[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  RPPA_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
                          Clinical feature           
DAYS_TO_DEATH_OR_LAST_FUP "DAYS_TO_DEATH_OR_LAST_FUP"
YEARS_TO_BIRTH            "YEARS_TO_BIRTH"           
PATHOLOGIC_STAGE          "PATHOLOGIC_STAGE"         
PATHOLOGY_T_STAGE         "PATHOLOGY_T_STAGE"        
PATHOLOGY_N_STAGE         "PATHOLOGY_N_STAGE"        
GENDER                    "GENDER"                   
RADIATION_THERAPY         "RADIATION_THERAPY"        
RESIDUAL_TUMOR            "RESIDUAL_TUMOR"           
NUMBER_OF_LYMPH_NODES     "NUMBER_OF_LYMPH_NODES"    
ETHNICITY                 "ETHNICITY"                
                          Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP "Cox regression test"       "N=30"           
YEARS_TO_BIRTH            "Spearman correlation test" "N=2"            
PATHOLOGIC_STAGE          "Kruskal-Wallis test"       "N=30"           
PATHOLOGY_T_STAGE         "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE         "Wilcoxon test"             "N=0"            
GENDER                    "Wilcoxon test"             "N=13"           
RADIATION_THERAPY         "Wilcoxon test"             "N=14"           
RESIDUAL_TUMOR            "Kruskal-Wallis test"       "N=0"            
NUMBER_OF_LYMPH_NODES     "Spearman correlation test" "N=0"            
ETHNICITY                 "Wilcoxon test"             "N=0"            
                          Associated with   
DAYS_TO_DEATH_OR_LAST_FUP "shorter survival"
YEARS_TO_BIRTH            "older"           
PATHOLOGIC_STAGE          " "               
PATHOLOGY_T_STAGE         "higher stage"    
PATHOLOGY_N_STAGE         " "               
GENDER                    "male"            
RADIATION_THERAPY         "yes"             
RESIDUAL_TUMOR            " "               
NUMBER_OF_LYMPH_NODES     " "               
ETHNICITY                 " "               
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP "N=15"                                                                                    
YEARS_TO_BIRTH            "N=1"                                                                                     
PATHOLOGIC_STAGE          " "                                                                                       
PATHOLOGY_T_STAGE         "N=15"                                                                                    
PATHOLOGY_N_STAGE         " "                                                                                       
GENDER                    "N=13"                                                                                    
RADIATION_THERAPY         "N=14"                                                                                    
RESIDUAL_TUMOR            " "                                                                                       
NUMBER_OF_LYMPH_NODES     " "                                                                                       
ETHNICITY                 " "                                                                                       
                          Associated with         
DAYS_TO_DEATH_OR_LAST_FUP "longer survival" "N=15"
YEARS_TO_BIRTH            "younger"         "N=1" 
PATHOLOGIC_STAGE          " "               " "   
PATHOLOGY_T_STAGE         "lower stage"     "N=15"
PATHOLOGY_N_STAGE         " "               " "   
GENDER                    "female"          "N=0" 
RADIATION_THERAPY         "no"              "N=0" 
RESIDUAL_TUMOR            " "               " "   
NUMBER_OF_LYMPH_NODES     " "               " "   
ETHNICITY                 " "               " "   
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
