Clustering of miRseq precursor expression: consensus hierarchical
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma (Primary solid tumor)
02 April 2015  |  analyses__2015_04_02
Maintainer Information
Citation Information
Maintained by Hailei Zhang (Broad Institute)
Cite as Broad Institute TCGA Genome Data Analysis Center (2015): Clustering of miRseq precursor expression: consensus hierarchical. Broad Institute of MIT and Harvard. doi:10.7908/C1ZP4541
- Overview
+ Introduction
- Summary

Median absolute deviation (MAD) was used to select 135 most variable miRs. Consensus ward linkage hierarchical clustering of 47 samples and 135 miRs identified 5 subtypes with the stability of the clustering increasing for k = 2 to k = 10.

- Results
+ miR expression patterns of molecular subtypes
+ Silhouette widths, Cophenetic Correlation Coefficients and Consensus matrix
+ Samples assignment with silhouette width
+ Marker miRs of each subtype
+ Methods & Data