3 | 1 | 3 | 1

'DSPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S825. Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
DSPP MUTATED | 3 | 1 | 2 | 3
DSPP WILD-TYPE | 13 | 7 | 12 | 13

'DSPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S826. Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
DSPP MUTATED | 4 | 1 | 1 | 3
DSPP WILD-TYPE | 12 | 15 | 3 | 15

'DSPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S827. Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
DSPP MUTATED | 3 | 3 | 3
DSPP WILD-TYPE | 23 | 8 | 15

'DSPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S828. Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
DSPP MUTATED | 1 | 4 | 1 | 2 | 1
DSPP WILD-TYPE | 12 | 14 | 7 | 12 | 1

'DSPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S829. Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
DSPP MUTATED | 3 | 3 | 3
DSPP WILD-TYPE | 18 | 11 | 16

'DSPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S830. Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
DSPP MUTATED | 5 | 3 | 1
DSPP WILD-TYPE | 25 | 13 | 7

'AMDHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S831. Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
AMDHD1 MUTATED | 5 | 2 | 1 | 2
AMDHD1 WILD-TYPE | 16 | 18 | 9 | 7

'AMDHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S832. Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
AMDHD1 MUTATED | 1 | 1 | 4 | 2 | 1
AMDHD1 WILD-TYPE | 12 | 7 | 10 | 11 | 6

'AMDHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S833. Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
AMDHD1 MUTATED | 0 | 3
AMDHD1 WILD-TYPE | 13 | 12

'AMDHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S834. Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
AMDHD1 MUTATED | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1
AMDHD1 WILD-TYPE | 4 | 6 | 5 | 3 | 2 | 1 | 3 | 1

'AMDHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S835. Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
AMDHD1 MUTATED | 3 | 2 | 3 | 1
AMDHD1 WILD-TYPE | 13 | 6 | 11 | 15

'AMDHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S836. Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
AMDHD1 MUTATED | 1 | 4 | 2 | 2
AMDHD1 WILD-TYPE | 15 | 12 | 2 | 16

'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S837. Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
AMDHD1 MUTATED | 3 | 4 | 2
AMDHD1 WILD-TYPE | 23 | 7 | 16

'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S838. Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
AMDHD1 MUTATED | 1 | 4 | 1 | 3 | 0
AMDHD1 WILD-TYPE | 12 | 14 | 7 | 11 | 2

'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S839. Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
AMDHD1 MUTATED | 3 | 2 | 4
AMDHD1 WILD-TYPE | 18 | 12 | 15

'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S840. Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
AMDHD1 MUTATED | 4 | 3 | 2
AMDHD1 WILD-TYPE | 26 | 13 | 6

'CRIPAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S841. Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
CRIPAK MUTATED | 2 | 4 | 1 | 3
CRIPAK WILD-TYPE | 19 | 16 | 9 | 6

'CRIPAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S842. Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
CRIPAK MUTATED | 2 | 1 | 2 | 2 | 2
CRIPAK WILD-TYPE | 11 | 7 | 12 | 11 | 5

'CRIPAK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S843. Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
CRIPAK MUTATED | 1 | 3
CRIPAK WILD-TYPE | 12 | 12

'CRIPAK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S844. Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
CRIPAK MUTATED | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 0
CRIPAK WILD-TYPE | 4 | 4 | 4 | 3 | 3 | 1 | 3 | 2

'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S845. Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
CRIPAK MUTATED | 2 | 0 | 3 | 4
CRIPAK WILD-TYPE | 14 | 8 | 11 | 12

'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S846. Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
CRIPAK MUTATED | 2 | 2 | 1 | 4
CRIPAK WILD-TYPE | 14 | 14 | 3 | 14

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S847. Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
CRIPAK MUTATED | 5 | 1 | 3
CRIPAK WILD-TYPE | 21 | 10 | 15

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S848. Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
CRIPAK MUTATED | 1 | 4 | 3 | 1 | 0
CRIPAK WILD-TYPE | 12 | 14 | 5 | 13 | 2

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S849. Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
CRIPAK MUTATED | 5 | 1 | 3
CRIPAK WILD-TYPE | 16 | 13 | 16

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S850. Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
CRIPAK MUTATED | 5 | 4 | 0
CRIPAK WILD-TYPE | 25 | 12 | 8

'NOM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S851. Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
NOM1 MUTATED | 2 | 2 | 1 | 1
NOM1 WILD-TYPE | 19 | 18 | 9 | 8

'NOM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S852. Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
NOM1 MUTATED | 1 | 1 | 1 | 0 | 2
NOM1 WILD-TYPE | 12 | 7 | 13 | 13 | 5

'NOM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S853. Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
NOM1 MUTATED | 1 | 1
NOM1 WILD-TYPE | 12 | 14

'NOM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S854. Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
NOM1 MUTATED | 2 | 0 | 1 | 2
NOM1 WILD-TYPE | 14 | 8 | 13 | 14

'NOM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S855. Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
NOM1 MUTATED | 2 | 1 | 0 | 2
NOM1 WILD-TYPE | 14 | 15 | 4 | 16

'NOM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S856. Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
NOM1 MUTATED | 2 | 1 | 2
NOM1 WILD-TYPE | 24 | 10 | 16

'NOM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S857. Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
NOM1 MUTATED | 2 | 1 | 1 | 1 | 0
NOM1 WILD-TYPE | 11 | 17 | 7 | 13 | 2

'NOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S858. Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
NOM1 MUTATED | 3 | 0 | 2
NOM1 WILD-TYPE | 18 | 14 | 17

'NOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S859. Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
NOM1 MUTATED | 3 | 1 | 1
NOM1 WILD-TYPE | 27 | 15 | 7

'MAP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S860. Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
MAP7 MUTATED | 2 | 1 | 0 | 0
MAP7 WILD-TYPE | 19 | 19 | 10 | 9

'MAP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S861. Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
MAP7 MUTATED | 1 | 0 | 0 | 1 | 1
MAP7 WILD-TYPE | 12 | 8 | 14 | 12 | 6

'MAP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S862. Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
MAP7 MUTATED | 1 | 0
MAP7 WILD-TYPE | 12 | 15

'MAP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S863. Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
MAP7 MUTATED | 1 | 0 | 1 | 1
MAP7 WILD-TYPE | 15 | 8 | 13 | 15

'MAP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S864. Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
MAP7 MUTATED | 1 | 0 | 0 | 2
MAP7 WILD-TYPE | 15 | 16 | 4 | 16

'MAP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S865. Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
MAP7 MUTATED | 1 | 0 | 2
MAP7 WILD-TYPE | 25 | 11 | 16

'MAP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S866. Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
MAP7 MUTATED | 0 | 1 | 1 | 1 | 0
MAP7 WILD-TYPE | 13 | 17 | 7 | 13 | 2

'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S867. Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
MAP7 MUTATED | 1 | 1 | 1
MAP7 WILD-TYPE | 20 | 13 | 18

'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S868. Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
MAP7 MUTATED | 1 | 1 | 1
MAP7 WILD-TYPE | 29 | 15 | 7

'PTX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S869. Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
PTX4 MUTATED | 1 | 1 | 1 | 0
PTX4 WILD-TYPE | 20 | 19 | 9 | 9

'PTX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S870. Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
PTX4 MUTATED | 1 | 0 | 1 | 1 | 0
PTX4 WILD-TYPE | 12 | 8 | 13 | 12 | 7

'PTX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S871. Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
PTX4 MUTATED | 0 | 1
PTX4 WILD-TYPE | 13 | 14

'PTX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S872. Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
PTX4 MUTATED | 2 | 0 | 1 | 0
PTX4 WILD-TYPE | 14 | 8 | 13 | 16

'PTX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S873. Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
PTX4 MUTATED | 1 | 1 | 1 | 0
PTX4 WILD-TYPE | 15 | 15 | 3 | 18

'PTX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S874. Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
PTX4 MUTATED | 2 | 1 | 0
PTX4 WILD-TYPE | 24 | 10 | 18

'PTX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S875. Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
PTX4 MUTATED | 1 | 1 | 0 | 1 | 0
PTX4 WILD-TYPE | 12 | 17 | 8 | 13 | 2

'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S876. Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
PTX4 MUTATED | 1 | 2 | 0
PTX4 WILD-TYPE | 20 | 12 | 19

'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S877. Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
PTX4 MUTATED | 2 | 0 | 1
PTX4 WILD-TYPE | 28 | 16 | 7

'LRP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S878. Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
LRP11 MUTATED | 2 | 2 | 1 | 0
LRP11 WILD-TYPE | 19 | 18 | 9 | 9

'LRP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 1

Table S879. Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
LRP11 MUTATED | 1 | 0 | 4 | 0 | 0
LRP11 WILD-TYPE | 12 | 8 | 10 | 13 | 7

'LRP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S880. Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
LRP11 MUTATED | 0 | 1
LRP11 WILD-TYPE | 13 | 14

'LRP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S881. Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
LRP11 MUTATED | 1 | 1 | 2 | 1
LRP11 WILD-TYPE | 15 | 7 | 12 | 15

'LRP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S882. Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
LRP11 MUTATED | 1 | 3 | 0 | 1
LRP11 WILD-TYPE | 15 | 13 | 4 | 17

'LRP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S883. Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
LRP11 MUTATED | 2 | 2 | 1
LRP11 WILD-TYPE | 24 | 9 | 17

'LRP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S884. Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
LRP11 MUTATED | 1 | 2 | 0 | 2 | 0
LRP11 WILD-TYPE | 12 | 16 | 8 | 12 | 2

'LRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S885. Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
LRP11 MUTATED | 2 | 2 | 1
LRP11 WILD-TYPE | 19 | 12 | 18

'LRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S886. Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
LRP11 MUTATED | 3 | 2 | 0
LRP11 WILD-TYPE | 27 | 14 | 8

'PDCD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S887. Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
PDCD6 MUTATED | 0 | 1 | 1 | 1
PDCD6 WILD-TYPE | 21 | 19 | 9 | 8

'PDCD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S888. Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
PDCD6 MUTATED | 1 | 0 | 0 | 1 | 1
PDCD6 WILD-TYPE | 12 | 8 | 14 | 12 | 6

'PDCD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S889. Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
PDCD6 MUTATED | 1 | 0
PDCD6 WILD-TYPE | 12 | 15

'PDCD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S890. Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
PDCD6 MUTATED | 2 | 0 | 1
PDCD6 WILD-TYPE | 24 | 11 | 17

'PDCD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S891. Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
PDCD6 MUTATED | 1 | 1 | 1 | 0 | 0
PDCD6 WILD-TYPE | 12 | 17 | 7 | 14 | 2

'PDCD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S892. Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
PDCD6 MUTATED | 1 | 1 | 1
PDCD6 WILD-TYPE | 20 | 13 | 18

'PDCD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S893. Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
PDCD6 MUTATED | 2 | 1 | 0
PDCD6 WILD-TYPE | 28 | 15 | 8

'SHOX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S894. Gene #98: 'SHOX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
SHOX2 MUTATED | 2 | 0 | 0 | 1
SHOX2 WILD-TYPE | 19 | 20 | 10 | 8

'SHOX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S895. Gene #98: 'SHOX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
SHOX2 MUTATED | 1 | 0
SHOX2 WILD-TYPE | 12 | 15

'UQCRFS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S896. Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
UQCRFS1 MUTATED | 1 | 1 | 1 | 1
UQCRFS1 WILD-TYPE | 20 | 19 | 9 | 8

'UQCRFS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S897. Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
UQCRFS1 MUTATED | 2 | 1 | 2 | 0 | 0
UQCRFS1 WILD-TYPE | 11 | 7 | 12 | 13 | 7

'UQCRFS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S898. Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
UQCRFS1 MUTATED | 0 | 2
UQCRFS1 WILD-TYPE | 13 | 13

'UQCRFS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S899. Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
UQCRFS1 MUTATED | 1 | 1 | 1 | 1
UQCRFS1 WILD-TYPE | 15 | 7 | 13 | 15

'UQCRFS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S900. Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
UQCRFS1 MUTATED | 1 | 2 | 0 | 1
UQCRFS1 WILD-TYPE | 15 | 14 | 4 | 17

'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S901. Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
UQCRFS1 MUTATED | 4 | 0 | 1
UQCRFS1 WILD-TYPE | 22 | 11 | 17

'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S902. Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
UQCRFS1 MUTATED | 3 | 0 | 1 | 1 | 0
UQCRFS1 WILD-TYPE | 10 | 18 | 7 | 13 | 2

'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S903. Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
UQCRFS1 MUTATED | 2 | 2 | 1
UQCRFS1 WILD-TYPE | 19 | 12 | 18

'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S904. Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
UQCRFS1 MUTATED | 4 | 0 | 1
UQCRFS1 WILD-TYPE | 26 | 16 | 7

'CTBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S905. Gene #100: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
CTBP2 MUTATED | 1 | 2 | 0 | 0
CTBP2 WILD-TYPE | 20 | 18 | 10 | 9

'CTBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S906. Gene #100: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
CTBP2 MUTATED | 0 | 1
CTBP2 WILD-TYPE | 13 | 14

'PRKAR1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S907. Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
PRKAR1A MUTATED | 2 | 1 | 2 | 1
PRKAR1A WILD-TYPE | 19 | 19 | 8 | 8

'PRKAR1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S908. Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
PRKAR1A MUTATED | 1 | 1 | 2 | 1 | 1
PRKAR1A WILD-TYPE | 12 | 7 | 12 | 12 | 6

'PRKAR1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S909. Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
PRKAR1A MUTATED | 1 | 3
PRKAR1A WILD-TYPE | 12 | 12

'PRKAR1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S910. Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
PRKAR1A MUTATED | 1 | 2 | 0 | 0 | 1 | 0 | 0 | 0
PRKAR1A WILD-TYPE | 4 | 4 | 5 | 3 | 2 | 1 | 3 | 2

'PRKAR1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S911. Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
PRKAR1A MUTATED | 2 | 1 | 3 | 0
PRKAR1A WILD-TYPE | 14 | 7 | 11 | 16

'PRKAR1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S912. Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
PRKAR1A MUTATED | 1 | 3 | 1 | 1
PRKAR1A WILD-TYPE | 15 | 13 | 3 | 17

'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S913. Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
PRKAR1A MUTATED | 5 | 1 | 0
PRKAR1A WILD-TYPE | 21 | 10 | 18

'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S914. Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
PRKAR1A MUTATED | 3 | 1 | 1 | 1 | 0
PRKAR1A WILD-TYPE | 10 | 17 | 7 | 13 | 2

'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 1

Table S915. Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
PRKAR1A MUTATED | 5 | 1 | 0
PRKAR1A WILD-TYPE | 16 | 13 | 19

Figure S39. Get High-res Image Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S916. Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
PRKAR1A MUTATED | 5 | 1 | 0
PRKAR1A WILD-TYPE | 25 | 15 | 8

'JMJD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S917. Gene #102: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
JMJD4 MUTATED | 1 | 1 | 1 | 0
JMJD4 WILD-TYPE | 20 | 19 | 9 | 9

'JMJD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S918. Gene #102: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
JMJD4 MUTATED | 0 | 2
JMJD4 WILD-TYPE | 13 | 13

'HSD17B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S919. Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
HSD17B1 MUTATED | 2 | 2 | 0 | 0
HSD17B1 WILD-TYPE | 19 | 18 | 10 | 9

'HSD17B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 1

Table S920. Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
HSD17B1 MUTATED | 0 | 0 | 0 | 3 | 1
HSD17B1 WILD-TYPE | 13 | 8 | 14 | 10 | 6

Figure S40. Get High-res Image Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HSD17B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S921. Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
HSD17B1 MUTATED | 2 | 1
HSD17B1 WILD-TYPE | 11 | 14

'HSD17B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S922. Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
HSD17B1 MUTATED | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0
HSD17B1 WILD-TYPE | 5 | 6 | 4 | 3 | 2 | 1 | 2 | 2

'HSD17B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S923. Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
HSD17B1 MUTATED | 2 | 0 | 1 | 1
HSD17B1 WILD-TYPE | 14 | 8 | 13 | 15

'HSD17B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00799 (Fisher's exact test), Q value = 1

Table S924. Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
HSD17B1 MUTATED | 0 | 0 | 2 | 2
HSD17B1 WILD-TYPE | 16 | 16 | 2 | 16

Figure S41. Get High-res Image Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S925. Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
HSD17B1 MUTATED | 2 | 1 | 1
HSD17B1 WILD-TYPE | 24 | 10 | 17

'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S926. Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
HSD17B1 MUTATED | 1 | 1 | 0 | 2 | 0
HSD17B1 WILD-TYPE | 12 | 17 | 8 | 12 | 2

'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S927. Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
HSD17B1 MUTATED | 2 | 0 | 2
HSD17B1 WILD-TYPE | 19 | 14 | 17

'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S928. Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
HSD17B1 MUTATED | 2 | 1 | 1
HSD17B1 WILD-TYPE | 28 | 15 | 7

'COQ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S929. Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
COQ2 MUTATED | 1 | 1 | 1 | 2
COQ2 WILD-TYPE | 20 | 19 | 9 | 7

'COQ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S930. Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
COQ2 MUTATED | 0 | 1 | 1 | 1 | 1
COQ2 WILD-TYPE | 13 | 7 | 13 | 12 | 6

'COQ2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S931. Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
COQ2 MUTATED | 1 | 1
COQ2 WILD-TYPE | 12 | 14

'COQ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S932. Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
COQ2 MUTATED | 0 | 1 | 2 | 1
COQ2 WILD-TYPE | 16 | 7 | 12 | 15

'COQ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S933. Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
COQ2 MUTATED | 0 | 2 | 0 | 2
COQ2 WILD-TYPE | 16 | 14 | 4 | 16

'COQ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S934. Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
COQ2 MUTATED | 2 | 1 | 1
COQ2 WILD-TYPE | 24 | 10 | 17

'COQ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S935. Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
COQ2 MUTATED | 1 | 2 | 1 | 0 | 0
COQ2 WILD-TYPE | 12 | 16 | 7 | 14 | 2

'COQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S936. Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
COQ2 MUTATED | 2 | 0 | 2
COQ2 WILD-TYPE | 19 | 14 | 17

'COQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S937. Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
COQ2 MUTATED | 2 | 2 | 0
COQ2 WILD-TYPE | 28 | 14 | 8

'FEZ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S938. Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
FEZ2 MUTATED | 0 | 2 | 1 | 0
FEZ2 WILD-TYPE | 21 | 18 | 9 | 9

'FEZ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S939. Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
FEZ2 MUTATED | 0 | 1 | 1 | 0 | 1
FEZ2 WILD-TYPE | 13 | 7 | 13 | 13 | 6

'FEZ2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S940. Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
FEZ2 MUTATED | 0 | 1
FEZ2 WILD-TYPE | 13 | 14

'FEZ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S941. Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
FEZ2 MUTATED | 0 | 1 | 0 | 2
FEZ2 WILD-TYPE | 16 | 7 | 14 | 14

'FEZ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S942. Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
FEZ2 MUTATED | 1 | 0 | 0 | 2
FEZ2 WILD-TYPE | 15 | 16 | 4 | 16

'FEZ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S943. Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
FEZ2 MUTATED | 0 | 1 | 2
FEZ2 WILD-TYPE | 26 | 10 | 16

'FEZ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S944. Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
FEZ2 MUTATED | 0 | 1 | 1 | 1 | 0
FEZ2 WILD-TYPE | 13 | 17 | 7 | 13 | 2

'FEZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S945. Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
FEZ2 MUTATED | 2 | 0 | 1
FEZ2 WILD-TYPE | 19 | 14 | 18

'FEZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S946. Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
FEZ2 MUTATED | 1 | 1 | 1
FEZ2 WILD-TYPE | 29 | 15 | 7

'DLEU7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S947. Gene #106: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
DLEU7 MUTATED | 2 | 0 | 1 | 0
DLEU7 WILD-TYPE | 19 | 20 | 9 | 9

'DLEU7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S948. Gene #106: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
DLEU7 MUTATED | 0 | 1
DLEU7 WILD-TYPE | 13 | 14

'RNF135 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S949. Gene #107: 'RNF135 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
RNF135 MUTATED | 1 | 2 | 0 | 0
RNF135 WILD-TYPE | 20 | 18 | 10 | 9

'RNF135 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S950. Gene #107: 'RNF135 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
RNF135 MUTATED | 1 | 0
RNF135 WILD-TYPE | 12 | 15

'SPIRE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S951. Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
SPIRE2 MUTATED | 0 | 1 | 1 | 1
SPIRE2 WILD-TYPE | 21 | 19 | 9 | 8

'SPIRE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 1

Table S952. Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
SPIRE2 MUTATED | 1 | 0 | 0 | 0 | 2
SPIRE2 WILD-TYPE | 12 | 8 | 14 | 13 | 5

Figure S42. Get High-res Image Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPIRE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S953. Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
SPIRE2 MUTATED | 1 | 1
SPIRE2 WILD-TYPE | 12 | 14

'SPIRE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S954. Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
SPIRE2 MUTATED | 1 | 0 | 1 | 1
SPIRE2 WILD-TYPE | 15 | 8 | 13 | 15

'SPIRE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S955. Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
SPIRE2 MUTATED | 1 | 0 | 0 | 2
SPIRE2 WILD-TYPE | 15 | 16 | 4 | 16

'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S956. Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
SPIRE2 MUTATED | 2 | 0 | 1
SPIRE2 WILD-TYPE | 24 | 11 | 17

'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S957. Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
SPIRE2 MUTATED | 0 | 1 | 1 | 1 | 0
SPIRE2 WILD-TYPE | 13 | 17 | 7 | 13 | 2

'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S958. Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
SPIRE2 MUTATED | 1 | 1 | 1
SPIRE2 WILD-TYPE | 20 | 13 | 18

'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S959. Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
SPIRE2 MUTATED | 2 | 1 | 0
SPIRE2 WILD-TYPE | 28 | 15 | 8

'KRTAP5-5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S960. Gene #109: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
KRTAP5-5 MUTATED | 1 | 1 | 1 | 0
KRTAP5-5 WILD-TYPE | 20 | 19 | 9 | 9

'SGK223 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S961. Gene #110: 'SGK223 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
SGK223 MUTATED | 1 | 2 | 0 | 0
SGK223 WILD-TYPE | 20 | 18 | 10 | 9

'SGK223 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S962. Gene #110: 'SGK223 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
SGK223 MUTATED | 1 | 1
SGK223 WILD-TYPE | 12 | 14

'C9ORF66 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S963. Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
C9ORF66 MUTATED | 2 | 2 | 1 | 0
C9ORF66 WILD-TYPE | 19 | 18 | 9 | 9

'C9ORF66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S964. Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
C9ORF66 MUTATED | 1 | 1 | 1 | 2 | 0
C9ORF66 WILD-TYPE | 12 | 7 | 13 | 11 | 7

'C9ORF66 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S965. Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
C9ORF66 MUTATED | 1 | 1
C9ORF66 WILD-TYPE | 12 | 14

'C9ORF66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S966. Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
C9ORF66 MUTATED | 2 | 1 | 1 | 1
C9ORF66 WILD-TYPE | 14 | 7 | 13 | 15

'C9ORF66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S967. Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
C9ORF66 MUTATED | 1 | 2 | 1 | 1
C9ORF66 WILD-TYPE | 15 | 14 | 3 | 17

'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S968. Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
C9ORF66 MUTATED | 2 | 2 | 1
C9ORF66 WILD-TYPE | 24 | 9 | 17

'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S969. Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
C9ORF66 MUTATED | 1 | 2 | 0 | 2 | 0
C9ORF66 WILD-TYPE | 12 | 16 | 8 | 12 | 2

'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S970. Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
C9ORF66 MUTATED | 2 | 0 | 3
C9ORF66 WILD-TYPE | 19 | 14 | 16

'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S971. Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
C9ORF66 MUTATED | 2 | 2 | 1
C9ORF66 WILD-TYPE | 28 | 14 | 7

'AQP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S972. Gene #112: 'AQP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
AQP7 MUTATED | 1 | 2 | 0 | 0
AQP7 WILD-TYPE | 20 | 18 | 10 | 9

'ADAMTS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S973. Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
ADAMTS7 MUTATED | 0 | 3 | 0 | 1
ADAMTS7 WILD-TYPE | 21 | 17 | 10 | 8

'ADAMTS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S974. Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
ADAMTS7 MUTATED | 0 | 0 | 1 | 2 | 1
ADAMTS7 WILD-TYPE | 13 | 8 | 13 | 11 | 6

'ADAMTS7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 1

Table S975. Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
ADAMTS7 MUTATED | 3 | 0
ADAMTS7 WILD-TYPE | 10 | 15

'ADAMTS7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S976. Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8
--- | --- | --- | --- | --- | --- | --- | --- | ---
ALL | 5 | 6 | 5 | 3 | 3 | 1 | 3 | 2
ADAMTS7 MUTATED | 0 | 0 | 2 | 0 | 1 | 0 | 0 | 0
ADAMTS7 WILD-TYPE | 5 | 6 | 3 | 3 | 2 | 1 | 3 | 2

'ADAMTS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0914 (Fisher's exact test), Q value = 1

Table S977. Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
ADAMTS7 MUTATED | 0 | 1 | 0 | 3
ADAMTS7 WILD-TYPE | 16 | 7 | 14 | 13

'ADAMTS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S978. Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
ADAMTS7 MUTATED | 0 | 1 | 0 | 3
ADAMTS7 WILD-TYPE | 16 | 15 | 4 | 15

'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 1

Table S979. Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
ADAMTS7 MUTATED | 0 | 1 | 3
ADAMTS7 WILD-TYPE | 26 | 10 | 15

'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S980. Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
ADAMTS7 MUTATED | 0 | 3 | 1 | 0 | 0
ADAMTS7 WILD-TYPE | 13 | 15 | 7 | 14 | 2

'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S981. Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
ADAMTS7 MUTATED | 0 | 1 | 3
ADAMTS7 WILD-TYPE | 21 | 13 | 16

'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0391 (Fisher's exact test), Q value = 1

Table S982. Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
ADAMTS7 MUTATED | 0 | 3 | 1
ADAMTS7 WILD-TYPE | 30 | 13 | 7

Figure S43. Get High-res Image Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PCDHB13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S983. Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
PCDHB13 MUTATED | 1 | 1 | 2 | 1
PCDHB13 WILD-TYPE | 20 | 19 | 8 | 8

'PCDHB13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S984. Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
PCDHB13 MUTATED | 0 | 1 | 3 | 0 | 0
PCDHB13 WILD-TYPE | 13 | 7 | 11 | 13 | 7

'PCDHB13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S985. Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
PCDHB13 MUTATED | 0 | 2
PCDHB13 WILD-TYPE | 13 | 13

'PCDHB13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S986. Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
PCDHB13 MUTATED | 0 | 0 | 3 | 1
PCDHB13 WILD-TYPE | 16 | 8 | 11 | 15

'PCDHB13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S987. Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
PCDHB13 MUTATED | 0 | 3 | 0 | 1
PCDHB13 WILD-TYPE | 16 | 13 | 4 | 17

'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S988. Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
PCDHB13 MUTATED | 3 | 0 | 1
PCDHB13 WILD-TYPE | 23 | 11 | 17

'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0601 (Fisher's exact test), Q value = 1

Table S989. Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
PCDHB13 MUTATED | 3 | 0 | 1 | 0 | 0
PCDHB13 WILD-TYPE | 10 | 18 | 7 | 14 | 2

'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S990. Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
PCDHB13 MUTATED | 3 | 0 | 1
PCDHB13 WILD-TYPE | 18 | 14 | 18

'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S991. Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
PCDHB13 MUTATED | 3 | 0 | 1
PCDHB13 WILD-TYPE | 27 | 16 | 7

'CSGALNACT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S992. Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
CSGALNACT2 MUTATED | 0 | 3 | 0 | 0
CSGALNACT2 WILD-TYPE | 21 | 17 | 10 | 9

'CSGALNACT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 1

Table S993. Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
CSGALNACT2 MUTATED | 1 | 0 | 0 | 0 | 2
CSGALNACT2 WILD-TYPE | 12 | 8 | 14 | 13 | 5

Figure S44. Get High-res Image Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSGALNACT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S994. Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
CSGALNACT2 MUTATED | 1 | 0
CSGALNACT2 WILD-TYPE | 12 | 15

'CSGALNACT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S995. Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
CSGALNACT2 MUTATED | 1 | 0 | 0 | 2
CSGALNACT2 WILD-TYPE | 15 | 8 | 14 | 14

'CSGALNACT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S996. Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
CSGALNACT2 MUTATED | 1 | 0 | 0 | 2
CSGALNACT2 WILD-TYPE | 15 | 16 | 4 | 16

'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S997. Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
CSGALNACT2 MUTATED | 1 | 0 | 2
CSGALNACT2 WILD-TYPE | 25 | 11 | 16

'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S998. Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
CSGALNACT2 MUTATED | 0 | 2 | 0 | 1 | 0
CSGALNACT2 WILD-TYPE | 13 | 16 | 8 | 13 | 2

'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S999. Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
CSGALNACT2 MUTATED | 0 | 1 | 2
CSGALNACT2 WILD-TYPE | 21 | 13 | 17

'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1000. Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
CSGALNACT2 MUTATED | 1 | 2 | 0
CSGALNACT2 WILD-TYPE | 29 | 14 | 8

'HLA-A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1001. Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
HLA-A MUTATED | 2 | 1 | 0 | 0
HLA-A WILD-TYPE | 19 | 19 | 10 | 9

'HLA-A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1002. Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
HLA-A MUTATED | 1 | 0 | 1 | 1 | 0
HLA-A WILD-TYPE | 12 | 8 | 13 | 12 | 7

'HLA-A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1003. Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
HLA-A MUTATED | 1 | 1
HLA-A WILD-TYPE | 12 | 14

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1004. Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
HLA-A MUTATED | 1 | 1 | 0 | 1
HLA-A WILD-TYPE | 15 | 7 | 14 | 15

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S1005. Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
HLA-A MUTATED | 1 | 1 | 1 | 0
HLA-A WILD-TYPE | 15 | 15 | 3 | 18

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1006. Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
HLA-A MUTATED | 2 | 0 | 1
HLA-A WILD-TYPE | 24 | 11 | 17

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1007. Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
HLA-A MUTATED | 1 | 0 | 1 | 1 | 0
HLA-A WILD-TYPE | 12 | 18 | 7 | 13 | 2

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1008. Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
HLA-A MUTATED | 2 | 0 | 1
HLA-A WILD-TYPE | 19 | 14 | 18

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1009. Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
HLA-A MUTATED | 2 | 0 | 1
HLA-A WILD-TYPE | 28 | 16 | 7

'MTFMT MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1010. Gene #117: 'MTFMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
MTFMT MUTATED | 2 | 1 | 0 | 0
MTFMT WILD-TYPE | 19 | 19 | 10 | 9

'MTFMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1011. Gene #117: 'MTFMT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
MTFMT MUTATED | 0 | 1
MTFMT WILD-TYPE | 13 | 14

'NLRP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1012. Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
NLRP5 MUTATED | 2 | 2 | 0 | 0
NLRP5 WILD-TYPE | 19 | 18 | 10 | 9

'NLRP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S1013. Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
NLRP5 MUTATED | 0 | 0 | 0 | 2 | 1
NLRP5 WILD-TYPE | 13 | 8 | 14 | 11 | 6

'NLRP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S1014. Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
NLRP5 MUTATED | 1 | 0
NLRP5 WILD-TYPE | 12 | 15

'NLRP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1015. Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
NLRP5 MUTATED | 1 | 0 | 1 | 1
NLRP5 WILD-TYPE | 15 | 8 | 13 | 15

'NLRP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S1016. Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
NLRP5 MUTATED | 0 | 0 | 1 | 2
NLRP5 WILD-TYPE | 16 | 16 | 3 | 16

'NLRP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1017. Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
NLRP5 MUTATED | 1 | 1 | 1
NLRP5 WILD-TYPE | 25 | 10 | 17

'NLRP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1018. Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
NLRP5 MUTATED | 1 | 1 | 1 | 0 | 0
NLRP5 WILD-TYPE | 12 | 17 | 7 | 14 | 2

'NLRP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1019. Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
NLRP5 MUTATED | 1 | 1 | 1
NLRP5 WILD-TYPE | 20 | 13 | 18

'NLRP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0772 (Fisher's exact test), Q value = 1

Table S1020. Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
NLRP5 MUTATED | 1 | 0 | 2
NLRP5 WILD-TYPE | 29 | 16 | 6

'KCNJ11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 1

Table S1021. Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 21 | 20 | 10 | 9
KCNJ11 MUTATED | 0 | 1 | 3 | 0
KCNJ11 WILD-TYPE | 21 | 19 | 7 | 9

Figure S45. Get High-res Image Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNJ11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1022. Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 8 | 14 | 13 | 7
KCNJ11 MUTATED | 1 | 1 | 2 | 0 | 0
KCNJ11 WILD-TYPE | 12 | 7 | 12 | 13 | 7

'KCNJ11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1023. Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients | CLUS_1 | CLUS_2
--- | --- | ---
ALL | 13 | 15
KCNJ11 MUTATED | 1 | 1
KCNJ11 WILD-TYPE | 12 | 14

'KCNJ11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1024. Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 8 | 14 | 16
KCNJ11 MUTATED | 1 | 1 | 2 | 0
KCNJ11 WILD-TYPE | 15 | 7 | 12 | 16

'KCNJ11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1025. Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 16 | 16 | 4 | 18
KCNJ11 MUTATED | 1 | 3 | 0 | 0
KCNJ11 WILD-TYPE | 15 | 13 | 4 | 18

'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S1026. Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 11 | 18
KCNJ11 MUTATED | 4 | 0 | 0
KCNJ11 WILD-TYPE | 22 | 11 | 18

'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0536 (Fisher's exact test), Q value = 1

Table S1027. Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 13 | 18 | 8 | 14 | 2
KCNJ11 MUTATED | 2 | 0 | 0 | 1 | 1
KCNJ11 WILD-TYPE | 11 | 18 | 8 | 13 | 1

'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1028. Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 14 | 19
KCNJ11 MUTATED | 2 | 2 | 0
KCNJ11 WILD-TYPE | 19 | 12 | 19

'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1029. Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 30 | 16 | 8
KCNJ11 MUTATED | 4 | 0 | 0
KCNJ11 WILD-TYPE | 26 | 16 | 8

Methods & Data
Input

- Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

- Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ACC-TP/15172905/transformed.cor.cli.txt

- Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/15087341/ACC-TP.transferedmergedcluster.txt

- Number of patients = 62

- Number of significantly mutated genes = 119

- Number of Molecular subtypes = 10

- Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

- Analysis Results (MD5 checksum)

- Auxiliary Data (MD5 checksum)

- MAGE-TAB File (MD5 checksum)

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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