name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-BA-4074-01A-01D-1434-08	179	174	5	133	2.793296e-02	0	coding only	34834024	38	124	1.090887e-06	3.559738e-06
TCGA-BA-4075-01A-01D-1434-08	231	224	7	168	3.030303e-02	1	exome+100bp flanks	34834024	54	160	1.550208e-06	4.593210e-06
TCGA-BA-4076-01A-01D-1434-08	415	390	25	302	6.024096e-02	1	exome+100bp flanks	34834024	86	287	2.468851e-06	8.239071e-06
TCGA-BA-4077-01B-01D-1434-08	397	380	17	283	4.282116e-02	1	exome+100bp flanks	34834024	93	269	2.669804e-06	7.722335e-06
TCGA-BA-4078-01A-01D-1434-08	550	520	30	391	5.454545e-02	1	exome+100bp flanks	34834024	124	376	3.559738e-06	1.079404e-05
TCGA-BA-5149-01A-01D-1512-08	150	144	6	119	4.000000e-02	1	exome+100bp flanks	34834024	24	114	6.889816e-07	3.272662e-06
TCGA-BA-5151-01A-01D-1434-08	117	110	7	81	5.982906e-02	1	exome+100bp flanks	34834024	26	77	7.463967e-07	2.210482e-06
TCGA-BA-5152-01A-02D-1870-08	621	603	18	447	2.898551e-02	0	coding only	34834024	151	431	4.334842e-06	1.237296e-05
TCGA-BA-5153-01A-01D-1434-08	59	57	2	47	3.389831e-02	1	exome+100bp flanks	34834024	7	44	2.009530e-07	1.263133e-06
TCGA-BA-5555-01A-01D-1512-08	174	163	11	133	6.321839e-02	1	exome+100bp flanks	34834024	30	125	8.612269e-07	3.588446e-06
TCGA-BA-5556-01A-01D-1512-08	181	169	12	131	6.629834e-02	1	exome+100bp flanks	34834024	32	123	9.186421e-07	3.531030e-06
TCGA-BA-5557-01A-01D-1512-08	71	62	9	44	1.267606e-01	1	exome+100bp flanks	34834024	18	41	5.167362e-07	1.177010e-06
TCGA-BA-5558-01A-01D-1512-08	204	195	9	134	4.411765e-02	1	exome+100bp flanks	34834024	56	121	1.607624e-06	3.473615e-06
TCGA-BA-5559-01A-01D-1512-08	106	102	4	78	3.773585e-02	1	exome+100bp flanks	34834024	22	74	6.315664e-07	2.124360e-06
TCGA-BA-6868-01B-12D-1912-08	193	183	10	136	5.181347e-02	1	exome+100bp flanks	34834024	44	132	1.263133e-06	3.789399e-06
TCGA-BA-6869-01A-11D-1870-08	571	540	31	411	5.429072e-02	1	exome+100bp flanks	34834024	122	391	3.502323e-06	1.122466e-05
TCGA-BA-6870-01A-11D-1870-08	126	120	6	89	4.761905e-02	1	exome+100bp flanks	34834024	29	81	8.325194e-07	2.325313e-06
TCGA-BA-6871-01A-11D-1870-08	171	166	5	132	2.923977e-02	0	coding only	34834024	32	127	9.186421e-07	3.645861e-06
TCGA-BA-6872-01A-11D-1870-08	209	199	10	161	4.784689e-02	1	exome+100bp flanks	34834024	35	153	1.004765e-06	4.392257e-06
TCGA-BA-6873-01A-11D-1870-08	90	83	7	63	7.777778e-02	1	exome+100bp flanks	34834024	19	61	5.454437e-07	1.751161e-06
TCGA-BA-7269-01A-11D-2012-08	123	115	8	85	6.504065e-02	1	exome+100bp flanks	34834024	30	82	8.612269e-07	2.354020e-06
TCGA-BA-A4IF-01A-11D-A25Y-08	124	118	6	98	4.838710e-02	1	exome+100bp flanks	34834024	18	94	5.167362e-07	2.698511e-06
TCGA-BA-A4IG-01A-11D-A25Y-08	150	144	6	108	4.000000e-02	1	exome+100bp flanks	34834024	34	103	9.760572e-07	2.956879e-06
TCGA-BA-A4IH-01A-11D-A25Y-08	62	59	3	48	4.838710e-02	1	exome+100bp flanks	34834024	10	46	2.870756e-07	1.320548e-06
TCGA-BA-A4II-01A-11D-A25Y-08	128	122	6	92	4.687500e-02	1	exome+100bp flanks	34834024	29	84	8.325194e-07	2.411435e-06
TCGA-BA-A6D8-01A-31D-A31L-08	148	135	13	115	8.783784e-02	1	exome+100bp flanks	34834024	19	111	5.454437e-07	3.186540e-06
TCGA-BA-A6DA-01A-31D-A31L-08	846	808	38	612	4.491726e-02	1	exome+100bp flanks	34834024	187	575	5.368315e-06	1.650685e-05
TCGA-BA-A6DB-01A-11D-A30E-08	47	44	3	33	6.382979e-02	1	exome+100bp flanks	34834024	11	32	3.157832e-07	9.186421e-07
TCGA-BA-A6DD-01A-12D-A31L-08	79	76	3	58	3.797468e-02	1	exome+100bp flanks	34834024	15	58	4.306135e-07	1.665039e-06
TCGA-BA-A6DE-01A-22D-A31L-08	157	149	8	111	5.095541e-02	1	exome+100bp flanks	34834024	35	106	1.004765e-06	3.043002e-06
TCGA-BA-A6DF-01A-11D-A30E-08	213	210	3	167	1.408451e-02	0	coding only	34834024	42	158	1.205718e-06	4.535795e-06
TCGA-BA-A6DG-01A-21D-A30E-08	49	47	2	28	4.081633e-02	1	exome+100bp flanks	34834024	17	27	4.880286e-07	7.751042e-07
TCGA-BA-A6DI-01A-11D-A30E-08	138	127	11	100	7.971014e-02	1	exome+100bp flanks	34834024	26	92	7.463967e-07	2.641096e-06
TCGA-BA-A6DJ-01A-11D-A30E-08	365	356	9	254	2.465753e-02	0	coding only	34834024	100	242	2.870756e-06	6.947231e-06
TCGA-BA-A6DL-01A-21D-A30E-08	130	123	7	99	5.384615e-02	1	exome+100bp flanks	34834024	22	95	6.315664e-07	2.727219e-06
TCGA-BB-4217-01A-11D-2078-08	41	41	0	31	0	1	exome+100bp flanks	34834024	10	31	2.870756e-07	8.899345e-07
TCGA-BB-4223-01A-01D-1434-08	389	384	5	287	1.285347e-02	0	coding only	34834024	92	272	2.641096e-06	7.808458e-06
TCGA-BB-4224-01A-01D-1434-08	103	97	6	76	5.825243e-02	1	exome+100bp flanks	34834024	20	70	5.741513e-07	2.009530e-06
TCGA-BB-4225-01A-01D-1434-08	97	96	1	63	1.030928e-02	0	coding only	34834024	32	60	9.186421e-07	1.722454e-06
TCGA-BB-4227-01A-01D-1870-08	329	319	10	222	3.039514e-02	1	exome+100bp flanks	34834024	92	207	2.641096e-06	5.942466e-06
TCGA-BB-4228-01A-01D-1434-08	63	60	3	45	4.761905e-02	1	exome+100bp flanks	34834024	14	45	4.019059e-07	1.291840e-06
TCGA-BB-7861-01A-11D-2229-08	32	28	4	21	1.250000e-01	1	exome+100bp flanks	34834024	7	21	2.009530e-07	6.028589e-07
TCGA-BB-7862-01A-21D-2229-08	485	469	16	341	3.298969e-02	1	exome+100bp flanks	34834024	119	319	3.416200e-06	9.157713e-06
TCGA-BB-7863-01A-11D-2229-08	127	123	4	89	3.149606e-02	1	exome+100bp flanks	34834024	32	83	9.186421e-07	2.382728e-06
TCGA-BB-7864-01A-11D-2229-08	105	100	5	76	4.761905e-02	1	exome+100bp flanks	34834024	21	73	6.028589e-07	2.095652e-06
TCGA-BB-7870-01A-11D-2229-08	365	339	26	258	7.123288e-02	1	exome+100bp flanks	34834024	76	247	2.181775e-06	7.090768e-06
TCGA-BB-7871-01A-11D-2229-08	546	520	26	418	4.761905e-02	1	exome+100bp flanks	34834024	100	403	2.870756e-06	1.156915e-05
TCGA-BB-7872-01A-11D-2229-08	104	100	4	74	3.846154e-02	1	exome+100bp flanks	34834024	25	70	7.176891e-07	2.009530e-06
TCGA-BB-8596-01A-11D-2394-08	114	110	4	75	3.508772e-02	1	exome+100bp flanks	34834024	34	72	9.760572e-07	2.066945e-06
TCGA-BB-8601-01A-11D-2394-08	85	80	5	61	5.882353e-02	1	exome+100bp flanks	34834024	19	57	5.454437e-07	1.636331e-06
TCGA-BB-A5HU-01A-11D-A28R-08	220	217	3	159	1.363636e-02	0	coding only	34834024	57	156	1.636331e-06	4.478380e-06
TCGA-BB-A5HY-01A-11D-A28R-08	262	256	6	203	2.290076e-02	0	coding only	34834024	47	195	1.349256e-06	5.597975e-06
TCGA-BB-A5HZ-01A-21D-A28R-08	99	93	6	64	6.060606e-02	1	exome+100bp flanks	34834024	29	60	8.325194e-07	1.722454e-06
TCGA-BB-A6UM-01A-12D-A34J-08	85	80	5	57	5.882353e-02	1	exome+100bp flanks	34834024	21	54	6.028589e-07	1.550208e-06
TCGA-BB-A6UO-01A-12D-A34J-08	135	131	4	98	2.962963e-02	0	coding only	34834024	33	95	9.473496e-07	2.727219e-06
TCGA-C9-A47Z-01A-11D-A24D-08	129	125	4	95	3.100775e-02	1	exome+100bp flanks	34834024	30	87	8.612269e-07	2.497558e-06
TCGA-C9-A480-01A-12D-A24D-08	66	63	3	43	4.545455e-02	1	exome+100bp flanks	34834024	19	38	5.454437e-07	1.090887e-06
TCGA-CN-4723-01A-01D-1434-08	1091	1067	24	791	2.199817e-02	0	coding only	34834024	265	757	7.607505e-06	2.173163e-05
TCGA-CN-4725-01A-01D-1434-08	79	75	4	52	5.063291e-02	1	exome+100bp flanks	34834024	22	51	6.315664e-07	1.464086e-06
TCGA-CN-4726-01A-01D-1434-08	108	101	7	72	6.481481e-02	1	exome+100bp flanks	34834024	28	68	8.038118e-07	1.952114e-06
TCGA-CN-4727-01A-01D-1434-08	540	517	23	402	4.259259e-02	1	exome+100bp flanks	34834024	110	382	3.157832e-06	1.096629e-05
TCGA-CN-4728-01A-01D-1434-08	166	158	8	118	4.819277e-02	1	exome+100bp flanks	34834024	38	112	1.090887e-06	3.215247e-06
TCGA-CN-4729-01A-01D-1434-08	186	179	7	124	3.763441e-02	1	exome+100bp flanks	34834024	52	111	1.492793e-06	3.186540e-06
TCGA-CN-4730-01A-01D-1434-08	205	199	6	155	2.926829e-02	0	coding only	34834024	42	145	1.205718e-06	4.162597e-06
TCGA-CN-4731-01A-01D-1434-08	151	148	3	103	1.986755e-02	0	coding only	34834024	45	100	1.291840e-06	2.870756e-06
TCGA-CN-4733-01A-02D-1870-08	52	48	4	35	7.692308e-02	1	exome+100bp flanks	34834024	13	33	3.731983e-07	9.473496e-07
TCGA-CN-4734-01A-01D-1434-08	191	189	2	135	1.047120e-02	0	coding only	34834024	51	134	1.464086e-06	3.846814e-06
TCGA-CN-4735-01A-01D-1434-08	191	180	11	136	5.759162e-02	1	exome+100bp flanks	34834024	41	131	1.177010e-06	3.760691e-06
TCGA-CN-4736-01A-01D-1434-08	123	119	4	100	3.252033e-02	1	exome+100bp flanks	34834024	16	95	4.593210e-07	2.727219e-06
TCGA-CN-4737-01A-01D-1434-08	63	60	3	41	4.761905e-02	1	exome+100bp flanks	34834024	18	35	5.167362e-07	1.004765e-06
TCGA-CN-4738-01A-02D-1512-08	138	134	4	99	2.898551e-02	0	coding only	34834024	35	96	1.004765e-06	2.755926e-06
TCGA-CN-4739-01A-02D-1512-08	269	254	15	192	5.576208e-02	1	exome+100bp flanks	34834024	59	181	1.693746e-06	5.196069e-06
TCGA-CN-4740-01A-01D-1434-08	187	178	9	136	4.812834e-02	1	exome+100bp flanks	34834024	39	127	1.119595e-06	3.645861e-06
TCGA-CN-4741-01A-01D-1434-08	216	206	10	154	4.629630e-02	1	exome+100bp flanks	34834024	48	142	1.377963e-06	4.076474e-06
TCGA-CN-4742-01A-02D-1512-08	105	98	7	78	6.666667e-02	1	exome+100bp flanks	34834024	20	77	5.741513e-07	2.210482e-06
TCGA-CN-5355-01A-01D-1434-08	144	137	7	110	4.861111e-02	1	exome+100bp flanks	34834024	26	106	7.463967e-07	3.043002e-06
TCGA-CN-5356-01A-01D-1434-08	433	410	23	313	5.311778e-02	1	exome+100bp flanks	34834024	95	304	2.727219e-06	8.727100e-06
TCGA-CN-5358-01A-01D-1512-08	71	68	3	55	4.225352e-02	1	exome+100bp flanks	34834024	13	50	3.731983e-07	1.435378e-06
TCGA-CN-5359-01A-01D-1434-08	198	192	6	145	3.030303e-02	1	exome+100bp flanks	34834024	44	142	1.263133e-06	4.076474e-06
TCGA-CN-5360-01A-01D-1434-08	623	593	30	459	4.815409e-02	1	exome+100bp flanks	34834024	132	429	3.789399e-06	1.231555e-05
TCGA-CN-5361-01A-01D-1434-08	145	137	8	92	5.517241e-02	1	exome+100bp flanks	34834024	45	86	1.291840e-06	2.468851e-06
TCGA-CN-5363-01A-01D-1434-08	239	226	13	165	5.439331e-02	1	exome+100bp flanks	34834024	61	157	1.751161e-06	4.507088e-06
TCGA-CN-5364-01A-01D-1434-08	163	155	8	131	4.907975e-02	1	exome+100bp flanks	34834024	21	129	6.028589e-07	3.703276e-06
TCGA-CN-5365-01A-01D-1434-08	115	104	11	80	9.565217e-02	1	exome+100bp flanks	34834024	24	77	6.889816e-07	2.210482e-06
TCGA-CN-5366-01A-01D-1434-08	134	124	10	98	7.462687e-02	1	exome+100bp flanks	34834024	24	96	6.889816e-07	2.755926e-06
TCGA-CN-5367-01A-01D-1434-08	130	122	8	97	6.153846e-02	1	exome+100bp flanks	34834024	21	92	6.028589e-07	2.641096e-06
TCGA-CN-5369-01A-01D-1434-08	597	579	18	443	3.015075e-02	1	exome+100bp flanks	34834024	128	411	3.674568e-06	1.179881e-05
TCGA-CN-5370-01A-01D-2012-08	132	126	6	100	4.545455e-02	1	exome+100bp flanks	34834024	26	95	7.463967e-07	2.727219e-06
TCGA-CN-5373-01A-01D-1434-08	201	196	5	143	2.487562e-02	0	coding only	34834024	51	134	1.464086e-06	3.846814e-06
TCGA-CN-5374-01A-01D-1434-08	221	213	8	153	3.619910e-02	1	exome+100bp flanks	34834024	58	143	1.665039e-06	4.105182e-06
TCGA-CN-6010-01A-11D-1683-08	188	181	7	136	3.723404e-02	1	exome+100bp flanks	34834024	41	125	1.177010e-06	3.588446e-06
TCGA-CN-6011-01A-11D-1683-08	433	418	15	312	3.464203e-02	1	exome+100bp flanks	34834024	100	295	2.870756e-06	8.468732e-06
TCGA-CN-6012-01A-11D-1683-08	141	139	2	113	1.418440e-02	0	coding only	34834024	26	108	7.463967e-07	3.100417e-06
TCGA-CN-6013-01A-11D-1683-08	226	222	4	172	1.769912e-02	0	coding only	34834024	49	160	1.406671e-06	4.593210e-06
TCGA-CN-6016-01A-11D-1683-08	144	141	3	104	2.083333e-02	0	coding only	34834024	34	98	9.760572e-07	2.813341e-06
TCGA-CN-6017-01A-11D-1683-08	9	9	0	7	0	1	exome+100bp flanks	34834024	2	6	5.741513e-08	1.722454e-07
TCGA-CN-6018-01A-11D-1683-08	144	138	6	99	4.166667e-02	1	exome+100bp flanks	34834024	37	97	1.062180e-06	2.784634e-06
TCGA-CN-6019-01A-11D-1683-08	162	157	5	128	3.086420e-02	1	exome+100bp flanks	34834024	28	126	8.038118e-07	3.617153e-06
TCGA-CN-6020-01A-11D-1683-08	194	183	11	131	5.670103e-02	1	exome+100bp flanks	34834024	49	127	1.406671e-06	3.645861e-06
TCGA-CN-6021-01A-11D-1683-08	346	327	19	261	5.491329e-02	1	exome+100bp flanks	34834024	65	244	1.865992e-06	7.004646e-06
TCGA-CN-6022-01A-21D-1683-08	95	94	1	65	1.052632e-02	0	coding only	34834024	28	62	8.038118e-07	1.779869e-06
TCGA-CN-6023-01A-11D-1683-08	134	128	6	108	4.477612e-02	1	exome+100bp flanks	34834024	19	101	5.454437e-07	2.899464e-06
TCGA-CN-6024-01A-11D-1683-08	217	209	8	137	3.686636e-02	1	exome+100bp flanks	34834024	70	130	2.009530e-06	3.731983e-06
TCGA-CN-6988-01A-11D-1912-08	185	181	4	138	2.162162e-02	0	coding only	34834024	41	137	1.177010e-06	3.932936e-06
TCGA-CN-6989-01A-11D-1912-08	127	120	7	91	5.511811e-02	1	exome+100bp flanks	34834024	29	87	8.325194e-07	2.497558e-06
TCGA-CN-6992-01A-11D-1912-08	407	391	16	298	3.931204e-02	1	exome+100bp flanks	34834024	90	282	2.583681e-06	8.095533e-06
TCGA-CN-6994-01A-11D-1912-08	151	140	11	103	7.284768e-02	1	exome+100bp flanks	34834024	32	98	9.186421e-07	2.813341e-06
TCGA-CN-6995-01A-31D-2012-08	266	257	9	207	3.383459e-02	1	exome+100bp flanks	34834024	48	194	1.377963e-06	5.569268e-06
TCGA-CN-6996-01A-11D-1912-08	70	66	4	51	5.714286e-02	1	exome+100bp flanks	34834024	14	47	4.019059e-07	1.349256e-06
TCGA-CN-6997-01A-11D-2012-08	163	160	3	131	1.840491e-02	0	coding only	34834024	29	119	8.325194e-07	3.416200e-06
TCGA-CN-6998-01A-23D-2012-08	106	101	5	69	4.716981e-02	1	exome+100bp flanks	34834024	28	64	8.038118e-07	1.837284e-06
TCGA-CN-A497-01A-11D-A24D-08	417	406	11	318	2.637890e-02	0	coding only	34834024	84	303	2.411435e-06	8.698392e-06
TCGA-CN-A498-01A-11D-A24D-08	145	139	6	109	4.137931e-02	1	exome+100bp flanks	34834024	28	104	8.038118e-07	2.985587e-06
TCGA-CN-A499-01A-11D-A24D-08	54	50	4	38	7.407407e-02	1	exome+100bp flanks	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-CN-A49A-01A-11D-A24D-08	149	143	6	108	4.026846e-02	1	exome+100bp flanks	34834024	34	101	9.760572e-07	2.899464e-06
TCGA-CN-A49B-01A-31D-A24D-08	129	126	3	99	2.325581e-02	0	coding only	34834024	26	92	7.463967e-07	2.641096e-06
TCGA-CN-A49C-01A-11D-A24D-08	76	72	4	46	5.263158e-02	1	exome+100bp flanks	34834024	26	43	7.463967e-07	1.234425e-06
TCGA-CN-A63T-01A-11D-A28R-08	320	305	15	232	4.687500e-02	1	exome+100bp flanks	34834024	72	218	2.066945e-06	6.258249e-06
TCGA-CN-A63U-01A-11D-A30E-08	651	624	27	485	4.147465e-02	1	exome+100bp flanks	34834024	133	463	3.818106e-06	1.329160e-05
TCGA-CN-A63V-01A-11D-A28R-08	100	93	7	77	7.000000e-02	1	exome+100bp flanks	34834024	15	69	4.306135e-07	1.980822e-06
TCGA-CN-A63W-01A-11D-A30E-08	484	470	14	360	2.892562e-02	0	coding only	34834024	102	338	2.928172e-06	9.703157e-06
TCGA-CN-A63Y-01A-11D-A30E-08	216	209	7	145	3.240741e-02	1	exome+100bp flanks	34834024	63	141	1.808577e-06	4.047767e-06
TCGA-CN-A640-01A-21D-A30E-08	102	94	8	74	7.843137e-02	1	exome+100bp flanks	34834024	18	72	5.167362e-07	2.066945e-06
TCGA-CN-A641-01A-11D-A30E-08	269	259	10	194	3.717472e-02	1	exome+100bp flanks	34834024	60	182	1.722454e-06	5.224777e-06
TCGA-CN-A642-01A-12D-A30E-08	113	107	6	86	5.309735e-02	1	exome+100bp flanks	34834024	20	80	5.741513e-07	2.296605e-06
TCGA-CN-A6UY-01A-12D-A34J-08	57	52	5	35	8.771930e-02	1	exome+100bp flanks	34834024	17	33	4.880286e-07	9.473496e-07
TCGA-CN-A6V1-01A-12D-A34J-08	500	492	8	341	1.600000e-02	0	coding only	34834024	149	326	4.277427e-06	9.358666e-06
TCGA-CN-A6V3-01A-12D-A34J-08	295	283	12	211	4.067797e-02	1	exome+100bp flanks	34834024	70	202	2.009530e-06	5.798928e-06
TCGA-CN-A6V6-01A-12D-A34J-08	105	102	3	74	2.857143e-02	0	coding only	34834024	27	71	7.751042e-07	2.038237e-06
TCGA-CN-A6V7-01A-12D-A34J-08	68	66	2	45	2.941176e-02	0	coding only	34834024	20	42	5.741513e-07	1.205718e-06
TCGA-CQ-5323-01A-01D-1683-08	90	86	4	67	4.444444e-02	1	exome+100bp flanks	34834024	18	61	5.167362e-07	1.751161e-06
TCGA-CQ-5324-01A-01D-1683-08	84	83	1	67	1.190476e-02	0	coding only	34834024	14	64	4.019059e-07	1.837284e-06
TCGA-CQ-5325-01A-01D-1683-08	69	67	2	55	2.898551e-02	0	coding only	34834024	12	54	3.444908e-07	1.550208e-06
TCGA-CQ-5326-01A-01D-1870-08	269	264	5	185	1.858736e-02	0	coding only	34834024	73	179	2.095652e-06	5.138654e-06
TCGA-CQ-5327-01A-01D-1683-08	281	272	9	206	3.202847e-02	1	exome+100bp flanks	34834024	64	195	1.837284e-06	5.597975e-06
TCGA-CQ-5329-01A-01D-1683-08	43	41	2	32	4.651163e-02	1	exome+100bp flanks	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-CQ-5330-01A-01D-1683-08	82	80	2	62	2.439024e-02	0	coding only	34834024	18	61	5.167362e-07	1.751161e-06
TCGA-CQ-5331-01A-02D-1870-08	175	173	2	138	1.142857e-02	0	coding only	34834024	35	128	1.004765e-06	3.674568e-06
TCGA-CQ-5332-01A-01D-1683-08	177	169	8	130	4.519774e-02	1	exome+100bp flanks	34834024	36	122	1.033472e-06	3.502323e-06
TCGA-CQ-5333-01A-01D-2394-08	254	250	4	186	1.574803e-02	0	coding only	34834024	59	179	1.693746e-06	5.138654e-06
TCGA-CQ-5334-01A-01D-1683-08	227	219	8	168	3.524229e-02	1	exome+100bp flanks	34834024	49	160	1.406671e-06	4.593210e-06
TCGA-CQ-6218-01A-11D-1912-08	173	164	9	113	5.202312e-02	1	exome+100bp flanks	34834024	46	110	1.320548e-06	3.157832e-06
TCGA-CQ-6219-01A-11D-1912-08	89	87	2	63	2.247191e-02	0	coding only	34834024	24	62	6.889816e-07	1.779869e-06
TCGA-CQ-6220-01A-11D-1912-08	140	136	4	103	2.857143e-02	0	coding only	34834024	33	98	9.473496e-07	2.813341e-06
TCGA-CQ-6221-01A-11D-2078-08	139	135	4	109	2.877698e-02	0	coding only	34834024	25	102	7.176891e-07	2.928172e-06
TCGA-CQ-6222-01A-11D-1912-08	79	77	2	60	2.531646e-02	0	coding only	34834024	17	57	4.880286e-07	1.636331e-06
TCGA-CQ-6223-01A-11D-1912-08	111	107	4	80	3.603604e-02	1	exome+100bp flanks	34834024	25	77	7.176891e-07	2.210482e-06
TCGA-CQ-6224-01A-11D-1912-08	93	91	2	62	2.150538e-02	0	coding only	34834024	26	59	7.463967e-07	1.693746e-06
TCGA-CQ-6225-01A-11D-1912-08	191	186	5	145	2.617801e-02	0	coding only	34834024	39	131	1.119595e-06	3.760691e-06
TCGA-CQ-6227-01A-11D-1912-08	56	54	2	43	3.571429e-02	1	exome+100bp flanks	34834024	10	41	2.870756e-07	1.177010e-06
TCGA-CQ-6228-01A-11D-1912-08	130	126	4	106	3.076923e-02	1	exome+100bp flanks	34834024	17	97	4.880286e-07	2.784634e-06
TCGA-CQ-6229-01A-11D-1912-08	38	36	2	26	5.263158e-02	1	exome+100bp flanks	34834024	10	25	2.870756e-07	7.176891e-07
TCGA-CQ-7063-01A-11D-2394-08	172	164	8	125	4.651163e-02	1	exome+100bp flanks	34834024	37	118	1.062180e-06	3.387493e-06
TCGA-CQ-7064-01A-11D-2394-08	132	128	4	95	3.030303e-02	1	exome+100bp flanks	34834024	32	91	9.186421e-07	2.612388e-06
TCGA-CQ-7065-01A-11D-2078-08	40	39	1	27	2.500000e-02	1	exome+100bp flanks	34834024	11	26	3.157832e-07	7.463967e-07
TCGA-CQ-7067-01A-11D-2229-08	90	86	4	72	4.444444e-02	1	exome+100bp flanks	34834024	12	65	3.444908e-07	1.865992e-06
TCGA-CQ-7068-01A-11D-2078-08	138	129	9	91	6.521739e-02	1	exome+100bp flanks	34834024	37	87	1.062180e-06	2.497558e-06
TCGA-CQ-7069-01A-11D-2394-08	116	106	10	87	8.620690e-02	1	exome+100bp flanks	34834024	19	82	5.454437e-07	2.354020e-06
TCGA-CQ-7071-01A-12D-A30E-08	556	546	10	436	1.798561e-02	0	coding only	34834024	100	416	2.870756e-06	1.194235e-05
TCGA-CQ-7072-01A-21D-A30E-08	153	145	8	123	5.228758e-02	1	exome+100bp flanks	34834024	22	115	6.315664e-07	3.301370e-06
TCGA-CQ-A4C6-01A-11D-A25D-08	127	123	4	99	3.149606e-02	1	exome+100bp flanks	34834024	24	95	6.889816e-07	2.727219e-06
TCGA-CQ-A4C7-01A-11D-A25D-08	75	73	2	55	2.666667e-02	0	coding only	34834024	18	54	5.167362e-07	1.550208e-06
TCGA-CQ-A4C9-01A-11D-A25D-08	122	118	4	88	3.278689e-02	1	exome+100bp flanks	34834024	29	83	8.325194e-07	2.382728e-06
TCGA-CQ-A4CB-01A-11D-A25D-08	107	105	2	89	1.869159e-02	0	coding only	34834024	16	88	4.593210e-07	2.526266e-06
TCGA-CQ-A4CD-01A-21D-A25D-08	174	169	5	140	2.873563e-02	0	coding only	34834024	26	133	7.463967e-07	3.818106e-06
TCGA-CQ-A4CE-01A-11D-A25Y-08	99	90	9	64	9.090909e-02	1	exome+100bp flanks	34834024	24	62	6.889816e-07	1.779869e-06
TCGA-CQ-A4CG-01A-11D-A25Y-08	100	91	9	71	9.000000e-02	1	exome+100bp flanks	34834024	20	69	5.741513e-07	1.980822e-06
TCGA-CQ-A4CH-01A-11D-A25Y-08	38	33	5	23	1.315789e-01	1	exome+100bp flanks	34834024	10	22	2.870756e-07	6.315664e-07
TCGA-CQ-A4CI-01A-11D-A25Y-08	128	118	10	90	7.812500e-02	1	exome+100bp flanks	34834024	28	87	8.038118e-07	2.497558e-06
TCGA-CR-5243-01A-01D-1512-08	90	88	2	67	2.222222e-02	0	coding only	34834024	19	61	5.454437e-07	1.751161e-06
TCGA-CR-5247-01A-01D-2012-08	95	89	6	70	6.315789e-02	1	exome+100bp flanks	34834024	19	66	5.454437e-07	1.894699e-06
TCGA-CR-5248-01A-01D-2012-08	407	397	10	309	2.457002e-02	0	coding only	34834024	85	290	2.440143e-06	8.325194e-06
TCGA-CR-5249-01A-01D-1512-08	67	60	7	40	1.044776e-01	1	exome+100bp flanks	34834024	18	38	5.167362e-07	1.090887e-06
TCGA-CR-5250-01A-01D-1512-08	40	40	0	32	0	1	exome+100bp flanks	34834024	8	32	2.296605e-07	9.186421e-07
TCGA-CR-6467-01A-11D-1870-08	67	61	6	42	8.955224e-02	1	exome+100bp flanks	34834024	16	39	4.593210e-07	1.119595e-06
TCGA-CR-6470-01A-11D-1870-08	50	49	1	39	2.000000e-02	0	coding only	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-CR-6471-01A-11D-1870-08	168	166	2	123	1.190476e-02	0	coding only	34834024	43	119	1.234425e-06	3.416200e-06
TCGA-CR-6472-01A-11D-1870-08	551	544	7	414	1.270417e-02	0	coding only	34834024	125	389	3.588446e-06	1.116724e-05
TCGA-CR-6473-01A-11D-1870-08	115	110	5	85	4.347826e-02	1	exome+100bp flanks	34834024	23	79	6.602740e-07	2.267898e-06
TCGA-CR-6474-01A-11D-1870-08	140	135	5	103	3.571429e-02	1	exome+100bp flanks	34834024	30	100	8.612269e-07	2.870756e-06
TCGA-CR-6477-01A-11D-1870-08	109	101	8	78	7.339450e-02	1	exome+100bp flanks	34834024	20	72	5.741513e-07	2.066945e-06
TCGA-CR-6478-01A-11D-1870-08	159	155	4	104	2.515723e-02	0	coding only	34834024	50	92	1.435378e-06	2.641096e-06
TCGA-CR-6480-01A-11D-1870-08	144	142	2	101	1.388889e-02	0	coding only	34834024	41	93	1.177010e-06	2.669804e-06
TCGA-CR-6481-01A-11D-1870-08	589	575	14	442	2.376910e-02	0	coding only	34834024	127	425	3.645861e-06	1.220072e-05
TCGA-CR-6482-01A-11D-1870-08	57	57	0	40	0	0	coding only	34834024	17	39	4.880286e-07	1.119595e-06
TCGA-CR-6484-01A-11D-1870-08	334	330	4	245	1.197605e-02	0	coding only	34834024	79	235	2.267898e-06	6.746278e-06
TCGA-CR-6487-01A-11D-1870-08	159	154	5	124	3.144654e-02	1	exome+100bp flanks	34834024	29	118	8.325194e-07	3.387493e-06
TCGA-CR-6488-01A-12D-2078-08	47	45	2	35	4.255319e-02	1	exome+100bp flanks	34834024	10	32	2.870756e-07	9.186421e-07
TCGA-CR-6491-01A-11D-1870-08	180	177	3	125	1.666667e-02	0	coding only	34834024	50	118	1.435378e-06	3.387493e-06
TCGA-CR-6492-01A-12D-2078-08	76	74	2	54	2.631579e-02	0	coding only	34834024	20	52	5.741513e-07	1.492793e-06
TCGA-CR-6493-01A-11D-1870-08	46	43	3	35	6.521739e-02	1	exome+100bp flanks	34834024	7	33	2.009530e-07	9.473496e-07
TCGA-CR-7364-01A-11D-2012-08	553	526	27	410	4.882459e-02	1	exome+100bp flanks	34834024	113	387	3.243955e-06	1.110983e-05
TCGA-CR-7365-01A-11D-2012-08	204	199	5	152	2.450980e-02	0	coding only	34834024	46	141	1.320548e-06	4.047767e-06
TCGA-CR-7367-01A-11D-2012-08	217	210	7	160	3.225806e-02	1	exome+100bp flanks	34834024	49	151	1.406671e-06	4.334842e-06
TCGA-CR-7368-01A-11D-2129-08	250	246	4	188	1.600000e-02	0	coding only	34834024	55	179	1.578916e-06	5.138654e-06
TCGA-CR-7369-01A-11D-2129-08	91	89	2	70	2.197802e-02	0	coding only	34834024	16	67	4.593210e-07	1.923407e-06
TCGA-CR-7370-01A-11D-2129-08	657	632	25	466	3.805175e-02	1	exome+100bp flanks	34834024	160	432	4.593210e-06	1.240167e-05
TCGA-CR-7371-01A-11D-2012-08	358	345	13	260	3.631285e-02	1	exome+100bp flanks	34834024	81	244	2.325313e-06	7.004646e-06
TCGA-CR-7372-01A-11D-2012-08	62	62	0	47	0	0	coding only	34834024	15	45	4.306135e-07	1.291840e-06
TCGA-CR-7373-01A-11D-2012-08	140	138	2	96	1.428571e-02	0	coding only	34834024	39	92	1.119595e-06	2.641096e-06
TCGA-CR-7374-01A-11D-2012-08	437	421	16	331	3.661327e-02	1	exome+100bp flanks	34834024	84	310	2.411435e-06	8.899345e-06
TCGA-CR-7376-01A-11D-2129-08	77	71	6	57	7.792208e-02	1	exome+100bp flanks	34834024	14	54	4.019059e-07	1.550208e-06
TCGA-CR-7377-01A-11D-2012-08	156	153	3	110	1.923077e-02	0	coding only	34834024	40	107	1.148303e-06	3.071709e-06
TCGA-CR-7379-01A-11D-2012-08	179	173	6	118	3.351955e-02	1	exome+100bp flanks	34834024	52	112	1.492793e-06	3.215247e-06
TCGA-CR-7380-01A-11D-2012-08	118	115	3	90	2.542373e-02	0	coding only	34834024	25	86	7.176891e-07	2.468851e-06
TCGA-CR-7382-01A-11D-2129-08	104	99	5	76	4.807692e-02	1	exome+100bp flanks	34834024	20	73	5.741513e-07	2.095652e-06
TCGA-CR-7383-01A-11D-2129-08	154	148	6	113	3.896104e-02	1	exome+100bp flanks	34834024	31	107	8.899345e-07	3.071709e-06
TCGA-CR-7385-01A-11D-2012-08	59	56	3	44	5.084746e-02	1	exome+100bp flanks	34834024	11	43	3.157832e-07	1.234425e-06
TCGA-CR-7386-01A-11D-2012-08	223	221	2	162	8.968610e-03	0	coding only	34834024	59	156	1.693746e-06	4.478380e-06
TCGA-CR-7388-01A-11D-2012-08	868	843	25	653	2.880184e-02	0	coding only	34834024	176	621	5.052531e-06	1.782740e-05
TCGA-CR-7389-01A-11D-2012-08	132	131	1	96	7.575758e-03	0	coding only	34834024	35	91	1.004765e-06	2.612388e-06
TCGA-CR-7390-01A-11D-2012-08	172	164	8	111	4.651163e-02	1	exome+100bp flanks	34834024	52	107	1.492793e-06	3.071709e-06
TCGA-CR-7391-01A-11D-2012-08	14	13	1	11	7.142857e-02	1	exome+100bp flanks	34834024	2	10	5.741513e-08	2.870756e-07
TCGA-CR-7392-01A-11D-2012-08	40	39	1	32	2.500000e-02	1	exome+100bp flanks	34834024	6	29	1.722454e-07	8.325194e-07
TCGA-CR-7393-01A-11D-2012-08	5	4	1	3	2.000000e-01	1	exome+100bp flanks	34834024	1	3	2.870756e-08	8.612269e-08
TCGA-CR-7394-01A-11D-2012-08	218	214	4	155	1.834862e-02	0	coding only	34834024	58	149	1.665039e-06	4.277427e-06
TCGA-CR-7395-01A-11D-2012-08	210	206	4	144	1.904762e-02	0	coding only	34834024	58	134	1.665039e-06	3.846814e-06
TCGA-CR-7397-01A-11D-2012-08	57	55	2	40	3.508772e-02	1	exome+100bp flanks	34834024	14	36	4.019059e-07	1.033472e-06
TCGA-CR-7398-01A-11D-2012-08	414	397	17	298	4.106280e-02	1	exome+100bp flanks	34834024	96	287	2.755926e-06	8.239071e-06
TCGA-CR-7399-01A-11D-2012-08	343	328	15	260	4.373178e-02	1	exome+100bp flanks	34834024	65	248	1.865992e-06	7.119476e-06
TCGA-CR-7401-01A-11D-2012-08	111	104	7	70	6.306306e-02	1	exome+100bp flanks	34834024	33	69	9.473496e-07	1.980822e-06
TCGA-CR-7402-01A-11D-2012-08	1147	1114	33	869	2.877071e-02	0	coding only	34834024	235	818	6.746278e-06	2.348279e-05
TCGA-CR-7404-01A-11D-2129-08	153	146	7	107	4.575163e-02	1	exome+100bp flanks	34834024	34	101	9.760572e-07	2.899464e-06
TCGA-CV-5430-01A-02D-1683-08	186	183	3	138	1.612903e-02	0	coding only	34834024	42	132	1.205718e-06	3.789399e-06
TCGA-CV-5431-01A-01D-1512-08	105	105	0	74	0	0	coding only	34834024	31	73	8.899345e-07	2.095652e-06
TCGA-CV-5432-01A-02D-1683-08	337	324	13	239	3.857567e-02	1	exome+100bp flanks	34834024	81	228	2.325313e-06	6.545325e-06
TCGA-CV-5434-01A-01D-1683-08	177	171	6	137	3.389831e-02	1	exome+100bp flanks	34834024	34	132	9.760572e-07	3.789399e-06
TCGA-CV-5435-01A-01D-1683-08	145	137	8	100	5.517241e-02	1	exome+100bp flanks	34834024	33	95	9.473496e-07	2.727219e-06
TCGA-CV-5436-01A-01D-1512-08	138	127	11	96	7.971014e-02	1	exome+100bp flanks	34834024	29	86	8.325194e-07	2.468851e-06
TCGA-CV-5439-01A-01D-1683-08	133	128	5	93	3.759398e-02	1	exome+100bp flanks	34834024	32	90	9.186421e-07	2.583681e-06
TCGA-CV-5440-01A-01D-1512-08	146	137	9	103	6.164384e-02	1	exome+100bp flanks	34834024	32	101	9.186421e-07	2.899464e-06
TCGA-CV-5441-01A-01D-1512-08	465	446	19	339	4.086022e-02	1	exome+100bp flanks	34834024	98	319	2.813341e-06	9.157713e-06
TCGA-CV-5442-01A-01D-1512-08	293	286	7	230	2.389078e-02	0	coding only	34834024	53	217	1.521501e-06	6.229542e-06
TCGA-CV-5443-01A-01D-1512-08	91	75	16	51	1.758242e-01	1	exome+100bp flanks	34834024	23	50	6.602740e-07	1.435378e-06
TCGA-CV-5444-01A-02D-1512-08	175	164	11	116	6.285714e-02	1	exome+100bp flanks	34834024	45	110	1.291840e-06	3.157832e-06
TCGA-CV-5966-01A-11D-1683-08	136	131	5	102	3.676471e-02	1	exome+100bp flanks	34834024	29	97	8.325194e-07	2.784634e-06
TCGA-CV-5970-01A-11D-1683-08	243	235	8	174	3.292181e-02	1	exome+100bp flanks	34834024	60	167	1.722454e-06	4.794163e-06
TCGA-CV-5971-01A-11D-1683-08	38	35	3	21	7.894737e-02	1	exome+100bp flanks	34834024	13	19	3.731983e-07	5.454437e-07
TCGA-CV-5973-01A-11D-1683-08	82	77	5	53	6.097561e-02	1	exome+100bp flanks	34834024	22	49	6.315664e-07	1.406671e-06
TCGA-CV-5976-01A-11D-1683-08	97	93	4	68	4.123711e-02	1	exome+100bp flanks	34834024	24	64	6.889816e-07	1.837284e-06
TCGA-CV-5977-01A-11D-1683-08	124	116	8	79	6.451613e-02	1	exome+100bp flanks	34834024	35	75	1.004765e-06	2.153067e-06
TCGA-CV-5978-01A-11D-1683-08	222	210	12	165	5.405405e-02	1	exome+100bp flanks	34834024	43	158	1.234425e-06	4.535795e-06
TCGA-CV-5979-01A-11D-1683-08	49	44	5	36	1.020408e-01	1	exome+100bp flanks	34834024	8	35	2.296605e-07	1.004765e-06
TCGA-CV-6003-01A-11D-1683-08	136	127	9	102	6.617647e-02	1	exome+100bp flanks	34834024	25	94	7.176891e-07	2.698511e-06
TCGA-CV-6433-01A-11D-1683-08	74	71	3	55	4.054054e-02	1	exome+100bp flanks	34834024	15	51	4.306135e-07	1.464086e-06
TCGA-CV-6436-01A-11D-1683-08	94	91	3	70	3.191489e-02	1	exome+100bp flanks	34834024	21	68	6.028589e-07	1.952114e-06
TCGA-CV-6441-01A-11D-1683-08	281	275	6	205	2.135231e-02	0	coding only	34834024	66	192	1.894699e-06	5.511852e-06
TCGA-CV-6933-01A-11D-1912-08	145	138	7	106	4.827586e-02	1	exome+100bp flanks	34834024	32	98	9.186421e-07	2.813341e-06
TCGA-CV-6934-01A-11D-1912-08	124	111	13	83	1.048387e-01	1	exome+100bp flanks	34834024	27	79	7.751042e-07	2.267898e-06
TCGA-CV-6935-01A-11D-1912-08	269	260	9	204	3.345725e-02	1	exome+100bp flanks	34834024	52	188	1.492793e-06	5.397022e-06
TCGA-CV-6936-01A-11D-1912-08	332	322	10	239	3.012048e-02	1	exome+100bp flanks	34834024	83	228	2.382728e-06	6.545325e-06
TCGA-CV-6937-01A-11D-2012-08	159	158	1	120	6.289308e-03	0	coding only	34834024	34	113	9.760572e-07	3.243955e-06
TCGA-CV-6938-01A-11D-1912-08	178	172	6	141	3.370787e-02	1	exome+100bp flanks	34834024	30	132	8.612269e-07	3.789399e-06
TCGA-CV-6939-01A-11D-1912-08	58	56	2	44	3.448276e-02	1	exome+100bp flanks	34834024	12	43	3.444908e-07	1.234425e-06
TCGA-CV-6940-01A-11D-1912-08	162	157	5	117	3.086420e-02	1	exome+100bp flanks	34834024	38	109	1.090887e-06	3.129125e-06
TCGA-CV-6941-01A-11D-1912-08	176	167	9	125	5.113636e-02	1	exome+100bp flanks	34834024	40	117	1.148303e-06	3.358785e-06
TCGA-CV-6942-01A-21D-2012-08	270	263	7	201	2.592593e-02	0	coding only	34834024	59	193	1.693746e-06	5.540560e-06
TCGA-CV-6943-01A-11D-1912-08	80	76	4	58	5.000000e-02	1	exome+100bp flanks	34834024	17	53	4.880286e-07	1.521501e-06
TCGA-CV-6945-01A-11D-1912-08	157	151	6	110	3.821656e-02	1	exome+100bp flanks	34834024	39	104	1.119595e-06	2.985587e-06
TCGA-CV-6948-01A-11D-1912-08	245	238	7	179	2.857143e-02	0	coding only	34834024	53	171	1.521501e-06	4.908994e-06
TCGA-CV-6950-01A-11D-1912-08	73	69	4	53	5.479452e-02	1	exome+100bp flanks	34834024	16	48	4.593210e-07	1.377963e-06
TCGA-CV-6951-01A-11D-1912-08	159	156	3	120	1.886792e-02	0	coding only	34834024	33	112	9.473496e-07	3.215247e-06
TCGA-CV-6952-01A-11D-1912-08	204	201	3	151	1.470588e-02	0	coding only	34834024	47	140	1.349256e-06	4.019059e-06
TCGA-CV-6953-01A-11D-1912-08	129	125	4	101	3.100775e-02	1	exome+100bp flanks	34834024	22	100	6.315664e-07	2.870756e-06
TCGA-CV-6954-01A-11D-1912-08	195	187	8	147	4.102564e-02	1	exome+100bp flanks	34834024	39	139	1.119595e-06	3.990352e-06
TCGA-CV-6955-01A-11D-2012-08	155	153	2	114	1.290323e-02	0	coding only	34834024	37	110	1.062180e-06	3.157832e-06
TCGA-CV-6956-01A-21D-2012-08	234	226	8	162	3.418803e-02	1	exome+100bp flanks	34834024	63	155	1.808577e-06	4.449673e-06
TCGA-CV-6959-01A-11D-1912-08	81	76	5	55	6.172840e-02	1	exome+100bp flanks	34834024	21	52	6.028589e-07	1.492793e-06
TCGA-CV-6960-01A-41D-2012-08	221	208	13	159	5.882353e-02	1	exome+100bp flanks	34834024	48	150	1.377963e-06	4.306135e-06
TCGA-CV-6961-01A-21D-1912-08	719	693	26	522	3.616134e-02	1	exome+100bp flanks	34834024	163	493	4.679333e-06	1.415283e-05
TCGA-CV-6962-01A-11D-1912-08	186	174	12	147	6.451613e-02	1	exome+100bp flanks	34834024	26	135	7.463967e-07	3.875521e-06
TCGA-CV-7089-01A-11D-2012-08	203	196	7	152	3.448276e-02	1	exome+100bp flanks	34834024	43	147	1.234425e-06	4.220012e-06
TCGA-CV-7090-01A-11D-2012-08	60	58	2	43	3.333333e-02	1	exome+100bp flanks	34834024	14	37	4.019059e-07	1.062180e-06
TCGA-CV-7091-01A-11D-2012-08	164	158	6	123	3.658537e-02	1	exome+100bp flanks	34834024	33	120	9.473496e-07	3.444908e-06
TCGA-CV-7095-01A-21D-2012-08	287	283	4	216	1.393728e-02	0	coding only	34834024	63	209	1.808577e-06	5.999881e-06
TCGA-CV-7097-01A-11D-2012-08	124	116	8	86	6.451613e-02	1	exome+100bp flanks	34834024	28	81	8.038118e-07	2.325313e-06
TCGA-CV-7099-01A-41D-2012-08	360	351	9	259	2.500000e-02	0	coding only	34834024	88	248	2.526266e-06	7.119476e-06
TCGA-CV-7100-01A-11D-2012-08	22	22	0	18	0	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-CV-7101-01A-11D-2012-08	244	235	9	182	3.688525e-02	1	exome+100bp flanks	34834024	53	177	1.521501e-06	5.081239e-06
TCGA-CV-7102-01A-11D-2012-08	170	166	4	131	2.352941e-02	0	coding only	34834024	35	124	1.004765e-06	3.559738e-06
TCGA-CV-7103-01A-21D-2012-08	62	56	6	42	9.677419e-02	1	exome+100bp flanks	34834024	14	40	4.019059e-07	1.148303e-06
TCGA-CV-7104-01A-11D-2012-08	128	121	7	95	5.468750e-02	1	exome+100bp flanks	34834024	26	93	7.463967e-07	2.669804e-06
TCGA-CV-7177-01A-11D-2012-08	149	145	4	111	2.684564e-02	0	coding only	34834024	34	108	9.760572e-07	3.100417e-06
TCGA-CV-7178-01A-21D-2012-08	146	140	6	106	4.109589e-02	1	exome+100bp flanks	34834024	33	103	9.473496e-07	2.956879e-06
TCGA-CV-7180-01A-11D-2012-08	80	78	2	58	2.500000e-02	0	coding only	34834024	19	56	5.454437e-07	1.607624e-06
TCGA-CV-7183-01A-11D-2012-08	81	80	1	62	1.234568e-02	0	coding only	34834024	18	57	5.167362e-07	1.636331e-06
TCGA-CV-7235-01A-11D-2012-08	165	161	4	118	2.424242e-02	0	coding only	34834024	41	111	1.177010e-06	3.186540e-06
TCGA-CV-7236-01A-11D-2012-08	66	65	1	43	1.515152e-02	0	coding only	34834024	21	41	6.028589e-07	1.177010e-06
TCGA-CV-7238-01A-11D-2012-08	85	79	6	58	7.058824e-02	1	exome+100bp flanks	34834024	19	51	5.454437e-07	1.464086e-06
TCGA-CV-7242-01A-11D-2012-08	368	346	22	278	5.978261e-02	1	exome+100bp flanks	34834024	66	267	1.894699e-06	7.664920e-06
TCGA-CV-7243-01A-11D-2012-08	92	88	4	67	4.347826e-02	1	exome+100bp flanks	34834024	19	61	5.454437e-07	1.751161e-06
TCGA-CV-7245-01A-11D-2012-08	607	585	22	448	3.624382e-02	1	exome+100bp flanks	34834024	129	420	3.703276e-06	1.205718e-05
TCGA-CV-7247-01A-11D-2012-08	92	85	7	67	7.608696e-02	1	exome+100bp flanks	34834024	18	65	5.167362e-07	1.865992e-06
TCGA-CV-7248-01A-11D-2012-08	355	337	18	257	5.070423e-02	1	exome+100bp flanks	34834024	77	247	2.210482e-06	7.090768e-06
TCGA-CV-7250-01A-11D-2012-08	254	245	9	178	3.543307e-02	1	exome+100bp flanks	34834024	65	171	1.865992e-06	4.908994e-06
TCGA-CV-7252-01A-11D-2012-08	277	270	7	198	2.527076e-02	0	coding only	34834024	68	182	1.952114e-06	5.224777e-06
TCGA-CV-7253-01A-11D-2012-08	229	219	10	176	4.366812e-02	1	exome+100bp flanks	34834024	42	164	1.205718e-06	4.708041e-06
TCGA-CV-7254-01A-11D-2012-08	309	299	10	231	3.236246e-02	1	exome+100bp flanks	34834024	65	225	1.865992e-06	6.459202e-06
TCGA-CV-7255-01A-11D-2012-08	134	131	3	103	2.238806e-02	0	coding only	34834024	27	99	7.751042e-07	2.842049e-06
TCGA-CV-7261-01A-11D-2012-08	140	136	4	108	2.857143e-02	0	coding only	34834024	27	103	7.751042e-07	2.956879e-06
TCGA-CV-7263-01A-11D-2012-08	131	129	2	107	1.526718e-02	0	coding only	34834024	19	101	5.454437e-07	2.899464e-06
TCGA-CV-7406-01A-11D-2078-08	240	233	7	169	2.916667e-02	0	coding only	34834024	62	161	1.779869e-06	4.621918e-06
TCGA-CV-7407-01A-11D-2078-08	160	153	7	112	4.375000e-02	1	exome+100bp flanks	34834024	38	108	1.090887e-06	3.100417e-06
TCGA-CV-7409-01A-31D-2229-08	373	356	17	282	4.557641e-02	1	exome+100bp flanks	34834024	72	261	2.066945e-06	7.492674e-06
TCGA-CV-7410-01A-21D-2078-08	53	53	0	40	0	0	coding only	34834024	13	35	3.731983e-07	1.004765e-06
TCGA-CV-7411-01A-11D-2078-08	142	140	2	103	1.408451e-02	0	coding only	34834024	35	98	1.004765e-06	2.813341e-06
TCGA-CV-7413-01A-11D-2078-08	94	87	7	65	7.446809e-02	1	exome+100bp flanks	34834024	22	61	6.315664e-07	1.751161e-06
TCGA-CV-7414-01A-11D-2078-08	320	315	5	231	1.562500e-02	0	coding only	34834024	79	224	2.267898e-06	6.430495e-06
TCGA-CV-7415-01A-11D-2078-08	99	98	1	70	1.010101e-02	0	coding only	34834024	25	65	7.176891e-07	1.865992e-06
TCGA-CV-7416-01A-11D-2078-08	96	92	4	69	4.166667e-02	1	exome+100bp flanks	34834024	23	67	6.602740e-07	1.923407e-06
TCGA-CV-7418-01A-11D-2078-08	205	202	3	156	1.463415e-02	0	coding only	34834024	45	142	1.291840e-06	4.076474e-06
TCGA-CV-7421-01A-11D-2078-08	87	84	3	55	3.448276e-02	1	exome+100bp flanks	34834024	28	54	8.038118e-07	1.550208e-06
TCGA-CV-7422-01A-21D-2078-08	168	161	7	118	4.166667e-02	1	exome+100bp flanks	34834024	41	113	1.177010e-06	3.243955e-06
TCGA-CV-7423-01A-11D-2078-08	104	97	7	63	6.730769e-02	1	exome+100bp flanks	34834024	32	54	9.186421e-07	1.550208e-06
TCGA-CV-7424-01A-11D-2078-08	238	230	8	173	3.361345e-02	1	exome+100bp flanks	34834024	53	164	1.521501e-06	4.708041e-06
TCGA-CV-7425-01A-11D-2078-08	149	141	8	102	5.369128e-02	1	exome+100bp flanks	34834024	39	97	1.119595e-06	2.784634e-06
TCGA-CV-7427-01A-11D-2078-08	527	514	13	393	2.466793e-02	0	coding only	34834024	115	379	3.301370e-06	1.088017e-05
TCGA-CV-7429-01A-11D-2129-08	65	64	1	47	1.538462e-02	0	coding only	34834024	14	43	4.019059e-07	1.234425e-06
TCGA-CV-7430-01A-11D-2129-08	132	123	9	93	6.818182e-02	1	exome+100bp flanks	34834024	30	90	8.612269e-07	2.583681e-06
TCGA-CV-7432-01A-11D-2129-08	193	188	5	141	2.590674e-02	0	coding only	34834024	43	135	1.234425e-06	3.875521e-06
TCGA-CV-7433-01A-11D-2129-08	148	143	5	108	3.378378e-02	1	exome+100bp flanks	34834024	34	104	9.760572e-07	2.985587e-06
TCGA-CV-7434-01A-11D-2129-08	114	111	3	86	2.631579e-02	0	coding only	34834024	25	81	7.176891e-07	2.325313e-06
TCGA-CV-7435-01A-11D-2129-08	98	96	2	76	2.040816e-02	0	coding only	34834024	19	70	5.454437e-07	2.009530e-06
TCGA-CV-7437-01A-21D-2129-08	170	166	4	122	2.352941e-02	0	coding only	34834024	43	116	1.234425e-06	3.330078e-06
TCGA-CV-7438-01A-21D-2129-08	121	118	3	88	2.479339e-02	0	coding only	34834024	29	88	8.325194e-07	2.526266e-06
TCGA-CV-7440-01A-11D-2129-08	261	249	12	206	4.597701e-02	1	exome+100bp flanks	34834024	40	195	1.148303e-06	5.597975e-06
TCGA-CV-7446-01A-11D-2229-08	180	173	7	134	3.888889e-02	1	exome+100bp flanks	34834024	39	129	1.119595e-06	3.703276e-06
TCGA-CV-7568-01A-11D-2229-08	2937	2867	70	1919	2.383384e-02	0	coding only	34834024	894	1842	2.566456e-05	5.287933e-05
TCGA-CV-A45O-01A-21D-A24D-08	182	179	3	147	1.648352e-02	0	coding only	34834024	30	138	8.612269e-07	3.961644e-06
TCGA-CV-A45P-01A-11D-A24D-08	201	190	11	140	5.472637e-02	1	exome+100bp flanks	34834024	42	133	1.205718e-06	3.818106e-06
TCGA-CV-A45Q-01A-11D-A24D-08	350	338	12	251	3.428571e-02	1	exome+100bp flanks	34834024	83	235	2.382728e-06	6.746278e-06
TCGA-CV-A45R-01A-11D-A24D-08	110	105	5	79	4.545455e-02	1	exome+100bp flanks	34834024	25	78	7.176891e-07	2.239190e-06
TCGA-CV-A45T-01A-11D-A24D-08	21	18	3	13	1.428571e-01	1	exome+100bp flanks	34834024	5	11	1.435378e-07	3.157832e-07
TCGA-CV-A45U-01A-12D-A24D-08	252	249	3	175	1.190476e-02	0	coding only	34834024	70	166	2.009530e-06	4.765456e-06
TCGA-CV-A45V-01A-21D-A25D-08	132	130	2	97	1.515152e-02	0	coding only	34834024	33	90	9.473496e-07	2.583681e-06
TCGA-CV-A45W-01A-11D-A25D-08	748	708	40	565	5.347594e-02	1	exome+100bp flanks	34834024	137	534	3.932936e-06	1.532984e-05
TCGA-CV-A45X-01A-21D-A25D-08	138	133	5	91	3.623188e-02	1	exome+100bp flanks	34834024	39	87	1.119595e-06	2.497558e-06
TCGA-CV-A45Y-01A-11D-A25D-08	92	91	1	67	1.086957e-02	0	coding only	34834024	23	65	6.602740e-07	1.865992e-06
TCGA-CV-A45Z-01A-21D-A25D-08	858	830	28	640	3.263403e-02	1	exome+100bp flanks	34834024	176	616	5.052531e-06	1.768386e-05
TCGA-CV-A460-01A-21D-A25D-08	82	79	3	64	3.658537e-02	1	exome+100bp flanks	34834024	13	61	3.731983e-07	1.751161e-06
TCGA-CV-A461-01A-41D-A25Y-08	714	697	17	531	2.380952e-02	0	coding only	34834024	158	497	4.535795e-06	1.426766e-05
TCGA-CV-A463-01A-11D-A25Y-08	262	254	8	188	3.053435e-02	1	exome+100bp flanks	34834024	66	179	1.894699e-06	5.138654e-06
TCGA-CV-A464-01A-11D-A25Y-08	37	35	2	20	5.405405e-02	1	exome+100bp flanks	34834024	15	17	4.306135e-07	4.880286e-07
TCGA-CV-A465-01A-11D-A25Y-08	50	47	3	37	6.000000e-02	1	exome+100bp flanks	34834024	9	34	2.583681e-07	9.760572e-07
TCGA-CV-A468-01A-11D-A25Y-08	647	632	15	423	2.318393e-02	0	coding only	34834024	200	401	5.741513e-06	1.151173e-05
TCGA-CV-A6JD-01A-11D-A31L-08	112	110	2	86	1.785714e-02	0	coding only	34834024	22	81	6.315664e-07	2.325313e-06
TCGA-CV-A6JE-01A-11D-A31L-08	167	160	7	124	4.191617e-02	1	exome+100bp flanks	34834024	34	121	9.760572e-07	3.473615e-06
TCGA-CV-A6JM-01A-11D-A31L-08	352	341	11	230	3.125000e-02	1	exome+100bp flanks	34834024	104	216	2.985587e-06	6.200834e-06
TCGA-CV-A6JN-01A-11D-A31L-08	95	93	2	72	2.105263e-02	0	coding only	34834024	20	68	5.741513e-07	1.952114e-06
TCGA-CV-A6JO-01B-11D-A34J-08	96	94	2	72	2.083333e-02	0	coding only	34834024	21	65	6.028589e-07	1.865992e-06
TCGA-CV-A6JT-01A-11D-A31L-08	69	67	2	50	2.898551e-02	0	coding only	34834024	15	47	4.306135e-07	1.349256e-06
TCGA-CV-A6JU-01A-11D-A31L-08	173	163	10	120	5.780347e-02	1	exome+100bp flanks	34834024	41	117	1.177010e-06	3.358785e-06
TCGA-CV-A6JY-01A-11D-A31L-08	116	111	5	89	4.310345e-02	1	exome+100bp flanks	34834024	20	86	5.741513e-07	2.468851e-06
TCGA-CV-A6JZ-01A-11D-A31L-08	141	137	4	101	2.836879e-02	0	coding only	34834024	35	95	1.004765e-06	2.727219e-06
TCGA-CV-A6K0-01B-21D-A31L-08	35	32	3	22	8.571429e-02	1	exome+100bp flanks	34834024	9	21	2.583681e-07	6.028589e-07
TCGA-CV-A6K1-01A-11D-A31L-08	637	605	32	461	5.023548e-02	1	exome+100bp flanks	34834024	135	437	3.875521e-06	1.254521e-05
TCGA-CV-A6K2-01A-11D-A31L-08	849	834	15	601	1.766784e-02	0	coding only	34834024	222	569	6.373079e-06	1.633460e-05
TCGA-CX-7082-01A-11D-2012-08	119	113	6	84	5.042017e-02	1	exome+100bp flanks	34834024	28	80	8.038118e-07	2.296605e-06
TCGA-CX-7085-01A-21D-2012-08	181	175	6	142	3.314917e-02	1	exome+100bp flanks	34834024	32	133	9.186421e-07	3.818106e-06
TCGA-CX-7086-01A-11D-2078-08	285	275	10	212	3.508772e-02	1	exome+100bp flanks	34834024	60	198	1.722454e-06	5.684098e-06
TCGA-CX-7219-01A-11D-2012-08	140	136	4	106	2.857143e-02	0	coding only	34834024	29	97	8.325194e-07	2.784634e-06
TCGA-CX-A4AQ-01A-11D-A25D-08	123	116	7	90	5.691057e-02	1	exome+100bp flanks	34834024	23	89	6.602740e-07	2.554973e-06
TCGA-D6-6515-01A-21D-1870-08	73	71	2	52	2.739726e-02	0	coding only	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-D6-6516-01A-11D-1870-08	2389	2309	80	1528	3.348681e-02	1	exome+100bp flanks	34834024	742	1455	2.130101e-05	4.176951e-05
TCGA-D6-6517-01A-11D-1870-08	88	84	4	65	4.545455e-02	1	exome+100bp flanks	34834024	18	60	5.167362e-07	1.722454e-06
TCGA-D6-6823-01A-11D-1912-08	121	116	5	95	4.132231e-02	1	exome+100bp flanks	34834024	19	87	5.454437e-07	2.497558e-06
TCGA-D6-6824-01A-11D-1912-08	78	75	3	61	3.846154e-02	1	exome+100bp flanks	34834024	13	56	3.731983e-07	1.607624e-06
TCGA-D6-6825-01A-21D-1912-08	87	84	3	60	3.448276e-02	1	exome+100bp flanks	34834024	22	54	6.315664e-07	1.550208e-06
TCGA-D6-6826-01A-11D-1912-08	122	117	5	91	4.098361e-02	1	exome+100bp flanks	34834024	24	89	6.889816e-07	2.554973e-06
TCGA-D6-6827-01A-11D-1912-08	20	19	1	13	5.000000e-02	1	exome+100bp flanks	34834024	6	13	1.722454e-07	3.731983e-07
TCGA-D6-8568-01A-11D-2394-08	125	121	4	100	3.200000e-02	1	exome+100bp flanks	34834024	20	94	5.741513e-07	2.698511e-06
TCGA-D6-8569-01A-11D-2394-08	160	153	7	111	4.375000e-02	1	exome+100bp flanks	34834024	40	108	1.148303e-06	3.100417e-06
TCGA-D6-A4Z9-01A-11D-A25D-08	113	108	5	79	4.424779e-02	1	exome+100bp flanks	34834024	28	72	8.038118e-07	2.066945e-06
TCGA-D6-A4ZB-01A-11D-A25D-08	224	220	4	172	1.785714e-02	0	coding only	34834024	47	164	1.349256e-06	4.708041e-06
TCGA-D6-A6EK-01A-11D-A31L-08	207	196	11	154	5.314010e-02	1	exome+100bp flanks	34834024	41	146	1.177010e-06	4.191304e-06
TCGA-D6-A6EM-01A-21D-A31L-08	118	117	1	94	8.474576e-03	0	coding only	34834024	23	87	6.602740e-07	2.497558e-06
TCGA-D6-A6EN-01A-11D-A31L-08	131	127	4	95	3.053435e-02	1	exome+100bp flanks	34834024	31	90	8.899345e-07	2.583681e-06
TCGA-D6-A6EO-01A-11D-A31L-08	106	100	6	82	5.660377e-02	1	exome+100bp flanks	34834024	17	80	4.880286e-07	2.296605e-06
TCGA-D6-A6EP-01A-11D-A31L-08	146	142	4	111	2.739726e-02	0	coding only	34834024	30	98	8.612269e-07	2.813341e-06
TCGA-D6-A6EQ-01A-11D-A31L-08	115	107	8	80	6.956522e-02	1	exome+100bp flanks	34834024	26	77	7.463967e-07	2.210482e-06
TCGA-D6-A6ES-01A-12D-A31L-08	243	234	9	176	3.703704e-02	1	exome+100bp flanks	34834024	55	165	1.578916e-06	4.736748e-06
TCGA-D6-A74Q-01A-11D-A34J-08	533	513	20	376	3.752345e-02	1	exome+100bp flanks	34834024	131	362	3.760691e-06	1.039214e-05
TCGA-DQ-5624-01A-01D-1870-08	129	124	5	94	3.875969e-02	1	exome+100bp flanks	34834024	27	88	7.751042e-07	2.526266e-06
TCGA-DQ-5625-01A-01D-1870-08	237	227	10	180	4.219409e-02	1	exome+100bp flanks	34834024	45	166	1.291840e-06	4.765456e-06
TCGA-DQ-5629-01A-01D-1870-08	401	385	16	286	3.990025e-02	1	exome+100bp flanks	34834024	92	276	2.641096e-06	7.923288e-06
TCGA-DQ-5630-01A-01D-1870-08	98	93	5	72	5.102041e-02	1	exome+100bp flanks	34834024	18	71	5.167362e-07	2.038237e-06
TCGA-DQ-5631-01A-01D-1870-08	118	115	3	82	2.542373e-02	0	coding only	34834024	31	76	8.899345e-07	2.181775e-06
TCGA-DQ-7588-01A-11D-2078-08	131	124	7	95	5.343511e-02	1	exome+100bp flanks	34834024	28	91	8.038118e-07	2.612388e-06
TCGA-DQ-7589-01A-11D-2229-08	426	405	21	307	4.929577e-02	1	exome+100bp flanks	34834024	96	287	2.755926e-06	8.239071e-06
TCGA-DQ-7590-01A-11D-2229-08	60	55	5	38	8.333333e-02	1	exome+100bp flanks	34834024	15	36	4.306135e-07	1.033472e-06
TCGA-DQ-7591-01A-11D-2078-08	47	44	3	34	6.382979e-02	1	exome+100bp flanks	34834024	8	33	2.296605e-07	9.473496e-07
TCGA-DQ-7592-01A-11D-2078-08	99	91	8	66	8.080808e-02	1	exome+100bp flanks	34834024	25	61	7.176891e-07	1.751161e-06
TCGA-DQ-7593-01A-11D-2229-08	42	37	5	30	1.190476e-01	1	exome+100bp flanks	34834024	6	29	1.722454e-07	8.325194e-07
TCGA-DQ-7594-01A-11D-2229-08	409	392	17	266	4.156479e-02	1	exome+100bp flanks	34834024	123	257	3.531030e-06	7.377844e-06
TCGA-DQ-7595-01A-11D-2229-08	417	394	23	308	5.515588e-02	1	exome+100bp flanks	34834024	81	290	2.325313e-06	8.325194e-06
TCGA-DQ-7596-01A-11D-2229-08	41	39	2	33	4.878049e-02	1	exome+100bp flanks	34834024	5	33	1.435378e-07	9.473496e-07
TCGA-F7-7848-01A-11D-2129-08	394	375	19	277	4.822335e-02	1	exome+100bp flanks	34834024	96	265	2.755926e-06	7.607505e-06
TCGA-F7-8489-01A-31D-2394-08	176	165	11	123	6.250000e-02	1	exome+100bp flanks	34834024	42	117	1.205718e-06	3.358785e-06
TCGA-F7-A50G-01A-11D-A25Y-08	122	115	7	85	5.737705e-02	1	exome+100bp flanks	34834024	29	84	8.325194e-07	2.411435e-06
TCGA-F7-A50I-01A-11D-A28R-08	181	176	5	136	2.762431e-02	0	coding only	34834024	38	135	1.090887e-06	3.875521e-06
TCGA-F7-A50J-01A-21D-A28R-08	220	211	9	153	4.090909e-02	1	exome+100bp flanks	34834024	56	140	1.607624e-06	4.019059e-06
TCGA-F7-A61S-01A-11D-A28R-08	149	143	6	107	4.026846e-02	1	exome+100bp flanks	34834024	32	99	9.186421e-07	2.842049e-06
TCGA-F7-A61V-01A-11D-A28R-08	121	120	1	96	8.264463e-03	0	coding only	34834024	23	92	6.602740e-07	2.641096e-06
TCGA-F7-A61W-01A-11D-A28R-08	85	81	4	61	4.705882e-02	1	exome+100bp flanks	34834024	19	57	5.454437e-07	1.636331e-06
TCGA-F7-A620-01A-11D-A28R-08	93	85	8	54	8.602151e-02	1	exome+100bp flanks	34834024	30	51	8.612269e-07	1.464086e-06
TCGA-F7-A622-01A-11D-A28R-08	85	82	3	63	3.529412e-02	1	exome+100bp flanks	34834024	18	60	5.167362e-07	1.722454e-06
TCGA-F7-A623-01A-11D-A28R-08	248	236	12	168	4.838710e-02	1	exome+100bp flanks	34834024	64	157	1.837284e-06	4.507088e-06
TCGA-F7-A624-01A-22D-A30E-08	4352	4239	113	3159	2.596507e-02	0	coding only	34834024	1016	2997	2.916689e-05	8.603657e-05
TCGA-H7-7774-01A-21D-2078-08	178	175	3	137	1.685393e-02	0	coding only	34834024	38	132	1.090887e-06	3.789399e-06
TCGA-H7-8501-01A-11D-2394-08	186	176	10	137	5.376344e-02	1	exome+100bp flanks	34834024	35	130	1.004765e-06	3.731983e-06
TCGA-H7-A6C4-01A-11D-A30E-08	61	60	1	46	1.639344e-02	0	coding only	34834024	14	44	4.019059e-07	1.263133e-06
TCGA-H7-A6C5-01A-11D-A30E-08	151	144	7	103	4.635762e-02	1	exome+100bp flanks	34834024	38	91	1.090887e-06	2.612388e-06
TCGA-H7-A76A-01A-51D-A34J-08	103	97	6	71	5.825243e-02	1	exome+100bp flanks	34834024	26	68	7.463967e-07	1.952114e-06
TCGA-HD-7229-01A-11D-2012-08	192	187	5	146	2.604167e-02	0	coding only	34834024	37	138	1.062180e-06	3.961644e-06
TCGA-HD-7753-01A-11D-2078-08	122	116	6	96	4.918033e-02	1	exome+100bp flanks	34834024	18	91	5.167362e-07	2.612388e-06
TCGA-HD-7754-01A-11D-2078-08	83	79	4	54	4.819277e-02	1	exome+100bp flanks	34834024	25	51	7.176891e-07	1.464086e-06
TCGA-HD-7831-01A-11D-2129-08	53	49	4	34	7.547170e-02	1	exome+100bp flanks	34834024	15	33	4.306135e-07	9.473496e-07
TCGA-HD-7832-01A-11D-2129-08	124	117	7	85	5.645161e-02	1	exome+100bp flanks	34834024	31	78	8.899345e-07	2.239190e-06
TCGA-HD-7917-01A-11D-2229-08	130	125	5	94	3.846154e-02	1	exome+100bp flanks	34834024	27	91	7.751042e-07	2.612388e-06
TCGA-HD-8224-01A-11D-2394-08	94	90	4	74	4.255319e-02	1	exome+100bp flanks	34834024	16	71	4.593210e-07	2.038237e-06
TCGA-HD-8314-01A-11D-2394-08	86	83	3	62	3.488372e-02	1	exome+100bp flanks	34834024	20	59	5.741513e-07	1.693746e-06
TCGA-HD-8634-01A-11D-2394-08	89	89	0	67	0	0	coding only	34834024	21	62	6.028589e-07	1.779869e-06
TCGA-HD-8635-01A-11D-2394-08	261	253	8	180	3.065134e-02	1	exome+100bp flanks	34834024	68	173	1.952114e-06	4.966409e-06
TCGA-HD-A4C1-01A-11D-A24D-08	250	245	5	175	2.000000e-02	0	coding only	34834024	68	167	1.952114e-06	4.794163e-06
TCGA-HD-A633-01A-11D-A28R-08	169	162	7	123	4.142012e-02	1	exome+100bp flanks	34834024	37	115	1.062180e-06	3.301370e-06
TCGA-HD-A634-01A-11D-A28R-08	62	56	6	38	9.677419e-02	1	exome+100bp flanks	34834024	17	36	4.880286e-07	1.033472e-06
TCGA-HD-A6HZ-01A-12D-A31L-08	121	112	9	79	7.438017e-02	1	exome+100bp flanks	34834024	33	74	9.473496e-07	2.124360e-06
TCGA-HD-A6I0-01A-11D-A31L-08	99	94	5	74	5.050505e-02	1	exome+100bp flanks	34834024	20	71	5.741513e-07	2.038237e-06
TCGA-HL-7533-01A-11D-2229-08	953	936	17	690	1.783841e-02	0	coding only	34834024	228	649	6.545325e-06	1.863121e-05
TCGA-IQ-7630-01A-11D-2078-08	160	151	9	113	5.625000e-02	1	exome+100bp flanks	34834024	36	106	1.033472e-06	3.043002e-06
TCGA-IQ-7631-01A-11D-2078-08	40	39	1	23	2.500000e-02	1	exome+100bp flanks	34834024	14	21	4.019059e-07	6.028589e-07
TCGA-IQ-7632-01A-11D-2078-08	64	64	0	46	0	0	coding only	34834024	15	42	4.306135e-07	1.205718e-06
TCGA-IQ-A61E-01A-22D-A30E-08	248	242	6	176	2.419355e-02	0	coding only	34834024	63	166	1.808577e-06	4.765456e-06
TCGA-IQ-A61G-01A-11D-A30E-08	181	176	5	131	2.762431e-02	0	coding only	34834024	43	119	1.234425e-06	3.416200e-06
TCGA-IQ-A61H-01A-11D-A30E-08	191	183	8	139	4.188482e-02	1	exome+100bp flanks	34834024	44	129	1.263133e-06	3.703276e-06
TCGA-IQ-A61I-01A-11D-A30E-08	181	174	7	125	3.867403e-02	1	exome+100bp flanks	34834024	45	116	1.291840e-06	3.330078e-06
TCGA-IQ-A61J-01A-11D-A30E-08	70	64	6	48	8.571429e-02	1	exome+100bp flanks	34834024	15	46	4.306135e-07	1.320548e-06
TCGA-IQ-A61K-01A-11D-A30E-08	99	94	5	70	5.050505e-02	1	exome+100bp flanks	34834024	24	68	6.889816e-07	1.952114e-06
TCGA-IQ-A61L-01A-11D-A30E-08	122	120	2	91	1.639344e-02	0	coding only	34834024	25	85	7.176891e-07	2.440143e-06
TCGA-IQ-A61O-01A-11D-A30E-08	68	63	5	45	7.352941e-02	1	exome+100bp flanks	34834024	16	44	4.593210e-07	1.263133e-06
TCGA-IQ-A6SG-01A-12D-A34J-08	131	126	5	94	3.816794e-02	1	exome+100bp flanks	34834024	29	89	8.325194e-07	2.554973e-06
TCGA-IQ-A6SH-01A-12D-A34J-08	110	102	8	72	7.272727e-02	1	exome+100bp flanks	34834024	28	66	8.038118e-07	1.894699e-06
TCGA-KU-A66S-01A-21D-A30E-08	666	646	20	513	3.003003e-02	1	exome+100bp flanks	34834024	125	492	3.588446e-06	1.412412e-05
TCGA-KU-A66T-01A-11D-A30E-08	141	136	5	103	3.546099e-02	1	exome+100bp flanks	34834024	30	101	8.612269e-07	2.899464e-06
TCGA-KU-A6H7-01A-11D-A31L-08	207	204	3	151	1.449275e-02	0	coding only	34834024	50	143	1.435378e-06	4.105182e-06
TCGA-KU-A6H8-01A-21D-A34J-08	40	39	1	32	2.500000e-02	1	exome+100bp flanks	34834024	7	30	2.009530e-07	8.612269e-07
TCGA-MT-A51W-01A-21D-A25Y-08	88	81	7	64	7.954545e-02	1	exome+100bp flanks	34834024	16	62	4.593210e-07	1.779869e-06
TCGA-MT-A51X-01A-11D-A25Y-08	71	65	6	45	8.450704e-02	1	exome+100bp flanks	34834024	19	43	5.454437e-07	1.234425e-06
TCGA-MT-A67A-01A-11D-A30E-08	150	145	5	112	3.333333e-02	1	exome+100bp flanks	34834024	31	103	8.899345e-07	2.956879e-06
TCGA-MT-A67D-01A-31D-A30E-08	146	137	9	102	6.164384e-02	1	exome+100bp flanks	34834024	32	100	9.186421e-07	2.870756e-06
TCGA-MT-A67F-01A-11D-A30E-08	387	375	12	296	3.100775e-02	1	exome+100bp flanks	34834024	75	278	2.153067e-06	7.980703e-06
TCGA-MT-A67G-01A-11D-A30E-08	90	86	4	63	4.444444e-02	1	exome+100bp flanks	34834024	20	61	5.741513e-07	1.751161e-06
TCGA-MT-A7BN-01A-12D-A34J-08	78	73	5	57	6.410256e-02	1	exome+100bp flanks	34834024	15	53	4.306135e-07	1.521501e-06
TCGA-MZ-A5BI-01A-31D-A34J-08	57	52	5	42	8.771930e-02	1	exome+100bp flanks	34834024	9	41	2.583681e-07	1.177010e-06
TCGA-MZ-A6I9-01A-11D-A31L-08	64	62	2	41	3.125000e-02	1	exome+100bp flanks	34834024	19	37	5.454437e-07	1.062180e-06
TCGA-MZ-A7D7-01A-21D-A34J-08	217	216	1	148	4.608295e-03	0	coding only	34834024	60	142	1.722454e-06	4.076474e-06
TCGA-P3-A5Q6-01A-11D-A28R-08	158	151	7	112	4.430380e-02	1	exome+100bp flanks	34834024	37	105	1.062180e-06	3.014294e-06
TCGA-P3-A5QA-01A-11D-A28R-08	95	92	3	73	3.157895e-02	1	exome+100bp flanks	34834024	19	71	5.454437e-07	2.038237e-06
TCGA-P3-A5QE-01A-11D-A28R-08	58	54	4	41	6.896552e-02	1	exome+100bp flanks	34834024	13	40	3.731983e-07	1.148303e-06
TCGA-P3-A5QF-01A-11D-A28R-08	480	462	18	340	3.750000e-02	1	exome+100bp flanks	34834024	116	318	3.330078e-06	9.129006e-06
TCGA-P3-A6SW-01A-11D-A34J-08	125	122	3	92	2.400000e-02	0	coding only	34834024	29	89	8.325194e-07	2.554973e-06
TCGA-P3-A6SX-01A-11D-A34J-08	217	208	9	166	4.147465e-02	1	exome+100bp flanks	34834024	42	156	1.205718e-06	4.478380e-06
TCGA-P3-A6T0-01A-12D-A34J-08	115	109	6	82	5.217391e-02	1	exome+100bp flanks	34834024	27	76	7.751042e-07	2.181775e-06
TCGA-P3-A6T2-01A-11D-A34J-08	82	76	6	49	7.317073e-02	1	exome+100bp flanks	34834024	26	45	7.463967e-07	1.291840e-06
TCGA-P3-A6T3-01A-11D-A34J-08	141	139	2	109	1.418440e-02	0	coding only	34834024	28	102	8.038118e-07	2.928172e-06
TCGA-P3-A6T4-01A-11D-A34J-08	197	195	2	148	1.015228e-02	0	coding only	34834024	46	136	1.320548e-06	3.904229e-06
TCGA-P3-A6T5-01A-11D-A34J-08	306	295	11	207	3.594771e-02	1	exome+100bp flanks	34834024	83	194	2.382728e-06	5.569268e-06
TCGA-P3-A6T6-01A-11D-A34J-08	160	156	4	123	2.500000e-02	0	coding only	34834024	32	121	9.186421e-07	3.473615e-06
TCGA-P3-A6T7-01A-11D-A34J-08	178	170	8	129	4.494382e-02	1	exome+100bp flanks	34834024	36	126	1.033472e-06	3.617153e-06
TCGA-P3-A6T8-01A-11D-A34J-08	107	103	4	83	3.738318e-02	1	exome+100bp flanks	34834024	19	77	5.454437e-07	2.210482e-06
TCGA-QK-A64Z-01A-11D-A30E-08	112	111	1	74	8.928571e-03	0	coding only	34834024	34	68	9.760572e-07	1.952114e-06
TCGA-QK-A652-01A-11D-A30E-08	63	59	4	49	6.349206e-02	1	exome+100bp flanks	34834024	9	45	2.583681e-07	1.291840e-06
TCGA-QK-A6IF-01A-11D-A31L-08	39	35	4	25	1.025641e-01	1	exome+100bp flanks	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-QK-A6IG-01A-11D-A31L-08	145	142	3	114	2.068966e-02	0	coding only	34834024	26	106	7.463967e-07	3.043002e-06
TCGA-QK-A6IH-01A-11D-A31L-08	84	83	1	66	1.190476e-02	0	coding only	34834024	17	64	4.880286e-07	1.837284e-06
TCGA-QK-A6II-01A-11D-A31L-08	211	202	9	151	4.265403e-02	1	exome+100bp flanks	34834024	46	141	1.320548e-06	4.047767e-06
TCGA-QK-A6IJ-01A-11D-A31L-08	103	100	3	73	2.912621e-02	0	coding only	34834024	26	71	7.463967e-07	2.038237e-06
TCGA-QK-A6V9-01A-11D-A34J-08	110	106	4	76	3.636364e-02	1	exome+100bp flanks	34834024	30	69	8.612269e-07	1.980822e-06
TCGA-QK-A6VB-01A-12D-A34J-08	617	593	24	472	3.889789e-02	1	exome+100bp flanks	34834024	117	440	3.358785e-06	1.263133e-05
TCGA-QK-A6VC-01A-23D-A34J-08	258	254	4	195	1.550388e-02	0	coding only	34834024	58	185	1.665039e-06	5.310899e-06
TCGA-RS-A6TO-01A-32D-A34J-08	225	219	6	160	2.666667e-02	0	coding only	34834024	57	154	1.636331e-06	4.420965e-06
TCGA-RS-A6TP-01A-12D-A34J-08	174	163	11	118	6.321839e-02	1	exome+100bp flanks	34834024	41	108	1.177010e-06	3.100417e-06
TCGA-T2-A6WX-01A-12D-A34J-08	247	239	8	177	3.238866e-02	1	exome+100bp flanks	34834024	59	169	1.693746e-06	4.851578e-06
TCGA-T2-A6WZ-01A-21D-A34J-08	132	127	5	92	3.787879e-02	1	exome+100bp flanks	34834024	33	89	9.473496e-07	2.554973e-06
TCGA-T2-A6X0-01A-11D-A34J-08	84	79	5	56	5.952381e-02	1	exome+100bp flanks	34834024	22	55	6.315664e-07	1.578916e-06
TCGA-T2-A6X2-01A-12D-A34J-08	441	431	10	329	2.267574e-02	0	coding only	34834024	99	316	2.842049e-06	9.071590e-06
TCGA-TN-A7HI-01A-11D-A34J-08	78	73	5	60	6.410256e-02	1	exome+100bp flanks	34834024	10	57	2.870756e-07	1.636331e-06
TCGA-TN-A7HJ-01A-12D-A34J-08	150	143	7	112	4.666667e-02	1	exome+100bp flanks	34834024	30	108	8.612269e-07	3.100417e-06
TCGA-TN-A7HL-01A-11D-A34J-08	770	747	23	547	2.987013e-02	0	coding only	34834024	194	514	5.569268e-06	1.475569e-05
TCGA-UF-A718-01A-22D-A34J-08	87	81	6	65	6.896552e-02	1	exome+100bp flanks	34834024	15	62	4.306135e-07	1.779869e-06
TCGA-UF-A719-01A-12D-A34J-08	160	157	3	124	1.875000e-02	0	coding only	34834024	30	118	8.612269e-07	3.387493e-06
TCGA-UF-A71A-01A-22D-A34J-08	254	245	9	181	3.543307e-02	1	exome+100bp flanks	34834024	60	172	1.722454e-06	4.937701e-06
TCGA-UF-A71B-01A-12D-A34J-08	197	189	8	136	4.060914e-02	1	exome+100bp flanks	34834024	50	124	1.435378e-06	3.559738e-06
TCGA-UF-A71D-01A-12D-A34J-08	560	540	20	400	3.571429e-02	1	exome+100bp flanks	34834024	130	380	3.731983e-06	1.090887e-05
TCGA-UF-A71E-01A-31D-A34J-08	206	201	5	142	2.427184e-02	0	coding only	34834024	55	133	1.578916e-06	3.818106e-06
TCGA-UF-A7J9-01A-12D-A34J-08	311	302	9	228	2.893891e-02	0	coding only	34834024	69	220	1.980822e-06	6.315664e-06
TCGA-UF-A7JA-01A-12D-A34J-08	298	288	10	226	3.355705e-02	1	exome+100bp flanks	34834024	57	215	1.636331e-06	6.172126e-06
TCGA-UF-A7JC-01A-21D-A34J-08	69	65	4	52	5.797101e-02	1	exome+100bp flanks	34834024	9	45	2.583681e-07	1.291840e-06
TCGA-UF-A7JD-01A-11D-A34J-08	146	137	9	104	6.164384e-02	1	exome+100bp flanks	34834024	32	98	9.186421e-07	2.813341e-06
TCGA-UF-A7JF-01A-11D-A34J-08	142	126	16	93	1.126761e-01	1	exome+100bp flanks	34834024	30	89	8.612269e-07	2.554973e-06
TCGA-UF-A7JH-01A-21D-A34J-08	101	96	5	71	4.950495e-02	1	exome+100bp flanks	34834024	22	65	6.315664e-07	1.865992e-06
TCGA-UF-A7JJ-01A-11D-A34J-08	126	117	9	94	7.142857e-02	1	exome+100bp flanks	34834024	23	89	6.602740e-07	2.554973e-06
TCGA-UF-A7JK-01A-11D-A34J-08	146	142	4	99	2.739726e-02	0	coding only	34834024	41	98	1.177010e-06	2.813341e-06
TCGA-UF-A7JO-01A-11D-A34J-08	224	218	6	159	2.678571e-02	0	coding only	34834024	58	153	1.665039e-06	4.392257e-06
TCGA-UF-A7JS-01A-11D-A34J-08	91	83	8	60	8.791209e-02	1	exome+100bp flanks	34834024	22	58	6.315664e-07	1.665039e-06
TCGA-UF-A7JT-01A-11D-A34J-08	245	237	8	173	3.265306e-02	1	exome+100bp flanks	34834024	62	161	1.779869e-06	4.621918e-06
TCGA-UF-A7JV-01A-11D-A34J-08	109	106	3	79	2.752294e-02	0	coding only	34834024	27	76	7.751042e-07	2.181775e-06
TCGA-UP-A6WW-01A-12D-A34J-08	52	50	2	37	3.846154e-02	1	exome+100bp flanks	34834024	13	35	3.731983e-07	1.004765e-06
TCGA-WA-A7GZ-01A-11D-A34J-08	269	257	12	192	4.460967e-02	1	exome+100bp flanks	34834024	62	180	1.779869e-06	5.167362e-06
TCGA-WA-A7H4-01A-21D-A34J-08	108	102	6	83	5.555556e-02	1	exome+100bp flanks	34834024	19	81	5.454437e-07	2.325313e-06