Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	3 (2%)	188	0.00441	0.0207	0.20902	0.349	0.18466	0.326	0.59196	0.733	0.091069	0.185	0.092699	0.185
4p gain	4 (2%)	187	0.02944	0.0795	0.0075499	0.0274	NA	NA	NA	NA	0.34201	0.501	0.83687	0.962
4q gain	4 (2%)	187	0.02919	0.0795	0.0073999	0.0273	NA	NA	NA	NA	0.34197	0.501	0.83262	0.962
8p gain	22 (12%)	169	0.00090999	0.00793	0.00025	0.0032	0.02867	0.0795	0.00083999	0.00793	0.0098099	0.0349	0.01631	0.0497
8q gain	23 (12%)	168	0.00147	0.0101	0.00039	0.00452	0.01348	0.0454	0.00184	0.0112	0.0071099	0.0268	0.01455	0.0462
10q gain	3 (2%)	188	0.01478	0.0462	0.21026	0.349	0.18443	0.326	0.58967	0.733	0.55248	0.707	0.092359	0.185
11p gain	4 (2%)	187	0.00069999	0.00747	0.43039	0.597	0.46516	0.625	0.36875	0.533	0.52267	0.682	0.02211	0.0643
11q gain	7 (4%)	184	9.9999e-06	0.00024	0.02983	0.0795	0.066709	0.147	0.073609	0.159	0.2909	0.443	0.01491	0.0462
13q gain	6 (3%)	185	0.04183	0.106	0.0065499	0.0259	0.1242	0.238	0.084469	0.178	0.80129	0.932	0.073579	0.159
17q gain	3 (2%)	188	0.0062599	0.0257	0.70202	0.837	1	1	0.59138	0.733	0.48238	0.634	0.30352	0.459
19p gain	5 (3%)	186	0.01414	0.0462	0.2486	0.386	1	1	0.86681	0.962	0.58072	0.733	1	1
19q gain	5 (3%)	186	0.01263	0.0441	0.24811	0.386	1	1	0.86406	0.962	0.57809	0.733	1	1
21q gain	8 (4%)	183	9.9999e-06	0.00024	0.11164	0.218	0.12549	0.239	0.52537	0.682	0.082929	0.177	0.41247	0.582
22q gain	9 (5%)	182	0.00094999	0.00793	0.00425	0.0204	0.13689	0.258	0.01679	0.0504	0.056179	0.132	0.01318	0.0452
xp gain	3 (2%)	188	0.00183	0.0112	0.69933	0.837	NA	NA	NA	NA	0.89151	0.978	0.0468	0.115
xq gain	3 (2%)	188	0.00159	0.0105	0.70109	0.837	NA	NA	NA	NA	0.89133	0.978	0.04687	0.115
3p loss	3 (2%)	188	0.0066199	0.0259	0.21062	0.349	0.78761	0.923	1	1	0.061069	0.141	0.092599	0.185
3q loss	3 (2%)	188	0.0062999	0.0257	0.20969	0.349	0.7882	0.923	1	1	0.062249	0.142	0.092209	0.185
5q loss	6 (3%)	185	9.9999e-06	0.00024	0.0068199	0.0262	0.22572	0.364	0.63273	0.769	0.03119	0.082	0.03269	0.0848
7p loss	17 (9%)	174	4e-05	0.000698	0.00016	0.00236	0.00094999	0.00793	9.9999e-06	0.00024	0.00358	0.0181	0.00339	0.0181
7q loss	20 (10%)	171	9.9999e-06	0.00024	2e-05	0.000427	0.0058499	0.0252	9.9999e-06	0.00024	0.00143	0.0101	0.00083999	0.00793
12p loss	4 (2%)	187	0.0059099	0.0252	0.43083	0.597	0.37555	0.538	0.38965	0.554	0.48065	0.634	0.18649	0.326
15q loss	4 (2%)	187	4e-04	0.00452	0.55014	0.707	0.066189	0.147	0.3689	0.533	0.02283	0.0645	0.18552	0.326
16q loss	4 (2%)	187	0.00108	0.00864	0.055649	0.132	0.78509	0.923	1	1	0.0145	0.0462	0.02244	0.0643
17p loss	13 (7%)	178	9.9999e-06	0.00024	0.00187	0.0112	0.15657	0.292	0.00138	0.0101	0.16056	0.296	0.00385	0.019
17q loss	7 (4%)	184	9.9999e-06	0.00024	0.11235	0.218	0.066679	0.147	0.23443	0.375	0.03747	0.0959	0.04915	0.119
18p loss	5 (3%)	186	0.00018	0.00247	0.02075	0.0613	1	1	0.86416	0.962	0.24936	0.386	0.18511	0.326
18q loss	4 (2%)	187	0.00118	0.00906	0.056559	0.132	0.46744	0.625	0.86525	0.962	0.10083	0.2	0.18316	0.326
19p loss	4 (2%)	187	0.00318	0.018	0.43189	0.597	0.46894	0.625	0.86378	0.962	0.30995	0.464	0.24625	0.386
19q loss	4 (2%)	187	0.003	0.0175	0.43587	0.598	0.46767	0.625	0.86284	0.962	0.31143	0.464	0.25159	0.386
xp loss	5 (3%)	186	0.00012	0.00192	0.19936	0.345	0.22444	0.364	0.63074	0.769	0.00353	0.0181	0.0050099	0.0224
xq loss	5 (3%)	186	4e-05	0.000698	0.20141	0.345	0.22435	0.364	0.63124	0.769	0.0033	0.0181	0.0048	0.0219