This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 62 focal events and 8 molecular subtypes across 370 patients, 288 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1p22.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_1q22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_1q42.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_2p24.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_2q33.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_3q26.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_4p14 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_5p15.33 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_5q35.3 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_6p25.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_6p21.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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amp_6q12 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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amp_6q12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_7q31.2 cnv correlated to 'METHLYATION_CNMF'.
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amp_8q13.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8q24.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_9q34.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_11q13.3 cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_13q32.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_13q33.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_15q26.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_17p11.2 cnv correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.
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amp_17q25.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19p13.12 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19q12 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19q13.11 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_20q13.13 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_20q13.33 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_xq28 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p36.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p36.11 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2q22.1 cnv correlated to 'MRNASEQ_CNMF'.
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del_2q37.3 cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p13 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4p16.3 cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q22.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q35.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q27 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_8p23.2 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_8p12 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_9q31.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q23.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q26.13 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11q14.1 cnv correlated to 'CN_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11q24.2 cnv correlated to 'CN_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_12p12.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_12q24.33 cnv correlated to 'CN_CNMF'.
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del_13q14.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_14q23.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_14q32.33 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_15q26.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_16q23.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17p13.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17p11.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_18q21.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_19p13.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_20p12.1 cnv correlated to 'CN_CNMF'.
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del_22q12.1 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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del_22q13.32 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_xq26.2 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 62 focal events and 8 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 288 significant findings detected.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 17q25 3 | 145 (39%) | 225 |
1e-05 (8.41e-05) |
0.0194 (0.0403) |
0.00122 (0.00445) |
0.0108 (0.0248) |
0.00092 (0.00346) |
0.00145 (0.00503) |
0.0251 (0.0501) |
0.015 (0.0324) |
amp xq28 | 85 (23%) | 285 |
8e-05 (0.000467) |
0.0288 (0.0563) |
0.0406 (0.0728) |
0.017 (0.0359) |
0.0095 (0.0227) |
0.00474 (0.013) |
0.0457 (0.0801) |
0.00039 (0.00168) |
del 1p36 11 | 142 (38%) | 228 |
5e-05 (0.000331) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.00189 (0.00609) |
0.00011 (0.000613) |
0.00027 (0.00128) |
0.00026 (0.00125) |
del 3p13 | 73 (20%) | 297 |
0.00561 (0.015) |
0.0454 (0.0801) |
0.00013 (0.000693) |
1e-05 (8.41e-05) |
0.00137 (0.00489) |
0.0341 (0.0636) |
0.0003 (0.00138) |
0.00214 (0.00668) |
del 10q23 31 | 97 (26%) | 273 |
0.0309 (0.059) |
0.0136 (0.0298) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.0314 (0.0594) |
1e-05 (8.41e-05) |
0.0496 (0.0854) |
1e-05 (8.41e-05) |
amp 3q26 31 | 77 (21%) | 293 |
0.0003 (0.00138) |
0.0328 (0.0617) |
0.00666 (0.0176) |
0.0198 (0.0409) |
0.0746 (0.118) |
0.00459 (0.0126) |
0.0407 (0.0728) |
0.0226 (0.0457) |
amp 8q24 21 | 231 (62%) | 139 |
1e-05 (8.41e-05) |
0.00768 (0.0196) |
2e-05 (0.000153) |
1e-05 (8.41e-05) |
0.0151 (0.0326) |
0.00707 (0.0183) |
0.0832 (0.129) |
2e-05 (0.000153) |
amp 19p13 12 | 69 (19%) | 301 |
0.08 (0.125) |
0.00012 (0.000654) |
0.0001 (0.000564) |
0.0005 (0.002) |
9e-05 (0.000513) |
0.00236 (0.00723) |
0.00048 (0.00197) |
0.00141 (0.00493) |
amp 19q12 | 78 (21%) | 292 |
0.0549 (0.092) |
0.00236 (0.00723) |
0.0014 (0.00493) |
0.00146 (0.00503) |
0.00118 (0.00434) |
0.0115 (0.0262) |
0.00042 (0.00177) |
0.00202 (0.00638) |
amp 19q13 11 | 91 (25%) | 279 |
0.0309 (0.059) |
0.0724 (0.115) |
0.00092 (0.00346) |
0.00074 (0.00285) |
0.00749 (0.0192) |
0.00184 (0.00596) |
1e-05 (8.41e-05) |
0.00048 (0.00197) |
del 1p36 31 | 162 (44%) | 208 |
0.00156 (0.0053) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.0528 (0.0895) |
0.00127 (0.00456) |
0.0123 (0.0276) |
0.00989 (0.0231) |
del 4q21 3 | 171 (46%) | 199 |
1e-05 (8.41e-05) |
0.00254 (0.00764) |
1e-05 (8.41e-05) |
0.00024 (0.00118) |
0.19 (0.25) |
0.00169 (0.0057) |
3e-05 (0.000213) |
0.0004 (0.0017) |
del 4q22 3 | 172 (46%) | 198 |
1e-05 (8.41e-05) |
0.00376 (0.0107) |
1e-05 (8.41e-05) |
0.00015 (0.000783) |
0.209 (0.265) |
0.00124 (0.00449) |
0.00013 (0.000693) |
0.00049 (0.00199) |
del 4q35 1 | 172 (46%) | 198 |
1e-05 (8.41e-05) |
0.00026 (0.00125) |
1e-05 (8.41e-05) |
0.00064 (0.0025) |
0.155 (0.215) |
0.00625 (0.0166) |
0.00027 (0.00128) |
0.00495 (0.0134) |
del 9p21 3 | 150 (41%) | 220 |
3e-05 (0.000213) |
0.00848 (0.021) |
1e-05 (8.41e-05) |
0.00175 (0.00578) |
0.265 (0.322) |
0.00173 (0.00576) |
0.0189 (0.0393) |
0.00792 (0.02) |
del 16q23 1 | 162 (44%) | 208 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.707 (0.743) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
4e-05 (0.000272) |
del 17p13 1 | 226 (61%) | 144 |
1e-05 (8.41e-05) |
0.0203 (0.0417) |
6e-05 (0.000372) |
5e-05 (0.000331) |
0.00176 (0.00578) |
7e-05 (0.000418) |
0.626 (0.677) |
2e-05 (0.000153) |
amp 4p14 | 54 (15%) | 316 |
0.00347 (0.01) |
0.0269 (0.0527) |
6e-05 (0.000372) |
0.00089 (0.0034) |
0.187 (0.247) |
0.0546 (0.0918) |
0.01 (0.0233) |
0.0169 (0.0359) |
amp 8q13 3 | 207 (56%) | 163 |
1e-05 (8.41e-05) |
0.146 (0.206) |
6e-05 (0.000372) |
4e-05 (0.000272) |
0.0972 (0.148) |
0.00247 (0.00747) |
0.0388 (0.0708) |
3e-05 (0.000213) |
del 9q31 3 | 119 (32%) | 251 |
0.00205 (0.00644) |
0.0142 (0.0311) |
0.00285 (0.00841) |
0.00034 (0.00151) |
0.16 (0.219) |
0.0069 (0.0181) |
0.0658 (0.107) |
0.00022 (0.0011) |
del 10q26 13 | 105 (28%) | 265 |
0.00864 (0.0212) |
0.048 (0.0833) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.135 (0.193) |
2e-05 (0.000153) |
0.203 (0.261) |
1e-05 (8.41e-05) |
del 13q14 2 | 179 (48%) | 191 |
1e-05 (8.41e-05) |
0.0765 (0.12) |
0.00032 (0.00143) |
1e-05 (8.41e-05) |
0.00233 (0.00722) |
0.00067 (0.0026) |
0.101 (0.151) |
4e-05 (0.000272) |
del 17p11 2 | 195 (53%) | 175 |
1e-05 (8.41e-05) |
0.154 (0.214) |
0.00173 (0.00576) |
0.00843 (0.021) |
7e-05 (0.000418) |
0.00023 (0.00114) |
0.277 (0.334) |
0.00031 (0.0014) |
amp 1q22 | 283 (76%) | 87 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
7e-05 (0.000418) |
0.00328 (0.00957) |
0.827 (0.854) |
0.0131 (0.0291) |
0.207 (0.265) |
0.305 (0.364) |
amp 1q42 3 | 270 (73%) | 100 |
1e-05 (8.41e-05) |
8e-05 (0.000467) |
1e-05 (8.41e-05) |
0.00102 (0.00378) |
0.494 (0.556) |
0.0377 (0.0693) |
0.392 (0.451) |
0.558 (0.612) |
amp 6q12 | 83 (22%) | 287 |
1e-05 (8.41e-05) |
0.00789 (0.02) |
0.00865 (0.0212) |
0.00937 (0.0226) |
0.879 (0.899) |
0.55 (0.605) |
0.00424 (0.0118) |
0.0708 (0.113) |
amp 11q13 3 | 57 (15%) | 313 |
0.31 (0.369) |
0.617 (0.67) |
0.00823 (0.0207) |
0.0177 (0.0372) |
0.00826 (0.0207) |
0.00331 (0.0096) |
0.216 (0.273) |
0.00019 (0.000982) |
amp 20q13 13 | 124 (34%) | 246 |
1e-05 (8.41e-05) |
0.367 (0.428) |
0.0323 (0.0609) |
0.00031 (0.0014) |
0.109 (0.161) |
0.0117 (0.0265) |
2e-05 (0.000153) |
0.061 (0.1) |
del 2q37 3 | 62 (17%) | 308 |
0.106 (0.158) |
0.706 (0.743) |
1e-05 (8.41e-05) |
0.00096 (0.00358) |
0.0384 (0.0703) |
0.0097 (0.0228) |
0.234 (0.291) |
0.00156 (0.0053) |
del 14q32 33 | 132 (36%) | 238 |
1e-05 (8.41e-05) |
0.115 (0.168) |
0.00035 (0.00154) |
0.00012 (0.000654) |
0.756 (0.787) |
0.241 (0.3) |
0.0143 (0.0312) |
0.0311 (0.0591) |
del 19p13 3 | 87 (24%) | 283 |
1e-05 (8.41e-05) |
0.428 (0.487) |
0.00029 (0.00136) |
0.00238 (0.00724) |
0.403 (0.462) |
0.13 (0.186) |
0.0211 (0.0431) |
0.00264 (0.00789) |
amp 1p22 3 | 89 (24%) | 281 |
1e-05 (8.41e-05) |
0.00268 (0.00796) |
0.052 (0.0886) |
0.0456 (0.0801) |
0.521 (0.58) |
0.945 (0.952) |
0.00904 (0.022) |
0.148 (0.207) |
amp 6p25 2 | 159 (43%) | 211 |
1e-05 (8.41e-05) |
9e-05 (0.000513) |
0.0169 (0.0359) |
0.024 (0.0484) |
0.667 (0.712) |
0.0627 (0.103) |
0.21 (0.267) |
0.397 (0.456) |
amp 9q34 2 | 47 (13%) | 323 |
0.0302 (0.0583) |
0.167 (0.226) |
0.0307 (0.059) |
0.0923 (0.141) |
0.0581 (0.0967) |
0.0128 (0.0287) |
0.327 (0.386) |
0.0132 (0.0291) |
amp 13q32 3 | 67 (18%) | 303 |
1e-05 (8.41e-05) |
0.0541 (0.0913) |
0.0158 (0.0339) |
0.0816 (0.127) |
0.167 (0.226) |
0.2 (0.259) |
0.013 (0.0289) |
0.0187 (0.0391) |
amp 13q33 3 | 67 (18%) | 303 |
1e-05 (8.41e-05) |
0.0217 (0.0442) |
0.00401 (0.0114) |
0.247 (0.306) |
0.155 (0.215) |
0.18 (0.241) |
0.0715 (0.114) |
0.0485 (0.0839) |
amp 20q13 33 | 128 (35%) | 242 |
1e-05 (8.41e-05) |
0.0706 (0.113) |
0.00699 (0.0182) |
3e-05 (0.000213) |
0.19 (0.25) |
0.0609 (0.1) |
2e-05 (0.000153) |
0.122 (0.176) |
del 4p16 3 | 85 (23%) | 285 |
1e-05 (8.41e-05) |
0.102 (0.152) |
0.197 (0.256) |
0.102 (0.152) |
0.706 (0.743) |
0.0267 (0.0527) |
0.0459 (0.0802) |
0.00702 (0.0182) |
del 14q23 3 | 131 (35%) | 239 |
1e-05 (8.41e-05) |
0.376 (0.437) |
0.00015 (0.000783) |
6e-05 (0.000372) |
0.872 (0.894) |
0.098 (0.148) |
0.00621 (0.0166) |
0.0605 (0.1) |
del 15q26 3 | 79 (21%) | 291 |
0.0353 (0.0656) |
0.249 (0.309) |
0.00422 (0.0118) |
0.00896 (0.0219) |
0.353 (0.413) |
0.117 (0.17) |
0.00141 (0.00493) |
0.0689 (0.111) |
amp 2p24 1 | 65 (18%) | 305 |
0.00476 (0.013) |
0.542 (0.599) |
0.145 (0.205) |
0.00404 (0.0114) |
0.478 (0.54) |
0.0432 (0.077) |
0.142 (0.202) |
0.0909 (0.14) |
amp 2q33 1 | 64 (17%) | 306 |
0.00362 (0.0104) |
0.584 (0.637) |
0.0512 (0.0879) |
0.0117 (0.0265) |
0.278 (0.334) |
0.12 (0.173) |
0.00036 (0.00157) |
0.172 (0.231) |
amp 5p15 33 | 163 (44%) | 207 |
1e-05 (8.41e-05) |
0.0371 (0.0687) |
0.223 (0.28) |
0.604 (0.657) |
0.0765 (0.12) |
0.0162 (0.0346) |
0.0928 (0.142) |
0.167 (0.226) |
amp 6p21 1 | 158 (43%) | 212 |
1e-05 (8.41e-05) |
0.0004 (0.0017) |
0.0107 (0.0248) |
0.0654 (0.107) |
0.115 (0.168) |
0.0643 (0.105) |
0.275 (0.333) |
0.503 (0.563) |
amp 6q12 | 109 (29%) | 261 |
1e-05 (8.41e-05) |
0.0529 (0.0895) |
0.0377 (0.0693) |
0.109 (0.161) |
0.458 (0.519) |
0.618 (0.67) |
0.00969 (0.0228) |
0.15 (0.209) |
amp 15q26 3 | 54 (15%) | 316 |
0.0257 (0.0509) |
0.201 (0.26) |
0.04 (0.0721) |
0.0392 (0.0712) |
0.84 (0.866) |
0.182 (0.242) |
0.299 (0.358) |
0.42 (0.478) |
del 6q27 | 136 (37%) | 234 |
0.00951 (0.0227) |
0.0269 (0.0527) |
0.687 (0.73) |
0.481 (0.542) |
0.648 (0.696) |
0.0399 (0.0721) |
0.352 (0.413) |
0.157 (0.216) |
del 11q14 1 | 77 (21%) | 293 |
0.0109 (0.025) |
0.652 (0.697) |
0.109 (0.161) |
0.144 (0.204) |
0.803 (0.835) |
0.261 (0.319) |
0.00045 (0.00188) |
0.0128 (0.0287) |
del 11q24 2 | 95 (26%) | 275 |
0.00433 (0.012) |
0.299 (0.358) |
0.124 (0.178) |
0.0515 (0.088) |
0.322 (0.381) |
0.258 (0.316) |
0.00061 (0.0024) |
0.0005 (0.002) |
del 12p12 1 | 78 (21%) | 292 |
0.00057 (0.00226) |
0.162 (0.222) |
0.00197 (0.00626) |
0.23 (0.288) |
0.214 (0.271) |
0.0302 (0.0583) |
0.505 (0.564) |
0.0716 (0.114) |
del 18q21 2 | 94 (25%) | 276 |
0.00177 (0.00578) |
0.00021 (0.00106) |
0.205 (0.262) |
1e-05 (8.41e-05) |
0.117 (0.17) |
0.536 (0.594) |
0.171 (0.23) |
0.252 (0.31) |
del 22q13 32 | 83 (22%) | 287 |
0.00525 (0.0142) |
0.0574 (0.0959) |
3e-05 (0.000213) |
0.0096 (0.0228) |
0.0921 (0.141) |
0.263 (0.32) |
0.181 (0.241) |
0.124 (0.178) |
amp 5q35 3 | 135 (36%) | 235 |
6e-05 (0.000372) |
0.0339 (0.0635) |
0.572 (0.625) |
0.959 (0.963) |
0.938 (0.948) |
0.999 (0.999) |
0.852 (0.875) |
0.636 (0.684) |
amp 17p11 2 | 46 (12%) | 324 |
0.202 (0.26) |
0.0207 (0.0424) |
0.392 (0.451) |
0.232 (0.29) |
0.0251 (0.0501) |
0.253 (0.311) |
0.0783 (0.123) |
0.0877 (0.136) |
del 8p23 2 | 247 (67%) | 123 |
1e-05 (8.41e-05) |
0.0433 (0.077) |
0.158 (0.217) |
0.652 (0.697) |
0.251 (0.31) |
0.167 (0.226) |
0.334 (0.393) |
0.148 (0.207) |
del 8p12 | 242 (65%) | 128 |
1e-05 (8.41e-05) |
0.0241 (0.0484) |
0.145 (0.205) |
0.565 (0.618) |
0.19 (0.25) |
0.101 (0.151) |
0.277 (0.334) |
0.095 (0.145) |
del 22q12 1 | 79 (21%) | 291 |
0.0295 (0.0573) |
0.193 (0.253) |
0.00197 (0.00626) |
0.107 (0.158) |
0.23 (0.288) |
0.198 (0.257) |
0.181 (0.241) |
0.502 (0.563) |
del xq26 2 | 67 (18%) | 303 |
1e-05 (8.41e-05) |
0.0466 (0.0811) |
0.339 (0.399) |
0.392 (0.451) |
0.904 (0.919) |
0.697 (0.737) |
0.314 (0.372) |
0.892 (0.911) |
amp 7q31 2 | 120 (32%) | 250 |
0.194 (0.253) |
0.00924 (0.0224) |
0.981 (0.983) |
0.896 (0.912) |
0.522 (0.58) |
0.434 (0.493) |
0.694 (0.735) |
0.418 (0.478) |
del 2q22 1 | 52 (14%) | 318 |
0.0685 (0.111) |
0.507 (0.565) |
0.00295 (0.00866) |
0.067 (0.109) |
0.208 (0.265) |
0.168 (0.227) |
0.634 (0.684) |
0.118 (0.171) |
del 12q24 33 | 59 (16%) | 311 |
0.0002 (0.00102) |
0.842 (0.867) |
0.749 (0.782) |
0.914 (0.927) |
0.813 (0.844) |
0.717 (0.752) |
0.819 (0.848) |
0.29 (0.348) |
del 20p12 1 | 29 (8%) | 341 |
0.0452 (0.0801) |
0.683 (0.727) |
0.953 (0.959) |
0.549 (0.605) |
0.376 (0.437) |
0.734 (0.768) |
0.922 (0.933) |
0.379 (0.44) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S1. Gene #1: 'amp_1p22.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 1(1P22.3) MUTATED | 22 | 49 | 18 |
AMP PEAK 1(1P22.3) WILD-TYPE | 87 | 75 | 119 |
Figure S1. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D1V1.png)
P value = 0.00268 (Fisher's exact test), Q value = 0.008
Table S2. Gene #1: 'amp_1p22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 1(1P22.3) MUTATED | 11 | 40 | 38 |
AMP PEAK 1(1P22.3) WILD-TYPE | 77 | 127 | 77 |
Figure S2. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D1V2.png)
P value = 0.0456 (Fisher's exact test), Q value = 0.08
Table S3. Gene #1: 'amp_1p22.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 1(1P22.3) MUTATED | 16 | 8 | 27 | 28 | 9 |
AMP PEAK 1(1P22.3) WILD-TYPE | 38 | 48 | 87 | 56 | 47 |
Figure S3. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D1V4.png)
P value = 0.00904 (Fisher's exact test), Q value = 0.022
Table S4. Gene #1: 'amp_1p22.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 1(1P22.3) MUTATED | 32 | 18 | 19 | 13 |
AMP PEAK 1(1P22.3) WILD-TYPE | 60 | 69 | 100 | 29 |
Figure S4. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D1V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S5. Gene #2: 'amp_1q22' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 2(1Q22) MUTATED | 93 | 111 | 79 |
AMP PEAK 2(1Q22) WILD-TYPE | 16 | 13 | 58 |
Figure S5. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #1: 'CN_CNMF'
![](D2V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S6. Gene #2: 'amp_1q22' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 2(1Q22) MUTATED | 47 | 135 | 101 |
AMP PEAK 2(1Q22) WILD-TYPE | 41 | 32 | 14 |
Figure S6. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D2V2.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00042
Table S7. Gene #2: 'amp_1q22' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 2(1Q22) MUTATED | 45 | 65 | 64 | 46 | 58 |
AMP PEAK 2(1Q22) WILD-TYPE | 16 | 32 | 4 | 23 | 11 |
Figure S7. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D2V3.png)
P value = 0.00328 (Fisher's exact test), Q value = 0.0096
Table S8. Gene #2: 'amp_1q22' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 2(1Q22) MUTATED | 36 | 39 | 81 | 73 | 49 |
AMP PEAK 2(1Q22) WILD-TYPE | 18 | 17 | 33 | 11 | 7 |
Figure S8. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D2V4.png)
P value = 0.0131 (Fisher's exact test), Q value = 0.029
Table S9. Gene #2: 'amp_1q22' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 2(1Q22) MUTATED | 39 | 65 | 47 | 87 | 41 |
AMP PEAK 2(1Q22) WILD-TYPE | 5 | 30 | 9 | 35 | 7 |
Figure S9. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D2V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S10. Gene #3: 'amp_1q42.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 3(1Q42.3) MUTATED | 90 | 103 | 77 |
AMP PEAK 3(1Q42.3) WILD-TYPE | 19 | 21 | 60 |
Figure S10. Get High-res Image Gene #3: 'amp_1q42.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D3V1.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00047
Table S11. Gene #3: 'amp_1q42.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 3(1Q42.3) MUTATED | 48 | 130 | 92 |
AMP PEAK 3(1Q42.3) WILD-TYPE | 40 | 37 | 23 |
Figure S11. Get High-res Image Gene #3: 'amp_1q42.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D3V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S12. Gene #3: 'amp_1q42.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 3(1Q42.3) MUTATED | 43 | 57 | 63 | 46 | 56 |
AMP PEAK 3(1Q42.3) WILD-TYPE | 18 | 40 | 5 | 23 | 13 |
Figure S12. Get High-res Image Gene #3: 'amp_1q42.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D3V3.png)
P value = 0.00102 (Fisher's exact test), Q value = 0.0038
Table S13. Gene #3: 'amp_1q42.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 3(1Q42.3) MUTATED | 34 | 39 | 73 | 72 | 47 |
AMP PEAK 3(1Q42.3) WILD-TYPE | 20 | 17 | 41 | 12 | 9 |
Figure S13. Get High-res Image Gene #3: 'amp_1q42.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D3V4.png)
P value = 0.0377 (Fisher's exact test), Q value = 0.069
Table S14. Gene #3: 'amp_1q42.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 3(1Q42.3) MUTATED | 32 | 61 | 44 | 87 | 42 |
AMP PEAK 3(1Q42.3) WILD-TYPE | 12 | 34 | 12 | 35 | 6 |
Figure S14. Get High-res Image Gene #3: 'amp_1q42.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D3V6.png)
P value = 0.00476 (Fisher's exact test), Q value = 0.013
Table S15. Gene #4: 'amp_2p24.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 4(2P24.1) MUTATED | 12 | 33 | 20 |
AMP PEAK 4(2P24.1) WILD-TYPE | 97 | 91 | 117 |
Figure S15. Get High-res Image Gene #4: 'amp_2p24.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D4V1.png)
P value = 0.00404 (Fisher's exact test), Q value = 0.011
Table S16. Gene #4: 'amp_2p24.1' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 4(2P24.1) MUTATED | 17 | 3 | 21 | 16 | 6 |
AMP PEAK 4(2P24.1) WILD-TYPE | 37 | 53 | 93 | 68 | 50 |
Figure S16. Get High-res Image Gene #4: 'amp_2p24.1' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D4V4.png)
P value = 0.0432 (Fisher's exact test), Q value = 0.077
Table S17. Gene #4: 'amp_2p24.1' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 4(2P24.1) MUTATED | 14 | 20 | 9 | 16 | 5 |
AMP PEAK 4(2P24.1) WILD-TYPE | 30 | 75 | 47 | 106 | 43 |
Figure S17. Get High-res Image Gene #4: 'amp_2p24.1' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D4V6.png)
P value = 0.00362 (Fisher's exact test), Q value = 0.01
Table S18. Gene #5: 'amp_2q33.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 5(2Q33.1) MUTATED | 16 | 33 | 15 |
AMP PEAK 5(2Q33.1) WILD-TYPE | 93 | 91 | 122 |
Figure S18. Get High-res Image Gene #5: 'amp_2q33.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D5V1.png)
P value = 0.0117 (Fisher's exact test), Q value = 0.027
Table S19. Gene #5: 'amp_2q33.1' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 5(2Q33.1) MUTATED | 15 | 4 | 14 | 20 | 9 |
AMP PEAK 5(2Q33.1) WILD-TYPE | 39 | 52 | 100 | 64 | 47 |
Figure S19. Get High-res Image Gene #5: 'amp_2q33.1' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D5V4.png)
P value = 0.00036 (Fisher's exact test), Q value = 0.0016
Table S20. Gene #5: 'amp_2q33.1' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 5(2Q33.1) MUTATED | 29 | 9 | 13 | 10 |
AMP PEAK 5(2Q33.1) WILD-TYPE | 63 | 78 | 106 | 32 |
Figure S20. Get High-res Image Gene #5: 'amp_2q33.1' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D5V7.png)
P value = 3e-04 (Fisher's exact test), Q value = 0.0014
Table S21. Gene #6: 'amp_3q26.31' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 6(3Q26.31) MUTATED | 15 | 41 | 21 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 94 | 83 | 116 |
Figure S21. Get High-res Image Gene #6: 'amp_3q26.31' versus Molecular Subtype #1: 'CN_CNMF'
![](D6V1.png)
P value = 0.0328 (Fisher's exact test), Q value = 0.062
Table S22. Gene #6: 'amp_3q26.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 6(3Q26.31) MUTATED | 13 | 45 | 19 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 75 | 122 | 96 |
Figure S22. Get High-res Image Gene #6: 'amp_3q26.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D6V2.png)
P value = 0.00666 (Fisher's exact test), Q value = 0.018
Table S23. Gene #6: 'amp_3q26.31' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 6(3Q26.31) MUTATED | 22 | 25 | 11 | 10 | 9 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 39 | 72 | 57 | 59 | 60 |
Figure S23. Get High-res Image Gene #6: 'amp_3q26.31' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D6V3.png)
P value = 0.0198 (Fisher's exact test), Q value = 0.041
Table S24. Gene #6: 'amp_3q26.31' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 6(3Q26.31) MUTATED | 17 | 5 | 30 | 16 | 9 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 37 | 51 | 84 | 68 | 47 |
Figure S24. Get High-res Image Gene #6: 'amp_3q26.31' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D6V4.png)
P value = 0.00459 (Fisher's exact test), Q value = 0.013
Table S25. Gene #6: 'amp_3q26.31' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 6(3Q26.31) MUTATED | 17 | 24 | 9 | 22 | 4 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 27 | 71 | 47 | 100 | 44 |
Figure S25. Get High-res Image Gene #6: 'amp_3q26.31' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D6V6.png)
P value = 0.0407 (Fisher's exact test), Q value = 0.073
Table S26. Gene #6: 'amp_3q26.31' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 6(3Q26.31) MUTATED | 21 | 12 | 23 | 15 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 71 | 75 | 96 | 27 |
Figure S26. Get High-res Image Gene #6: 'amp_3q26.31' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D6V7.png)
P value = 0.0226 (Fisher's exact test), Q value = 0.046
Table S27. Gene #6: 'amp_3q26.31' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 6(3Q26.31) MUTATED | 13 | 22 | 18 | 13 | 5 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 54 | 64 | 81 | 22 | 48 |
Figure S27. Get High-res Image Gene #6: 'amp_3q26.31' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D6V8.png)
P value = 0.00347 (Fisher's exact test), Q value = 0.01
Table S28. Gene #7: 'amp_4p14' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 7(4P14) MUTATED | 13 | 29 | 12 |
AMP PEAK 7(4P14) WILD-TYPE | 96 | 95 | 125 |
Figure S28. Get High-res Image Gene #7: 'amp_4p14' versus Molecular Subtype #1: 'CN_CNMF'
![](D7V1.png)
P value = 0.0269 (Fisher's exact test), Q value = 0.053
Table S29. Gene #7: 'amp_4p14' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 7(4P14) MUTATED | 12 | 17 | 25 |
AMP PEAK 7(4P14) WILD-TYPE | 76 | 150 | 90 |
Figure S29. Get High-res Image Gene #7: 'amp_4p14' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D7V2.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00037
Table S30. Gene #7: 'amp_4p14' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 7(4P14) MUTATED | 10 | 14 | 20 | 8 | 1 |
AMP PEAK 7(4P14) WILD-TYPE | 51 | 83 | 48 | 61 | 68 |
Figure S30. Get High-res Image Gene #7: 'amp_4p14' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D7V3.png)
P value = 0.00089 (Fisher's exact test), Q value = 0.0034
Table S31. Gene #7: 'amp_4p14' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 7(4P14) MUTATED | 10 | 8 | 13 | 21 | 1 |
AMP PEAK 7(4P14) WILD-TYPE | 44 | 48 | 101 | 63 | 55 |
Figure S31. Get High-res Image Gene #7: 'amp_4p14' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D7V4.png)
P value = 0.01 (Fisher's exact test), Q value = 0.023
Table S32. Gene #7: 'amp_4p14' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 7(4P14) MUTATED | 18 | 14 | 10 | 12 |
AMP PEAK 7(4P14) WILD-TYPE | 74 | 73 | 109 | 30 |
Figure S32. Get High-res Image Gene #7: 'amp_4p14' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D7V7.png)
P value = 0.0169 (Fisher's exact test), Q value = 0.036
Table S33. Gene #7: 'amp_4p14' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 7(4P14) MUTATED | 12 | 17 | 18 | 6 | 1 |
AMP PEAK 7(4P14) WILD-TYPE | 55 | 69 | 81 | 29 | 52 |
Figure S33. Get High-res Image Gene #7: 'amp_4p14' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D7V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S34. Gene #8: 'amp_5p15.33' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 8(5P15.33) MUTATED | 54 | 72 | 37 |
AMP PEAK 8(5P15.33) WILD-TYPE | 55 | 52 | 100 |
Figure S34. Get High-res Image Gene #8: 'amp_5p15.33' versus Molecular Subtype #1: 'CN_CNMF'
![](D8V1.png)
P value = 0.0371 (Fisher's exact test), Q value = 0.069
Table S35. Gene #8: 'amp_5p15.33' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 8(5P15.33) MUTATED | 29 | 83 | 51 |
AMP PEAK 8(5P15.33) WILD-TYPE | 59 | 84 | 64 |
Figure S35. Get High-res Image Gene #8: 'amp_5p15.33' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D8V2.png)
P value = 0.0162 (Fisher's exact test), Q value = 0.035
Table S36. Gene #8: 'amp_5p15.33' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 8(5P15.33) MUTATED | 26 | 47 | 28 | 43 | 16 |
AMP PEAK 8(5P15.33) WILD-TYPE | 18 | 48 | 28 | 79 | 32 |
Figure S36. Get High-res Image Gene #8: 'amp_5p15.33' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D8V6.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00037
Table S37. Gene #9: 'amp_5q35.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 9(5Q35.3) MUTATED | 56 | 46 | 33 |
AMP PEAK 9(5Q35.3) WILD-TYPE | 53 | 78 | 104 |
Figure S37. Get High-res Image Gene #9: 'amp_5q35.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D9V1.png)
P value = 0.0339 (Fisher's exact test), Q value = 0.063
Table S38. Gene #9: 'amp_5q35.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 9(5Q35.3) MUTATED | 22 | 66 | 47 |
AMP PEAK 9(5Q35.3) WILD-TYPE | 66 | 101 | 68 |
Figure S38. Get High-res Image Gene #9: 'amp_5q35.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D9V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S39. Gene #10: 'amp_6p25.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 10(6P25.2) MUTATED | 50 | 79 | 30 |
AMP PEAK 10(6P25.2) WILD-TYPE | 59 | 45 | 107 |
Figure S39. Get High-res Image Gene #10: 'amp_6p25.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D10V1.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00051
Table S40. Gene #10: 'amp_6p25.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 10(6P25.2) MUTATED | 21 | 82 | 56 |
AMP PEAK 10(6P25.2) WILD-TYPE | 67 | 85 | 59 |
Figure S40. Get High-res Image Gene #10: 'amp_6p25.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D10V2.png)
P value = 0.0169 (Fisher's exact test), Q value = 0.036
Table S41. Gene #10: 'amp_6p25.2' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 10(6P25.2) MUTATED | 30 | 36 | 37 | 21 | 35 |
AMP PEAK 10(6P25.2) WILD-TYPE | 31 | 61 | 31 | 48 | 34 |
Figure S41. Get High-res Image Gene #10: 'amp_6p25.2' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D10V3.png)
P value = 0.024 (Fisher's exact test), Q value = 0.048
Table S42. Gene #10: 'amp_6p25.2' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 10(6P25.2) MUTATED | 24 | 16 | 45 | 46 | 28 |
AMP PEAK 10(6P25.2) WILD-TYPE | 30 | 40 | 69 | 38 | 28 |
Figure S42. Get High-res Image Gene #10: 'amp_6p25.2' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D10V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S43. Gene #11: 'amp_6p21.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 11(6P21.1) MUTATED | 47 | 73 | 38 |
AMP PEAK 11(6P21.1) WILD-TYPE | 62 | 51 | 99 |
Figure S43. Get High-res Image Gene #11: 'amp_6p21.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D11V1.png)
P value = 4e-04 (Fisher's exact test), Q value = 0.0017
Table S44. Gene #11: 'amp_6p21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 11(6P21.1) MUTATED | 22 | 84 | 52 |
AMP PEAK 11(6P21.1) WILD-TYPE | 66 | 83 | 63 |
Figure S44. Get High-res Image Gene #11: 'amp_6p21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D11V2.png)
P value = 0.0107 (Fisher's exact test), Q value = 0.025
Table S45. Gene #11: 'amp_6p21.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 11(6P21.1) MUTATED | 25 | 44 | 36 | 18 | 35 |
AMP PEAK 11(6P21.1) WILD-TYPE | 36 | 53 | 32 | 51 | 34 |
Figure S45. Get High-res Image Gene #11: 'amp_6p21.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D11V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S46. Gene #12: 'amp_6q12' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 12(6Q12) MUTATED | 33 | 55 | 21 |
AMP PEAK 12(6Q12) WILD-TYPE | 76 | 69 | 116 |
Figure S46. Get High-res Image Gene #12: 'amp_6q12' versus Molecular Subtype #1: 'CN_CNMF'
![](D12V1.png)
P value = 0.0377 (Fisher's exact test), Q value = 0.069
Table S47. Gene #12: 'amp_6q12' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 12(6Q12) MUTATED | 22 | 25 | 29 | 14 | 19 |
AMP PEAK 12(6Q12) WILD-TYPE | 39 | 72 | 39 | 55 | 50 |
Figure S47. Get High-res Image Gene #12: 'amp_6q12' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D12V3.png)
P value = 0.00969 (Fisher's exact test), Q value = 0.023
Table S48. Gene #12: 'amp_6q12' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 12(6Q12) MUTATED | 35 | 21 | 26 | 18 |
AMP PEAK 12(6Q12) WILD-TYPE | 57 | 66 | 93 | 24 |
Figure S48. Get High-res Image Gene #12: 'amp_6q12' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D12V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S49. Gene #13: 'amp_6q12' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 13(6Q12) MUTATED | 25 | 45 | 13 |
AMP PEAK 13(6Q12) WILD-TYPE | 84 | 79 | 124 |
Figure S49. Get High-res Image Gene #13: 'amp_6q12' versus Molecular Subtype #1: 'CN_CNMF'
![](D13V1.png)
P value = 0.00789 (Fisher's exact test), Q value = 0.02
Table S50. Gene #13: 'amp_6q12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 13(6Q12) MUTATED | 10 | 40 | 33 |
AMP PEAK 13(6Q12) WILD-TYPE | 78 | 127 | 82 |
Figure S50. Get High-res Image Gene #13: 'amp_6q12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D13V2.png)
P value = 0.00865 (Fisher's exact test), Q value = 0.021
Table S51. Gene #13: 'amp_6q12' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 13(6Q12) MUTATED | 16 | 14 | 26 | 13 | 14 |
AMP PEAK 13(6Q12) WILD-TYPE | 45 | 83 | 42 | 56 | 55 |
Figure S51. Get High-res Image Gene #13: 'amp_6q12' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D13V3.png)
P value = 0.00937 (Fisher's exact test), Q value = 0.023
Table S52. Gene #13: 'amp_6q12' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 13(6Q12) MUTATED | 15 | 10 | 17 | 30 | 11 |
AMP PEAK 13(6Q12) WILD-TYPE | 39 | 46 | 97 | 54 | 45 |
Figure S52. Get High-res Image Gene #13: 'amp_6q12' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D13V4.png)
P value = 0.00424 (Fisher's exact test), Q value = 0.012
Table S53. Gene #13: 'amp_6q12' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 13(6Q12) MUTATED | 27 | 17 | 17 | 16 |
AMP PEAK 13(6Q12) WILD-TYPE | 65 | 70 | 102 | 26 |
Figure S53. Get High-res Image Gene #13: 'amp_6q12' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D13V7.png)
P value = 0.00924 (Fisher's exact test), Q value = 0.022
Table S54. Gene #14: 'amp_7q31.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 14(7Q31.2) MUTATED | 22 | 68 | 30 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 66 | 99 | 85 |
Figure S54. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D14V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S55. Gene #15: 'amp_8q13.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 15(8Q13.3) MUTATED | 105 | 68 | 34 |
AMP PEAK 15(8Q13.3) WILD-TYPE | 4 | 56 | 103 |
Figure S55. Get High-res Image Gene #15: 'amp_8q13.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D15V1.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00037
Table S56. Gene #15: 'amp_8q13.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 15(8Q13.3) MUTATED | 40 | 33 | 45 | 40 | 44 |
AMP PEAK 15(8Q13.3) WILD-TYPE | 21 | 64 | 23 | 29 | 25 |
Figure S56. Get High-res Image Gene #15: 'amp_8q13.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D15V3.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S57. Gene #15: 'amp_8q13.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 15(8Q13.3) MUTATED | 33 | 36 | 41 | 56 | 36 |
AMP PEAK 15(8Q13.3) WILD-TYPE | 21 | 20 | 73 | 28 | 20 |
Figure S57. Get High-res Image Gene #15: 'amp_8q13.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D15V4.png)
P value = 0.00247 (Fisher's exact test), Q value = 0.0075
Table S58. Gene #15: 'amp_8q13.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 15(8Q13.3) MUTATED | 23 | 37 | 34 | 77 | 32 |
AMP PEAK 15(8Q13.3) WILD-TYPE | 21 | 58 | 22 | 45 | 16 |
Figure S58. Get High-res Image Gene #15: 'amp_8q13.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D15V6.png)
P value = 0.0388 (Fisher's exact test), Q value = 0.071
Table S59. Gene #15: 'amp_8q13.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 15(8Q13.3) MUTATED | 59 | 50 | 57 | 29 |
AMP PEAK 15(8Q13.3) WILD-TYPE | 33 | 37 | 62 | 13 |
Figure S59. Get High-res Image Gene #15: 'amp_8q13.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D15V7.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S60. Gene #15: 'amp_8q13.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 15(8Q13.3) MUTATED | 49 | 32 | 61 | 16 | 37 |
AMP PEAK 15(8Q13.3) WILD-TYPE | 18 | 54 | 38 | 19 | 16 |
Figure S60. Get High-res Image Gene #15: 'amp_8q13.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D15V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S61. Gene #16: 'amp_8q24.21' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 16(8Q24.21) MUTATED | 105 | 80 | 46 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 4 | 44 | 91 |
Figure S61. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #1: 'CN_CNMF'
![](D16V1.png)
P value = 0.00768 (Fisher's exact test), Q value = 0.02
Table S62. Gene #16: 'amp_8q24.21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 16(8Q24.21) MUTATED | 51 | 95 | 85 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 37 | 72 | 30 |
Figure S62. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D16V2.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S63. Gene #16: 'amp_8q24.21' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 16(8Q24.21) MUTATED | 42 | 39 | 48 | 47 | 50 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 19 | 58 | 20 | 22 | 19 |
Figure S63. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D16V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S64. Gene #16: 'amp_8q24.21' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 16(8Q24.21) MUTATED | 39 | 40 | 45 | 61 | 41 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 15 | 16 | 69 | 23 | 15 |
Figure S64. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D16V4.png)
P value = 0.0151 (Fisher's exact test), Q value = 0.033
Table S65. Gene #16: 'amp_8q24.21' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
AMP PEAK 16(8Q24.21) MUTATED | 29 | 83 | 31 | 84 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 36 | 44 | 18 | 40 |
Figure S65. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D16V5.png)
P value = 0.00707 (Fisher's exact test), Q value = 0.018
Table S66. Gene #16: 'amp_8q24.21' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 16(8Q24.21) MUTATED | 24 | 46 | 37 | 85 | 35 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 20 | 49 | 19 | 37 | 13 |
Figure S66. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D16V6.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S67. Gene #16: 'amp_8q24.21' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 16(8Q24.21) MUTATED | 51 | 37 | 70 | 18 | 41 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 16 | 49 | 29 | 17 | 12 |
Figure S67. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D16V8.png)
P value = 0.0302 (Fisher's exact test), Q value = 0.058
Table S68. Gene #17: 'amp_9q34.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 17(9Q34.2) MUTATED | 11 | 24 | 12 |
AMP PEAK 17(9Q34.2) WILD-TYPE | 98 | 100 | 125 |
Figure S68. Get High-res Image Gene #17: 'amp_9q34.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D17V1.png)
P value = 0.0307 (Fisher's exact test), Q value = 0.059
Table S69. Gene #17: 'amp_9q34.2' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 17(9Q34.2) MUTATED | 10 | 16 | 12 | 5 | 3 |
AMP PEAK 17(9Q34.2) WILD-TYPE | 51 | 81 | 56 | 64 | 66 |
Figure S69. Get High-res Image Gene #17: 'amp_9q34.2' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D17V3.png)
P value = 0.0128 (Fisher's exact test), Q value = 0.029
Table S70. Gene #17: 'amp_9q34.2' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 17(9Q34.2) MUTATED | 11 | 15 | 9 | 10 | 2 |
AMP PEAK 17(9Q34.2) WILD-TYPE | 33 | 80 | 47 | 112 | 46 |
Figure S70. Get High-res Image Gene #17: 'amp_9q34.2' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D17V6.png)
P value = 0.0132 (Fisher's exact test), Q value = 0.029
Table S71. Gene #17: 'amp_9q34.2' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 17(9Q34.2) MUTATED | 11 | 18 | 8 | 6 | 2 |
AMP PEAK 17(9Q34.2) WILD-TYPE | 56 | 68 | 91 | 29 | 51 |
Figure S71. Get High-res Image Gene #17: 'amp_9q34.2' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D17V8.png)
P value = 0.00823 (Fisher's exact test), Q value = 0.021
Table S72. Gene #18: 'amp_11q13.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 18(11Q13.3) MUTATED | 15 | 20 | 10 | 6 | 4 |
AMP PEAK 18(11Q13.3) WILD-TYPE | 46 | 77 | 58 | 63 | 65 |
Figure S72. Get High-res Image Gene #18: 'amp_11q13.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D18V3.png)
P value = 0.0177 (Fisher's exact test), Q value = 0.037
Table S73. Gene #18: 'amp_11q13.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 18(11Q13.3) MUTATED | 10 | 7 | 25 | 11 | 2 |
AMP PEAK 18(11Q13.3) WILD-TYPE | 44 | 49 | 89 | 73 | 54 |
Figure S73. Get High-res Image Gene #18: 'amp_11q13.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D18V4.png)
P value = 0.00826 (Fisher's exact test), Q value = 0.021
Table S74. Gene #18: 'amp_11q13.3' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
AMP PEAK 18(11Q13.3) MUTATED | 18 | 12 | 10 | 17 |
AMP PEAK 18(11Q13.3) WILD-TYPE | 47 | 115 | 39 | 107 |
Figure S74. Get High-res Image Gene #18: 'amp_11q13.3' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D18V5.png)
P value = 0.00331 (Fisher's exact test), Q value = 0.0096
Table S75. Gene #18: 'amp_11q13.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 18(11Q13.3) MUTATED | 11 | 23 | 5 | 16 | 2 |
AMP PEAK 18(11Q13.3) WILD-TYPE | 33 | 72 | 51 | 106 | 46 |
Figure S75. Get High-res Image Gene #18: 'amp_11q13.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D18V6.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00098
Table S76. Gene #18: 'amp_11q13.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 18(11Q13.3) MUTATED | 12 | 19 | 13 | 10 | 0 |
AMP PEAK 18(11Q13.3) WILD-TYPE | 55 | 67 | 86 | 25 | 53 |
Figure S76. Get High-res Image Gene #18: 'amp_11q13.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D18V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S77. Gene #19: 'amp_13q32.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 19(13Q32.3) MUTATED | 11 | 47 | 9 |
AMP PEAK 19(13Q32.3) WILD-TYPE | 98 | 77 | 128 |
Figure S77. Get High-res Image Gene #19: 'amp_13q32.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D19V1.png)
P value = 0.0158 (Fisher's exact test), Q value = 0.034
Table S78. Gene #19: 'amp_13q32.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 19(13Q32.3) MUTATED | 14 | 15 | 21 | 8 | 8 |
AMP PEAK 19(13Q32.3) WILD-TYPE | 47 | 82 | 47 | 61 | 61 |
Figure S78. Get High-res Image Gene #19: 'amp_13q32.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D19V3.png)
P value = 0.013 (Fisher's exact test), Q value = 0.029
Table S79. Gene #19: 'amp_13q32.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 19(13Q32.3) MUTATED | 26 | 13 | 14 | 10 |
AMP PEAK 19(13Q32.3) WILD-TYPE | 66 | 74 | 105 | 32 |
Figure S79. Get High-res Image Gene #19: 'amp_13q32.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D19V7.png)
P value = 0.0187 (Fisher's exact test), Q value = 0.039
Table S80. Gene #19: 'amp_13q32.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 19(13Q32.3) MUTATED | 19 | 13 | 17 | 10 | 4 |
AMP PEAK 19(13Q32.3) WILD-TYPE | 48 | 73 | 82 | 25 | 49 |
Figure S80. Get High-res Image Gene #19: 'amp_13q32.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D19V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S81. Gene #20: 'amp_13q33.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 20(13Q33.3) MUTATED | 14 | 44 | 9 |
AMP PEAK 20(13Q33.3) WILD-TYPE | 95 | 80 | 128 |
Figure S81. Get High-res Image Gene #20: 'amp_13q33.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D20V1.png)
P value = 0.0217 (Fisher's exact test), Q value = 0.044
Table S82. Gene #20: 'amp_13q33.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 20(13Q33.3) MUTATED | 9 | 29 | 29 |
AMP PEAK 20(13Q33.3) WILD-TYPE | 79 | 138 | 86 |
Figure S82. Get High-res Image Gene #20: 'amp_13q33.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D20V2.png)
P value = 0.00401 (Fisher's exact test), Q value = 0.011
Table S83. Gene #20: 'amp_13q33.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 20(13Q33.3) MUTATED | 13 | 12 | 23 | 8 | 10 |
AMP PEAK 20(13Q33.3) WILD-TYPE | 48 | 85 | 45 | 61 | 59 |
Figure S83. Get High-res Image Gene #20: 'amp_13q33.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D20V3.png)
P value = 0.0485 (Fisher's exact test), Q value = 0.084
Table S84. Gene #20: 'amp_13q33.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 20(13Q33.3) MUTATED | 18 | 12 | 18 | 10 | 5 |
AMP PEAK 20(13Q33.3) WILD-TYPE | 49 | 74 | 81 | 25 | 48 |
Figure S84. Get High-res Image Gene #20: 'amp_13q33.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D20V8.png)
P value = 0.0257 (Fisher's exact test), Q value = 0.051
Table S85. Gene #21: 'amp_15q26.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 21(15Q26.3) MUTATED | 12 | 27 | 15 |
AMP PEAK 21(15Q26.3) WILD-TYPE | 97 | 97 | 122 |
Figure S85. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D21V1.png)
P value = 0.04 (Fisher's exact test), Q value = 0.072
Table S86. Gene #21: 'amp_15q26.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 21(15Q26.3) MUTATED | 8 | 16 | 17 | 7 | 5 |
AMP PEAK 21(15Q26.3) WILD-TYPE | 53 | 81 | 51 | 62 | 64 |
Figure S86. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D21V3.png)
P value = 0.0392 (Fisher's exact test), Q value = 0.071
Table S87. Gene #21: 'amp_15q26.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 21(15Q26.3) MUTATED | 9 | 7 | 17 | 18 | 2 |
AMP PEAK 21(15Q26.3) WILD-TYPE | 45 | 49 | 97 | 66 | 54 |
Figure S87. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D21V4.png)
P value = 0.0207 (Fisher's exact test), Q value = 0.042
Table S88. Gene #22: 'amp_17p11.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 22(17P11.2) MUTATED | 4 | 23 | 19 |
AMP PEAK 22(17P11.2) WILD-TYPE | 84 | 144 | 96 |
Figure S88. Get High-res Image Gene #22: 'amp_17p11.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D22V2.png)
P value = 0.0251 (Fisher's exact test), Q value = 0.05
Table S89. Gene #22: 'amp_17p11.2' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
AMP PEAK 22(17P11.2) MUTATED | 6 | 25 | 6 | 9 |
AMP PEAK 22(17P11.2) WILD-TYPE | 59 | 102 | 43 | 115 |
Figure S89. Get High-res Image Gene #22: 'amp_17p11.2' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D22V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S90. Gene #23: 'amp_17q25.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 23(17Q25.3) MUTATED | 35 | 70 | 40 |
AMP PEAK 23(17Q25.3) WILD-TYPE | 74 | 54 | 97 |
Figure S90. Get High-res Image Gene #23: 'amp_17q25.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D23V1.png)
P value = 0.0194 (Fisher's exact test), Q value = 0.04
Table S91. Gene #23: 'amp_17q25.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 23(17Q25.3) MUTATED | 25 | 77 | 43 |
AMP PEAK 23(17Q25.3) WILD-TYPE | 63 | 90 | 72 |
Figure S91. Get High-res Image Gene #23: 'amp_17q25.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D23V2.png)
P value = 0.00122 (Fisher's exact test), Q value = 0.0044
Table S92. Gene #23: 'amp_17q25.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 23(17Q25.3) MUTATED | 33 | 40 | 22 | 15 | 32 |
AMP PEAK 23(17Q25.3) WILD-TYPE | 28 | 57 | 46 | 54 | 37 |
Figure S92. Get High-res Image Gene #23: 'amp_17q25.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D23V3.png)
P value = 0.0108 (Fisher's exact test), Q value = 0.025
Table S93. Gene #23: 'amp_17q25.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 23(17Q25.3) MUTATED | 28 | 12 | 49 | 29 | 24 |
AMP PEAK 23(17Q25.3) WILD-TYPE | 26 | 44 | 65 | 55 | 32 |
Figure S93. Get High-res Image Gene #23: 'amp_17q25.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D23V4.png)
P value = 0.00092 (Fisher's exact test), Q value = 0.0035
Table S94. Gene #23: 'amp_17q25.3' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
AMP PEAK 23(17Q25.3) MUTATED | 29 | 65 | 15 | 35 |
AMP PEAK 23(17Q25.3) WILD-TYPE | 36 | 62 | 34 | 89 |
Figure S94. Get High-res Image Gene #23: 'amp_17q25.3' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D23V5.png)
P value = 0.00145 (Fisher's exact test), Q value = 0.005
Table S95. Gene #23: 'amp_17q25.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 23(17Q25.3) MUTATED | 26 | 40 | 24 | 32 | 22 |
AMP PEAK 23(17Q25.3) WILD-TYPE | 18 | 55 | 32 | 90 | 26 |
Figure S95. Get High-res Image Gene #23: 'amp_17q25.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D23V6.png)
P value = 0.0251 (Fisher's exact test), Q value = 0.05
Table S96. Gene #23: 'amp_17q25.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 23(17Q25.3) MUTATED | 46 | 26 | 51 | 13 |
AMP PEAK 23(17Q25.3) WILD-TYPE | 46 | 61 | 68 | 29 |
Figure S96. Get High-res Image Gene #23: 'amp_17q25.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D23V7.png)
P value = 0.015 (Fisher's exact test), Q value = 0.032
Table S97. Gene #23: 'amp_17q25.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 23(17Q25.3) MUTATED | 32 | 37 | 26 | 18 | 23 |
AMP PEAK 23(17Q25.3) WILD-TYPE | 35 | 49 | 73 | 17 | 30 |
Figure S97. Get High-res Image Gene #23: 'amp_17q25.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D23V8.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00065
Table S98. Gene #24: 'amp_19p13.12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 24(19P13.12) MUTATED | 14 | 19 | 36 |
AMP PEAK 24(19P13.12) WILD-TYPE | 74 | 148 | 79 |
Figure S98. Get High-res Image Gene #24: 'amp_19p13.12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D24V2.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00056
Table S99. Gene #24: 'amp_19p13.12' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 24(19P13.12) MUTATED | 12 | 11 | 20 | 21 | 4 |
AMP PEAK 24(19P13.12) WILD-TYPE | 49 | 86 | 48 | 48 | 65 |
Figure S99. Get High-res Image Gene #24: 'amp_19p13.12' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D24V3.png)
P value = 5e-04 (Fisher's exact test), Q value = 0.002
Table S100. Gene #24: 'amp_19p13.12' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 24(19P13.12) MUTATED | 16 | 13 | 12 | 23 | 4 |
AMP PEAK 24(19P13.12) WILD-TYPE | 38 | 43 | 102 | 61 | 52 |
Figure S100. Get High-res Image Gene #24: 'amp_19p13.12' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D24V4.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00051
Table S101. Gene #24: 'amp_19p13.12' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
AMP PEAK 24(19P13.12) MUTATED | 7 | 13 | 9 | 39 |
AMP PEAK 24(19P13.12) WILD-TYPE | 58 | 114 | 40 | 85 |
Figure S101. Get High-res Image Gene #24: 'amp_19p13.12' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D24V5.png)
P value = 0.00236 (Fisher's exact test), Q value = 0.0072
Table S102. Gene #24: 'amp_19p13.12' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 24(19P13.12) MUTATED | 3 | 20 | 14 | 29 | 2 |
AMP PEAK 24(19P13.12) WILD-TYPE | 41 | 75 | 42 | 93 | 46 |
Figure S102. Get High-res Image Gene #24: 'amp_19p13.12' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D24V6.png)
P value = 0.00048 (Fisher's exact test), Q value = 0.002
Table S103. Gene #24: 'amp_19p13.12' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 24(19P13.12) MUTATED | 23 | 23 | 9 | 9 |
AMP PEAK 24(19P13.12) WILD-TYPE | 69 | 64 | 110 | 33 |
Figure S103. Get High-res Image Gene #24: 'amp_19p13.12' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D24V7.png)
P value = 0.00141 (Fisher's exact test), Q value = 0.0049
Table S104. Gene #24: 'amp_19p13.12' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 24(19P13.12) MUTATED | 17 | 15 | 27 | 2 | 3 |
AMP PEAK 24(19P13.12) WILD-TYPE | 50 | 71 | 72 | 33 | 50 |
Figure S104. Get High-res Image Gene #24: 'amp_19p13.12' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D24V8.png)
P value = 0.00236 (Fisher's exact test), Q value = 0.0072
Table S105. Gene #25: 'amp_19q12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 25(19Q12) MUTATED | 16 | 25 | 37 |
AMP PEAK 25(19Q12) WILD-TYPE | 72 | 142 | 78 |
Figure S105. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D25V2.png)
P value = 0.0014 (Fisher's exact test), Q value = 0.0049
Table S106. Gene #25: 'amp_19q12' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 25(19Q12) MUTATED | 13 | 17 | 21 | 21 | 5 |
AMP PEAK 25(19Q12) WILD-TYPE | 48 | 80 | 47 | 48 | 64 |
Figure S106. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D25V3.png)
P value = 0.00146 (Fisher's exact test), Q value = 0.005
Table S107. Gene #25: 'amp_19q12' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 25(19Q12) MUTATED | 14 | 16 | 17 | 26 | 4 |
AMP PEAK 25(19Q12) WILD-TYPE | 40 | 40 | 97 | 58 | 52 |
Figure S107. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D25V4.png)
P value = 0.00118 (Fisher's exact test), Q value = 0.0043
Table S108. Gene #25: 'amp_19q12' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
AMP PEAK 25(19Q12) MUTATED | 14 | 14 | 10 | 39 |
AMP PEAK 25(19Q12) WILD-TYPE | 51 | 113 | 39 | 85 |
Figure S108. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D25V5.png)
P value = 0.0115 (Fisher's exact test), Q value = 0.026
Table S109. Gene #25: 'amp_19q12' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 25(19Q12) MUTATED | 10 | 19 | 14 | 32 | 2 |
AMP PEAK 25(19Q12) WILD-TYPE | 34 | 76 | 42 | 90 | 46 |
Figure S109. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D25V6.png)
P value = 0.00042 (Fisher's exact test), Q value = 0.0018
Table S110. Gene #25: 'amp_19q12' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 25(19Q12) MUTATED | 24 | 27 | 11 | 10 |
AMP PEAK 25(19Q12) WILD-TYPE | 68 | 60 | 108 | 32 |
Figure S110. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D25V7.png)
P value = 0.00202 (Fisher's exact test), Q value = 0.0064
Table S111. Gene #25: 'amp_19q12' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 25(19Q12) MUTATED | 16 | 17 | 29 | 8 | 2 |
AMP PEAK 25(19Q12) WILD-TYPE | 51 | 69 | 70 | 27 | 51 |
Figure S111. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D25V8.png)
P value = 0.0309 (Fisher's exact test), Q value = 0.059
Table S112. Gene #26: 'amp_19q13.11' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 26(19Q13.11) MUTATED | 23 | 41 | 27 |
AMP PEAK 26(19Q13.11) WILD-TYPE | 86 | 83 | 110 |
Figure S112. Get High-res Image Gene #26: 'amp_19q13.11' versus Molecular Subtype #1: 'CN_CNMF'
![](D26V1.png)
P value = 0.00092 (Fisher's exact test), Q value = 0.0035
Table S113. Gene #26: 'amp_19q13.11' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 26(19Q13.11) MUTATED | 20 | 20 | 23 | 21 | 6 |
AMP PEAK 26(19Q13.11) WILD-TYPE | 41 | 77 | 45 | 48 | 63 |
Figure S113. Get High-res Image Gene #26: 'amp_19q13.11' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D26V3.png)
P value = 0.00074 (Fisher's exact test), Q value = 0.0028
Table S114. Gene #26: 'amp_19q13.11' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 26(19Q13.11) MUTATED | 16 | 17 | 21 | 31 | 5 |
AMP PEAK 26(19Q13.11) WILD-TYPE | 38 | 39 | 93 | 53 | 51 |
Figure S114. Get High-res Image Gene #26: 'amp_19q13.11' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D26V4.png)
P value = 0.00749 (Fisher's exact test), Q value = 0.019
Table S115. Gene #26: 'amp_19q13.11' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
AMP PEAK 26(19Q13.11) MUTATED | 16 | 19 | 14 | 41 |
AMP PEAK 26(19Q13.11) WILD-TYPE | 49 | 108 | 35 | 83 |
Figure S115. Get High-res Image Gene #26: 'amp_19q13.11' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D26V5.png)
P value = 0.00184 (Fisher's exact test), Q value = 0.006
Table S116. Gene #26: 'amp_19q13.11' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 26(19Q13.11) MUTATED | 14 | 23 | 18 | 33 | 2 |
AMP PEAK 26(19Q13.11) WILD-TYPE | 30 | 72 | 38 | 89 | 46 |
Figure S116. Get High-res Image Gene #26: 'amp_19q13.11' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D26V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S117. Gene #26: 'amp_19q13.11' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 26(19Q13.11) MUTATED | 32 | 27 | 11 | 15 |
AMP PEAK 26(19Q13.11) WILD-TYPE | 60 | 60 | 108 | 27 |
Figure S117. Get High-res Image Gene #26: 'amp_19q13.11' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D26V7.png)
P value = 0.00048 (Fisher's exact test), Q value = 0.002
Table S118. Gene #26: 'amp_19q13.11' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 26(19Q13.11) MUTATED | 21 | 22 | 29 | 11 | 2 |
AMP PEAK 26(19Q13.11) WILD-TYPE | 46 | 64 | 70 | 24 | 51 |
Figure S118. Get High-res Image Gene #26: 'amp_19q13.11' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D26V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S119. Gene #27: 'amp_20q13.13' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 27(20Q13.13) MUTATED | 34 | 65 | 25 |
AMP PEAK 27(20Q13.13) WILD-TYPE | 75 | 59 | 112 |
Figure S119. Get High-res Image Gene #27: 'amp_20q13.13' versus Molecular Subtype #1: 'CN_CNMF'
![](D27V1.png)
P value = 0.0323 (Fisher's exact test), Q value = 0.061
Table S120. Gene #27: 'amp_20q13.13' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 27(20Q13.13) MUTATED | 23 | 33 | 31 | 22 | 14 |
AMP PEAK 27(20Q13.13) WILD-TYPE | 38 | 64 | 37 | 47 | 55 |
Figure S120. Get High-res Image Gene #27: 'amp_20q13.13' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D27V3.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.0014
Table S121. Gene #27: 'amp_20q13.13' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 27(20Q13.13) MUTATED | 19 | 19 | 37 | 41 | 7 |
AMP PEAK 27(20Q13.13) WILD-TYPE | 35 | 37 | 77 | 43 | 49 |
Figure S121. Get High-res Image Gene #27: 'amp_20q13.13' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D27V4.png)
P value = 0.0117 (Fisher's exact test), Q value = 0.027
Table S122. Gene #27: 'amp_20q13.13' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 27(20Q13.13) MUTATED | 21 | 29 | 24 | 41 | 8 |
AMP PEAK 27(20Q13.13) WILD-TYPE | 23 | 66 | 32 | 81 | 40 |
Figure S122. Get High-res Image Gene #27: 'amp_20q13.13' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D27V6.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S123. Gene #27: 'amp_20q13.13' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 27(20Q13.13) MUTATED | 41 | 27 | 23 | 25 |
AMP PEAK 27(20Q13.13) WILD-TYPE | 51 | 60 | 96 | 17 |
Figure S123. Get High-res Image Gene #27: 'amp_20q13.13' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D27V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S124. Gene #28: 'amp_20q13.33' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 28(20Q13.33) MUTATED | 35 | 66 | 27 |
AMP PEAK 28(20Q13.33) WILD-TYPE | 74 | 58 | 110 |
Figure S124. Get High-res Image Gene #28: 'amp_20q13.33' versus Molecular Subtype #1: 'CN_CNMF'
![](D28V1.png)
P value = 0.00699 (Fisher's exact test), Q value = 0.018
Table S125. Gene #28: 'amp_20q13.33' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 28(20Q13.33) MUTATED | 22 | 34 | 35 | 21 | 15 |
AMP PEAK 28(20Q13.33) WILD-TYPE | 39 | 63 | 33 | 48 | 54 |
Figure S125. Get High-res Image Gene #28: 'amp_20q13.33' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D28V3.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S126. Gene #28: 'amp_20q13.33' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 28(20Q13.33) MUTATED | 21 | 17 | 39 | 43 | 7 |
AMP PEAK 28(20Q13.33) WILD-TYPE | 33 | 39 | 75 | 41 | 49 |
Figure S126. Get High-res Image Gene #28: 'amp_20q13.33' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D28V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S127. Gene #28: 'amp_20q13.33' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 28(20Q13.33) MUTATED | 42 | 27 | 26 | 25 |
AMP PEAK 28(20Q13.33) WILD-TYPE | 50 | 60 | 93 | 17 |
Figure S127. Get High-res Image Gene #28: 'amp_20q13.33' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D28V7.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00047
Table S128. Gene #29: 'amp_xq28' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
AMP PEAK 29(XQ28) MUTATED | 41 | 25 | 19 |
AMP PEAK 29(XQ28) WILD-TYPE | 68 | 99 | 118 |
Figure S128. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #1: 'CN_CNMF'
![](D29V1.png)
P value = 0.0288 (Fisher's exact test), Q value = 0.056
Table S129. Gene #29: 'amp_xq28' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
AMP PEAK 29(XQ28) MUTATED | 12 | 47 | 26 |
AMP PEAK 29(XQ28) WILD-TYPE | 76 | 120 | 89 |
Figure S129. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D29V2.png)
P value = 0.0406 (Fisher's exact test), Q value = 0.073
Table S130. Gene #29: 'amp_xq28' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
AMP PEAK 29(XQ28) MUTATED | 12 | 25 | 11 | 12 | 25 |
AMP PEAK 29(XQ28) WILD-TYPE | 49 | 72 | 57 | 57 | 44 |
Figure S130. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D29V3.png)
P value = 0.017 (Fisher's exact test), Q value = 0.036
Table S131. Gene #29: 'amp_xq28' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
AMP PEAK 29(XQ28) MUTATED | 12 | 11 | 30 | 11 | 21 |
AMP PEAK 29(XQ28) WILD-TYPE | 42 | 45 | 84 | 73 | 35 |
Figure S131. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D29V4.png)
P value = 0.0095 (Fisher's exact test), Q value = 0.023
Table S132. Gene #29: 'amp_xq28' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
AMP PEAK 29(XQ28) MUTATED | 10 | 42 | 7 | 25 |
AMP PEAK 29(XQ28) WILD-TYPE | 55 | 85 | 42 | 99 |
Figure S132. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D29V5.png)
P value = 0.00474 (Fisher's exact test), Q value = 0.013
Table S133. Gene #29: 'amp_xq28' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
AMP PEAK 29(XQ28) MUTATED | 5 | 24 | 14 | 21 | 20 |
AMP PEAK 29(XQ28) WILD-TYPE | 39 | 71 | 42 | 101 | 28 |
Figure S133. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D29V6.png)
P value = 0.0457 (Fisher's exact test), Q value = 0.08
Table S134. Gene #29: 'amp_xq28' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
AMP PEAK 29(XQ28) MUTATED | 21 | 15 | 36 | 5 |
AMP PEAK 29(XQ28) WILD-TYPE | 71 | 72 | 83 | 37 |
Figure S134. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D29V7.png)
P value = 0.00039 (Fisher's exact test), Q value = 0.0017
Table S135. Gene #29: 'amp_xq28' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
AMP PEAK 29(XQ28) MUTATED | 16 | 20 | 16 | 2 | 23 |
AMP PEAK 29(XQ28) WILD-TYPE | 51 | 66 | 83 | 33 | 30 |
Figure S135. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D29V8.png)
P value = 0.00156 (Fisher's exact test), Q value = 0.0053
Table S136. Gene #30: 'del_1p36.31' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 1(1P36.31) MUTATED | 47 | 69 | 46 |
DEL PEAK 1(1P36.31) WILD-TYPE | 62 | 55 | 91 |
Figure S136. Get High-res Image Gene #30: 'del_1p36.31' versus Molecular Subtype #1: 'CN_CNMF'
![](D30V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S137. Gene #30: 'del_1p36.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 1(1P36.31) MUTATED | 25 | 64 | 73 |
DEL PEAK 1(1P36.31) WILD-TYPE | 63 | 103 | 42 |
Figure S137. Get High-res Image Gene #30: 'del_1p36.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D30V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S138. Gene #30: 'del_1p36.31' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 1(1P36.31) MUTATED | 17 | 35 | 57 | 31 | 19 |
DEL PEAK 1(1P36.31) WILD-TYPE | 44 | 62 | 11 | 38 | 50 |
Figure S138. Get High-res Image Gene #30: 'del_1p36.31' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D30V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S139. Gene #30: 'del_1p36.31' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 1(1P36.31) MUTATED | 24 | 24 | 40 | 57 | 14 |
DEL PEAK 1(1P36.31) WILD-TYPE | 30 | 32 | 74 | 27 | 42 |
Figure S139. Get High-res Image Gene #30: 'del_1p36.31' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D30V4.png)
P value = 0.00127 (Fisher's exact test), Q value = 0.0046
Table S140. Gene #30: 'del_1p36.31' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 1(1P36.31) MUTATED | 14 | 37 | 31 | 65 | 12 |
DEL PEAK 1(1P36.31) WILD-TYPE | 30 | 58 | 25 | 57 | 36 |
Figure S140. Get High-res Image Gene #30: 'del_1p36.31' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D30V6.png)
P value = 0.0123 (Fisher's exact test), Q value = 0.028
Table S141. Gene #30: 'del_1p36.31' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 1(1P36.31) MUTATED | 48 | 40 | 39 | 23 |
DEL PEAK 1(1P36.31) WILD-TYPE | 44 | 47 | 80 | 19 |
Figure S141. Get High-res Image Gene #30: 'del_1p36.31' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D30V7.png)
P value = 0.00989 (Fisher's exact test), Q value = 0.023
Table S142. Gene #30: 'del_1p36.31' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 1(1P36.31) MUTATED | 31 | 36 | 56 | 12 | 15 |
DEL PEAK 1(1P36.31) WILD-TYPE | 36 | 50 | 43 | 23 | 38 |
Figure S142. Get High-res Image Gene #30: 'del_1p36.31' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D30V8.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00033
Table S143. Gene #31: 'del_1p36.11' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 2(1P36.11) MUTATED | 40 | 66 | 36 |
DEL PEAK 2(1P36.11) WILD-TYPE | 69 | 58 | 101 |
Figure S143. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #1: 'CN_CNMF'
![](D31V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S144. Gene #31: 'del_1p36.11' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 2(1P36.11) MUTATED | 22 | 49 | 71 |
DEL PEAK 2(1P36.11) WILD-TYPE | 66 | 118 | 44 |
Figure S144. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D31V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S145. Gene #31: 'del_1p36.11' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 2(1P36.11) MUTATED | 16 | 26 | 56 | 24 | 18 |
DEL PEAK 2(1P36.11) WILD-TYPE | 45 | 71 | 12 | 45 | 51 |
Figure S145. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D31V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S146. Gene #31: 'del_1p36.11' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 2(1P36.11) MUTATED | 22 | 19 | 31 | 54 | 14 |
DEL PEAK 2(1P36.11) WILD-TYPE | 32 | 37 | 83 | 30 | 42 |
Figure S146. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D31V4.png)
P value = 0.00189 (Fisher's exact test), Q value = 0.0061
Table S147. Gene #31: 'del_1p36.11' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
DEL PEAK 2(1P36.11) MUTATED | 13 | 46 | 21 | 59 |
DEL PEAK 2(1P36.11) WILD-TYPE | 52 | 81 | 28 | 65 |
Figure S147. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D31V5.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00061
Table S148. Gene #31: 'del_1p36.11' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 2(1P36.11) MUTATED | 9 | 30 | 25 | 64 | 11 |
DEL PEAK 2(1P36.11) WILD-TYPE | 35 | 65 | 31 | 58 | 37 |
Figure S148. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D31V6.png)
P value = 0.00027 (Fisher's exact test), Q value = 0.0013
Table S149. Gene #31: 'del_1p36.11' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 2(1P36.11) MUTATED | 46 | 37 | 28 | 21 |
DEL PEAK 2(1P36.11) WILD-TYPE | 46 | 50 | 91 | 21 |
Figure S149. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D31V7.png)
P value = 0.00026 (Fisher's exact test), Q value = 0.0013
Table S150. Gene #31: 'del_1p36.11' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 2(1P36.11) MUTATED | 28 | 27 | 55 | 8 | 14 |
DEL PEAK 2(1P36.11) WILD-TYPE | 39 | 59 | 44 | 27 | 39 |
Figure S150. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D31V8.png)
P value = 0.00295 (Fisher's exact test), Q value = 0.0087
Table S151. Gene #32: 'del_2q22.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 3(2Q22.1) MUTATED | 15 | 16 | 12 | 7 | 2 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 46 | 81 | 56 | 62 | 67 |
Figure S151. Get High-res Image Gene #32: 'del_2q22.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D32V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S152. Gene #33: 'del_2q37.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 4(2Q37.3) MUTATED | 18 | 23 | 12 | 8 | 1 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 43 | 74 | 56 | 61 | 68 |
Figure S152. Get High-res Image Gene #33: 'del_2q37.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D33V3.png)
P value = 0.00096 (Fisher's exact test), Q value = 0.0036
Table S153. Gene #33: 'del_2q37.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 4(2Q37.3) MUTATED | 12 | 9 | 28 | 12 | 1 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 42 | 47 | 86 | 72 | 55 |
Figure S153. Get High-res Image Gene #33: 'del_2q37.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D33V4.png)
P value = 0.0384 (Fisher's exact test), Q value = 0.07
Table S154. Gene #33: 'del_2q37.3' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
DEL PEAK 4(2Q37.3) MUTATED | 15 | 26 | 3 | 17 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 50 | 101 | 46 | 107 |
Figure S154. Get High-res Image Gene #33: 'del_2q37.3' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D33V5.png)
P value = 0.0097 (Fisher's exact test), Q value = 0.023
Table S155. Gene #33: 'del_2q37.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 4(2Q37.3) MUTATED | 11 | 16 | 16 | 15 | 3 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 33 | 79 | 40 | 107 | 45 |
Figure S155. Get High-res Image Gene #33: 'del_2q37.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D33V6.png)
P value = 0.00156 (Fisher's exact test), Q value = 0.0053
Table S156. Gene #33: 'del_2q37.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 4(2Q37.3) MUTATED | 20 | 14 | 10 | 10 | 4 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 47 | 72 | 89 | 25 | 49 |
Figure S156. Get High-res Image Gene #33: 'del_2q37.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D33V8.png)
P value = 0.00561 (Fisher's exact test), Q value = 0.015
Table S157. Gene #34: 'del_3p13' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 5(3P13) MUTATED | 14 | 36 | 23 |
DEL PEAK 5(3P13) WILD-TYPE | 95 | 88 | 114 |
Figure S157. Get High-res Image Gene #34: 'del_3p13' versus Molecular Subtype #1: 'CN_CNMF'
![](D34V1.png)
P value = 0.0454 (Fisher's exact test), Q value = 0.08
Table S158. Gene #34: 'del_3p13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 5(3P13) MUTATED | 17 | 25 | 31 |
DEL PEAK 5(3P13) WILD-TYPE | 71 | 142 | 84 |
Figure S158. Get High-res Image Gene #34: 'del_3p13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D34V2.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00069
Table S159. Gene #34: 'del_3p13' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 5(3P13) MUTATED | 14 | 11 | 24 | 18 | 5 |
DEL PEAK 5(3P13) WILD-TYPE | 47 | 86 | 44 | 51 | 64 |
Figure S159. Get High-res Image Gene #34: 'del_3p13' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D34V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S160. Gene #34: 'del_3p13' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 5(3P13) MUTATED | 23 | 5 | 15 | 24 | 5 |
DEL PEAK 5(3P13) WILD-TYPE | 31 | 51 | 99 | 60 | 51 |
Figure S160. Get High-res Image Gene #34: 'del_3p13' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D34V4.png)
P value = 0.00137 (Fisher's exact test), Q value = 0.0049
Table S161. Gene #34: 'del_3p13' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
DEL PEAK 5(3P13) MUTATED | 5 | 20 | 9 | 37 |
DEL PEAK 5(3P13) WILD-TYPE | 60 | 107 | 40 | 87 |
Figure S161. Get High-res Image Gene #34: 'del_3p13' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D34V5.png)
P value = 0.0341 (Fisher's exact test), Q value = 0.064
Table S162. Gene #34: 'del_3p13' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 5(3P13) MUTATED | 5 | 17 | 12 | 33 | 4 |
DEL PEAK 5(3P13) WILD-TYPE | 39 | 78 | 44 | 89 | 44 |
Figure S162. Get High-res Image Gene #34: 'del_3p13' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D34V6.png)
P value = 3e-04 (Fisher's exact test), Q value = 0.0014
Table S163. Gene #34: 'del_3p13' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 5(3P13) MUTATED | 29 | 21 | 11 | 6 |
DEL PEAK 5(3P13) WILD-TYPE | 63 | 66 | 108 | 36 |
Figure S163. Get High-res Image Gene #34: 'del_3p13' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D34V7.png)
P value = 0.00214 (Fisher's exact test), Q value = 0.0067
Table S164. Gene #34: 'del_3p13' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 5(3P13) MUTATED | 20 | 13 | 27 | 3 | 4 |
DEL PEAK 5(3P13) WILD-TYPE | 47 | 73 | 72 | 32 | 49 |
Figure S164. Get High-res Image Gene #34: 'del_3p13' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D34V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S165. Gene #35: 'del_4p16.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 6(4P16.3) MUTATED | 21 | 48 | 16 |
DEL PEAK 6(4P16.3) WILD-TYPE | 88 | 76 | 121 |
Figure S165. Get High-res Image Gene #35: 'del_4p16.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D35V1.png)
P value = 0.0267 (Fisher's exact test), Q value = 0.053
Table S166. Gene #35: 'del_4p16.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 6(4P16.3) MUTATED | 6 | 20 | 20 | 32 | 6 |
DEL PEAK 6(4P16.3) WILD-TYPE | 38 | 75 | 36 | 90 | 42 |
Figure S166. Get High-res Image Gene #35: 'del_4p16.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D35V6.png)
P value = 0.0459 (Fisher's exact test), Q value = 0.08
Table S167. Gene #35: 'del_4p16.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 6(4P16.3) MUTATED | 30 | 20 | 19 | 9 |
DEL PEAK 6(4P16.3) WILD-TYPE | 62 | 67 | 100 | 33 |
Figure S167. Get High-res Image Gene #35: 'del_4p16.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D35V7.png)
P value = 0.00702 (Fisher's exact test), Q value = 0.018
Table S168. Gene #35: 'del_4p16.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 6(4P16.3) MUTATED | 25 | 20 | 23 | 4 | 6 |
DEL PEAK 6(4P16.3) WILD-TYPE | 42 | 66 | 76 | 31 | 47 |
Figure S168. Get High-res Image Gene #35: 'del_4p16.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D35V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S169. Gene #36: 'del_4q21.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 7(4Q21.3) MUTATED | 38 | 93 | 40 |
DEL PEAK 7(4Q21.3) WILD-TYPE | 71 | 31 | 97 |
Figure S169. Get High-res Image Gene #36: 'del_4q21.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D36V1.png)
P value = 0.00254 (Fisher's exact test), Q value = 0.0076
Table S170. Gene #36: 'del_4q21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 7(4Q21.3) MUTATED | 33 | 70 | 68 |
DEL PEAK 7(4Q21.3) WILD-TYPE | 55 | 97 | 47 |
Figure S170. Get High-res Image Gene #36: 'del_4q21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D36V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S171. Gene #36: 'del_4q21.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 7(4Q21.3) MUTATED | 37 | 44 | 51 | 21 | 16 |
DEL PEAK 7(4Q21.3) WILD-TYPE | 24 | 53 | 17 | 48 | 53 |
Figure S171. Get High-res Image Gene #36: 'del_4q21.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D36V3.png)
P value = 0.00024 (Fisher's exact test), Q value = 0.0012
Table S172. Gene #36: 'del_4q21.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 7(4Q21.3) MUTATED | 28 | 22 | 55 | 51 | 13 |
DEL PEAK 7(4Q21.3) WILD-TYPE | 26 | 34 | 59 | 33 | 43 |
Figure S172. Get High-res Image Gene #36: 'del_4q21.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D36V4.png)
P value = 0.00169 (Fisher's exact test), Q value = 0.0057
Table S173. Gene #36: 'del_4q21.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 7(4Q21.3) MUTATED | 20 | 45 | 32 | 63 | 10 |
DEL PEAK 7(4Q21.3) WILD-TYPE | 24 | 50 | 24 | 59 | 38 |
Figure S173. Get High-res Image Gene #36: 'del_4q21.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D36V6.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S174. Gene #36: 'del_4q21.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 7(4Q21.3) MUTATED | 56 | 38 | 40 | 29 |
DEL PEAK 7(4Q21.3) WILD-TYPE | 36 | 49 | 79 | 13 |
Figure S174. Get High-res Image Gene #36: 'del_4q21.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D36V7.png)
P value = 4e-04 (Fisher's exact test), Q value = 0.0017
Table S175. Gene #36: 'del_4q21.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 7(4Q21.3) MUTATED | 41 | 43 | 52 | 15 | 12 |
DEL PEAK 7(4Q21.3) WILD-TYPE | 26 | 43 | 47 | 20 | 41 |
Figure S175. Get High-res Image Gene #36: 'del_4q21.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D36V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S176. Gene #37: 'del_4q22.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 8(4Q22.3) MUTATED | 39 | 94 | 39 |
DEL PEAK 8(4Q22.3) WILD-TYPE | 70 | 30 | 98 |
Figure S176. Get High-res Image Gene #37: 'del_4q22.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D37V1.png)
P value = 0.00376 (Fisher's exact test), Q value = 0.011
Table S177. Gene #37: 'del_4q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 8(4Q22.3) MUTATED | 33 | 71 | 68 |
DEL PEAK 8(4Q22.3) WILD-TYPE | 55 | 96 | 47 |
Figure S177. Get High-res Image Gene #37: 'del_4q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D37V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S178. Gene #37: 'del_4q22.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 8(4Q22.3) MUTATED | 36 | 44 | 51 | 21 | 17 |
DEL PEAK 8(4Q22.3) WILD-TYPE | 25 | 53 | 17 | 48 | 52 |
Figure S178. Get High-res Image Gene #37: 'del_4q22.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D37V3.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.00078
Table S179. Gene #37: 'del_4q22.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 8(4Q22.3) MUTATED | 28 | 22 | 54 | 52 | 13 |
DEL PEAK 8(4Q22.3) WILD-TYPE | 26 | 34 | 60 | 32 | 43 |
Figure S179. Get High-res Image Gene #37: 'del_4q22.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D37V4.png)
P value = 0.00124 (Fisher's exact test), Q value = 0.0045
Table S180. Gene #37: 'del_4q22.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 8(4Q22.3) MUTATED | 22 | 43 | 32 | 64 | 10 |
DEL PEAK 8(4Q22.3) WILD-TYPE | 22 | 52 | 24 | 58 | 38 |
Figure S180. Get High-res Image Gene #37: 'del_4q22.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D37V6.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00069
Table S181. Gene #37: 'del_4q22.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 8(4Q22.3) MUTATED | 55 | 38 | 42 | 29 |
DEL PEAK 8(4Q22.3) WILD-TYPE | 37 | 49 | 77 | 13 |
Figure S181. Get High-res Image Gene #37: 'del_4q22.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D37V7.png)
P value = 0.00049 (Fisher's exact test), Q value = 0.002
Table S182. Gene #37: 'del_4q22.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 8(4Q22.3) MUTATED | 41 | 42 | 52 | 17 | 12 |
DEL PEAK 8(4Q22.3) WILD-TYPE | 26 | 44 | 47 | 18 | 41 |
Figure S182. Get High-res Image Gene #37: 'del_4q22.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D37V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S183. Gene #38: 'del_4q35.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 9(4Q35.1) MUTATED | 43 | 94 | 35 |
DEL PEAK 9(4Q35.1) WILD-TYPE | 66 | 30 | 102 |
Figure S183. Get High-res Image Gene #38: 'del_4q35.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D38V1.png)
P value = 0.00026 (Fisher's exact test), Q value = 0.0013
Table S184. Gene #38: 'del_4q35.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 9(4Q35.1) MUTATED | 31 | 70 | 71 |
DEL PEAK 9(4Q35.1) WILD-TYPE | 57 | 97 | 44 |
Figure S184. Get High-res Image Gene #38: 'del_4q35.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D38V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S185. Gene #38: 'del_4q35.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 9(4Q35.1) MUTATED | 38 | 39 | 49 | 22 | 21 |
DEL PEAK 9(4Q35.1) WILD-TYPE | 23 | 58 | 19 | 47 | 48 |
Figure S185. Get High-res Image Gene #38: 'del_4q35.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D38V3.png)
P value = 0.00064 (Fisher's exact test), Q value = 0.0025
Table S186. Gene #38: 'del_4q35.1' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 9(4Q35.1) MUTATED | 28 | 22 | 48 | 54 | 17 |
DEL PEAK 9(4Q35.1) WILD-TYPE | 26 | 34 | 66 | 30 | 39 |
Figure S186. Get High-res Image Gene #38: 'del_4q35.1' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D38V4.png)
P value = 0.00625 (Fisher's exact test), Q value = 0.017
Table S187. Gene #38: 'del_4q35.1' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 9(4Q35.1) MUTATED | 21 | 41 | 32 | 65 | 12 |
DEL PEAK 9(4Q35.1) WILD-TYPE | 23 | 54 | 24 | 57 | 36 |
Figure S187. Get High-res Image Gene #38: 'del_4q35.1' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D38V6.png)
P value = 0.00027 (Fisher's exact test), Q value = 0.0013
Table S188. Gene #38: 'del_4q35.1' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 9(4Q35.1) MUTATED | 53 | 40 | 40 | 28 |
DEL PEAK 9(4Q35.1) WILD-TYPE | 39 | 47 | 79 | 14 |
Figure S188. Get High-res Image Gene #38: 'del_4q35.1' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D38V7.png)
P value = 0.00495 (Fisher's exact test), Q value = 0.013
Table S189. Gene #38: 'del_4q35.1' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 9(4Q35.1) MUTATED | 38 | 41 | 52 | 17 | 13 |
DEL PEAK 9(4Q35.1) WILD-TYPE | 29 | 45 | 47 | 18 | 40 |
Figure S189. Get High-res Image Gene #38: 'del_4q35.1' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D38V8.png)
P value = 0.00951 (Fisher's exact test), Q value = 0.023
Table S190. Gene #39: 'del_6q27' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 10(6Q27) MUTATED | 39 | 58 | 39 |
DEL PEAK 10(6Q27) WILD-TYPE | 70 | 66 | 98 |
Figure S190. Get High-res Image Gene #39: 'del_6q27' versus Molecular Subtype #1: 'CN_CNMF'
![](D39V1.png)
P value = 0.0269 (Fisher's exact test), Q value = 0.053
Table S191. Gene #39: 'del_6q27' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 10(6Q27) MUTATED | 23 | 72 | 41 |
DEL PEAK 10(6Q27) WILD-TYPE | 65 | 95 | 74 |
Figure S191. Get High-res Image Gene #39: 'del_6q27' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D39V2.png)
P value = 0.0399 (Fisher's exact test), Q value = 0.072
Table S192. Gene #39: 'del_6q27' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 10(6Q27) MUTATED | 20 | 25 | 18 | 45 | 24 |
DEL PEAK 10(6Q27) WILD-TYPE | 24 | 70 | 38 | 77 | 24 |
Figure S192. Get High-res Image Gene #39: 'del_6q27' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D39V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S193. Gene #40: 'del_8p23.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 11(8P23.2) MUTATED | 103 | 86 | 58 |
DEL PEAK 11(8P23.2) WILD-TYPE | 6 | 38 | 79 |
Figure S193. Get High-res Image Gene #40: 'del_8p23.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D40V1.png)
P value = 0.0433 (Fisher's exact test), Q value = 0.077
Table S194. Gene #40: 'del_8p23.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 11(8P23.2) MUTATED | 49 | 118 | 80 |
DEL PEAK 11(8P23.2) WILD-TYPE | 39 | 49 | 35 |
Figure S194. Get High-res Image Gene #40: 'del_8p23.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D40V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S195. Gene #41: 'del_8p12' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 12(8P12) MUTATED | 100 | 86 | 56 |
DEL PEAK 12(8P12) WILD-TYPE | 9 | 38 | 81 |
Figure S195. Get High-res Image Gene #41: 'del_8p12' versus Molecular Subtype #1: 'CN_CNMF'
![](D41V1.png)
P value = 0.0241 (Fisher's exact test), Q value = 0.048
Table S196. Gene #41: 'del_8p12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 12(8P12) MUTATED | 48 | 110 | 84 |
DEL PEAK 12(8P12) WILD-TYPE | 40 | 57 | 31 |
Figure S196. Get High-res Image Gene #41: 'del_8p12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D41V2.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S197. Gene #42: 'del_9p21.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 13(9P21.3) MUTATED | 40 | 70 | 40 |
DEL PEAK 13(9P21.3) WILD-TYPE | 69 | 54 | 97 |
Figure S197. Get High-res Image Gene #42: 'del_9p21.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D42V1.png)
P value = 0.00848 (Fisher's exact test), Q value = 0.021
Table S198. Gene #42: 'del_9p21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 13(9P21.3) MUTATED | 29 | 61 | 60 |
DEL PEAK 13(9P21.3) WILD-TYPE | 59 | 106 | 55 |
Figure S198. Get High-res Image Gene #42: 'del_9p21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D42V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S199. Gene #42: 'del_9p21.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 13(9P21.3) MUTATED | 31 | 31 | 43 | 26 | 16 |
DEL PEAK 13(9P21.3) WILD-TYPE | 30 | 66 | 25 | 43 | 53 |
Figure S199. Get High-res Image Gene #42: 'del_9p21.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D42V3.png)
P value = 0.00175 (Fisher's exact test), Q value = 0.0058
Table S200. Gene #42: 'del_9p21.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 13(9P21.3) MUTATED | 28 | 20 | 38 | 46 | 15 |
DEL PEAK 13(9P21.3) WILD-TYPE | 26 | 36 | 76 | 38 | 41 |
Figure S200. Get High-res Image Gene #42: 'del_9p21.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D42V4.png)
P value = 0.00173 (Fisher's exact test), Q value = 0.0058
Table S201. Gene #42: 'del_9p21.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 13(9P21.3) MUTATED | 20 | 31 | 29 | 59 | 10 |
DEL PEAK 13(9P21.3) WILD-TYPE | 24 | 64 | 27 | 63 | 38 |
Figure S201. Get High-res Image Gene #42: 'del_9p21.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D42V6.png)
P value = 0.0189 (Fisher's exact test), Q value = 0.039
Table S202. Gene #42: 'del_9p21.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 13(9P21.3) MUTATED | 42 | 36 | 39 | 25 |
DEL PEAK 13(9P21.3) WILD-TYPE | 50 | 51 | 80 | 17 |
Figure S202. Get High-res Image Gene #42: 'del_9p21.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D42V7.png)
P value = 0.00792 (Fisher's exact test), Q value = 0.02
Table S203. Gene #42: 'del_9p21.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 13(9P21.3) MUTATED | 37 | 29 | 47 | 15 | 14 |
DEL PEAK 13(9P21.3) WILD-TYPE | 30 | 57 | 52 | 20 | 39 |
Figure S203. Get High-res Image Gene #42: 'del_9p21.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D42V8.png)
P value = 0.00205 (Fisher's exact test), Q value = 0.0064
Table S204. Gene #43: 'del_9q31.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 14(9Q31.3) MUTATED | 29 | 55 | 35 |
DEL PEAK 14(9Q31.3) WILD-TYPE | 80 | 69 | 102 |
Figure S204. Get High-res Image Gene #43: 'del_9q31.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D43V1.png)
P value = 0.0142 (Fisher's exact test), Q value = 0.031
Table S205. Gene #43: 'del_9q31.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 14(9Q31.3) MUTATED | 22 | 48 | 49 |
DEL PEAK 14(9Q31.3) WILD-TYPE | 66 | 119 | 66 |
Figure S205. Get High-res Image Gene #43: 'del_9q31.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D43V2.png)
P value = 0.00285 (Fisher's exact test), Q value = 0.0084
Table S206. Gene #43: 'del_9q31.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 14(9Q31.3) MUTATED | 25 | 34 | 28 | 21 | 10 |
DEL PEAK 14(9Q31.3) WILD-TYPE | 36 | 63 | 40 | 48 | 59 |
Figure S206. Get High-res Image Gene #43: 'del_9q31.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D43V3.png)
P value = 0.00034 (Fisher's exact test), Q value = 0.0015
Table S207. Gene #43: 'del_9q31.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 14(9Q31.3) MUTATED | 21 | 16 | 38 | 37 | 6 |
DEL PEAK 14(9Q31.3) WILD-TYPE | 33 | 40 | 76 | 47 | 50 |
Figure S207. Get High-res Image Gene #43: 'del_9q31.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D43V4.png)
P value = 0.0069 (Fisher's exact test), Q value = 0.018
Table S208. Gene #43: 'del_9q31.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 14(9Q31.3) MUTATED | 17 | 30 | 21 | 43 | 5 |
DEL PEAK 14(9Q31.3) WILD-TYPE | 27 | 65 | 35 | 79 | 43 |
Figure S208. Get High-res Image Gene #43: 'del_9q31.3' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D43V6.png)
P value = 0.00022 (Fisher's exact test), Q value = 0.0011
Table S209. Gene #43: 'del_9q31.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 14(9Q31.3) MUTATED | 28 | 26 | 36 | 16 | 5 |
DEL PEAK 14(9Q31.3) WILD-TYPE | 39 | 60 | 63 | 19 | 48 |
Figure S209. Get High-res Image Gene #43: 'del_9q31.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D43V8.png)
P value = 0.0309 (Fisher's exact test), Q value = 0.059
Table S210. Gene #44: 'del_10q23.31' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 15(10Q23.31) MUTATED | 19 | 40 | 38 |
DEL PEAK 15(10Q23.31) WILD-TYPE | 90 | 84 | 99 |
Figure S210. Get High-res Image Gene #44: 'del_10q23.31' versus Molecular Subtype #1: 'CN_CNMF'
![](D44V1.png)
P value = 0.0136 (Fisher's exact test), Q value = 0.03
Table S211. Gene #44: 'del_10q23.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 15(10Q23.31) MUTATED | 28 | 50 | 19 |
DEL PEAK 15(10Q23.31) WILD-TYPE | 60 | 117 | 96 |
Figure S211. Get High-res Image Gene #44: 'del_10q23.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D44V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S212. Gene #44: 'del_10q23.31' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 15(10Q23.31) MUTATED | 35 | 34 | 5 | 15 | 5 |
DEL PEAK 15(10Q23.31) WILD-TYPE | 26 | 63 | 63 | 54 | 64 |
Figure S212. Get High-res Image Gene #44: 'del_10q23.31' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D44V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S213. Gene #44: 'del_10q23.31' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 15(10Q23.31) MUTATED | 27 | 9 | 41 | 11 | 6 |
DEL PEAK 15(10Q23.31) WILD-TYPE | 27 | 47 | 73 | 73 | 50 |
Figure S213. Get High-res Image Gene #44: 'del_10q23.31' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D44V4.png)
P value = 0.0314 (Fisher's exact test), Q value = 0.059
Table S214. Gene #44: 'del_10q23.31' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
DEL PEAK 15(10Q23.31) MUTATED | 25 | 35 | 7 | 30 |
DEL PEAK 15(10Q23.31) WILD-TYPE | 40 | 92 | 42 | 94 |
Figure S214. Get High-res Image Gene #44: 'del_10q23.31' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D44V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S215. Gene #44: 'del_10q23.31' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 15(10Q23.31) MUTATED | 15 | 41 | 13 | 25 | 3 |
DEL PEAK 15(10Q23.31) WILD-TYPE | 29 | 54 | 43 | 97 | 45 |
Figure S215. Get High-res Image Gene #44: 'del_10q23.31' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D44V6.png)
P value = 0.0496 (Fisher's exact test), Q value = 0.085
Table S216. Gene #44: 'del_10q23.31' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 15(10Q23.31) MUTATED | 35 | 22 | 30 | 7 |
DEL PEAK 15(10Q23.31) WILD-TYPE | 57 | 65 | 89 | 35 |
Figure S216. Get High-res Image Gene #44: 'del_10q23.31' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D44V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S217. Gene #44: 'del_10q23.31' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 15(10Q23.31) MUTATED | 21 | 39 | 19 | 13 | 2 |
DEL PEAK 15(10Q23.31) WILD-TYPE | 46 | 47 | 80 | 22 | 51 |
Figure S217. Get High-res Image Gene #44: 'del_10q23.31' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D44V8.png)
P value = 0.00864 (Fisher's exact test), Q value = 0.021
Table S218. Gene #45: 'del_10q26.13' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 16(10Q26.13) MUTATED | 19 | 41 | 45 |
DEL PEAK 16(10Q26.13) WILD-TYPE | 90 | 83 | 92 |
Figure S218. Get High-res Image Gene #45: 'del_10q26.13' versus Molecular Subtype #1: 'CN_CNMF'
![](D45V1.png)
P value = 0.048 (Fisher's exact test), Q value = 0.083
Table S219. Gene #45: 'del_10q26.13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 16(10Q26.13) MUTATED | 32 | 49 | 24 |
DEL PEAK 16(10Q26.13) WILD-TYPE | 56 | 118 | 91 |
Figure S219. Get High-res Image Gene #45: 'del_10q26.13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D45V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S220. Gene #45: 'del_10q26.13' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 16(10Q26.13) MUTATED | 34 | 37 | 9 | 17 | 5 |
DEL PEAK 16(10Q26.13) WILD-TYPE | 27 | 60 | 59 | 52 | 64 |
Figure S220. Get High-res Image Gene #45: 'del_10q26.13' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D45V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S221. Gene #45: 'del_10q26.13' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 16(10Q26.13) MUTATED | 30 | 11 | 41 | 14 | 6 |
DEL PEAK 16(10Q26.13) WILD-TYPE | 24 | 45 | 73 | 70 | 50 |
Figure S221. Get High-res Image Gene #45: 'del_10q26.13' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D45V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S222. Gene #45: 'del_10q26.13' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 16(10Q26.13) MUTATED | 14 | 45 | 12 | 31 | 3 |
DEL PEAK 16(10Q26.13) WILD-TYPE | 30 | 50 | 44 | 91 | 45 |
Figure S222. Get High-res Image Gene #45: 'del_10q26.13' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D45V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S223. Gene #45: 'del_10q26.13' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 16(10Q26.13) MUTATED | 22 | 41 | 24 | 13 | 2 |
DEL PEAK 16(10Q26.13) WILD-TYPE | 45 | 45 | 75 | 22 | 51 |
Figure S223. Get High-res Image Gene #45: 'del_10q26.13' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D45V8.png)
P value = 0.0109 (Fisher's exact test), Q value = 0.025
Table S224. Gene #46: 'del_11q14.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 17(11Q14.1) MUTATED | 22 | 36 | 19 |
DEL PEAK 17(11Q14.1) WILD-TYPE | 87 | 88 | 118 |
Figure S224. Get High-res Image Gene #46: 'del_11q14.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D46V1.png)
P value = 0.00045 (Fisher's exact test), Q value = 0.0019
Table S225. Gene #46: 'del_11q14.1' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 17(11Q14.1) MUTATED | 33 | 12 | 16 | 10 |
DEL PEAK 17(11Q14.1) WILD-TYPE | 59 | 75 | 103 | 32 |
Figure S225. Get High-res Image Gene #46: 'del_11q14.1' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D46V7.png)
P value = 0.0128 (Fisher's exact test), Q value = 0.029
Table S226. Gene #46: 'del_11q14.1' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 17(11Q14.1) MUTATED | 23 | 21 | 15 | 6 | 6 |
DEL PEAK 17(11Q14.1) WILD-TYPE | 44 | 65 | 84 | 29 | 47 |
Figure S226. Get High-res Image Gene #46: 'del_11q14.1' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D46V8.png)
P value = 0.00433 (Fisher's exact test), Q value = 0.012
Table S227. Gene #47: 'del_11q24.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 18(11Q24.2) MUTATED | 24 | 45 | 26 |
DEL PEAK 18(11Q24.2) WILD-TYPE | 85 | 79 | 111 |
Figure S227. Get High-res Image Gene #47: 'del_11q24.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D47V1.png)
P value = 0.00061 (Fisher's exact test), Q value = 0.0024
Table S228. Gene #47: 'del_11q24.2' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 18(11Q24.2) MUTATED | 38 | 17 | 21 | 11 |
DEL PEAK 18(11Q24.2) WILD-TYPE | 54 | 70 | 98 | 31 |
Figure S228. Get High-res Image Gene #47: 'del_11q24.2' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D47V7.png)
P value = 5e-04 (Fisher's exact test), Q value = 0.002
Table S229. Gene #47: 'del_11q24.2' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 18(11Q24.2) MUTATED | 29 | 27 | 19 | 5 | 7 |
DEL PEAK 18(11Q24.2) WILD-TYPE | 38 | 59 | 80 | 30 | 46 |
Figure S229. Get High-res Image Gene #47: 'del_11q24.2' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D47V8.png)
P value = 0.00057 (Fisher's exact test), Q value = 0.0023
Table S230. Gene #48: 'del_12p12.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 19(12P12.1) MUTATED | 16 | 41 | 21 |
DEL PEAK 19(12P12.1) WILD-TYPE | 93 | 83 | 116 |
Figure S230. Get High-res Image Gene #48: 'del_12p12.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D48V1.png)
P value = 0.00197 (Fisher's exact test), Q value = 0.0063
Table S231. Gene #48: 'del_12p12.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 19(12P12.1) MUTATED | 24 | 24 | 10 | 10 | 10 |
DEL PEAK 19(12P12.1) WILD-TYPE | 37 | 73 | 58 | 59 | 59 |
Figure S231. Get High-res Image Gene #48: 'del_12p12.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D48V3.png)
P value = 0.0302 (Fisher's exact test), Q value = 0.058
Table S232. Gene #48: 'del_12p12.1' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 19(12P12.1) MUTATED | 14 | 27 | 8 | 21 | 6 |
DEL PEAK 19(12P12.1) WILD-TYPE | 30 | 68 | 48 | 101 | 42 |
Figure S232. Get High-res Image Gene #48: 'del_12p12.1' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D48V6.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.001
Table S233. Gene #49: 'del_12q24.33' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 20(12Q24.33) MUTATED | 9 | 34 | 16 |
DEL PEAK 20(12Q24.33) WILD-TYPE | 100 | 90 | 121 |
Figure S233. Get High-res Image Gene #49: 'del_12q24.33' versus Molecular Subtype #1: 'CN_CNMF'
![](D49V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S234. Gene #50: 'del_13q14.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 21(13Q14.2) MUTATED | 35 | 92 | 52 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 74 | 32 | 85 |
Figure S234. Get High-res Image Gene #50: 'del_13q14.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D50V1.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.0014
Table S235. Gene #50: 'del_13q14.2' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 21(13Q14.2) MUTATED | 38 | 52 | 38 | 29 | 19 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 23 | 45 | 30 | 40 | 50 |
Figure S235. Get High-res Image Gene #50: 'del_13q14.2' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D50V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S236. Gene #50: 'del_13q14.2' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 21(13Q14.2) MUTATED | 34 | 15 | 67 | 46 | 14 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 20 | 41 | 47 | 38 | 42 |
Figure S236. Get High-res Image Gene #50: 'del_13q14.2' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D50V4.png)
P value = 0.00233 (Fisher's exact test), Q value = 0.0072
Table S237. Gene #50: 'del_13q14.2' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
DEL PEAK 21(13Q14.2) MUTATED | 41 | 49 | 19 | 68 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 24 | 78 | 30 | 56 |
Figure S237. Get High-res Image Gene #50: 'del_13q14.2' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D50V5.png)
P value = 0.00067 (Fisher's exact test), Q value = 0.0026
Table S238. Gene #50: 'del_13q14.2' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 21(13Q14.2) MUTATED | 28 | 53 | 26 | 59 | 11 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 16 | 42 | 30 | 63 | 37 |
Figure S238. Get High-res Image Gene #50: 'del_13q14.2' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D50V6.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S239. Gene #50: 'del_13q14.2' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 21(13Q14.2) MUTATED | 38 | 51 | 45 | 22 | 12 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 29 | 35 | 54 | 13 | 41 |
Figure S239. Get High-res Image Gene #50: 'del_13q14.2' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D50V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S240. Gene #51: 'del_14q23.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 22(14Q23.3) MUTATED | 21 | 78 | 32 |
DEL PEAK 22(14Q23.3) WILD-TYPE | 88 | 46 | 105 |
Figure S240. Get High-res Image Gene #51: 'del_14q23.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D51V1.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.00078
Table S241. Gene #51: 'del_14q23.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 22(14Q23.3) MUTATED | 36 | 25 | 28 | 23 | 17 |
DEL PEAK 22(14Q23.3) WILD-TYPE | 25 | 72 | 40 | 46 | 52 |
Figure S241. Get High-res Image Gene #51: 'del_14q23.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D51V3.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00037
Table S242. Gene #51: 'del_14q23.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 22(14Q23.3) MUTATED | 34 | 12 | 38 | 32 | 13 |
DEL PEAK 22(14Q23.3) WILD-TYPE | 20 | 44 | 76 | 52 | 43 |
Figure S242. Get High-res Image Gene #51: 'del_14q23.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D51V4.png)
P value = 0.00621 (Fisher's exact test), Q value = 0.017
Table S243. Gene #51: 'del_14q23.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 22(14Q23.3) MUTATED | 47 | 31 | 33 | 14 |
DEL PEAK 22(14Q23.3) WILD-TYPE | 45 | 56 | 86 | 28 |
Figure S243. Get High-res Image Gene #51: 'del_14q23.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D51V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S244. Gene #52: 'del_14q32.33' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 23(14Q32.33) MUTATED | 20 | 77 | 35 |
DEL PEAK 23(14Q32.33) WILD-TYPE | 89 | 47 | 102 |
Figure S244. Get High-res Image Gene #52: 'del_14q32.33' versus Molecular Subtype #1: 'CN_CNMF'
![](D52V1.png)
P value = 0.00035 (Fisher's exact test), Q value = 0.0015
Table S245. Gene #52: 'del_14q32.33' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 23(14Q32.33) MUTATED | 35 | 25 | 28 | 25 | 17 |
DEL PEAK 23(14Q32.33) WILD-TYPE | 26 | 72 | 40 | 44 | 52 |
Figure S245. Get High-res Image Gene #52: 'del_14q32.33' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D52V3.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00065
Table S246. Gene #52: 'del_14q32.33' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 23(14Q32.33) MUTATED | 33 | 12 | 36 | 35 | 14 |
DEL PEAK 23(14Q32.33) WILD-TYPE | 21 | 44 | 78 | 49 | 42 |
Figure S246. Get High-res Image Gene #52: 'del_14q32.33' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D52V4.png)
P value = 0.0143 (Fisher's exact test), Q value = 0.031
Table S247. Gene #52: 'del_14q32.33' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 23(14Q32.33) MUTATED | 43 | 35 | 31 | 16 |
DEL PEAK 23(14Q32.33) WILD-TYPE | 49 | 52 | 88 | 26 |
Figure S247. Get High-res Image Gene #52: 'del_14q32.33' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D52V7.png)
P value = 0.0311 (Fisher's exact test), Q value = 0.059
Table S248. Gene #52: 'del_14q32.33' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 23(14Q32.33) MUTATED | 31 | 25 | 39 | 17 | 13 |
DEL PEAK 23(14Q32.33) WILD-TYPE | 36 | 61 | 60 | 18 | 40 |
Figure S248. Get High-res Image Gene #52: 'del_14q32.33' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D52V8.png)
P value = 0.0353 (Fisher's exact test), Q value = 0.066
Table S249. Gene #53: 'del_15q26.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 24(15Q26.3) MUTATED | 17 | 36 | 26 |
DEL PEAK 24(15Q26.3) WILD-TYPE | 92 | 88 | 111 |
Figure S249. Get High-res Image Gene #53: 'del_15q26.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D53V1.png)
P value = 0.00422 (Fisher's exact test), Q value = 0.012
Table S250. Gene #53: 'del_15q26.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 24(15Q26.3) MUTATED | 24 | 18 | 16 | 11 | 9 |
DEL PEAK 24(15Q26.3) WILD-TYPE | 37 | 79 | 52 | 58 | 60 |
Figure S250. Get High-res Image Gene #53: 'del_15q26.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D53V3.png)
P value = 0.00896 (Fisher's exact test), Q value = 0.022
Table S251. Gene #53: 'del_15q26.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 24(15Q26.3) MUTATED | 21 | 6 | 22 | 19 | 10 |
DEL PEAK 24(15Q26.3) WILD-TYPE | 33 | 50 | 92 | 65 | 46 |
Figure S251. Get High-res Image Gene #53: 'del_15q26.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D53V4.png)
P value = 0.00141 (Fisher's exact test), Q value = 0.0049
Table S252. Gene #53: 'del_15q26.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 24(15Q26.3) MUTATED | 29 | 12 | 19 | 15 |
DEL PEAK 24(15Q26.3) WILD-TYPE | 63 | 75 | 100 | 27 |
Figure S252. Get High-res Image Gene #53: 'del_15q26.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D53V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S253. Gene #54: 'del_16q23.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 25(16Q23.1) MUTATED | 45 | 78 | 39 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 64 | 46 | 98 |
Figure S253. Get High-res Image Gene #54: 'del_16q23.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D54V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S254. Gene #54: 'del_16q23.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 25(16Q23.1) MUTATED | 28 | 60 | 74 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 60 | 107 | 41 |
Figure S254. Get High-res Image Gene #54: 'del_16q23.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D54V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S255. Gene #54: 'del_16q23.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 25(16Q23.1) MUTATED | 32 | 42 | 58 | 18 | 10 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 29 | 55 | 10 | 51 | 59 |
Figure S255. Get High-res Image Gene #54: 'del_16q23.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D54V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S256. Gene #54: 'del_16q23.1' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 25(16Q23.1) MUTATED | 25 | 18 | 52 | 57 | 8 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 29 | 38 | 62 | 27 | 48 |
Figure S256. Get High-res Image Gene #54: 'del_16q23.1' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D54V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S257. Gene #54: 'del_16q23.1' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 25(16Q23.1) MUTATED | 19 | 40 | 33 | 62 | 6 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 25 | 55 | 23 | 60 | 42 |
Figure S257. Get High-res Image Gene #54: 'del_16q23.1' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D54V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S258. Gene #54: 'del_16q23.1' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 25(16Q23.1) MUTATED | 54 | 36 | 36 | 28 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 38 | 51 | 83 | 14 |
Figure S258. Get High-res Image Gene #54: 'del_16q23.1' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D54V7.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S259. Gene #54: 'del_16q23.1' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 25(16Q23.1) MUTATED | 42 | 37 | 50 | 15 | 10 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 25 | 49 | 49 | 20 | 43 |
Figure S259. Get High-res Image Gene #54: 'del_16q23.1' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D54V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S260. Gene #55: 'del_17p13.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 26(17P13.1) MUTATED | 46 | 105 | 75 |
DEL PEAK 26(17P13.1) WILD-TYPE | 63 | 19 | 62 |
Figure S260. Get High-res Image Gene #55: 'del_17p13.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D55V1.png)
P value = 0.0203 (Fisher's exact test), Q value = 0.042
Table S261. Gene #55: 'del_17p13.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 26(17P13.1) MUTATED | 48 | 115 | 63 |
DEL PEAK 26(17P13.1) WILD-TYPE | 40 | 52 | 52 |
Figure S261. Get High-res Image Gene #55: 'del_17p13.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D55V2.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00037
Table S262. Gene #55: 'del_17p13.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 26(17P13.1) MUTATED | 49 | 69 | 36 | 34 | 33 |
DEL PEAK 26(17P13.1) WILD-TYPE | 12 | 28 | 32 | 35 | 36 |
Figure S262. Get High-res Image Gene #55: 'del_17p13.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D55V3.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00033
Table S263. Gene #55: 'del_17p13.1' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 26(17P13.1) MUTATED | 40 | 28 | 85 | 42 | 26 |
DEL PEAK 26(17P13.1) WILD-TYPE | 14 | 28 | 29 | 42 | 30 |
Figure S263. Get High-res Image Gene #55: 'del_17p13.1' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D55V4.png)
P value = 0.00176 (Fisher's exact test), Q value = 0.0058
Table S264. Gene #55: 'del_17p13.1' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
DEL PEAK 26(17P13.1) MUTATED | 53 | 76 | 27 | 68 |
DEL PEAK 26(17P13.1) WILD-TYPE | 12 | 51 | 22 | 56 |
Figure S264. Get High-res Image Gene #55: 'del_17p13.1' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D55V5.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00042
Table S265. Gene #55: 'del_17p13.1' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 26(17P13.1) MUTATED | 38 | 67 | 30 | 66 | 23 |
DEL PEAK 26(17P13.1) WILD-TYPE | 6 | 28 | 26 | 56 | 25 |
Figure S265. Get High-res Image Gene #55: 'del_17p13.1' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D55V6.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S266. Gene #55: 'del_17p13.1' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 26(17P13.1) MUTATED | 36 | 67 | 55 | 31 | 25 |
DEL PEAK 26(17P13.1) WILD-TYPE | 31 | 19 | 44 | 4 | 28 |
Figure S266. Get High-res Image Gene #55: 'del_17p13.1' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D55V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S267. Gene #56: 'del_17p11.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 27(17P11.2) MUTATED | 40 | 90 | 65 |
DEL PEAK 27(17P11.2) WILD-TYPE | 69 | 34 | 72 |
Figure S267. Get High-res Image Gene #56: 'del_17p11.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D56V1.png)
P value = 0.00173 (Fisher's exact test), Q value = 0.0058
Table S268. Gene #56: 'del_17p11.2' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 27(17P11.2) MUTATED | 44 | 57 | 32 | 31 | 28 |
DEL PEAK 27(17P11.2) WILD-TYPE | 17 | 40 | 36 | 38 | 41 |
Figure S268. Get High-res Image Gene #56: 'del_17p11.2' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D56V3.png)
P value = 0.00843 (Fisher's exact test), Q value = 0.021
Table S269. Gene #56: 'del_17p11.2' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 27(17P11.2) MUTATED | 37 | 27 | 68 | 37 | 23 |
DEL PEAK 27(17P11.2) WILD-TYPE | 17 | 29 | 46 | 47 | 33 |
Figure S269. Get High-res Image Gene #56: 'del_17p11.2' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D56V4.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00042
Table S270. Gene #56: 'del_17p11.2' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
DEL PEAK 27(17P11.2) MUTATED | 51 | 61 | 22 | 59 |
DEL PEAK 27(17P11.2) WILD-TYPE | 14 | 66 | 27 | 65 |
Figure S270. Get High-res Image Gene #56: 'del_17p11.2' versus Molecular Subtype #5: 'MIRSEQ_CNMF'
![](D56V5.png)
P value = 0.00023 (Fisher's exact test), Q value = 0.0011
Table S271. Gene #56: 'del_17p11.2' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
DEL PEAK 27(17P11.2) MUTATED | 36 | 54 | 25 | 56 | 22 |
DEL PEAK 27(17P11.2) WILD-TYPE | 8 | 41 | 31 | 66 | 26 |
Figure S271. Get High-res Image Gene #56: 'del_17p11.2' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'
![](D56V6.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.0014
Table S272. Gene #56: 'del_17p11.2' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 27(17P11.2) MUTATED | 32 | 54 | 47 | 29 | 22 |
DEL PEAK 27(17P11.2) WILD-TYPE | 35 | 32 | 52 | 6 | 31 |
Figure S272. Get High-res Image Gene #56: 'del_17p11.2' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D56V8.png)
P value = 0.00177 (Fisher's exact test), Q value = 0.0058
Table S273. Gene #57: 'del_18q21.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 28(18Q21.2) MUTATED | 21 | 46 | 27 |
DEL PEAK 28(18Q21.2) WILD-TYPE | 88 | 78 | 110 |
Figure S273. Get High-res Image Gene #57: 'del_18q21.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D57V1.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.0011
Table S274. Gene #57: 'del_18q21.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 28(18Q21.2) MUTATED | 14 | 35 | 45 |
DEL PEAK 28(18Q21.2) WILD-TYPE | 74 | 132 | 70 |
Figure S274. Get High-res Image Gene #57: 'del_18q21.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D57V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S275. Gene #57: 'del_18q21.2' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 28(18Q21.2) MUTATED | 9 | 5 | 28 | 39 | 13 |
DEL PEAK 28(18Q21.2) WILD-TYPE | 45 | 51 | 86 | 45 | 43 |
Figure S275. Get High-res Image Gene #57: 'del_18q21.2' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D57V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S276. Gene #58: 'del_19p13.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 29(19P13.3) MUTATED | 18 | 51 | 18 |
DEL PEAK 29(19P13.3) WILD-TYPE | 91 | 73 | 119 |
Figure S276. Get High-res Image Gene #58: 'del_19p13.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D58V1.png)
P value = 0.00029 (Fisher's exact test), Q value = 0.0014
Table S277. Gene #58: 'del_19p13.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 29(19P13.3) MUTATED | 29 | 18 | 15 | 12 | 12 |
DEL PEAK 29(19P13.3) WILD-TYPE | 32 | 79 | 53 | 57 | 57 |
Figure S277. Get High-res Image Gene #58: 'del_19p13.3' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D58V3.png)
P value = 0.00238 (Fisher's exact test), Q value = 0.0072
Table S278. Gene #58: 'del_19p13.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 29(19P13.3) MUTATED | 22 | 9 | 23 | 25 | 7 |
DEL PEAK 29(19P13.3) WILD-TYPE | 32 | 47 | 91 | 59 | 49 |
Figure S278. Get High-res Image Gene #58: 'del_19p13.3' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D58V4.png)
P value = 0.0211 (Fisher's exact test), Q value = 0.043
Table S279. Gene #58: 'del_19p13.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
DEL PEAK 29(19P13.3) MUTATED | 32 | 19 | 20 | 12 |
DEL PEAK 29(19P13.3) WILD-TYPE | 60 | 68 | 99 | 30 |
Figure S279. Get High-res Image Gene #58: 'del_19p13.3' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'
![](D58V7.png)
P value = 0.00264 (Fisher's exact test), Q value = 0.0079
Table S280. Gene #58: 'del_19p13.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
DEL PEAK 29(19P13.3) MUTATED | 25 | 21 | 18 | 13 | 6 |
DEL PEAK 29(19P13.3) WILD-TYPE | 42 | 65 | 81 | 22 | 47 |
Figure S280. Get High-res Image Gene #58: 'del_19p13.3' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D58V8.png)
P value = 0.0452 (Fisher's exact test), Q value = 0.08
Table S281. Gene #59: 'del_20p12.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 30(20P12.1) MUTATED | 12 | 4 | 13 |
DEL PEAK 30(20P12.1) WILD-TYPE | 97 | 120 | 124 |
Figure S281. Get High-res Image Gene #59: 'del_20p12.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D59V1.png)
P value = 0.0295 (Fisher's exact test), Q value = 0.057
Table S282. Gene #60: 'del_22q12.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 31(22Q12.1) MUTATED | 14 | 30 | 35 |
DEL PEAK 31(22Q12.1) WILD-TYPE | 95 | 94 | 102 |
Figure S282. Get High-res Image Gene #60: 'del_22q12.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D60V1.png)
P value = 0.00197 (Fisher's exact test), Q value = 0.0063
Table S283. Gene #60: 'del_22q12.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 31(22Q12.1) MUTATED | 25 | 21 | 9 | 14 | 10 |
DEL PEAK 31(22Q12.1) WILD-TYPE | 36 | 76 | 59 | 55 | 59 |
Figure S283. Get High-res Image Gene #60: 'del_22q12.1' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D60V3.png)
P value = 0.00525 (Fisher's exact test), Q value = 0.014
Table S284. Gene #61: 'del_22q13.32' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 32(22Q13.32) MUTATED | 13 | 33 | 37 |
DEL PEAK 32(22Q13.32) WILD-TYPE | 96 | 91 | 100 |
Figure S284. Get High-res Image Gene #61: 'del_22q13.32' versus Molecular Subtype #1: 'CN_CNMF'
![](D61V1.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S285. Gene #61: 'del_22q13.32' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
DEL PEAK 32(22Q13.32) MUTATED | 27 | 27 | 7 | 12 | 10 |
DEL PEAK 32(22Q13.32) WILD-TYPE | 34 | 70 | 61 | 57 | 59 |
Figure S285. Get High-res Image Gene #61: 'del_22q13.32' versus Molecular Subtype #3: 'MRNASEQ_CNMF'
![](D61V3.png)
P value = 0.0096 (Fisher's exact test), Q value = 0.023
Table S286. Gene #61: 'del_22q13.32' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
DEL PEAK 32(22Q13.32) MUTATED | 16 | 6 | 36 | 16 | 9 |
DEL PEAK 32(22Q13.32) WILD-TYPE | 38 | 50 | 78 | 68 | 47 |
Figure S286. Get High-res Image Gene #61: 'del_22q13.32' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'
![](D61V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S287. Gene #62: 'del_xq26.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
DEL PEAK 33(XQ26.2) MUTATED | 8 | 39 | 20 |
DEL PEAK 33(XQ26.2) WILD-TYPE | 101 | 85 | 117 |
Figure S287. Get High-res Image Gene #62: 'del_xq26.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D62V1.png)
P value = 0.0466 (Fisher's exact test), Q value = 0.081
Table S288. Gene #62: 'del_xq26.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
DEL PEAK 33(XQ26.2) MUTATED | 9 | 31 | 27 |
DEL PEAK 33(XQ26.2) WILD-TYPE | 79 | 136 | 88 |
Figure S288. Get High-res Image Gene #62: 'del_xq26.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D62V2.png)
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Copy number data file = all_lesions.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LIHC-TP/15089885/transformed.cor.cli.txt
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Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LIHC-TP/15111045/LIHC-TP.transferedmergedcluster.txt
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Number of patients = 370
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Number of significantly focal cnvs = 62
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Number of molecular subtypes = 8
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Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.