gene1	gene2	pval	qval
FGFR3	Amp_10p14	0.000166	1
TP53	9p-Del	0.000523	1
9q-Del	Amp_6p22.3	0.000529	1
FGFR3	RB1	0.000756	1
Amp_3p25.2	Del_9p21.3	0.00089	1
ATM	20p-Amp	0.00154	1
Del_9p21.3	Del_13q14.2	0.00159	1
FGFR3	Amp_8q22.3	0.00173	1
5p-Amp	Del_9p21.3	0.00221	1
PIK3CA	Amp_7p21.1	0.0026	1
NFE2L2	Amp_6p22.3	0.00319	1
Amp_5p15.33	Del_9p21.3	0.00331	1
FGFR3	8q-Amp	0.00346	1
TSC1	Amp_6p22.3	0.0035	1
Amp_10p14	Del_9p21.3	0.00366	1
ATM	20q-Amp	0.00415	1
ARID1A	FGFR3	0.00456	1
RB1	Del_3p14.2	0.00486	1
FGFR3	Amp_3p25.2	0.00554	1
STAG2	Amp_10p14	0.00568	1
FGFR3	Amp_16p13.2	0.00682	1
STAG2	Amp_7p11.2	0.00688	1
CDKN1A	Amp_8p11.21	0.00741	1
NFE2L2	RB1	0.00759	1
FGFR3	MLL	0.00801	1
FGFR3	Del_22q13.32	0.00931	1
ARID1B	9p-Del	0.00936	1
FGFR3	Amp_1p34.2	0.00954	1
Amp_7p21.1	Del_9p21.3	0.0097	1
ERCC2	Del_9p21.3	0.0108	1
FGFR3	Amp_6p22.3	0.0109	1
PARD3	9p-Del	0.0115	1
FBXW7	Amp_5p15.33	0.0118	1
TP53	Del_9p23	0.0122	1
KDM6A	Amp_10p14	0.0124	1
RHOA	Amp_1q21.3	0.0132	1
ARID1B	9q-Del	0.0135	1
KLF5	9q-Del	0.0135	1
ELF3	Amp_19q12	0.0138	1
FAT1	Amp_5p15.33	0.0154	1
RHOB	Del_16p13.3	0.0157	1
FAT1	Amp_12q15	0.016	1
FAT1	Amp_13q22.1	0.016	1
PARD3	Del_5q12.1	0.0164	1
Amp_4q13.3	Del_9p21.3	0.0169	1
RB1	Del_11p15.5	0.0172	1
THRAP3	Amp_5p15.33	0.0173	1
CDKN1A	TP53	0.0175	1
CDKN1A	8q-Amp	0.0179	1
ATM	Del_2q34	0.0181	1
RB1	Amp_11q13.3	0.0184	1
EP300	SPTAN1	0.0187	1
11p-Del	Amp_7p11.2	0.0187	1
ARID1B	Del_9p23	0.0194	1
FBXW7	Amp_19q12	0.0194	1
KDM6A	MLL2	0.0204	1
MLL	6q-Del	0.0206	1
EP300	11p-Del	0.021	1
9p-Del	Amp_6p22.3	0.0218	1
CSMD3	22q-Del	0.0219	1
FAT1	KDM6A	0.022	1
MLL	Del_11q25	0.0225	1
FBXW7	Amp_17q23.3	0.0232	1
PIK3CA	Amp_11q13.3	0.024	1
TSC1	Amp_8q22.3	0.0257	1
ARID1B	FGFR3	0.0258	1
9p-Del	Amp_7p11.2	0.0264	1
ELF3	Amp_10p14	0.0265	1
SHANK1	9p-Del	0.0266	1
CREBBP	Amp_11q13.3	0.0267	1
CSMD3	Del_2q37.1	0.0277	1
KDM6A	Amp_5p15.33	0.0294	1
HRAS	Del_11p15.5	0.0295	1
ATM	Amp_10p14	0.0297	1
ATM	Del_6q27	0.0298	1
MLL3	Del_9p23	0.0298	1
STAG2	Amp_6p22.3	0.0298	1
FGFR3	PARD3	0.0304	1
ATM	Del_17p12	0.031	1
FGFR3	Amp_7p11.2	0.0316	1
SPTAN1	Del_16p13.3	0.0316	1
KLF5	Del_4q34.2	0.0319	1
HES1	TP53	0.0321	1
TP53	ZBTB7B	0.0321	1
NFE2L2	Amp_3p25.2	0.0322	1
TSC1	Del_4q22.1	0.0327	1
MLL2	RBM10	0.0331	1
NF2	Del_9p21.3	0.0334	1
ATM	Amp_17q23.3	0.0337	1
ATM	FGFR3	0.0343	1
TSC1	Del_2q37.1	0.0344	1
TSC1	Del_16p13.3	0.0344	1
17p-Del	Amp_6p22.3	0.0344	1
RUNX1	Del_9p23	0.0346	1
MLL2	Del_9p23	0.0353	1
KDM6A	RB1	0.0355	1
FBXW7	5p-Amp	0.0356	1
CNOT1	Del_16p13.3	0.0358	1
RAI1	Amp_8p11.23	0.0358	1
MLL	STAG2	0.036	1
STAG2	Amp_12q15	0.036	1
MLL2	18q-Del	0.0366	1
FAT1	Amp_19q12	0.0368	1
DNAH6	TP53	0.0371	1
ARID1A	NFE2L2	0.0377	1
NFE2L2	Amp_5p15.33	0.0377	1
MLL3	Amp_8q22.3	0.0383	1
KLF5	Amp_3p25.2	0.0391	1
NFE2L2	Amp_19q12	0.0393	1
7p-Amp	Del_11q23.3	0.0393	1
EP300	Del_9p21.3	0.0394	1
SHANK1	5p-Amp	0.0395	1
Amp_16p13.2	Del_9p21.3	0.04	1
Amp_6p22.3	Amp_11q13.3	0.0402	1
Amp_7p11.2	Del_9p23	0.0404	1
CSMD3	Del_22q13.32	0.0408	1
TSC1	Del_10q23.31	0.0408	1
ERBB2	8q-Amp	0.0412	1
CDKN1A	Amp_8q22.3	0.0419	1
ZFP36L1	9p-Del	0.0422	1
Amp_11q22.2	Del_6q27	0.0422	1
18q-Del	Amp_1p34.2	0.0424	1
MLL3	Amp_17q23.3	0.0433	1
TXNIP	Del_9p21.3	0.0433	1
CSMD3	Del_2q34	0.0435	1
IDH1	Del_8p21.3	0.0437	1
CDKN2A	Amp_12q15	0.0438	1
CDKN2A	Amp_13q22.1	0.0438	1
9q-Del	Amp_8q22.3	0.0438	1
3q-Amp	5q-Del	0.044	1
SHANK1	17p-Del	0.0442	1
KDM6A	10q-Del	0.0443	1
PARD3	Del_9p21.3	0.0443	1
ARID1A	Amp_19q13.43	0.0452	1
KRAS	TP53	0.0452	1
KDM6A	NF2	0.0455	1
CREBBP	Del_9p21.3	0.0465	1
ATM	Amp_12q15	0.0482	1
IDH1	Del_8p23.3	0.0482	1
CSMD3	Del_11q23.3	0.0488	1
KRAS	Amp_20q11.21	0.0488	1
PIK3CA	17q-Amp	0.0488	1
RB1	11p-Del	0.0492	1
CREBBP	9p-Del	0.0497	1
ATM	6q-Del	0.0505	1
CREBBP	Amp_20q11.21	0.0509	1
ATM	Amp_20q11.21	0.0512	1
Del_9p23	Del_13q14.2	0.0512	1
SPTAN1	5p-Amp	0.0513	1
ARID1B	Del_3p14.2	0.0518	1
KLF5	Del_3p14.2	0.0518	1
TSC1	10q-Del	0.053	1
MLL	18q-Del	0.0536	1
ELF3	Amp_6p22.3	0.0541	1
HRAS	Del_13q14.2	0.0543	1
KDM6A	Amp_16p13.2	0.0543	1
CSMD3	Del_2q22.1	0.0548	1
FAT1	Del_8p23.3	0.0549	1
MLL3	Del_13q14.2	0.0553	1
RB1	8q-Amp	0.0556	1
NFE2L2	Del_6p25.3	0.0562	1
CREBBP	Del_11q25	0.0565	1
ELF3	RB1	0.0568	1
RPTN	Amp_10p14	0.0568	1
HRAS	5p-Amp	0.0571	1
ERBB2	Amp_10p14	0.0575	1
TP53	19q-Amp	0.058	1
ZFP36L1	9q-Del	0.0583	1
CTNNB1	Del_8p23.3	0.0585	1
Amp_5p15.33	Del_12p13.1	0.0586	1
ARID1B	SPTAN1	0.0594	1
FBXW7	Del_19p13.3	0.0596	1
11q-Del	Amp_1p34.2	0.0596	1
16p-Del	Del_9p21.3	0.0596	1
FBXW7	FGFR3	0.0598	1
PIK3CA	Amp_16p13.2	0.0601	1
CSMD3	Del_8p21.3	0.061	1
NF2	Del_17p12	0.0621	1
IDH1	KDM6A	0.0622	1
HRAS	Amp_5p15.33	0.0624	1
HRAS	11p-Del	0.063	1
RHOA	Del_9p21.3	0.0632	1
ZNF185	Del_9p21.3	0.0639	1
FBXW7	TP53	0.0642	1
MLL	Del_11q23.3	0.0642	1
Del_9p21.3	Del_16q23.1	0.0645	1
ARID1A	20p-Amp	0.0654	1
11p-Del	Amp_5p15.33	0.0654	1
FAT1	5p-Amp	0.0655	1
CREBBP	Amp_3p25.2	0.0661	1
DNAH6	8q-Amp	0.0662	1
FBXW7	Amp_8q22.3	0.0662	1
ZFP36L1	5p-Amp	0.0662	1
ZFP36L1	Del_14q24.1	0.0666	1
10q-Del	Del_9p21.3	0.0671	1
STAG2	Del_2q37.1	0.0672	1
CNOT1	ELF3	0.0675	1
RBM10	Del_3p14.2	0.0675	1
STAG2	Del_16p13.3	0.0675	1
EP300	Amp_10p14	0.0677	1
ARID1B	Del_22q13.32	0.0681	1
RXRA	9q-Del	0.0683	1
CUL1	STAG2	0.0685	1
FGFR3	METTL3	0.0685	1
STAG2	3p-Amp	0.0685	1
FGFR3	Amp_5p15.33	0.0687	1
ERBB2	9q-Del	0.0691	1
KLF5	Del_8p23.3	0.0691	1
GNA13	Amp_3p25.2	0.0695	1
MLL	11p-Del	0.0695	1
ARID1A	9q-Del	0.0713	1
FGFR3	Del_13q14.2	0.0715	1
PTEN	8p-Del	0.0721	1
THRAP3	8p-Del	0.0721	1
TSC1	Amp_7p21.1	0.0724	1
RAI1	Amp_5p15.33	0.0726	1
ERBB3	KLF5	0.0728	1
NFE2L2	TP53	0.073	1
RUNX1	9p-Del	0.0742	1
NFE2L2	Del_14q24.1	0.0746	1
11q-Del	Amp_7p11.2	0.0746	1
MLL2	Del_Xp11.3	0.0747	1
ZFP36L1	17p-Del	0.075	1
ATM	TP53	0.0751	1
KLF5	8p-Del	0.0753	1
NF2	Del_9p23	0.0761	1
STAG2	Amp_17q23.3	0.0766	1
ARID1A	CDKN2A	0.0774	1
PKHD1	Del_2q22.1	0.0779	1
Amp_6p22.3	Del_9p23	0.078	1
ZBTB7B	Amp_20q11.21	0.0783	1
TSC1	Del_3p14.2	0.0784	1
CSMD3	Del_8p23.3	0.0785	1
CSMD3	HRAS	0.0805	1
FGFR3	HRAS	0.0805	1
ARID1B	Del_9p21.3	0.0809	1
RHOA	Del_11q23.3	0.0809	1
7p-Amp	Del_9p21.3	0.0809	1
MLL2	11q-Del	0.081	1
MLL	11q-Del	0.0811	1
TP53	Amp_4p16.3	0.0817	1
Del_9p21.3	Del_22q13.32	0.0822	1
FGFR3	Amp_3q26.33	0.0829	1
STAG2	Amp_3q26.33	0.0829	1
Amp_1q23.3	Del_Xp11.3	0.0833	1
ARID1B	18q-Del	0.0834	1
ARID1A	20q-Amp	0.0835	1
KDM6A	NFE2L2	0.0838	1
Amp_10p14	Del_Xp11.3	0.0839	1
MLL2	Amp_12q15	0.0845	1
MLL2	Del_6p25.3	0.0845	1
KDM6A	Amp_4p16.3	0.0846	1
PIK3CA	Amp_1p34.2	0.0846	1
FGFR3	Amp_17q12	0.0848	1
PIK3CA	Amp_5p15.33	0.0861	1
CNOT1	20p-Amp	0.0866	1
17p-Del	Amp_11q22.2	0.0867	1
PSIP1	Amp_7p11.2	0.0868	1
15q-Del	Amp_7p11.2	0.0868	1
ELF3	Del_15q13.1	0.0874	1
HLA-A	Del_8p21.3	0.0882	1
NFE2L2	Amp_1q21.3	0.0885	1
HRAS	Del_10q23.31	0.0888	1
CDKN1A	ZFP36L1	0.0892	1
ERCC2	4q-Del	0.0892	1
CTNNB1	17p-Del	0.0896	1
EP300	1q-Amp	0.0896	1
PTEN	11p-Del	0.0896	1
ATM	CREBBP	0.0904	1
CREBBP	PKHD1	0.0904	1
PKHD1	Amp_7p21.1	0.0904	1
PKHD1	Del_11q25	0.0904	1
THRAP3	Del_9p21.3	0.0909	1
KRAS	9q-Del	0.091	1
KRAS	Del_5q12.1	0.091	1
RUNX1	9q-Del	0.091	1
RUNX1	Del_5q12.1	0.091	1
TXNIP	Del_9p23	0.0917	1
ATM	Del_16p13.3	0.0918	1
KIAA1267	Amp_17q12	0.092	1
PSIP1	Amp_13q22.1	0.092	1
22q-Del	Amp_17q12	0.092	1
9q-Del	Amp_10p14	0.0925	1
ELF3	Del_16q23.1	0.0926	1
MLL2	9p-Del	0.0926	1
ERCC2	9q-Del	0.0929	1
ARID1A	Del_19p13.3	0.093	1
PARD3	9q-Del	0.093	1
PARD3	Del_9p23	0.093	1
HRAS	Del_4q34.2	0.0932	1
PARD3	18q-Del	0.0932	1
CUL1	Del_11q23.3	0.0933	1
CTNNB1	Del_18q23	0.0936	1
11q-Del	Amp_8q22.3	0.0942	1
FGFR3	Amp_4q13.3	0.0946	1
STAG2	19q-Amp	0.0946	1
RHOA	Del_11q25	0.095	1
ATM	14q-Del	0.0952	1
CDKN1A	Del_16p13.3	0.0953	1
11q-Del	Amp_8p11.23	0.0953	1
PKHD1	5p-Amp	0.0956	1
ERBB3	11q-Del	0.0957	1
RB1	5q-Del	0.0957	1
NF1	Del_5q12.1	0.0958	1
ATM	Del_2q37.1	0.0964	1
RAI1	Amp_10p14	0.0977	1
FBXW7	Amp_8p11.21	0.0981	1
CUL1	Amp_8p11.21	0.0982	1
CUL1	Del_2q22.1	0.0982	1
NFE2L2	Amp_20q11.21	0.0984	1
5q-Del	Amp_11q22.2	0.0986	1
FBXW7	Amp_1p34.2	0.0987	1
NF2	Amp_20q11.21	0.099	1
ARID1A	19p-Del	0.1	1
ARID1B	11p-Del	0.1	1
ELF3	MLL2	0.1	1
KLF5	17p-Del	0.1	1
ZBTB7B	Del_2q37.1	0.1	1
Amp_5p15.33	Del_1p36.11	0.1	1
SPTAN1	Amp_5p15.33	0.101	1
SPTAN1	Amp_7p11.2	0.101	1
CSMD3	ZFP36L1	0.102	1
FGFR3	Amp_22q12.2	0.102	1
7p-Amp	Amp_17q12	0.102	1
10q-Del	Amp_7p11.2	0.102	1
CNOT1	8p-Del	0.103	1
HRAS	Del_2q34	0.103	1
KDM6A	KLF5	0.103	1
KDM6A	Del_Xp11.3	0.103	1
KLF5	TP53	0.103	1
RAI1	8p-Del	0.103	1
18q-Del	Amp_17q12	0.103	1
ERCC2	Del_9p23	0.104	1
FAM47C	18q-Del	0.104	1
HRAS	TP53	0.104	1
5p-Amp	Del_12p13.1	0.104	1
Amp_3q26.33	Amp_4q13.3	0.104	1
Amp_4p16.3	Del_6p25.3	0.104	1
Amp_4p16.3	Del_16q23.1	0.104	1
FAT1	Amp_10p14	0.106	1
FGFR3	Amp_13q22.1	0.106	1
FGFR3	Del_6p25.3	0.106	1
KDM6A	RHOA	0.106	1
KIAA1267	Amp_19q13.43	0.106	1
STAG2	Amp_13q22.1	0.106	1
CSMD3	Del_11p15.5	0.107	1
STAG2	Amp_19q13.43	0.107	1
TSC1	Del_22q13.32	0.107	1
CNOT1	9q-Del	0.108	1
CNOT1	Del_8p23.3	0.108	1
DNAH6	20q-Amp	0.108	1
ERBB2	20q-Amp	0.108	1
NF1	4p-Del	0.108	1
PIK3CA	Amp_7p11.2	0.108	1
Del_9p23	Del_16q23.1	0.108	1
ARID1B	5q-Del	0.109	1
C3orf70	Amp_7p21.1	0.109	1
CREBBP	11p-Del	0.109	1
CUL1	Amp_7p21.1	0.109	1
CUL1	Del_11q25	0.109	1
FBXW7	Del_5q12.1	0.109	1
MLL2	9q-Del	0.109	1
7p-Amp	Del_19p13.3	0.109	1
CDKN1A	Amp_3q26.33	0.11	1
MLL2	Amp_22q12.2	0.11	1
9p-Del	Amp_10p14	0.11	1
9q-Del	Amp_7p11.2	0.11	1
CTNNB1	FGFR3	0.111	1
FGFR3	FOXQ1	0.111	1
FGFR3	PTEN	0.111	1
MLL2	11p-Del	0.111	1
STAG2	Del_1p36.11	0.111	1
THRAP3	Amp_8p11.23	0.111	1
Amp_1p34.2	Del_6q27	0.112	1
Amp_1p34.2	Del_11q25	0.112	1
FBXW7	Amp_6p22.3	0.113	1
NF2	Del_11p15.5	0.113	1
TSC1	16p-Del	0.113	1
PIK3CA	Amp_1q23.3	0.114	1
PSIP1	Amp_10p14	0.114	1
RBM10	Del_13q14.2	0.114	1
FAT1	8p-Del	0.115	1
PARD3	11p-Del	0.115	1
ERBB3	Amp_4p16.3	0.116	1
FBXW7	4p-Del	0.116	1
FGFR3	22q-Del	0.116	1
HLA-A	KDM6A	0.116	1
KIAA1267	Amp_8p11.23	0.116	1
KLF5	Amp_19q13.43	0.116	1
RB1	Amp_4p16.3	0.116	1
RXRA	Amp_8p11.23	0.116	1
NF1	RHOB	0.117	1
RBM10	Amp_1q23.3	0.117	1
9p-Del	Amp_7p21.1	0.117	1
CNOT1	Del_4q22.1	0.118	1
CREBBP	Del_11q23.3	0.118	1
EP300	Del_11p15.5	0.118	1
ERBB2	HRAS	0.118	1
HRAS	Amp_19q12	0.118	1
RBM10	Del_4q22.1	0.118	1
5p-Amp	Del_1q32.1	0.118	1
Amp_7p21.1	Del_11q23.3	0.118	1
CREBBP	Del_18q23	0.119	1
MLL	Del_9p21.3	0.119	1
PARD3	11q-Del	0.12	1
RHOA	Del_2q37.1	0.12	1
5q-Del	Del_12p13.1	0.12	1
CTNNB1	Del_10q23.31	0.121	1
HRAS	Del_8p23.3	0.121	1
KIAA1267	3q-Amp	0.121	1
MLL	Del_6p25.3	0.121	1
NFE2L2	Del_11p15.5	0.121	1
ATM	Amp_22q12.2	0.122	1
EP300	17p-Del	0.122	1
HRAS	Amp_6p22.3	0.122	1
NFE2L2	Del_8p21.3	0.122	1
PIK3CA	Amp_4q13.3	0.122	1
DNAH6	Del_9p21.3	0.123	1
FAT1	FGFR3	0.123	1
FAT1	STAG2	0.123	1
MLL	9q-Del	0.123	1
MLL	Del_5q12.1	0.123	1
TSC1	Del_8p23.3	0.123	1
9q-Del	Del_16q23.1	0.123	1
CDKN2A	RB1	0.124	1
CREBBP	DNAH6	0.124	1
CREBBP	HRAS	0.124	1
CREBBP	18q-Del	0.124	1
HRAS	Del_6q27	0.124	1
MLL	Amp_11q13.3	0.124	1
RB1	TSC1	0.124	1
RHOA	Del_22q13.32	0.124	1
TSC1	4q-Del	0.124	1
ZBTB7B	Amp_10p14	0.124	1
ERBB2	Amp_8q22.3	0.125	1
C3orf70	Amp_7p11.2	0.126	1
CUL1	Amp_7p11.2	0.126	1
METTL3	Amp_7p11.2	0.126	1
CSMD3	8p-Del	0.127	1
EP300	Del_1q32.1	0.127	1
STAG2	8p-Del	0.127	1
TXNIP	Amp_20q11.21	0.127	1
17q-Amp	17p-Del	0.127	1
CDKN2A	20q-Amp	0.129	1
FAT1	RHOB	0.129	1
STAG2	Amp_5p15.33	0.129	1
FGFR3	RUNX1	0.13	1
NFE2L2	Amp_16p13.2	0.13	1
FGFR3	MLL2	0.131	1
HRAS	Amp_1q23.3	0.131	1
KDM6A	SPTAN1	0.131	1
UNC93B1	Del_9p21.3	0.131	1
EP300	RBM10	0.132	1
FGFR3	7p-Amp	0.132	1
GNA13	KDM6A	0.132	1
GNA13	8q-Amp	0.132	1
KLF5	Del_16p13.3	0.132	1
MBD1	Del_18q23	0.132	1
ARID1A	TP53	0.133	1
ARID1B	6q-Del	0.133	1
CNNM4	Del_9p21.3	0.133	1
ERBB3	Amp_10p14	0.133	1
KLF5	10q-Del	0.133	1
RAI1	5q-Del	0.133	1
Amp_11q13.3	Del_2q34	0.133	1
Amp_12q15	Del_13q14.2	0.133	1
Amp_16p13.2	Del_9p23	0.133	1
ARID1A	NRAS	0.134	1
FGFR3	Del_15q13.1	0.134	1
MLL2	Amp_11q22.2	0.134	1
SPTAN1	Amp_8q22.3	0.134	1
FGFR3	Amp_8p11.21	0.135	1
KLF5	Amp_5p15.33	0.135	1
PIK3CA	SCARF2	0.135	1
SHANK1	Amp_5p15.33	0.135	1
TSC1	Del_14q24.1	0.135	1
NF2	9p-Del	0.136	1
20q-Amp	Del_13q14.2	0.136	1
ATM	16p-Del	0.137	1
ATM	22q-Del	0.137	1
CDKN2A	Amp_8p11.21	0.137	1
MLL3	Del_16p13.3	0.137	1
RB1	18q-Del	0.137	1
TSC1	Amp_1q23.3	0.137	1
Amp_11q22.2	Del_4q34.2	0.137	1
ASXL2	15q-Del	0.138	1
CDKN1A	KDM6A	0.138	1
CSMD3	9q-Del	0.138	1
CTNNB1	Del_9p23	0.139	1
MLL2	3q-Amp	0.139	1
MLL2	6q-Del	0.139	1
PLCXD3	Amp_1q23.3	0.139	1
SPTAN1	TP53	0.139	1
C3orf70	Del_22q13.32	0.14	1
KLF5	Del_11p15.5	0.141	1
MLL3	16p-Del	0.141	1
MLL3	22q-Del	0.141	1
MLL3	Amp_11q22.2	0.141	1
PIK3CA	20p-Amp	0.141	1
RBM10	Amp_19q13.43	0.141	1
KLF5	Amp_16p13.2	0.142	1
RPTN	Del_6q27	0.142	1
TP53	11p-Del	0.142	1
ZBTB7B	Amp_1q23.3	0.142	1
18q-Del	Amp_6p22.3	0.142	1
Amp_4q13.3	Del_11q25	0.142	1
Amp_8q22.3	Del_9p21.3	0.142	1
ASXL2	Amp_8p11.21	0.143	1
CDKN1A	Amp_3p25.2	0.143	1
FAT1	PTEN	0.143	1
HRAS	SPTAN1	0.143	1
1q-Amp	20q-Amp	0.143	1
Amp_17q12	Del_19p13.3	0.143	1
CREBBP	PIK3CA	0.144	1
FAT1	Amp_6p22.3	0.144	1
RAI1	Del_9p21.3	0.144	1
KDM6A	18q-Del	0.145	1
PARD3	3q-Amp	0.145	1
FAT1	11q-Del	0.146	1
KLF5	Amp_3q26.33	0.146	1
ATM	Del_22q13.32	0.147	1
FBXW7	8q-Amp	0.147	1
RPTN	Amp_6p22.3	0.147	1
20q-Amp	5p-Amp	0.147	1
7q-Amp	Del_19p13.3	0.147	1
ERBB2	FGFR3	0.148	1
MLL3	Del_6p25.3	0.148	1
STAG2	Amp_19q12	0.148	1
20p-Amp	Del_13q14.2	0.148	1
KDM6A	Del_18q23	0.149	1
KIAA1267	Amp_1p34.2	0.149	1
PARD3	Del_16p13.3	0.149	1
PIK3CA	1q-Amp	0.149	1
PKHD1	STAG2	0.149	1
TSC1	Amp_10p14	0.149	1
CSMD3	FGFR3	0.15	1
CSMD3	STAG2	0.15	1
CSMD3	Del_16p13.3	0.15	1
DNAH6	Amp_13q22.1	0.15	1
FAM47C	TSC1	0.15	1
FGFR3	Del_16p13.3	0.15	1
HRAS	Amp_13q22.1	0.15	1
CREBBP	Del_11p15.5	0.151	1
ARID1A	Del_9p21.3	0.152	1
HES1	11p-Del	0.152	1
HES1	17p-Del	0.152	1
MLL3	Amp_10p14	0.152	1
NF1	4q-Del	0.152	1
RXRA	TP53	0.152	1
11p-Del	Amp_6q21	0.152	1
CDKN2A	8p-Del	0.153	1
ERBB3	Del_11p15.5	0.153	1
ERCC2	RHOA	0.153	1
ERCC2	9p-Del	0.153	1
IDH1	Del_2q37.1	0.153	1
NFE2L2	Amp_1q23.3	0.153	1
NFE2L2	Del_2q34	0.153	1
STAG2	17q-Amp	0.153	1
ZFP36L1	Del_2q22.1	0.153	1
EP300	Amp_20q11.21	0.154	1
19p-Del	Amp_6p22.3	0.154	1
FAT1	Amp_7p11.2	0.155	1
KLF5	Del_17p12	0.155	1
PSIP1	Amp_19q13.43	0.155	1
DNAH6	20p-Amp	0.157	1
MLL2	Del_11q25	0.157	1
TXNIP	20p-Amp	0.157	1
ZBTB7B	Del_18q23	0.157	1
20p-Amp	Amp_1p34.2	0.157	1
CDKN2A	Del_9p21.3	0.158	1
CSMD3	18q-Del	0.158	1
STAG2	18q-Del	0.158	1
ZFP36L1	14q-Del	0.158	1
ARID1A	17q-Amp	0.159	1
CNOT1	10q-Del	0.159	1
FAM47C	3q-Amp	0.159	1
GNA13	Amp_5p15.33	0.159	1
NF2	9q-Del	0.159	1
SF1	9q-Del	0.159	1
Amp_5p15.33	Del_Xq21.33	0.159	1
C3orf70	9p-Del	0.16	1
CUL1	9p-Del	0.16	1
METTL3	RB1	0.16	1
PKHD1	18q-Del	0.16	1
18q-Del	Amp_16p13.2	0.16	1
9p-Del	Amp_16p13.2	0.16	1
FGFR3	Amp_1q23.3	0.161	1
Amp_17q12	Del_2q37.1	0.161	1
ARID1B	Del_2q37.1	0.162	1
C3orf70	18q-Del	0.162	1
FAT1	Amp_11q22.2	0.162	1
FBXW7	4q-Del	0.162	1
HRAS	KDM6A	0.162	1
KLF5	Amp_1p34.2	0.162	1
PTEN	Del_11q25	0.162	1
RB1	SPTAN1	0.162	1
THRAP3	Del_11q25	0.162	1
7p-Amp	Amp_1p34.2	0.162	1
FGFR3	Amp_7p21.1	0.163	1
STAG2	5p-Amp	0.163	1
ARID1A	CUL1	0.164	1
C3orf70	Amp_5p15.33	0.164	1
MBD1	Amp_3q26.33	0.164	1
MLL	17p-Del	0.164	1
MLL2	Del_19p13.3	0.164	1
17p-Del	Amp_12q15	0.164	1
Amp_7p11.2	Del_9p21.3	0.164	1
CREBBP	Amp_17q23.3	0.165	1
FAT1	KRAS	0.165	1
KRAS	20q-Amp	0.165	1
KRAS	Del_11q23.3	0.165	1
NF1	Del_12p13.1	0.165	1
PARD3	Amp_3q26.33	0.165	1
PARD3	Amp_11q13.3	0.165	1
METTL3	TP53	0.166	1
NF1	Amp_8p11.23	0.166	1
PIK3CA	Del_16p13.3	0.166	1
TSC1	Del_2q34	0.166	1
UNC93B1	Del_9p23	0.166	1
18q-Del	Amp_10p14	0.166	1
DNAH6	Del_2q37.1	0.167	1
IDH1	9p-Del	0.167	1
CDKN1A	Amp_19q12	0.168	1
Amp_11q13.3	Del_2q37.1	0.168	1
CTNNB1	ELF3	0.169	1
ELF3	PTEN	0.169	1
FAM47C	FGFR3	0.169	1
MLL	20q-Amp	0.169	1
SHANK1	9q-Del	0.169	1
18q-Del	Amp_12q15	0.169	1
9q-Del	Amp_7p21.1	0.169	1
Del_9p21.3	Del_10q23.31	0.169	1
ATM	17q-Amp	0.17	1
KRAS	Del_9p23	0.17	1
RHOA	Amp_17q12	0.17	1
RHOB	Amp_22q12.2	0.17	1
SHANK1	Amp_17q12	0.17	1
19q-Amp	Amp_3p25.2	0.17	1
EP300	Del_11q23.3	0.171	1
KLF5	Del_2q34	0.171	1
NFE2L2	14q-Del	0.171	1
NFE2L2	Amp_8p11.21	0.171	1
RXRA	Del_9p23	0.171	1
ATM	Del_8p21.3	0.172	1
CREBBP	Amp_22q12.2	0.172	1
ERBB2	Amp_11q13.3	0.173	1
Amp_11q13.3	Amp_19q12	0.173	1
EP300	Amp_4p16.3	0.174	1
PSIP1	6q-Del	0.174	1
ZFP36L1	8p-Del	0.174	1
CTNNB1	Del_8p21.3	0.175	1
RB1	Amp_8q22.3	0.175	1
SCARF2	Del_11p15.5	0.175	1
ASXL2	Del_3p14.2	0.176	1
MLL	8q-Amp	0.176	1
PARD3	Amp_1p34.2	0.176	1
TSC1	20q-Amp	0.177	1
TSC1	Del_11q23.3	0.177	1
MLL	4p-Del	0.178	1
STAG2	Del_3p14.2	0.178	1
TSC1	Del_13q14.2	0.178	1
Amp_1p34.2	Del_9p23	0.178	1
CREBBP	11q-Del	0.179	1
FGFR3	Amp_6q21	0.179	1
HES1	Amp_8p11.23	0.179	1
RHOA	11q-Del	0.179	1
ZBTB7B	Del_16p13.3	0.179	1
11q-Del	Amp_7p21.1	0.179	1
15q-Del	Amp_6p22.3	0.179	1
C3orf70	Amp_10p14	0.18	1
CNNM4	11p-Del	0.18	1
CNNM4	17p-Del	0.18	1
ERBB2	KIAA1267	0.18	1
FAT1	KLF5	0.18	1
KLF5	Del_11q23.3	0.18	1
MBD1	Del_9p21.3	0.18	1
MLL	9p-Del	0.18	1
NF2	11p-Del	0.18	1
NF2	17p-Del	0.18	1
RB1	Amp_12q15	0.18	1
9p-Del	Del_16q23.1	0.18	1
Amp_11q13.3	Del_13q14.2	0.18	1
MLL3	Del_17p12	0.181	1
PIK3CA	Del_Xp11.3	0.181	1
STAG2	Amp_8q22.3	0.181	1
ASXL2	6q-Del	0.182	1
MLL	Del_2q22.1	0.182	1
CTNNB1	SPTAN1	0.183	1
FOXA1	SPTAN1	0.183	1
FOXQ1	SPTAN1	0.183	1
RHOB	16p-Del	0.183	1
TMCO4	Del_2q34	0.183	1
ZFP36L1	Del_5q12.1	0.183	1
ARID1B	4p-Del	0.184	1
CDKN2A	Amp_7p11.2	0.184	1
FAT1	20p-Amp	0.184	1
FAT1	8q-Amp	0.184	1
MLL2	17p-Del	0.184	1
PKHD1	15q-Del	0.184	1
TSC1	Amp_3p25.2	0.184	1
CSMD3	FBXW7	0.185	1
FAT1	Del_2q34	0.185	1
KRAS	Amp_7p21.1	0.185	1
KRAS	Del_6q27	0.185	1
KRAS	Del_11q25	0.185	1
RUNX1	Amp_7p21.1	0.185	1
Del_9p21.3	Del_16p13.3	0.185	1
CREBBP	Del_2q37.1	0.186	1
HRAS	RB1	0.186	1
HRAS	9p-Del	0.186	1
KLF5	9p-Del	0.186	1
RB1	7p-Amp	0.186	1
RBM10	Del_10q23.31	0.186	1
TXNIP	9p-Del	0.186	1
8q-Amp	4p-Del	0.186	1
IDH1	8p-Del	0.187	1
PIK3CA	Amp_11q22.2	0.187	1
ASXL2	3p-Amp	0.188	1
NFE2L2	Amp_10p14	0.188	1
RXRA	Amp_10p14	0.188	1
ARID1A	CDKN1A	0.189	1
TSC1	Del_2q22.1	0.189	1
11q-Del	Amp_5p15.33	0.189	1
ARID1B	Del_2q22.1	0.19	1
FAT1	Amp_3p25.2	0.19	1
FAT1	Del_Xq21.33	0.19	1
FBXW7	18q-Del	0.19	1
GNA13	20q-Amp	0.19	1
GNA13	Del_11q23.3	0.19	1
NFE2L2	Amp_7p21.1	0.19	1
RBM10	Amp_1p34.2	0.19	1
RXRA	Amp_7p21.1	0.19	1
CSMD3	11p-Del	0.191	1
CSMD3	15q-Del	0.191	1
FGFR3	7q-Amp	0.191	1
FGFR3	15q-Del	0.191	1
FOXQ1	Amp_12q15	0.191	1
HES1	Amp_11q13.3	0.191	1
HES1	Del_10q23.31	0.191	1
NUDT11	Amp_1q21.3	0.191	1
PSIP1	Amp_8p11.23	0.191	1
PTEN	Amp_12q15	0.191	1
THRAP3	Del_8p23.3	0.191	1
ZBTB7B	Amp_3q26.33	0.191	1
ZBTB7B	Del_10q23.31	0.191	1
1q-Amp	Amp_13q22.1	0.191	1
1q-Amp	Del_8p23.3	0.191	1
10q-Del	Amp_4p16.3	0.191	1
Amp_6q21	Amp_11q13.3	0.191	1
CDKN1A	Amp_17q23.3	0.192	1
ERBB2	Amp_20q11.21	0.192	1
IDH1	9q-Del	0.192	1
IDH1	Del_5q12.1	0.192	1
KRAS	Del_3p14.2	0.192	1
Amp_20q11.21	Del_4q22.1	0.192	1
ATM	18q-Del	0.194	1
ATM	Del_14q24.1	0.194	1
C3orf70	9q-Del	0.194	1
CUL1	9q-Del	0.194	1
SPTAN1	Amp_7p21.1	0.194	1
ZNF185	Amp_1q23.3	0.194	1
ERBB2	Amp_13q22.1	0.195	1
ERBB2	Del_16q23.1	0.195	1
FAM47C	Del_4q34.2	0.195	1
FAT1	10q-Del	0.195	1
FBXW7	PIK3CA	0.195	1
NUDT11	Amp_6p22.3	0.195	1
5p-Amp	Del_6q27	0.195	1
CREBBP	Amp_19q13.43	0.196	1
KDM6A	Amp_11q22.2	0.196	1
NFE2L2	ZFP36L1	0.196	1
RXRA	ZFP36L1	0.196	1
C3orf70	Del_19p13.3	0.197	1
CUL1	11q-Del	0.197	1
GNA13	Del_2q22.1	0.197	1
3p-Amp	5q-Del	0.197	1
ARID1A	HES1	0.198	1
CDKN2A	11p-Del	0.198	1
HRAS	Del_4q22.1	0.198	1
Del_6p25.3	Del_9p21.3	0.198	1
EP300	SHANK1	0.199	1
ERCC2	Amp_11q13.3	0.199	1
FOXQ1	Del_22q13.32	0.199	1
RHOA	Del_8p23.3	0.199	1
1q-Amp	20p-Amp	0.199	1
Amp_3p25.2	Del_9p23	0.199	1
Amp_12q15	Del_4q22.1	0.199	1
ERBB3	4p-Del	0.2	1
NUDT11	Amp_20q11.21	0.2	1
PLCXD3	Del_9p21.3	0.2	1
UNC93B1	Amp_20q11.21	0.2	1
ZFP36L1	Del_9p21.3	0.2	1
ASXL2	Amp_7p11.2	0.201	1
FAT1	PARD3	0.201	1
PARD3	20q-Amp	0.201	1
PARD3	Del_11q23.3	0.201	1
PIK3CA	Amp_19q13.43	0.201	1
PKHD1	Amp_4p16.3	0.201	1
Amp_4p16.3	Amp_16p13.2	0.201	1
SPTAN1	Amp_22q12.2	0.202	1
ARID1A	MLL2	0.203	1
CREBBP	Del_4q34.2	0.203	1
FAT1	Del_11p15.5	0.203	1
FOXA1	Amp_1q23.3	0.203	1
MLL3	Amp_19q13.43	0.203	1
TSC1	Del_8p21.3	0.203	1
9p-Del	Amp_1p34.2	0.203	1
C3orf70	Del_9p21.3	0.204	1
RB1	SCARF2	0.204	1
SCARF2	9p-Del	0.204	1
ELF3	Del_10q23.31	0.205	1
ERBB2	9p-Del	0.205	1
MLL	Del_9p23	0.205	1
17p-Del	Amp_19q12	0.205	1
Amp_10p14	Del_4q22.1	0.205	1
Amp_17q23.3	Del_2q37.1	0.205	1
CDKN2A	20p-Amp	0.206	1
MLL3	Amp_6p22.3	0.206	1
STAG2	Del_18q23	0.206	1
ATM	Del_8p23.3	0.207	1
FBXW7	15q-Del	0.207	1
FBXW7	Amp_3q26.33	0.207	1
KRAS	SPTAN1	0.207	1
KRAS	Amp_7p11.2	0.207	1
RUNX1	Amp_7p11.2	0.207	1
7q-Amp	Amp_1p34.2	0.207	1
Amp_1p34.2	Amp_11q13.3	0.207	1
SHANK1	Del_15q13.1	0.208	1
ELF3	Amp_19q13.43	0.209	1
NFE2L2	RXRA	0.209	1
NFE2L2	16p-Del	0.209	1
NFE2L2	Amp_11q22.2	0.209	1
3q-Amp	5p-Amp	0.209	1
22q-Del	Amp_11q22.2	0.209	1
4p-Del	Amp_8q22.3	0.209	1
Amp_7p11.2	Del_11p15.5	0.209	1
ARID1B	Amp_7p21.1	0.21	1
ARID1B	Del_6q27	0.21	1
ARID1B	Del_11q25	0.21	1
C3orf70	5p-Amp	0.21	1
CNNM4	CSMD3	0.21	1
CREBBP	MLL	0.21	1
CREBBP	Amp_12q15	0.21	1
CREBBP	Amp_13q22.1	0.21	1
CREBBP	Del_6p25.3	0.21	1
ERCC2	19q-Amp	0.21	1
FGFR3	NF2	0.21	1
KLF5	Amp_7p21.1	0.21	1
KLF5	Del_11q25	0.21	1
METTL3	5p-Amp	0.21	1
MLL	Del_6q27	0.21	1
NF1	Amp_10p14	0.21	1
ZFP36L1	4q-Del	0.21	1
3p-Amp	5p-Amp	0.21	1
7p-Amp	Del_11q25	0.21	1
4q-Del	Amp_22q12.2	0.21	1
9q-Del	Amp_5p15.33	0.21	1
ASXL2	Amp_8p11.23	0.211	1
CREBBP	TMCO4	0.211	1
CREBBP	Del_Xq21.33	0.211	1
CSMD3	SPTAN1	0.211	1
GNA13	Amp_7p21.1	0.211	1
MBD1	Amp_7p21.1	0.211	1
SPTAN1	STAG2	0.211	1
SPTAN1	8p-Del	0.211	1
STAG2	Amp_17q12	0.211	1
ZBTB7B	Del_2q34	0.211	1
Amp_7p21.1	Del_1q32.1	0.211	1
ERBB2	20p-Amp	0.212	1
ERBB3	MLL2	0.212	1
PARD3	RB1	0.212	1
CTNNB1	TP53	0.213	1
TP53	1q-Amp	0.213	1
TP53	Del_1p36.11	0.213	1
20p-Amp	Del_4q22.1	0.213	1
5p-Amp	Amp_17q23.3	0.213	1
5p-Amp	Amp_20q11.21	0.213	1
5p-Amp	Del_3p14.2	0.213	1
4q-Del	Amp_10p14	0.213	1
ARID1A	Amp_22q12.2	0.214	1
CNOT1	4p-Del	0.214	1
EP300	IDH1	0.214	1
FAM47C	4p-Del	0.214	1
MLL	ZFP36L1	0.214	1
MLL	Amp_5p15.33	0.214	1
NUDT11	Amp_3p25.2	0.214	1
TSC1	Del_6q27	0.214	1
ZFP36L1	Amp_5p15.33	0.214	1
ZFP36L1	Amp_12q15	0.214	1
CSMD3	Amp_4p16.3	0.215	1
KRAS	Del_6p25.3	0.215	1
RUNX1	Amp_13q22.1	0.215	1
ZBTB7B	Del_17p12	0.215	1
HRAS	8p-Del	0.216	1
NFE2L2	Del_13q14.2	0.216	1
PIK3CA	7p-Amp	0.216	1
RXRA	Del_13q14.2	0.216	1
DNAH6	11q-Del	0.217	1
DNAH6	Del_19p13.3	0.217	1
HRAS	5q-Del	0.217	1
HRAS	Del_19p13.3	0.217	1
TSC1	3p-Amp	0.217	1
Amp_11q13.3	Del_4q22.1	0.217	1
ARID1A	STAG2	0.218	1
CDKN1A	Amp_7p11.2	0.218	1
FAT1	HES1	0.218	1
FAT1	Amp_6q21	0.218	1
HES1	20q-Amp	0.218	1
HLA-A	Del_11p15.5	0.218	1
ZBTB7B	20q-Amp	0.218	1
ZBTB7B	Del_11q23.3	0.218	1
Amp_6q21	Del_11q23.3	0.218	1
Amp_10p14	Amp_12q15	0.218	1
FGFR3	Amp_1q21.3	0.219	1
MBD1	Amp_17q23.3	0.219	1
RHOA	Amp_16p13.2	0.219	1
CDKN2A	Amp_1q23.3	0.22	1
NF1	8p-Del	0.221	1
RXRA	Amp_1q21.3	0.221	1
17p-Del	Amp_22q12.2	0.221	1
ARID1B	8p-Del	0.222	1
NFE2L2	SPTAN1	0.222	1
NFE2L2	Amp_7p11.2	0.222	1
RXRA	Amp_7p11.2	0.222	1
SPTAN1	16p-Del	0.222	1
9q-Del	Amp_3p25.2	0.222	1
GNA13	Amp_8q22.3	0.223	1
NF2	Amp_11q13.3	0.223	1
SF1	Amp_11q13.3	0.223	1
ARID1B	16p-Del	0.224	1
ARID1B	22q-Del	0.224	1
CNOT1	20q-Amp	0.224	1
HRAS	9q-Del	0.224	1
HRAS	Del_5q12.1	0.224	1
KIAA1267	KLF5	0.224	1
KLF5	16p-Del	0.224	1
KRAS	20p-Amp	0.224	1
KRAS	Del_22q13.32	0.224	1
TSC1	6q-Del	0.224	1
TXNIP	9q-Del	0.224	1
7p-Amp	16p-Del	0.224	1
ARID1A	Del_18q23	0.225	1
ATM	Amp_3q26.33	0.225	1
CTNNB1	18q-Del	0.225	1
ELF3	Amp_12q15	0.225	1
EP300	Amp_3q26.33	0.225	1
FOXA1	Del_14q24.1	0.225	1
PTEN	18q-Del	0.225	1
ZFP36L1	Del_12p13.1	0.225	1
1q-Amp	18q-Del	0.225	1
1q-Amp	Del_14q24.1	0.225	1
CDKN1A	NF1	0.226	1
HES1	Amp_8p11.21	0.226	1
HES1	Del_2q22.1	0.226	1
NFE2L2	5p-Amp	0.226	1
Amp_6q21	Del_2q22.1	0.226	1
Amp_7p21.1	Del_9p23	0.226	1
CUL1	11p-Del	0.227	1
CUL1	17p-Del	0.227	1
STAG2	Del_2q34	0.227	1
STAG2	Del_8p23.3	0.227	1
TP53	Amp_17q23.3	0.227	1
CSMD3	14q-Del	0.228	1
METTL3	10q-Del	0.228	1
ASXL2	19q-Amp	0.229	1
ASXL2	Del_7q36.3	0.229	1
HLA-A	TP53	0.229	1
FOXA1	MLL3	0.23	1
MLL	Amp_8p11.23	0.23	1
MLL3	Del_1p36.11	0.23	1
PIK3CA	Amp_1q21.3	0.23	1
Amp_17q12	Del_22q13.32	0.23	1
CSMD3	11q-Del	0.231	1
CSMD3	Del_19p13.3	0.231	1
FGFR3	Del_19p13.3	0.231	1
MLL	Del_11p15.5	0.231	1
NF1	RHOA	0.231	1
CREBBP	PARD3	0.232	1
KLF5	Del_5q12.1	0.232	1
CDKN1A	MLL	0.233	1
CREBBP	6q-Del	0.233	1
FGFR3	8p-Del	0.233	1
MLL	5q-Del	0.233	1
NRAS	Del_2q37.1	0.233	1
ZBTB7B	Amp_19q12	0.233	1
11q-Del	Del_16q23.1	0.233	1
Amp_12q15	Del_19p13.3	0.233	1
CNOT1	Del_2q22.1	0.234	1
ERCC2	Del_1p36.11	0.234	1
GNA13	Amp_7p11.2	0.234	1
KIAA1267	Amp_13q22.1	0.234	1
MLL	NFE2L2	0.234	1
MLL	22q-Del	0.234	1
MLL	Amp_11q22.2	0.234	1
NFE2L2	Amp_13q22.1	0.234	1
22q-Del	Amp_12q15	0.234	1
Amp_4p16.3	Del_10q23.31	0.234	1
Amp_7p11.2	Del_1q32.1	0.234	1
C3orf70	8q-Amp	0.235	1
Amp_1p34.2	Amp_10p14	0.235	1
SPTAN1	Amp_19q13.43	0.236	1
RB1	Amp_19q13.43	0.237	1
SCARF2	Del_13q14.2	0.237	1
ARID1A	RPTN	0.238	1
ARID1A	19q-Amp	0.238	1
ARID1A	Del_7q36.3	0.238	1
ERCC2	4p-Del	0.238	1
HRAS	TSC1	0.238	1
Amp_4q13.3	Amp_5p15.33	0.238	1
C3orf70	PIK3CA	0.239	1
CDKN1A	RPTN	0.239	1
CDKN1A	Amp_4q13.3	0.239	1
CUL1	PKHD1	0.239	1
EP300	Del_14q24.1	0.239	1
KIAA1267	Del_12p13.1	0.239	1
KLF5	4q-Del	0.239	1
KRAS	Amp_3p25.2	0.239	1
METTL3	Amp_16p13.2	0.239	1
PARD3	Amp_11q22.2	0.239	1
RPTN	Del_19p13.3	0.239	1
ZNF185	Amp_5p15.33	0.239	1
3p-Amp	Amp_16p13.2	0.239	1
11q-Del	Amp_4q13.3	0.239	1
11q-Del	Del_7q36.3	0.239	1
KDM6A	4p-Del	0.24	1
TSC1	Amp_16p13.2	0.24	1
Amp_8q22.3	Del_11q25	0.24	1
CNOT1	RB1	0.241	1
CNOT1	Amp_22q12.2	0.241	1
CREBBP	HES1	0.241	1
HES1	Amp_7p21.1	0.241	1
HES1	Del_11q25	0.241	1
NF1	Amp_19q13.43	0.241	1
RAI1	9p-Del	0.241	1
ZBTB7B	Del_11q25	0.241	1
Amp_6q21	Del_11q25	0.241	1
ERCC2	18q-Del	0.243	1
FBXW7	RHOA	0.243	1
FGFR3	SHANK1	0.243	1
GNA13	MLL	0.243	1
GNA13	Del_16q23.1	0.243	1
MBD1	MLL	0.243	1
MBD1	Del_16q23.1	0.243	1
PARD3	Amp_17q23.3	0.243	1
RHOA	STAG2	0.243	1
RHOA	Amp_1p34.2	0.243	1
RHOA	Del_16p13.3	0.243	1
SHANK1	STAG2	0.243	1
TP53	TSC1	0.243	1
ATM	17p-Del	0.244	1
ATM	Amp_4p16.3	0.244	1
CREBBP	ERBB3	0.244	1
EP300	8q-Amp	0.244	1
KLF5	Amp_7p11.2	0.244	1
PKHD1	Del_11p15.5	0.244	1
SPTAN1	7p-Amp	0.244	1
8q-Amp	17p-Del	0.244	1
5q-Del	Amp_1p34.2	0.244	1
Amp_1p34.2	Del_19p13.3	0.244	1
ERBB2	RBM10	0.245	1
FAM47C	Amp_19q12	0.245	1
Amp_8p11.23	Del_11q23.3	0.245	1
ARID1A	TSC1	0.246	1
FGFR3	IDH1	0.246	1
NFE2L2	20p-Amp	0.246	1
3q-Amp	Amp_17q23.3	0.246	1
6q-Del	Amp_17q23.3	0.246	1
9q-Del	Del_6p25.3	0.246	1
EP300	RXRA	0.247	1
KIAA1267	11p-Del	0.247	1
ARID1A	Amp_11q22.2	0.248	1
CDKN1A	20p-Amp	0.248	1
FAT1	7q-Amp	0.248	1
FAT1	15q-Del	0.248	1
STAG2	TP53	0.248	1
7q-Amp	Del_11q23.3	0.248	1
DNAH6	3q-Amp	0.249	1
HES1	Del_3p14.2	0.249	1
HLA-A	RB1	0.249	1
HRAS	10q-Del	0.249	1
HRAS	6q-Del	0.249	1
HRAS	Del_15q13.1	0.249	1
STAG2	Amp_20q11.21	0.249	1
UNC93B1	9p-Del	0.249	1
ZBTB7B	Amp_17q23.3	0.249	1
ZBTB7B	Del_3p14.2	0.249	1
22q-Del	Del_9p21.3	0.249	1
4p-Del	Amp_4p16.3	0.249	1
KRAS	18q-Del	0.25	1
KRAS	Amp_1q23.3	0.25	1
KRAS	Del_14q24.1	0.25	1
RUNX1	18q-Del	0.25	1
TP53	11q-Del	0.25	1
CDKN2A	FGFR3	0.251	1
CNNM4	20q-Amp	0.251	1
CREBBP	20q-Amp	0.251	1
FAT1	SF1	0.251	1
FAT1	Del_8p21.3	0.251	1
GNA13	20p-Amp	0.251	1
MLL	Del_17p12	0.251	1
NF2	20q-Amp	0.251	1
NF2	Del_11q23.3	0.251	1
SF1	20q-Amp	0.251	1
TMCO4	Del_22q13.32	0.251	1
ZBTB7B	Del_9p23	0.251	1
14q-Del	Amp_11q13.3	0.251	1
CTNNB1	RB1	0.252	1
CTNNB1	9p-Del	0.252	1
ELF3	Del_2q34	0.252	1
FOXQ1	RB1	0.252	1
KDM6A	5q-Del	0.252	1
PLCXD3	Amp_20q11.21	0.252	1
PTEN	9p-Del	0.252	1
RB1	Del_1p36.11	0.252	1
ASXL2	THRAP3	0.253	1
ASXL2	Del_1p36.11	0.253	1
CREBBP	Amp_16p13.2	0.253	1
FAT1	Amp_8q22.3	0.253	1
KLF5	5p-Amp	0.253	1
KLF5	Amp_1q21.3	0.253	1
EP300	SCARF2	0.255	1
ERCC2	FAT1	0.255	1
ERCC2	20q-Amp	0.255	1
SCARF2	11p-Del	0.255	1
CNOT1	16p-Del	0.256	1
CREBBP	FAM47C	0.256	1
CUL1	Amp_1q23.3	0.256	1
FAM47C	RXRA	0.256	1
FBXW7	Amp_20q11.21	0.256	1
KLF5	Del_16q23.1	0.256	1
NFE2L2	RBM10	0.256	1
PIK3CA	10q-Del	0.256	1
PKHD1	10q-Del	0.256	1
4q-Del	Del_6p25.3	0.256	1
ATM	Amp_7p11.2	0.257	1
PKHD1	11p-Del	0.257	1
ZFP36L1	Amp_1q23.3	0.257	1
CDKN1A	Del_10q23.31	0.258	1
DNAH6	11p-Del	0.258	1
DNAH6	17p-Del	0.258	1
HRAS	17p-Del	0.258	1
9q-Del	Amp_1p34.2	0.258	1
Amp_11q13.3	Del_19p13.3	0.258	1
ERBB3	NFE2L2	0.259	1
ERBB3	Amp_11q22.2	0.259	1
FBXW7	Amp_19q13.43	0.259	1
NF2	Amp_8p11.21	0.259	1
NF2	Del_2q22.1	0.259	1
PSIP1	ZFP36L1	0.259	1
PSIP1	Amp_22q12.2	0.259	1
SF1	Del_2q22.1	0.259	1
ZFP36L1	15q-Del	0.259	1
7q-Amp	Del_8p21.3	0.259	1
ARID1A	FAT1	0.26	1
ERBB3	MBD1	0.26	1
ERCC2	KRAS	0.26	1
HRAS	Amp_16p13.2	0.26	1
Amp_17q12	Del_9p23	0.26	1
TSC1	Del_7q36.3	0.261	1
Amp_13q22.1	Del_10q23.31	0.261	1
FBXW7	Del_17p12	0.262	1
KLF5	Amp_6p22.3	0.262	1
RHOA	Del_10q23.31	0.262	1
SHANK1	Amp_3q26.33	0.262	1
SHANK1	Amp_11q13.3	0.262	1
ATM	4p-Del	0.263	1
CDKN1A	ERBB3	0.263	1
CUL1	FBXW7	0.263	1
DNAH6	Del_9p23	0.263	1
METTL3	Amp_1p34.2	0.263	1
ARID1A	Del_9p23	0.264	1
CDKN1A	THRAP3	0.264	1
CDKN1A	Del_1p36.11	0.264	1
CTNNB1	5q-Del	0.264	1
CTNNB1	Del_19p13.3	0.264	1
FOXQ1	11q-Del	0.264	1
FOXQ1	5q-Del	0.264	1
FOXQ1	Del_19p13.3	0.264	1
KDM6A	5p-Amp	0.264	1
PTEN	11q-Del	0.264	1
STAG2	Amp_8p11.21	0.264	1
STAG2	Del_2q22.1	0.264	1
THRAP3	11q-Del	0.264	1
1q-Amp	Del_19p13.3	0.264	1
Amp_5p15.33	Del_9p23	0.264	1
HES1	SPTAN1	0.265	1
SPTAN1	ZBTB7B	0.265	1
ERBB2	18q-Del	0.266	1
HLA-A	Amp_10p14	0.266	1
NF2	Amp_19q12	0.266	1
RAI1	Del_9p23	0.266	1
UNC93B1	Amp_10p14	0.266	1
DNAH6	Del_18q23	0.267	1
FAT1	Amp_20q11.21	0.267	1
HRAS	Del_8p21.3	0.267	1
HRAS	Del_18q23	0.267	1
PARD3	SPTAN1	0.267	1
ARID1A	Del_10q23.31	0.268	1
ELF3	FAM47C	0.268	1
ELF3	RAI1	0.268	1
FAM47C	Amp_17q23.3	0.268	1
KRAS	Del_2q37.1	0.268	1
MLL2	Del_11p15.5	0.268	1
MLL3	Amp_8p11.21	0.268	1
RBM10	Amp_17q23.3	0.268	1
KDM6A	PARD3	0.269	1
RHOA	14q-Del	0.269	1
FBXW7	Del_13q14.2	0.27	1
CNOT1	4q-Del	0.271	1
FAM47C	4q-Del	0.271	1
KLF5	RAI1	0.271	1
KLF5	RBM10	0.271	1
MLL	TSC1	0.271	1
PIK3CA	Amp_20q11.21	0.271	1
RAI1	4q-Del	0.271	1
SPTAN1	Amp_6p22.3	0.271	1
TSC1	Amp_13q22.1	0.271	1
Amp_10p14	Del_11q25	0.271	1
FGFR3	3p-Amp	0.272	1
3q-Amp	Amp_4q13.3	0.272	1
ATM	CDKN1A	0.273	1
ATM	11q-Del	0.273	1
MLL3	Amp_12q15	0.273	1
NF1	10q-Del	0.273	1
NF1	Del_11p15.5	0.273	1
RB1	7q-Amp	0.273	1
TSC1	Amp_1q21.3	0.273	1
CREBBP	SF1	0.274	1
KIAA1267	15q-Del	0.274	1
NF2	Del_11q25	0.274	1
NFE2L2	PSIP1	0.274	1
SF1	Del_11q25	0.274	1
ZBTB7B	Amp_12q15	0.274	1
EP300	KLF5	0.275	1
FBXW7	TSC1	0.275	1
KLF5	11p-Del	0.275	1
PTEN	Amp_19q13.43	0.275	1
FGFR3	Amp_8p11.23	0.276	1
MLL	Amp_12q15	0.276	1
5p-Amp	Amp_12q15	0.276	1
5p-Amp	Del_6p25.3	0.276	1
Amp_6p22.3	Del_2q22.1	0.276	1
Amp_11q22.2	Del_17p12	0.276	1
Amp_13q22.1	Del_16q23.1	0.276	1
ATM	Del_6p25.3	0.277	1
CSMD3	Amp_22q12.2	0.277	1
FGFR3	ZFP36L1	0.277	1
MLL3	Del_4q22.1	0.277	1
STAG2	Amp_22q12.2	0.277	1
THRAP3	Amp_10p14	0.277	1
ZFP36L1	Amp_4p16.3	0.277	1
Amp_10p14	Del_1p36.11	0.277	1
Amp_12q15	Del_4q34.2	0.277	1
HLA-A	Del_5q12.1	0.278	1
NRAS	9q-Del	0.278	1
TP53	Del_11p15.5	0.278	1
UNC93B1	9q-Del	0.278	1
ZNF185	Del_9p23	0.278	1
ARID1A	10q-Del	0.279	1
EP300	9q-Del	0.279	1
MBD1	18q-Del	0.279	1
MLL	Del_12p13.1	0.279	1
MLL2	Del_11q23.3	0.279	1
MLL3	8q-Amp	0.279	1
NFE2L2	Del_8p23.3	0.279	1
PIK3CA	Amp_17q23.3	0.279	1
18q-Del	Del_1q32.1	0.279	1
ASXL2	Del_Xp11.3	0.28	1
CDKN1A	14q-Del	0.281	1
CUL1	Amp_6p22.3	0.281	1
HES1	Amp_8q22.3	0.281	1
IDH1	Del_2q34	0.281	1
MBD1	Amp_3p25.2	0.281	1
MLL3	Amp_22q12.2	0.281	1
PIK3CA	RB1	0.281	1
9q-Del	Amp_19q12	0.281	1
Amp_17q12	Del_2q34	0.281	1
CREBBP	PSIP1	0.282	1
ERBB3	4q-Del	0.282	1
NF1	11p-Del	0.282	1
7q-Amp	Del_11q25	0.282	1
Amp_11q13.3	Del_22q13.32	0.282	1
ELF3	NF2	0.283	1
NF2	Amp_17q23.3	0.283	1
NF2	Del_3p14.2	0.283	1
RHOA	RHOB	0.283	1
ZBTB7B	20p-Amp	0.283	1
ZBTB7B	Del_22q13.32	0.283	1
ERBB2	Del_16p13.3	0.284	1
FGFR3	Amp_19q12	0.284	1
FOXA1	Amp_5p15.33	0.284	1
HLA-A	Del_13q14.2	0.284	1
NRAS	Del_13q14.2	0.284	1
19q-Amp	Amp_16p13.2	0.284	1
1q-Amp	Amp_5p15.33	0.284	1
CTNNB1	8p-Del	0.285	1
DNAH6	FBXW7	0.285	1
FGFR3	5p-Amp	0.285	1
HRAS	Amp_1p34.2	0.285	1
MLL2	17q-Amp	0.285	1
PIK3CA	Amp_17q12	0.285	1
17p-Del	Amp_7p11.2	0.285	1
ARID1B	8q-Amp	0.286	1
ARID1B	Del_18q23	0.286	1
ASXL2	CDKN2A	0.286	1
ASXL2	RHOB	0.286	1
CTNNB1	TSC1	0.286	1
NFE2L2	18q-Del	0.286	1
TSC1	Del_1p36.11	0.286	1
8q-Amp	4q-Del	0.286	1
ERBB2	Del_6q27	0.287	1
ERBB2	Del_11q25	0.287	1
TSC1	20p-Amp	0.287	1
CNOT1	Del_12p13.1	0.288	1
CSMD3	SCARF2	0.288	1
FAM47C	Del_12p13.1	0.288	1
RBM10	Del_12p13.1	0.288	1
ATM	RHOB	0.289	1
CUL1	4p-Del	0.289	1
KLF5	15q-Del	0.289	1
PSIP1	7p-Amp	0.289	1
STAG2	Del_8p21.3	0.289	1
3p-Amp	4p-Del	0.289	1
7p-Amp	15q-Del	0.289	1
HLA-A	5p-Amp	0.29	1
KDM6A	Del_22q13.32	0.29	1
NF1	PKHD1	0.29	1
NRAS	5p-Amp	0.29	1
Del_9p23	Del_10q23.31	0.29	1
CDKN1A	KRAS	0.291	1
FBXW7	10q-Del	0.291	1
KRAS	11q-Del	0.291	1
KRAS	Del_19p13.3	0.291	1
MLL	10q-Del	0.291	1
10q-Del	Amp_12q15	0.291	1
10q-Del	Amp_13q22.1	0.291	1
6q-Del	Amp_1p34.2	0.291	1
9q-Del	Amp_3q26.33	0.291	1
Del_1q32.1	Del_8p23.3	0.291	1
EP300	19q-Amp	0.292	1
ERBB3	HES1	0.292	1
ERBB3	ZBTB7B	0.292	1
ERBB3	Amp_6q21	0.292	1
FAM47C	9q-Del	0.292	1
KDM6A	Amp_3q26.33	0.292	1
KRAS	9p-Del	0.292	1
MLL3	Amp_19q12	0.292	1
NFE2L2	Amp_4p16.3	0.292	1
PARD3	20p-Amp	0.292	1
PARD3	Del_22q13.32	0.292	1
RAI1	Del_5q12.1	0.292	1
RB1	Del_Xp11.3	0.292	1
RBM10	SPTAN1	0.292	1
RBM10	Amp_7p11.2	0.292	1
RXRA	Amp_4p16.3	0.292	1
ZBTB7B	Amp_1q21.3	0.292	1
19q-Amp	17p-Del	0.292	1
16p-Del	Amp_4p16.3	0.292	1
ARID1A	9p-Del	0.293	1
CUL1	Amp_11q13.3	0.293	1
METTL3	Amp_3q26.33	0.293	1
MLL2	Amp_16p13.2	0.293	1
RB1	STAG2	0.293	1
9p-Del	Amp_5p15.33	0.293	1
BCL2L1	KDM6A	0.294	1
CTNNB1	9q-Del	0.294	1
FAT1	RB1	0.294	1
KDM6A	Amp_1q23.3	0.294	1
RB1	Del_11q23.3	0.294	1
RHOA	Del_2q34	0.294	1
RUNX1	Del_9p21.3	0.294	1
THRAP3	Del_5q12.1	0.294	1
TP53	Del_Xp11.3	0.294	1
ARID1B	Del_8p21.3	0.295	1
ATM	8p-Del	0.295	1
KLF5	Del_8p21.3	0.295	1
MLL	20p-Amp	0.295	1
ATM	Amp_5p15.33	0.296	1
ATM	Amp_19q13.43	0.296	1
ASXL2	20q-Amp	0.297	1
CTNNB1	10q-Del	0.297	1
CTNNB1	Del_15q13.1	0.297	1
FOXA1	Del_15q13.1	0.297	1
FOXQ1	10q-Del	0.297	1
FOXQ1	Del_15q13.1	0.297	1
PKHD1	SPTAN1	0.297	1
PKHD1	Amp_7p11.2	0.297	1
PTEN	3q-Amp	0.297	1
PTEN	6q-Del	0.297	1
SPTAN1	Amp_16p13.2	0.297	1
4p-Del	Amp_1q21.3	0.297	1
ATM	Del_11q23.3	0.299	1
ERBB2	Del_9p21.3	0.299	1
MBD1	Del_4q22.1	0.299	1
Del_1q32.1	Del_4q22.1	0.299	1
CSMD3	10q-Del	0.3	1
CSMD3	Del_15q13.1	0.3	1
ERCC2	NFE2L2	0.3	1
ERCC2	Amp_11q22.2	0.3	1
FGFR3	3q-Amp	0.3	1
NF2	Amp_7p11.2	0.3	1
SF1	SPTAN1	0.3	1
STAG2	3q-Amp	0.3	1
ZFP36L1	Del_9p23	0.301	1
CDKN1A	RHOB	0.302	1
ERBB2	Amp_6p22.3	0.302	1
SPTAN1	8q-Amp	0.302	1
Amp_4q13.3	Del_18q23	0.302	1
ATM	CUL1	0.303	1
FAM47C	Del_13q14.2	0.303	1
FAT1	14q-Del	0.303	1
SHANK1	Del_9p21.3	0.303	1
C3orf70	KDM6A	0.304	1
CREBBP	9q-Del	0.304	1
CUL1	KDM6A	0.304	1
HLA-A	Amp_8q22.3	0.304	1
NUDT11	Amp_8q22.3	0.304	1
15q-Del	Amp_10p14	0.304	1
CNOT1	Amp_13q22.1	0.305	1
CSMD3	16p-Del	0.305	1
CSMD3	Amp_11q22.2	0.305	1
CSMD3	Del_6q27	0.305	1
CSMD3	Del_11q25	0.305	1
DNAH6	Amp_8p11.23	0.305	1
EP300	Del_12p13.1	0.305	1
FAM47C	RBM10	0.305	1
FAT1	RHOA	0.305	1
FGFR3	16p-Del	0.305	1
FGFR3	Amp_11q22.2	0.305	1
NFE2L2	Amp_8p11.23	0.305	1
NFE2L2	Del_16p13.3	0.305	1
PLCXD3	9p-Del	0.305	1
RBM10	Amp_12q15	0.305	1
STAG2	TXNIP	0.305	1
TSC1	Amp_11q13.3	0.305	1
TXNIP	Del_16p13.3	0.305	1
Amp_8p11.23	Del_11q25	0.305	1
CDKN1A	5p-Amp	0.306	1
CREBBP	Del_6q27	0.306	1
HES1	Amp_20q11.21	0.306	1
PARD3	15q-Del	0.306	1
5p-Amp	5q-Del	0.306	1
15q-Del	Del_12p13.1	0.306	1
Amp_7p21.1	Del_11q25	0.306	1
KLF5	Del_9p21.3	0.307	1
Amp_4q13.3	Del_9p23	0.307	1
ARID1A	11p-Del	0.308	1
ARID1B	Amp_4p16.3	0.308	1
CNNM4	Del_6p25.3	0.308	1
EP300	Amp_13q22.1	0.308	1
EP300	Del_6p25.3	0.308	1
MLL	NF2	0.308	1
NF2	Amp_12q15	0.308	1
PARD3	Amp_20q11.21	0.308	1
SF1	Amp_12q15	0.308	1
7p-Amp	Amp_4p16.3	0.308	1
ASXL2	GNA13	0.309	1
ASXL2	MBD1	0.309	1
ATM	SCARF2	0.309	1
CTNNB1	PKHD1	0.309	1
FBXW7	19q-Amp	0.309	1
FBXW7	17p-Del	0.309	1
GNA13	Amp_17q12	0.309	1
KLF5	18q-Del	0.309	1
MBD1	Amp_17q12	0.309	1
PKHD1	THRAP3	0.309	1
SCARF2	Del_4q34.2	0.309	1
THRAP3	Amp_16p13.2	0.309	1
17p-Del	Amp_1p34.2	0.309	1
4p-Del	Amp_6p22.3	0.309	1
Amp_7p11.2	Del_11q23.3	0.309	1
ERCC2	MLL2	0.31	1
HLA-A	8q-Amp	0.31	1
HLA-A	Del_18q23	0.31	1
UNC93B1	8q-Amp	0.31	1
UNC93B1	Del_18q23	0.31	1
Amp_4p16.3	Amp_7p21.1	0.31	1
HES1	Del_14q24.1	0.311	1
MLL2	Amp_8p11.21	0.311	1
PIK3CA	Del_13q14.2	0.311	1
ZBTB7B	18q-Del	0.311	1
ZBTB7B	Del_14q24.1	0.311	1
CTNNB1	5p-Amp	0.312	1
DNAH6	4p-Del	0.312	1
FOXA1	5p-Amp	0.312	1
GNA13	MLL3	0.312	1
HRAS	14q-Del	0.312	1
KIAA1267	RHOA	0.312	1
MLL	Del_2q34	0.312	1
MLL3	17q-Amp	0.312	1
NFE2L2	RHOA	0.312	1
NFE2L2	SHANK1	0.312	1
RHOA	22q-Del	0.312	1
RHOA	Amp_11q22.2	0.312	1
SHANK1	22q-Del	0.312	1
SHANK1	Amp_11q22.2	0.312	1
THRAP3	5p-Amp	0.312	1
TMCO4	Del_2q37.1	0.312	1
5p-Amp	Del_1p36.11	0.312	1
ATM	9q-Del	0.313	1
CREBBP	Amp_1q21.3	0.313	1
IDH1	Del_6q27	0.313	1
CNOT1	5p-Amp	0.314	1
EP300	9p-Del	0.314	1
ERBB3	Amp_13q22.1	0.314	1
HRAS	Amp_1q21.3	0.314	1
KDM6A	Del_2q37.1	0.314	1
KIAA1267	MLL3	0.314	1
NFE2L2	Del_2q37.1	0.314	1
RAI1	5p-Amp	0.314	1
TSC1	14q-Del	0.314	1
TSC1	4p-Del	0.314	1
Amp_11q22.2	Del_2q37.1	0.314	1
Amp_17q12	Del_2q22.1	0.314	1
BCL2L1	TP53	0.315	1
CDKN1A	ERCC2	0.315	1
PKHD1	Amp_5p15.33	0.315	1
RXRA	Del_4q22.1	0.315	1
Amp_11q22.2	Del_4q22.1	0.315	1
ATM	ZFP36L1	0.316	1
CSMD3	Amp_3q26.33	0.316	1
RBM10	Amp_8q22.3	0.316	1
RHOA	Del_2q22.1	0.316	1
SHANK1	Del_2q22.1	0.316	1
ZFP36L1	Del_4q34.2	0.316	1
Amp_10p14	Del_9p23	0.316	1
CNNM4	20p-Amp	0.317	1
NF2	20p-Amp	0.317	1
PARD3	8q-Amp	0.317	1
PIK3CA	SF1	0.317	1
SF1	20p-Amp	0.317	1
TSC1	8p-Del	0.317	1
C3orf70	ZFP36L1	0.318	1
C3orf70	Amp_22q12.2	0.318	1
CDKN2A	Amp_19q13.43	0.318	1
CUL1	Amp_22q12.2	0.318	1
FAM47C	Del_22q13.32	0.318	1
RB1	Amp_8p11.21	0.318	1
STAG2	Del_11p15.5	0.318	1
THRAP3	Amp_8q22.3	0.318	1
ZFP36L1	3p-Amp	0.318	1
SPTAN1	7q-Amp	0.319	1
5p-Amp	17p-Del	0.319	1
CDKN1A	FAT1	0.32	1
CDKN1A	17q-Amp	0.32	1
CDKN1A	20q-Amp	0.32	1
CDKN1A	Amp_1q23.3	0.32	1
FAT1	Del_19p13.3	0.32	1
FBXW7	KDM6A	0.32	1
TMCO4	Del_19p13.3	0.32	1
Del_19p13.3	Del_Xq21.33	0.32	1
ELF3	IDH1	0.321	1
4p-Del	Amp_20q11.21	0.321	1
NF1	Del_1p36.11	0.322	1
PLCXD3	Amp_10p14	0.322	1
CNOT1	7q-Amp	0.323	1
FAT1	Amp_1q23.3	0.323	1
IDH1	Del_17p12	0.323	1
RAI1	15q-Del	0.323	1
Amp_1p34.2	Del_18q23	0.323	1
PIK3CA	Amp_22q12.2	0.324	1
ZFP36L1	Del_19p13.3	0.324	1
ASXL2	8q-Amp	0.325	1
KRAS	6q-Del	0.325	1
KRAS	Del_15q13.1	0.325	1
RUNX1	6q-Del	0.325	1
Del_15q13.1	Del_Xp11.3	0.325	1
CDKN2A	Del_8p21.3	0.326	1
DNAH6	RHOB	0.326	1
DNAH6	Amp_3q26.33	0.326	1
ELF3	Del_6q27	0.326	1
HRAS	RHOB	0.326	1
HRAS	Amp_3q26.33	0.326	1
KRAS	8p-Del	0.326	1
PKHD1	Amp_8p11.23	0.326	1
RBM10	Amp_1q21.3	0.326	1
STAG2	Amp_16p13.2	0.326	1
Amp_12q15	Del_18q23	0.326	1
Amp_17q23.3	Del_6q27	0.326	1
CUL1	Del_11p15.5	0.327	1
ERBB3	NF2	0.327	1
ERBB3	SF1	0.327	1
FBXW7	NF1	0.327	1
ELF3	Del_16p13.3	0.328	1
KLF5	RHOA	0.328	1
SHANK1	4q-Del	0.328	1
Amp_7p11.2	Del_2q22.1	0.328	1
EP300	Amp_1q23.3	0.329	1
CTNNB1	EP300	0.33	1
CTNNB1	11p-Del	0.33	1
EP300	THRAP3	0.33	1
FOXQ1	11p-Del	0.33	1
FOXQ1	17p-Del	0.33	1
PIK3CA	Amp_8p11.21	0.33	1
THRAP3	11p-Del	0.33	1
1q-Amp	17p-Del	0.33	1
5p-Amp	Amp_10p14	0.33	1
10q-Del	Amp_11q13.3	0.33	1
ASXL2	22q-Del	0.331	1
ASXL2	Amp_19q12	0.331	1
FAT1	Del_16q23.1	0.331	1
HES1	Del_4q22.1	0.331	1
KIAA1267	Amp_3q26.33	0.331	1
NFE2L2	Amp_11q13.3	0.331	1
NFE2L2	Amp_17q12	0.331	1
ZBTB7B	Del_4q22.1	0.331	1
3q-Amp	14q-Del	0.331	1
3q-Amp	4p-Del	0.331	1
22q-Del	Amp_11q13.3	0.331	1
Amp_19q13.43	Del_1q32.1	0.331	1
EP300	Amp_8q22.3	0.332	1
ERBB3	RAI1	0.332	1
FAT1	19p-Del	0.332	1
PSIP1	Amp_12q15	0.332	1
PSIP1	Del_6p25.3	0.332	1
C3orf70	16p-Del	0.334	1
C3orf70	22q-Del	0.334	1
CUL1	RXRA	0.334	1
KIAA1267	3p-Amp	0.334	1
METTL3	NFE2L2	0.334	1
METTL3	Amp_11q22.2	0.334	1
PLCXD3	9q-Del	0.334	1
ZBTB7B	Del_8p21.3	0.334	1
11q-Del	Del_4q22.1	0.334	1
CSMD3	KLF5	0.335	1
CTNNB1	Amp_1p34.2	0.335	1
FBXW7	FOXA1	0.335	1
FOXA1	Amp_1p34.2	0.335	1
FOXQ1	Amp_1p34.2	0.335	1
KLF5	Amp_8p11.23	0.335	1
STAG2	7p-Amp	0.335	1
7p-Amp	Del_16p13.3	0.335	1
GNA13	9p-Del	0.336	1
MBD1	9p-Del	0.336	1
NF1	Amp_12q15	0.336	1
NF1	Amp_13q22.1	0.336	1
RAI1	TP53	0.336	1
RAI1	Amp_6p22.3	0.336	1
RB1	17q-Amp	0.336	1
RB1	Del_Xq21.33	0.336	1
19q-Amp	4p-Del	0.336	1
4p-Del	Amp_1q23.3	0.336	1
EP300	RAI1	0.337	1
FAT1	3p-Amp	0.337	1
FGFR3	UNC93B1	0.337	1
FGFR3	Del_8p23.3	0.337	1
HES1	Del_11p15.5	0.337	1
HLA-A	Amp_8p11.23	0.337	1
HLA-A	Del_16p13.3	0.337	1
KRAS	PKHD1	0.337	1
METTL3	20q-Amp	0.337	1
NRAS	STAG2	0.337	1
NRAS	Amp_8p11.23	0.337	1
PIK3CA	5p-Amp	0.337	1
SHANK1	Del_17p12	0.337	1
STAG2	UNC93B1	0.337	1
UNC93B1	Amp_8p11.23	0.337	1
Amp_7p11.2	Del_14q24.1	0.337	1
ERCC2	Amp_10p14	0.338	1
ZNF185	Del_11p15.5	0.338	1
ARID1B	Del_4q22.1	0.339	1
KLF5	Del_4q22.1	0.339	1
TP53	Del_11q23.3	0.339	1
7q-Amp	Del_9p21.3	0.339	1
ERCC2	FGFR3	0.34	1
FOXA1	Del_18q23	0.34	1
FOXQ1	8q-Amp	0.34	1
PIK3CA	Amp_3p25.2	0.34	1
PTEN	Del_18q23	0.34	1
RHOA	Del_6q27	0.34	1
SCARF2	Amp_8p11.21	0.34	1
SCARF2	Del_2q22.1	0.34	1
THRAP3	8q-Amp	0.34	1
1q-Amp	Del_18q23	0.34	1
19p-Del	Amp_8p11.21	0.34	1
ARID1A	RHOB	0.341	1
FGFR3	RPTN	0.341	1
HRAS	Amp_22q12.2	0.341	1
PLCXD3	Del_13q14.2	0.341	1
PSIP1	7q-Amp	0.342	1
ZBTB7B	Amp_17q12	0.342	1
7q-Amp	15q-Del	0.342	1
Amp_5p15.33	Amp_12q15	0.342	1
TMCO4	TSC1	0.343	1
TSC1	Del_1q32.1	0.343	1
Amp_17q23.3	Del_4q22.1	0.343	1
FBXW7	Amp_7p11.2	0.344	1
KLF5	Amp_1q23.3	0.344	1
KRAS	Del_13q14.2	0.344	1
MLL3	Del_3p14.2	0.344	1
SPTAN1	Amp_10p14	0.344	1
STAG2	8q-Amp	0.344	1
ATM	10q-Del	0.345	1
NF2	Amp_1q21.3	0.345	1
RHOA	Del_12p13.1	0.345	1
CDKN2A	9q-Del	0.346	1
CUL1	Amp_8q22.3	0.346	1
NF2	Del_14q24.1	0.346	1
IDH1	Del_6p25.3	0.347	1
KDM6A	Del_13q14.2	0.347	1
KIAA1267	11q-Del	0.347	1
RB1	RHOA	0.347	1
RB1	SHANK1	0.347	1
RHOA	9p-Del	0.347	1
11q-Del	Amp_11q22.2	0.347	1
ASXL2	Amp_7p21.1	0.348	1
ASXL2	Del_6q27	0.348	1
ERBB2	Amp_7p11.2	0.348	1
19p-Del	Amp_19q12	0.348	1
Amp_4p16.3	Amp_7p11.2	0.348	1
Amp_10p14	Del_11q23.3	0.348	1
ASXL2	RB1	0.349	1
FAM47C	Del_18q23	0.349	1
KRAS	NF1	0.349	1
PKHD1	14q-Del	0.349	1
RAI1	8q-Amp	0.349	1
5p-Amp	15q-Del	0.349	1
C3orf70	7p-Amp	0.35	1
CDKN2A	RPTN	0.35	1
CDKN2A	Amp_4q13.3	0.35	1
CUL1	KLF5	0.35	1
CUL1	7p-Amp	0.35	1
KIAA1267	RB1	0.35	1
KLF5	MLL3	0.35	1
KLF5	3p-Amp	0.35	1
METTL3	7p-Amp	0.35	1
MLL	Amp_8p11.21	0.35	1
RHOB	19q-Amp	0.35	1
RHOB	Amp_4q13.3	0.35	1
RHOB	Del_7q36.3	0.35	1
RXRA	9p-Del	0.35	1
HLA-A	Amp_3q26.33	0.351	1
HLA-A	Amp_11q13.3	0.351	1
HLA-A	Del_10q23.31	0.351	1
NRAS	Amp_11q13.3	0.351	1
NRAS	Del_10q23.31	0.351	1
NUDT11	Amp_3q26.33	0.351	1
NUDT11	Amp_11q13.3	0.351	1
RB1	Del_17p12	0.351	1
UNC93B1	Amp_3q26.33	0.351	1
ATM	5p-Amp	0.352	1
CDKN2A	Del_15q13.1	0.352	1
HES1	11q-Del	0.352	1
HES1	5q-Del	0.352	1
HES1	Del_19p13.3	0.352	1
PARD3	Del_11p15.5	0.352	1
RHOA	Amp_17q23.3	0.352	1
RHOA	Del_3p14.2	0.352	1
ZBTB7B	11q-Del	0.352	1
ZBTB7B	Del_19p13.3	0.352	1
11q-Del	Amp_6q21	0.352	1
CDKN1A	Amp_17q12	0.353	1
FAT1	Del_22q13.32	0.353	1
FGFR3	NF1	0.353	1
NF1	Del_22q13.32	0.353	1
CDKN1A	ERBB2	0.354	1
ERCC2	8p-Del	0.354	1
MBD1	3q-Amp	0.354	1
MBD1	Del_15q13.1	0.354	1
17q-Amp	3q-Amp	0.354	1
17q-Amp	10q-Del	0.354	1
5q-Del	Amp_19q12	0.354	1
6q-Del	Del_1q32.1	0.354	1
ASXL2	4q-Del	0.355	1
HES1	Del_8p23.3	0.355	1
PKHD1	Amp_11q13.3	0.356	1
PKHD1	Del_10q23.31	0.356	1
C3orf70	Del_2q37.1	0.357	1
CDKN2A	Amp_20q11.21	0.357	1
DNAH6	NFE2L2	0.357	1
DNAH6	Amp_11q22.2	0.357	1
HRAS	NFE2L2	0.357	1
HRAS	22q-Del	0.357	1
HRAS	Amp_11q22.2	0.357	1
METTL3	MLL3	0.357	1
PTEN	Del_9p23	0.357	1
THRAP3	Del_9p23	0.357	1
TSC1	Amp_22q12.2	0.357	1
TXNIP	22q-Del	0.357	1
TXNIP	Amp_11q22.2	0.357	1
Amp_11q13.3	Del_10q23.31	0.357	1
EP300	ERBB3	0.358	1
ERBB3	11p-Del	0.358	1
HLA-A	MLL2	0.358	1
METTL3	Amp_5p15.33	0.358	1
3p-Amp	Amp_5p15.33	0.358	1
ATM	NUDT11	0.359	1
CDKN2A	Amp_19q12	0.359	1
CDKN2A	Del_8p23.3	0.359	1
DNAH6	Del_2q34	0.359	1
ERBB2	RHOB	0.359	1
HLA-A	Del_4q34.2	0.359	1
NRAS	Del_4q34.2	0.359	1
NUDT11	Del_4q34.2	0.359	1
PIK3CA	Amp_19q12	0.359	1
RHOB	Amp_19q12	0.359	1
CNNM4	Amp_20q11.21	0.36	1
METTL3	Amp_19q12	0.36	1
PLCXD3	11p-Del	0.36	1
RHOA	Del_8p21.3	0.36	1
11p-Del	Amp_6p22.3	0.36	1
Amp_1p34.2	Del_6p25.3	0.36	1
Amp_8p11.21	Del_2q34	0.36	1
ARID1B	Amp_11q13.3	0.361	1
ARID1B	Del_10q23.31	0.361	1
HRAS	Amp_3p25.2	0.361	1
KDM6A	22q-Del	0.361	1
KLF5	Del_10q23.31	0.361	1
KRAS	Del_17p12	0.361	1
7q-Amp	Amp_4p16.3	0.361	1
15q-Del	Amp_4p16.3	0.361	1
9p-Del	Amp_8q22.3	0.361	1
Amp_19q13.43	Del_2q22.1	0.361	1
CTNNB1	14q-Del	0.362	1
CTNNB1	4p-Del	0.362	1
FBXW7	KRAS	0.362	1
FOXA1	14q-Del	0.362	1
FOXA1	4p-Del	0.362	1
MLL2	Del_12p13.1	0.362	1
PTEN	4p-Del	0.362	1
TMCO4	Amp_10p14	0.362	1
1q-Amp	14q-Del	0.362	1
ATM	Del_11q25	0.363	1
IDH1	Del_9p23	0.363	1
NFE2L2	Amp_19q13.43	0.363	1
RBM10	SHANK1	0.363	1
22q-Del	Amp_19q13.43	0.363	1
4p-Del	Amp_17q23.3	0.363	1
HLA-A	Del_8p23.3	0.364	1
17p-Del	Amp_19q13.43	0.364	1
ATM	RB1	0.365	1
ATM	9p-Del	0.365	1
ELF3	SCARF2	0.365	1
PIK3CA	Del_11p15.5	0.365	1
RPTN	ZFP36L1	0.365	1
SCARF2	Amp_17q23.3	0.365	1
SCARF2	Del_3p14.2	0.365	1
CDKN1A	Del_17p12	0.366	1
PARD3	STAG2	0.366	1
Amp_8p11.21	Del_9p21.3	0.366	1
C3orf70	Del_12p13.1	0.367	1
CNNM4	Del_4q22.1	0.367	1
CUL1	PARD3	0.367	1
CUL1	Del_12p13.1	0.367	1
MLL2	Del_2q34	0.367	1
PARD3	3p-Amp	0.367	1
PIK3CA	Amp_12q15	0.367	1
PIK3CA	Amp_13q22.1	0.367	1
PKHD1	TMCO4	0.367	1
PKHD1	17q-Amp	0.367	1
CREBBP	SPTAN1	0.368	1
SCARF2	TP53	0.368	1
SPTAN1	Del_11q25	0.368	1
Amp_7p11.2	Del_6q27	0.368	1
CDKN2A	PKHD1	0.37	1
CDKN2A	Amp_16p13.2	0.37	1
DNAH6	Del_11p15.5	0.37	1
PKHD1	RHOB	0.37	1
RB1	Del_6q27	0.37	1
RHOB	Amp_16p13.2	0.37	1
ZFP36L1	Amp_1q21.3	0.37	1
Amp_8q22.3	Del_11q23.3	0.37	1
ARID1A	SCARF2	0.371	1
ARID1B	11q-Del	0.371	1
ARID1B	Del_19p13.3	0.371	1
TXNIP	20q-Amp	0.371	1
7p-Amp	11q-Del	0.371	1
10q-Del	Amp_3p25.2	0.371	1
8p-Del	Del_1q32.1	0.371	1
8p-Del	Del_Xq21.33	0.371	1
CDKN1A	Amp_7p21.1	0.372	1
CREBBP	METTL3	0.372	1
CREBBP	3p-Amp	0.372	1
EP300	7q-Amp	0.372	1
EP300	Del_Xp11.3	0.372	1
KRAS	11p-Del	0.372	1
KRAS	17p-Del	0.372	1
METTL3	Amp_7p21.1	0.372	1
ZNF185	9p-Del	0.372	1
3p-Amp	Del_6q27	0.372	1
Amp_11q22.2	Del_2q34	0.372	1
DNAH6	7p-Amp	0.373	1
DNAH6	4q-Del	0.373	1
HRAS	KLF5	0.373	1
5p-Amp	9q-Del	0.373	1
ATM	19q-Amp	0.374	1
CDKN2A	CREBBP	0.374	1
CDKN2A	Amp_7p21.1	0.374	1
FOXQ1	PIK3CA	0.374	1
HLA-A	Del_2q34	0.374	1
NRAS	Del_2q34	0.374	1
PIK3CA	PTEN	0.374	1
PIK3CA	Del_1p36.11	0.374	1
SPTAN1	Del_8p23.3	0.374	1
Amp_4p16.3	Del_13q14.2	0.374	1
ATM	4q-Del	0.375	1
ERCC2	Amp_3q26.33	0.375	1
ERCC2	Del_10q23.31	0.375	1
TSC1	ZBTB7B	0.375	1
ZFP36L1	3q-Amp	0.375	1
ZFP36L1	10q-Del	0.375	1
CDKN2A	1q-Amp	0.376	1
CTNNB1	RHOB	0.376	1
NUDT11	Amp_1q23.3	0.376	1
RHOB	Del_1p36.11	0.376	1
11p-Del	Amp_10p14	0.376	1
17p-Del	Amp_10p14	0.376	1
CREBBP	17p-Del	0.377	1
FBXW7	20p-Amp	0.377	1
NF2	Amp_17q12	0.377	1
SF1	Amp_17q12	0.377	1
11p-Del	Amp_7p21.1	0.377	1
ERBB2	Amp_19q13.43	0.378	1
ERCC2	Amp_13q22.1	0.378	1
GNA13	Del_9p21.3	0.378	1
RHOA	Amp_7p11.2	0.378	1
ATM	Del_10q23.31	0.379	1
FGFR3	Amp_20q11.21	0.379	1
NF1	17q-Amp	0.379	1
RB1	11q-Del	0.379	1
RPTN	Amp_20q11.21	0.379	1
9p-Del	Del_13q14.2	0.379	1
9q-Del	Amp_22q12.2	0.379	1
PARD3	Amp_17q12	0.38	1
TSC1	22q-Del	0.38	1
TSC1	Amp_11q22.2	0.38	1
CSMD3	PTEN	0.381	1
CSMD3	1q-Amp	0.381	1
CTNNB1	Del_16p13.3	0.381	1
FOXA1	Del_8p21.3	0.381	1
FOXA1	Del_16p13.3	0.381	1
GNA13	9q-Del	0.381	1
KIAA1267	RPTN	0.381	1
KIAA1267	Amp_4q13.3	0.381	1
MBD1	9q-Del	0.381	1
NFE2L2	Amp_4q13.3	0.381	1
PTEN	Del_8p21.3	0.381	1
RBM10	Amp_3p25.2	0.381	1
RPTN	RXRA	0.381	1
RXRA	Del_7q36.3	0.381	1
SHANK1	15q-Del	0.381	1
THRAP3	Del_8p21.3	0.381	1
THRAP3	Del_16p13.3	0.381	1
TP53	18q-Del	0.381	1
1q-Amp	Del_8p21.3	0.381	1
7p-Amp	Del_9p23	0.381	1
Amp_4q13.3	Amp_11q22.2	0.381	1
FAT1	HLA-A	0.382	1
FBXW7	STAG2	0.382	1
FBXW7	Amp_8p11.23	0.382	1
KRAS	Del_18q23	0.382	1
NRAS	Del_11q23.3	0.382	1
NUDT11	20q-Amp	0.382	1
RUNX1	Del_18q23	0.382	1
SCARF2	SPTAN1	0.382	1
SPTAN1	19p-Del	0.382	1
UNC93B1	20q-Amp	0.382	1
19p-Del	Amp_7p11.2	0.382	1
DNAH6	Del_2q22.1	0.383	1
HRAS	Del_2q22.1	0.383	1
MLL3	18q-Del	0.383	1
PKHD1	Del_14q24.1	0.383	1
TXNIP	Del_2q22.1	0.383	1
5p-Amp	Amp_1q23.3	0.383	1
8q-Amp	14q-Del	0.383	1
CUL1	RBM10	0.384	1
FAM47C	3p-Amp	0.384	1
NF2	Amp_3p25.2	0.384	1
C3orf70	Amp_17q23.3	0.385	1
IDH1	18q-Del	0.385	1
IDH1	Del_14q24.1	0.385	1
PSIP1	Del_18q23	0.385	1
8q-Amp	15q-Del	0.385	1
ATM	Del_3p14.2	0.386	1
CUL1	Del_17p12	0.386	1
FAT1	9q-Del	0.386	1
HES1	RB1	0.386	1
KLF5	RB1	0.386	1
RB1	ZBTB7B	0.386	1
ZBTB7B	9p-Del	0.386	1
7p-Amp	9p-Del	0.386	1
9p-Del	Amp_6q21	0.386	1
Amp_6p22.3	Del_18q23	0.386	1
FAT1	16p-Del	0.387	1
FAT1	Del_2q37.1	0.387	1
HES1	10q-Del	0.387	1
KIAA1267	20q-Amp	0.387	1
NFE2L2	20q-Amp	0.387	1
ZBTB7B	3q-Amp	0.387	1
ZBTB7B	10q-Del	0.387	1
ZBTB7B	Del_15q13.1	0.387	1
11q-Del	Amp_6p22.3	0.387	1
4p-Del	Amp_1p34.2	0.387	1
Del_2q34	Del_9p21.3	0.387	1
CDKN1A	CNNM4	0.388	1
MLL2	Amp_3q26.33	0.388	1
NF2	11q-Del	0.388	1
NF2	Del_19p13.3	0.388	1
SF1	11q-Del	0.388	1
Amp_10p14	Amp_11q22.2	0.388	1
ELF3	Amp_7p11.2	0.389	1
Amp_12q15	Del_17p12	0.389	1
CDKN1A	Del_3p14.2	0.39	1
CREBBP	Del_16q23.1	0.39	1
DNAH6	Del_12p13.1	0.39	1
HLA-A	Amp_8p11.21	0.39	1
HRAS	PARD3	0.39	1
KDM6A	Amp_7p21.1	0.39	1
KRAS	14q-Del	0.39	1
KRAS	4p-Del	0.39	1
RHOA	8p-Del	0.39	1
RUNX1	14q-Del	0.39	1
4q-Del	Amp_8q22.3	0.39	1
Del_11q25	Del_16q23.1	0.39	1
FOXQ1	ZFP36L1	0.391	1
FOXQ1	Amp_22q12.2	0.391	1
MLL	SCARF2	0.391	1
MLL	19p-Del	0.391	1
PKHD1	9q-Del	0.391	1
PTEN	ZFP36L1	0.391	1
RAI1	Del_4q22.1	0.391	1
SCARF2	Amp_13q22.1	0.391	1
THRAP3	ZFP36L1	0.391	1
ZFP36L1	Del_1p36.11	0.391	1
5p-Amp	6q-Del	0.391	1
19p-Del	Amp_12q15	0.391	1
19p-Del	Del_6p25.3	0.391	1
9q-Del	Amp_16p13.2	0.391	1
ARID1A	Amp_3q26.33	0.392	1
ASXL2	STAG2	0.392	1
ASXL2	Del_16p13.3	0.392	1
CNNM4	Del_11p15.5	0.392	1
CNOT1	Del_11p15.5	0.392	1
FBXW7	GNA13	0.392	1
FBXW7	17q-Amp	0.392	1
FBXW7	Del_1q32.1	0.392	1
MLL	RHOA	0.392	1
RHOA	Amp_13q22.1	0.392	1
RHOA	Del_6p25.3	0.392	1
TMCO4	TP53	0.392	1
TP53	17q-Amp	0.392	1
TP53	Del_Xq21.33	0.392	1
Amp_1p34.2	Del_1q32.1	0.392	1
Amp_8p11.23	Amp_17q12	0.392	1
Amp_17q12	Del_16p13.3	0.392	1
ATM	11p-Del	0.393	1
EP300	TSC1	0.393	1
KDM6A	Amp_12q15	0.393	1
CNOT1	Del_8p21.3	0.394	1
FAM47C	Del_8p21.3	0.394	1
FGFR3	PLCXD3	0.394	1
PLCXD3	STAG2	0.394	1
RAI1	Del_8p21.3	0.394	1
10q-Del	Del_9p23	0.394	1
CDKN1A	Amp_19q13.43	0.395	1
CDKN2A	Amp_3p25.2	0.395	1
ERBB3	FBXW7	0.395	1
FAT1	6q-Del	0.395	1
FAT1	Del_15q13.1	0.395	1
RHOA	Del_9p23	0.395	1
SHANK1	Del_9p23	0.395	1
TXNIP	Amp_19q12	0.395	1
ZFP36L1	Amp_20q11.21	0.395	1
Amp_1p34.2	Del_9p21.3	0.395	1
ZNF185	8p-Del	0.396	1
Amp_5p15.33	Del_1q32.1	0.396	1
ARID1B	RPTN	0.397	1
ARID1B	19q-Amp	0.397	1
ARID1B	Del_7q36.3	0.397	1
ELF3	Amp_8q22.3	0.397	1
KLF5	RPTN	0.397	1
KLF5	19q-Amp	0.397	1
RB1	Amp_17q23.3	0.397	1
19q-Amp	4q-Del	0.397	1
7p-Amp	Amp_4q13.3	0.397	1
4q-Del	Amp_4q13.3	0.397	1
CREBBP	Del_17p12	0.398	1
ERBB2	NRAS	0.398	1
ERBB2	NUDT11	0.398	1
ERCC2	20p-Amp	0.398	1
KIAA1267	Del_15q13.1	0.398	1
NFE2L2	Del_15q13.1	0.398	1
3q-Amp	22q-Del	0.398	1
6q-Del	Amp_11q22.2	0.398	1
CSMD3	MLL	0.399	1
CSMD3	Amp_12q15	0.399	1
CSMD3	Del_16q23.1	0.399	1
FGFR3	Del_16q23.1	0.399	1
GNA13	5p-Amp	0.399	1
MLL	Del_16p13.3	0.399	1
NF2	Amp_19q13.43	0.399	1
ZBTB7B	Amp_16p13.2	0.399	1
CSMD3	RBM10	0.4	1
FAM47C	STAG2	0.4	1
FGFR3	RBM10	0.4	1
MLL3	Amp_7p11.2	0.4	1
SCARF2	Del_22q13.32	0.4	1
Amp_7p11.2	Del_2q37.1	0.4	1
EP300	RHOB	0.401	1
HRAS	Del_2q37.1	0.401	1
KIAA1267	8p-Del	0.401	1
NFE2L2	8p-Del	0.401	1
SHANK1	Amp_4p16.3	0.401	1
ASXL2	Amp_8q22.3	0.402	1
CTNNB1	Amp_3q26.33	0.402	1
FOXA1	Amp_3q26.33	0.402	1
FOXA1	Amp_11q13.3	0.402	1
KIAA1267	Amp_8p11.21	0.402	1
PTEN	Amp_3q26.33	0.402	1
PTEN	Amp_11q13.3	0.402	1
RHOA	9q-Del	0.402	1
RHOA	Del_5q12.1	0.402	1
RXRA	Amp_8p11.21	0.402	1
THRAP3	Amp_3q26.33	0.402	1
ZNF185	9q-Del	0.402	1
ZNF185	Del_5q12.1	0.402	1
Amp_11q13.3	Del_1p36.11	0.402	1
Amp_11q22.2	Del_2q22.1	0.402	1
ARID1B	Del_2q34	0.403	1
C3orf70	7q-Amp	0.403	1
CUL1	7q-Amp	0.403	1
ERBB3	Del_9p21.3	0.403	1
METTL3	7q-Amp	0.403	1
PSIP1	3p-Amp	0.403	1
Amp_11q22.2	Del_9p21.3	0.403	1
Amp_19q12	Del_11q23.3	0.403	1
RHOB	Del_Xp11.3	0.404	1
TSC1	Amp_19q12	0.404	1
CNOT1	Del_17p12	0.405	1
CSMD3	20q-Amp	0.405	1
FOXA1	Del_8p23.3	0.405	1
KLF5	TSC1	0.405	1
PKHD1	Del_2q34	0.405	1
TSC1	7p-Amp	0.405	1
ASXL2	FAM47C	0.406	1
CNOT1	Amp_17q12	0.406	1
CREBBP	HLA-A	0.406	1
FAM47C	Amp_17q12	0.406	1
HLA-A	Del_6q27	0.406	1
HLA-A	Del_11q25	0.406	1
IDH1	Del_4q22.1	0.406	1
NRAS	Amp_7p21.1	0.406	1
NRAS	Del_6q27	0.406	1
NRAS	Del_11q25	0.406	1
NUDT11	Amp_7p21.1	0.406	1
NUDT11	Del_6q27	0.406	1
PKHD1	Del_13q14.2	0.406	1
RBM10	Amp_17q12	0.406	1
UNC93B1	Amp_7p21.1	0.406	1
UNC93B1	Del_6q27	0.406	1
9q-Del	Amp_13q22.1	0.406	1
ATM	Del_12p13.1	0.407	1
CNOT1	HRAS	0.407	1
CTNNB1	KIAA1267	0.407	1
CTNNB1	NFE2L2	0.407	1
CTNNB1	22q-Del	0.407	1
DNAH6	RBM10	0.407	1
FAM47C	HRAS	0.407	1
FGFR3	Del_8p21.3	0.407	1
FOXA1	RXRA	0.407	1
FOXA1	Amp_11q22.2	0.407	1
FOXQ1	16p-Del	0.407	1
FOXQ1	22q-Del	0.407	1
HRAS	RBM10	0.407	1
HRAS	Amp_7p21.1	0.407	1
HRAS	Del_11q25	0.407	1
KIAA1267	Del_1p36.11	0.407	1
NF1	18q-Del	0.407	1
NFE2L2	THRAP3	0.407	1
RXRA	1q-Amp	0.407	1
RXRA	Del_1p36.11	0.407	1
THRAP3	16p-Del	0.407	1
THRAP3	Amp_11q22.2	0.407	1
CDKN2A	Del_11p15.5	0.408	1
DNAH6	Amp_8q22.3	0.408	1
FAT1	Del_7q36.3	0.408	1
PLCXD3	Amp_11q13.3	0.408	1
RPTN	20q-Amp	0.408	1
RPTN	Del_11q23.3	0.408	1
Amp_4q13.3	Del_11q23.3	0.408	1
CDKN2A	Amp_1p34.2	0.409	1
PIK3CA	Del_5q12.1	0.409	1
TSC1	8q-Amp	0.409	1
ERBB3	19p-Del	0.41	1
ARID1A	HRAS	0.411	1
ARID1A	TXNIP	0.411	1
CNNM4	TSC1	0.411	1
ELF3	Del_6p25.3	0.411	1
FOXA1	Amp_1q21.3	0.411	1
MLL	Del_3p14.2	0.411	1
PTEN	Amp_1q21.3	0.411	1
TXNIP	Amp_5p15.33	0.411	1
HES1	NF1	0.412	1
KDM6A	NUDT11	0.412	1
NF1	Amp_6q21	0.412	1
14q-Del	Amp_12q15	0.412	1
14q-Del	Del_16q23.1	0.412	1
4p-Del	Amp_12q15	0.412	1
ATM	FOXQ1	0.413	1
ATM	Del_1p36.11	0.413	1
CREBBP	20p-Amp	0.413	1
KDM6A	Amp_4q13.3	0.413	1
KDM6A	Del_7q36.3	0.413	1
20p-Amp	Del_11q25	0.413	1
8p-Del	Amp_17q12	0.413	1
ELF3	NUDT11	0.414	1
ELF3	UNC93B1	0.414	1
HLA-A	Del_3p14.2	0.414	1
KIAA1267	Del_5q12.1	0.414	1
MLL3	Del_18q23	0.414	1
NUDT11	Amp_17q23.3	0.414	1
NUDT11	Del_3p14.2	0.414	1
PARD3	RPTN	0.414	1
UNC93B1	Del_3p14.2	0.414	1
ZNF185	5p-Amp	0.414	1
19q-Amp	Del_12p13.1	0.414	1
Amp_11q22.2	Del_5q12.1	0.414	1
18q-Del	Amp_8q22.3	0.415	1
KIAA1267	PKHD1	0.416	1
KIAA1267	Amp_16p13.2	0.416	1
MLL3	SF1	0.416	1
NFE2L2	PKHD1	0.416	1
PIK3CA	RHOA	0.416	1
PKHD1	16p-Del	0.416	1
PKHD1	22q-Del	0.416	1
RXRA	Amp_16p13.2	0.416	1
TSC1	11q-Del	0.416	1
ERBB2	RXRA	0.417	1
ERBB2	16p-Del	0.417	1
ERBB2	22q-Del	0.417	1
KDM6A	Amp_6p22.3	0.417	1
18q-Del	Amp_4p16.3	0.417	1
ASXL2	Del_15q13.1	0.418	1
ELF3	Amp_22q12.2	0.418	1
EP300	GNA13	0.418	1
FAT1	4q-Del	0.418	1
PSIP1	Del_4q22.1	0.418	1
5p-Amp	Amp_1q21.3	0.418	1
10q-Del	Amp_17q12	0.418	1
CDKN1A	CSMD3	0.419	1
CDKN1A	STAG2	0.419	1
ERBB3	ERCC2	0.419	1
ERBB3	RHOA	0.419	1
KRAS	Amp_22q12.2	0.419	1
MLL2	Amp_17q23.3	0.419	1
MLL2	Del_3p14.2	0.419	1
RUNX1	ZFP36L1	0.419	1
TP53	15q-Del	0.419	1
ZFP36L1	Del_Xp11.3	0.419	1
17q-Amp	4p-Del	0.419	1
4p-Del	Del_1q32.1	0.419	1
CTNNB1	Del_9p21.3	0.42	1
DNAH6	ELF3	0.42	1
DNAH6	Del_3p14.2	0.42	1
ELF3	HRAS	0.42	1
HRAS	Amp_17q23.3	0.42	1
MLL2	SF1	0.42	1
PTEN	Del_9p21.3	0.42	1
THRAP3	Amp_6p22.3	0.42	1
TXNIP	Amp_17q23.3	0.42	1
ZFP36L1	Del_17p12	0.42	1
19q-Amp	Del_2q22.1	0.42	1
1q-Amp	Amp_6p22.3	0.42	1
8p-Del	Amp_11q13.3	0.42	1
ARID1A	PSIP1	0.421	1
ARID1A	Del_2q22.1	0.421	1
CUL1	Amp_10p14	0.421	1
PKHD1	Del_4q22.1	0.421	1
ARID1A	Del_17p12	0.422	1
ARID1B	10q-Del	0.422	1
ARID1B	Del_15q13.1	0.422	1
CNNM4	3q-Amp	0.422	1
CNNM4	10q-Del	0.422	1
KLF5	3q-Amp	0.422	1
KLF5	Del_15q13.1	0.422	1
METTL3	Amp_4p16.3	0.422	1
NF2	3q-Amp	0.422	1
NF2	Del_15q13.1	0.422	1
PKHD1	Del_11q23.3	0.422	1
SF1	3q-Amp	0.422	1
SF1	6q-Del	0.422	1
ZBTB7B	8p-Del	0.422	1
8q-Amp	8p-Del	0.422	1
Amp_4p16.3	Del_18q23	0.422	1
Amp_16p13.2	Del_11q23.3	0.422	1
ARID1B	FOXA1	0.423	1
ARID1B	PTEN	0.423	1
ARID1B	Del_1p36.11	0.423	1
CDKN1A	FAM47C	0.423	1
CDKN1A	RAI1	0.423	1
CNOT1	11q-Del	0.423	1
CTNNB1	4q-Del	0.423	1
FAM47C	11q-Del	0.423	1
FAM47C	Del_19p13.3	0.423	1
FGFR3	KRAS	0.423	1
FOXA1	4q-Del	0.423	1
KLF5	PTEN	0.423	1
KLF5	Del_1p36.11	0.423	1
KRAS	STAG2	0.423	1
NF1	9q-Del	0.423	1
RBM10	Del_19p13.3	0.423	1
RUNX1	Amp_8p11.23	0.423	1
RUNX1	Del_16p13.3	0.423	1
STAG2	Del_Xp11.3	0.423	1
1q-Amp	7p-Amp	0.423	1
1q-Amp	4q-Del	0.423	1
7p-Amp	Del_1p36.11	0.423	1
Amp_10p14	Del_5q12.1	0.423	1
ASXL2	Amp_12q15	0.424	1
C3orf70	Amp_13q22.1	0.424	1
C3orf70	Del_6p25.3	0.424	1
C3orf70	Del_16q23.1	0.424	1
CUL1	Amp_12q15	0.424	1
CUL1	Del_6p25.3	0.424	1
FBXW7	Amp_6q21	0.424	1
HES1	Amp_1p34.2	0.424	1
MLL	Amp_17q12	0.424	1
ZBTB7B	Amp_1p34.2	0.424	1
5p-Amp	Del_9p23	0.424	1
ARID1B	Amp_10p14	0.425	1
CSMD3	20p-Amp	0.425	1
DNAH6	7q-Amp	0.425	1
FAM47C	Del_8p23.3	0.425	1
HRAS	7q-Amp	0.425	1
HRAS	15q-Del	0.425	1
STAG2	20p-Amp	0.425	1
STAG2	Del_22q13.32	0.425	1
TXNIP	15q-Del	0.425	1
FAT1	Amp_7p21.1	0.426	1
5p-Amp	Del_11q23.3	0.426	1
ASXL2	Amp_11q13.3	0.427	1
CDKN1A	IDH1	0.427	1
CNOT1	Amp_11q13.3	0.427	1
IDH1	5q-Del	0.427	1
RBM10	Amp_11q13.3	0.427	1
11q-Del	Amp_10p14	0.427	1
5q-Del	Amp_10p14	0.427	1
Amp_3q26.33	Amp_17q12	0.427	1
MLL3	Amp_3q26.33	0.428	1
TMCO4	8q-Amp	0.428	1
8q-Amp	Del_Xq21.33	0.428	1
5q-Del	Amp_7p11.2	0.428	1
Amp_7p11.2	Del_19p13.3	0.428	1
Amp_11q22.2	Del_13q14.2	0.428	1
Amp_17q23.3	Del_2q34	0.428	1
ARID1A	KIAA1267	0.429	1
FBXW7	Del_4q34.2	0.429	1
KIAA1267	Amp_5p15.33	0.429	1
SCARF2	Del_14q24.1	0.429	1
20p-Amp	4p-Del	0.429	1
19p-Del	Del_14q24.1	0.429	1
Amp_17q12	Del_5q12.1	0.429	1
IDH1	Del_9p21.3	0.43	1
PARD3	TSC1	0.43	1
PTEN	Amp_20q11.21	0.43	1
TSC1	Del_12p13.1	0.43	1
1q-Amp	Amp_20q11.21	0.43	1
8q-Amp	18q-Del	0.43	1
Amp_12q15	Del_2q37.1	0.43	1
Amp_17q12	Del_11p15.5	0.43	1
ARID1A	EP300	0.431	1
CNOT1	RPTN	0.431	1
CNOT1	Del_7q36.3	0.431	1
FAM47C	19q-Amp	0.431	1
FAM47C	Amp_4q13.3	0.431	1
FBXW7	ZFP36L1	0.431	1
FBXW7	Del_14q24.1	0.431	1
HES1	9q-Del	0.431	1
MLL2	5q-Del	0.431	1
RAI1	19q-Amp	0.431	1
RBM10	RPTN	0.431	1
RBM10	Amp_4q13.3	0.431	1
RBM10	Del_7q36.3	0.431	1
ZBTB7B	Del_5q12.1	0.431	1
9q-Del	Amp_6q21	0.431	1
Amp_1p34.2	Amp_22q12.2	0.431	1
CREBBP	NFE2L2	0.432	1
CREBBP	RXRA	0.432	1
CREBBP	16p-Del	0.432	1
DNAH6	RB1	0.432	1
DNAH6	9p-Del	0.432	1
ERBB2	Amp_4q13.3	0.432	1
ERBB2	Del_7q36.3	0.432	1
HLA-A	Amp_7p11.2	0.432	1
KLF5	Amp_8p11.21	0.432	1
KLF5	Del_2q22.1	0.432	1
NFE2L2	Del_6q27	0.432	1
NRAS	Amp_7p11.2	0.432	1
NUDT11	Amp_7p11.2	0.432	1
UNC93B1	Amp_7p11.2	0.432	1
19p-Del	Del_9p23	0.432	1
4q-Del	Del_2q22.1	0.432	1
CDKN2A	TMCO4	0.434	1
CDKN2A	Del_Xq21.33	0.434	1
CNNM4	Amp_16p13.2	0.434	1
KIAA1267	Del_Xp11.3	0.434	1
KRAS	22q-Del	0.434	1
MLL2	Amp_6p22.3	0.434	1
NF2	PKHD1	0.434	1
NFE2L2	RUNX1	0.434	1
NFE2L2	Del_Xp11.3	0.434	1
PKHD1	SF1	0.434	1
RHOB	17q-Amp	0.434	1
RHOB	Del_1q32.1	0.434	1
RUNX1	22q-Del	0.434	1
15q-Del	Amp_17q12	0.434	1
16p-Del	Del_Xp11.3	0.434	1
EP300	ZFP36L1	0.435	1
NF1	NFE2L2	0.435	1
NF1	16p-Del	0.435	1
NF1	Amp_11q22.2	0.435	1
ZFP36L1	11p-Del	0.435	1
CSMD3	7q-Amp	0.436	1
CTNNB1	Del_2q34	0.436	1
STAG2	7q-Amp	0.436	1
CSMD3	9p-Del	0.437	1
MLL2	3p-Amp	0.437	1
MLL3	RB1	0.437	1
MLL3	9p-Del	0.437	1
TSC1	Amp_19q13.43	0.437	1
Amp_1p34.2	Amp_20q11.21	0.437	1
C3orf70	20p-Amp	0.438	1
CDKN1A	3q-Amp	0.438	1
CDKN1A	Del_15q13.1	0.438	1
IDH1	Amp_19q13.43	0.438	1
METTL3	20p-Amp	0.438	1
PARD3	PTEN	0.439	1
PARD3	1q-Amp	0.439	1
PARD3	Del_1p36.11	0.439	1
PLCXD3	20q-Amp	0.439	1
RAI1	Amp_19q13.43	0.439	1
RHOB	Amp_12q15	0.439	1
THRAP3	Del_12p13.1	0.439	1
8q-Amp	10q-Del	0.439	1
Amp_11q13.3	Amp_12q15	0.439	1
Amp_11q13.3	Amp_13q22.1	0.439	1
ERCC2	17p-Del	0.44	1
HES1	Del_13q14.2	0.44	1
HLA-A	Amp_13q22.1	0.44	1
HLA-A	Del_6p25.3	0.44	1
MLL	NUDT11	0.44	1
NRAS	Amp_12q15	0.44	1
NRAS	Amp_13q22.1	0.44	1
NRAS	Del_6p25.3	0.44	1
NRAS	Del_16q23.1	0.44	1
NUDT11	Amp_12q15	0.44	1
NUDT11	Del_6p25.3	0.44	1
NUDT11	Del_16q23.1	0.44	1
PKHD1	7p-Amp	0.44	1
PKHD1	4q-Del	0.44	1
PKHD1	Amp_8p11.21	0.44	1
UNC93B1	Amp_12q15	0.44	1
UNC93B1	Amp_13q22.1	0.44	1
4q-Del	Amp_16p13.2	0.44	1
ARID1A	Del_15q13.1	0.441	1
ATM	RBM10	0.441	1
CNNM4	RB1	0.441	1
CNNM4	9p-Del	0.441	1
CNOT1	Del_4q34.2	0.441	1
ERBB3	Del_4q22.1	0.441	1
FBXW7	8p-Del	0.441	1
NF2	Amp_1q23.3	0.441	1
RBM10	Del_4q34.2	0.441	1
SF1	9p-Del	0.441	1
3q-Amp	Amp_5p15.33	0.441	1
CUL1	RHOA	0.442	1
CUL1	SHANK1	0.442	1
KIAA1267	5p-Amp	0.442	1
PIK3CA	Del_11q23.3	0.442	1
5p-Amp	22q-Del	0.442	1
C3orf70	Del_5q12.1	0.443	1
EP300	Del_13q14.2	0.443	1
FAM47C	Del_9p21.3	0.443	1
METTL3	Del_5q12.1	0.443	1
3p-Amp	Del_5q12.1	0.443	1
ASXL2	20p-Amp	0.444	1
CREBBP	19q-Amp	0.444	1
HRAS	Amp_4p16.3	0.444	1
KRAS	Amp_11q13.3	0.444	1
RPTN	Del_11q25	0.444	1
RUNX1	Amp_11q13.3	0.444	1
RUNX1	Del_10q23.31	0.444	1
19q-Amp	Amp_7p21.1	0.444	1
20p-Amp	Amp_17q12	0.444	1
8q-Amp	9q-Del	0.444	1
Amp_11q13.3	Del_Xp11.3	0.444	1
Del_7q36.3	Del_11q25	0.444	1
ARID1A	Amp_17q12	0.445	1
FAT1	9p-Del	0.445	1
HRAS	Amp_7p11.2	0.445	1
PARD3	Amp_8q22.3	0.445	1
TXNIP	Amp_7p11.2	0.445	1
C3orf70	Del_9p23	0.446	1
FAM47C	Amp_1q23.3	0.446	1
KDM6A	Amp_20q11.21	0.446	1
MLL2	16p-Del	0.446	1
FAT1	FOXA1	0.447	1
PARD3	10q-Del	0.447	1
PTEN	20q-Amp	0.447	1
THRAP3	20q-Amp	0.447	1
THRAP3	Del_11q23.3	0.447	1
ZFP36L1	Del_11p15.5	0.447	1
17p-Del	Amp_8q22.3	0.447	1
ELF3	NFE2L2	0.448	1
ELF3	RXRA	0.448	1
ELF3	16p-Del	0.448	1
ERBB2	4q-Del	0.448	1
KIAA1267	Amp_17q23.3	0.448	1
KLF5	Amp_19q12	0.448	1
MLL3	Amp_4q13.3	0.448	1
TMCO4	ZFP36L1	0.448	1
ZFP36L1	Del_Xq21.33	0.448	1
20q-Amp	Amp_3q26.33	0.448	1
5q-Del	Amp_12q15	0.448	1
Amp_4p16.3	Del_4q22.1	0.448	1
Amp_11q22.2	Del_3p14.2	0.448	1
HLA-A	20p-Amp	0.449	1
IDH1	TSC1	0.449	1
NRAS	Del_22q13.32	0.449	1
NUDT11	20p-Amp	0.449	1
RHOA	11p-Del	0.449	1
RPTN	7q-Amp	0.449	1
SCARF2	Del_4q22.1	0.449	1
UNC93B1	20p-Amp	0.449	1
UNC93B1	Del_22q13.32	0.449	1
ZFP36L1	Del_18q23	0.449	1
19q-Amp	7q-Amp	0.449	1
5p-Amp	Amp_6q21	0.449	1
7q-Amp	Amp_4q13.3	0.449	1
15q-Del	Del_7q36.3	0.449	1
ARID1A	NUDT11	0.45	1
ARID1A	Amp_5p15.33	0.45	1
ARID1B	RUNX1	0.45	1
CDKN1A	7q-Amp	0.45	1
CDKN1A	15q-Del	0.45	1
FAT1	Del_12p13.1	0.45	1
HLA-A	Amp_5p15.33	0.45	1
KLF5	RUNX1	0.45	1
KLF5	Del_Xp11.3	0.45	1
KRAS	7p-Amp	0.45	1
MLL2	PLCXD3	0.45	1
RUNX1	7p-Amp	0.45	1
UNC93B1	Amp_5p15.33	0.45	1
7p-Amp	Del_Xp11.3	0.45	1
CSMD3	ERBB3	0.451	1
ERBB3	STAG2	0.451	1
HES1	14q-Del	0.451	1
HES1	4p-Del	0.451	1
RHOB	Del_9p23	0.451	1
SPTAN1	ZFP36L1	0.451	1
ZBTB7B	14q-Del	0.451	1
CUL1	ERBB3	0.452	1
ELF3	TP53	0.452	1
ATM	Del_9p23	0.453	1
ERBB2	STAG2	0.453	1
ERBB2	Amp_8p11.23	0.453	1
IDH1	Del_11p15.5	0.453	1
4q-Del	Amp_1q21.3	0.453	1
BCL2L1	RB1	0.454	1
NFE2L2	Amp_1p34.2	0.454	1
16p-Del	Amp_1p34.2	0.454	1
22q-Del	Amp_1p34.2	0.454	1
Amp_7p11.2	Amp_12q15	0.454	1
CUL1	Del_13q14.2	0.455	1
KRAS	Del_4q34.2	0.455	1
3p-Amp	Del_13q14.2	0.455	1
5q-Del	Amp_3q26.33	0.455	1
CNOT1	CTNNB1	0.456	1
CNOT1	FOXA1	0.456	1
CNOT1	1q-Amp	0.456	1
CTNNB1	FAM47C	0.456	1
CTNNB1	RBM10	0.456	1
ELF3	19q-Amp	0.456	1
FAM47C	FOXA1	0.456	1
FAM47C	PTEN	0.456	1
FOXA1	RAI1	0.456	1
PLCXD3	Del_8p23.3	0.456	1
RAI1	1q-Amp	0.456	1
RBM10	TSC1	0.456	1
RBM10	1q-Amp	0.456	1
RBM10	Del_1p36.11	0.456	1
Amp_4q13.3	Del_3p14.2	0.456	1
HRAS	Del_9p21.3	0.457	1
MLL3	Amp_20q11.21	0.457	1
ELF3	ERBB3	0.458	1
ERBB3	Del_3p14.2	0.458	1
ERCC2	Del_18q23	0.458	1
PKHD1	Amp_19q12	0.458	1
Amp_16p13.2	Amp_19q12	0.458	1
ASXL2	SCARF2	0.459	1
ATM	Amp_13q22.1	0.459	1
CTNNB1	Amp_8p11.21	0.459	1
CTNNB1	Del_2q22.1	0.459	1
DNAH6	Del_6p25.3	0.459	1
ERBB3	HLA-A	0.459	1
HRAS	Amp_12q15	0.459	1
KLF5	NF1	0.459	1
NF2	Amp_1p34.2	0.459	1
PTEN	Amp_8p11.21	0.459	1
SCARF2	Amp_17q12	0.459	1
THRAP3	Amp_8p11.21	0.459	1
TXNIP	Amp_12q15	0.459	1
1q-Amp	Amp_8p11.21	0.459	1
19p-Del	Amp_17q12	0.459	1
MLL3	Del_22q13.32	0.46	1
ARID1A	Amp_6q21	0.461	1
FGFR3	ZNF185	0.461	1
IDH1	6q-Del	0.461	1
PKHD1	11q-Del	0.461	1
PKHD1	Del_19p13.3	0.461	1
STAG2	ZNF185	0.461	1
ZNF185	Amp_8p11.23	0.461	1
ZNF185	Del_16p13.3	0.461	1
Amp_5p15.33	Amp_6q21	0.461	1
Amp_16p13.2	Del_19p13.3	0.461	1
CREBBP	PLCXD3	0.462	1
FBXW7	Del_2q34	0.462	1
PLCXD3	Amp_7p21.1	0.462	1
PLCXD3	Del_6q27	0.462	1
Amp_1p34.2	Del_2q34	0.462	1
ARID1B	CREBBP	0.463	1
C3orf70	CUL1	0.463	1
C3orf70	3p-Amp	0.463	1
CUL1	METTL3	0.463	1
ERBB3	9q-Del	0.463	1
GNA13	Amp_11q22.2	0.463	1
KIAA1267	MBD1	0.463	1
KIAA1267	17q-Amp	0.463	1
KIAA1267	Del_Xq21.33	0.463	1
MBD1	NFE2L2	0.463	1
MBD1	RXRA	0.463	1
MLL2	8p-Del	0.463	1
NFE2L2	TMCO4	0.463	1
NFE2L2	17q-Amp	0.463	1
NFE2L2	Del_1q32.1	0.463	1
NFE2L2	Del_Xq21.33	0.463	1
PARD3	Amp_10p14	0.463	1
RXRA	Del_1q32.1	0.463	1
TMCO4	16p-Del	0.463	1
TMCO4	22q-Del	0.463	1
17q-Amp	22q-Del	0.463	1
7p-Amp	Del_6q27	0.463	1
16p-Del	Del_1q32.1	0.463	1
ARID1B	Amp_6p22.3	0.465	1
ARID1B	Del_13q14.2	0.465	1
ASXL2	ERBB3	0.465	1
C3orf70	Amp_1q23.3	0.465	1
CNOT1	9p-Del	0.465	1
ERBB3	Amp_17q12	0.465	1
FAM47C	9p-Del	0.465	1
HRAS	Amp_10p14	0.465	1
MLL2	Amp_20q11.21	0.465	1
PKHD1	Del_2q37.1	0.465	1
RAI1	RB1	0.465	1
RB1	RBM10	0.465	1
RHOB	Amp_6q21	0.465	1
4q-Del	Amp_6p22.3	0.465	1
KRAS	Amp_1q21.3	0.466	1
PARD3	Del_Xp11.3	0.466	1
PKHD1	Del_12p13.1	0.466	1
SPTAN1	Del_8p21.3	0.466	1
5p-Amp	11p-Del	0.466	1
Amp_16p13.2	Del_12p13.1	0.466	1
Del_12p13.1	Del_Xp11.3	0.466	1
CNNM4	Amp_10p14	0.467	1
ELF3	10q-Del	0.467	1
ELF3	Amp_1q23.3	0.467	1
MLL	Amp_22q12.2	0.467	1
MLL2	Del_17p12	0.467	1
CDKN1A	Del_22q13.32	0.468	1
EP300	FAT1	0.468	1
EP300	20q-Amp	0.468	1
FAT1	11p-Del	0.468	1
MLL	Amp_20q11.21	0.468	1
NF1	Amp_8p11.21	0.468	1
RPTN	Amp_4p16.3	0.468	1
ZBTB7B	11p-Del	0.468	1
ZBTB7B	17p-Del	0.468	1
17p-Del	Amp_6q21	0.468	1
Amp_5p15.33	Del_7q36.3	0.468	1
CSMD3	GNA13	0.469	1
CSMD3	MBD1	0.469	1
CSMD3	17q-Amp	0.469	1
CTNNB1	Del_11p15.5	0.469	1
FAM47C	Del_2q34	0.469	1
FBXW7	Del_4q22.1	0.469	1
FGFR3	MBD1	0.469	1
FGFR3	17q-Amp	0.469	1
GNA13	STAG2	0.469	1
NRAS	Del_17p12	0.469	1
NUDT11	Del_17p12	0.469	1
PTEN	Del_11p15.5	0.469	1
THRAP3	Del_11p15.5	0.469	1
17q-Amp	Amp_8p11.23	0.469	1
Del_1q32.1	Del_16p13.3	0.469	1
CREBBP	Amp_19q12	0.47	1
ELF3	PLCXD3	0.47	1
EP300	Amp_11q22.2	0.47	1
ERBB2	Del_9p23	0.47	1
KIAA1267	17p-Del	0.47	1
MLL3	7q-Amp	0.47	1
NFE2L2	11p-Del	0.47	1
PKHD1	Del_18q23	0.47	1
PLCXD3	Amp_17q23.3	0.47	1
SCARF2	11q-Del	0.47	1
SCARF2	5q-Del	0.47	1
SCARF2	Del_19p13.3	0.47	1
16p-Del	17p-Del	0.47	1
Amp_5p15.33	Del_11p15.5	0.47	1
Amp_16p13.2	Del_18q23	0.47	1
Del_9p21.3	Del_19p13.3	0.47	1
CTNNB1	ERBB2	0.471	1
ERBB2	FOXA1	0.471	1
ERBB2	PTEN	0.471	1
ERBB2	Del_1p36.11	0.471	1
THRAP3	Amp_19q12	0.471	1
1q-Amp	Amp_19q12	0.471	1
ARID1A	Amp_20q11.21	0.472	1
CNOT1	Del_9p23	0.472	1
DNAH6	Del_22q13.32	0.472	1
FAM47C	Del_9p23	0.472	1
HRAS	Del_22q13.32	0.472	1
TXNIP	Del_22q13.32	0.472	1
20p-Amp	5p-Amp	0.472	1
4p-Del	Amp_22q12.2	0.472	1
Amp_1p34.2	Del_13q14.2	0.472	1
Amp_3q26.33	Amp_8p11.21	0.472	1
ARID1A	Amp_4p16.3	0.473	1
ATM	5q-Del	0.473	1
ATM	Del_19p13.3	0.473	1
CDKN1A	Del_4q34.2	0.473	1
MLL3	Amp_7p21.1	0.473	1
STAG2	Amp_4p16.3	0.473	1
TSC1	Amp_20q11.21	0.473	1
Amp_4p16.3	Amp_8p11.23	0.473	1
Amp_4p16.3	Del_16p13.3	0.473	1
CNOT1	3q-Amp	0.474	1
CTNNB1	PSIP1	0.474	1
CTNNB1	15q-Del	0.474	1
FAM47C	Del_15q13.1	0.474	1
FOXA1	15q-Del	0.474	1
FOXQ1	7q-Amp	0.474	1
FOXQ1	15q-Del	0.474	1
PSIP1	Del_1p36.11	0.474	1
RAI1	10q-Del	0.474	1
RAI1	6q-Del	0.474	1
RBM10	10q-Del	0.474	1
ZBTB7B	Del_9p21.3	0.474	1
7q-Amp	Del_1p36.11	0.474	1
Amp_6q21	Del_9p21.3	0.474	1
CSMD3	RHOB	0.475	1
KDM6A	1q-Amp	0.475	1
KDM6A	Del_1p36.11	0.475	1
KRAS	Amp_6p22.3	0.475	1
SCARF2	Amp_1q21.3	0.475	1
ZNF185	Amp_3q26.33	0.475	1
Amp_6p22.3	Del_Xp11.3	0.475	1
CNNM4	8p-Del	0.476	1
FAT1	Del_4q22.1	0.476	1
PIK3CA	Amp_8q22.3	0.476	1
RB1	Amp_3p25.2	0.476	1
20q-Amp	Del_4q22.1	0.476	1
7p-Amp	Del_8p21.3	0.476	1
9p-Del	Amp_3p25.2	0.476	1
Amp_7p11.2	Del_2q34	0.476	1
Amp_16p13.2	Del_11q25	0.476	1
ARID1A	7p-Amp	0.477	1
ARID1A	4q-Del	0.477	1
BCL2L1	8p-Del	0.477	1
CDKN1A	Del_13q14.2	0.477	1
CSMD3	TSC1	0.477	1
HLA-A	Del_14q24.1	0.477	1
NUDT11	Del_14q24.1	0.477	1
RB1	6q-Del	0.477	1
STAG2	TSC1	0.477	1
UNC93B1	18q-Del	0.477	1
Amp_7p11.2	Del_22q13.32	0.477	1
Amp_12q15	Del_6p25.3	0.477	1
Amp_12q15	Del_16q23.1	0.477	1
ARID1B	5p-Amp	0.478	1
CSMD3	Amp_7p21.1	0.478	1
ERBB2	MLL2	0.478	1
FBXW7	KLF5	0.478	1
FGFR3	Del_6q27	0.478	1
HES1	Del_18q23	0.478	1
KRAS	Del_2q34	0.478	1
MLL2	Amp_19q12	0.478	1
RHOA	Del_4q22.1	0.478	1
STAG2	Amp_7p21.1	0.478	1
ZBTB7B	8q-Amp	0.478	1
8q-Amp	Amp_6q21	0.478	1
4q-Del	Amp_20q11.21	0.478	1
Del_2q34	Del_Xp11.3	0.478	1
ARID1B	MBD1	0.479	1
ARID1B	Amp_17q23.3	0.479	1
ARID1B	Del_1q32.1	0.479	1
ARID1B	Del_Xq21.33	0.479	1
ASXL2	MLL3	0.479	1
CREBBP	Amp_6p22.3	0.479	1
CSMD3	Del_10q23.31	0.479	1
ELF3	KLF5	0.479	1
EP300	STAG2	0.479	1
FBXW7	20q-Amp	0.479	1
FBXW7	Amp_3p25.2	0.479	1
FGFR3	Amp_11q13.3	0.479	1
GNA13	7p-Amp	0.479	1
GNA13	4q-Del	0.479	1
KDM6A	Amp_8p11.23	0.479	1
KLF5	TMCO4	0.479	1
KLF5	Del_1q32.1	0.479	1
MBD1	7p-Amp	0.479	1
MBD1	4q-Del	0.479	1
STAG2	Del_10q23.31	0.479	1
17q-Amp	7p-Amp	0.479	1
17q-Amp	4q-Del	0.479	1
20q-Amp	Amp_1p34.2	0.479	1
7p-Amp	Del_1q32.1	0.479	1
17p-Del	Amp_8p11.23	0.479	1
4q-Del	Amp_17q23.3	0.479	1
4q-Del	Del_1q32.1	0.479	1
Amp_1p34.2	Del_11q23.3	0.479	1
Amp_6p22.3	Del_11q25	0.479	1
Amp_8p11.23	Amp_11q13.3	0.479	1
ARID1A	4p-Del	0.48	1
HES1	Amp_22q12.2	0.48	1
PARD3	Amp_19q12	0.48	1
RB1	19q-Amp	0.48	1
RB1	Del_18q23	0.48	1
RXRA	SPTAN1	0.48	1
SPTAN1	Amp_11q22.2	0.48	1
STAG2	Amp_1q21.3	0.48	1
ZBTB7B	Amp_22q12.2	0.48	1
7q-Amp	Del_8p23.3	0.48	1
8q-Amp	9p-Del	0.48	1
16p-Del	Amp_7p11.2	0.48	1
22q-Del	Amp_7p11.2	0.48	1
9p-Del	Amp_4q13.3	0.48	1
SCARF2	Amp_19q13.43	0.481	1
TSC1	3q-Amp	0.481	1
TSC1	Del_15q13.1	0.481	1
19p-Del	Amp_19q13.43	0.481	1
SPTAN1	Amp_4q13.3	0.482	1
SPTAN1	Del_7q36.3	0.482	1
Amp_4q13.3	Amp_7p11.2	0.482	1
Amp_7p11.2	Del_7q36.3	0.482	1
ASXL2	Del_2q34	0.483	1
CNOT1	KRAS	0.483	1
CNOT1	RUNX1	0.483	1
CNOT1	Del_Xp11.3	0.483	1
CREBBP	FOXQ1	0.483	1
CREBBP	THRAP3	0.483	1
CREBBP	Del_1p36.11	0.483	1
CTNNB1	Del_6q27	0.483	1
EP300	Del_9p23	0.483	1
FAM47C	KRAS	0.483	1
FAM47C	RUNX1	0.483	1
FAM47C	Del_11q23.3	0.483	1
FOXQ1	Del_11q25	0.483	1
KRAS	RAI1	0.483	1
KRAS	RBM10	0.483	1
PIK3CA	11q-Del	0.483	1
PIK3CA	5q-Del	0.483	1
RAI1	20q-Amp	0.483	1
RAI1	Del_11q23.3	0.483	1
RBM10	RUNX1	0.483	1
NFE2L2	8q-Amp	0.484	1
NFE2L2	Del_18q23	0.484	1
PSIP1	TSC1	0.484	1
TSC1	7q-Amp	0.484	1
TSC1	15q-Del	0.484	1
ZFP36L1	Del_22q13.32	0.484	1
20p-Amp	Amp_22q12.2	0.484	1
8q-Amp	22q-Del	0.484	1
ARID1A	5q-Del	0.485	1
C3orf70	DNAH6	0.485	1
C3orf70	HRAS	0.485	1
CNNM4	9q-Del	0.485	1
CUL1	DNAH6	0.485	1
CUL1	HRAS	0.485	1
DNAH6	3p-Amp	0.485	1
NF1	11q-Del	0.485	1
NF1	5q-Del	0.485	1
NF2	Del_5q12.1	0.485	1
RUNX1	Amp_20q11.21	0.485	1
SF1	Del_5q12.1	0.485	1
20p-Amp	Del_4q34.2	0.485	1
18q-Del	Amp_7p21.1	0.485	1
CNNM4	4p-Del	0.486	1
CREBBP	Del_13q14.2	0.486	1
ERBB3	TXNIP	0.486	1
HES1	Del_17p12	0.486	1
NF2	14q-Del	0.486	1
SF1	14q-Del	0.486	1
SF1	4p-Del	0.486	1
Amp_10p14	Del_14q24.1	0.486	1
ARID1A	18q-Del	0.487	1
ERCC2	HLA-A	0.487	1
ERCC2	NRAS	0.487	1
ERCC2	NUDT11	0.487	1
ERCC2	UNC93B1	0.487	1
MLL3	ZFP36L1	0.487	1
PLCXD3	SPTAN1	0.487	1
ZFP36L1	Del_2q37.1	0.487	1
5p-Amp	Amp_1p34.2	0.487	1
18q-Del	Amp_5p15.33	0.487	1
DNAH6	Del_5q12.1	0.488	1
RHOA	RPTN	0.488	1
RHOA	Del_7q36.3	0.488	1
RPTN	SHANK1	0.488	1
SHANK1	19q-Amp	0.488	1
SHANK1	Amp_4q13.3	0.488	1
SHANK1	Del_7q36.3	0.488	1
Amp_13q22.1	Del_9p23	0.488	1
ARID1A	Del_6p25.3	0.489	1
BCL2L1	Del_13q14.2	0.489	1
CREBBP	Amp_8q22.3	0.489	1
ERBB3	5q-Del	0.489	1
FBXW7	Amp_17q12	0.489	1
MBD1	PIK3CA	0.489	1
PIK3CA	Del_Xq21.33	0.489	1
RUNX1	20q-Amp	0.489	1
CDKN2A	9p-Del	0.49	1
ERBB3	Amp_11q13.3	0.49	1
GNA13	Amp_11q13.3	0.49	1
RB1	Amp_3q26.33	0.49	1
SCARF2	Amp_20q11.21	0.49	1
TMCO4	Amp_3q26.33	0.49	1
17q-Amp	Amp_3q26.33	0.49	1
Amp_3q26.33	Del_1q32.1	0.49	1
ARID1A	Amp_7p21.1	0.491	1
C3orf70	11p-Del	0.491	1
EP300	Del_17p12	0.491	1
CNOT1	PKHD1	0.492	1
CNOT1	Amp_16p13.2	0.492	1
PKHD1	RBM10	0.492	1
RAI1	Amp_16p13.2	0.492	1
CTNNB1	Amp_4p16.3	0.493	1
ERBB2	KDM6A	0.493	1
FOXA1	Amp_4p16.3	0.493	1
FOXQ1	Amp_4p16.3	0.493	1
RHOB	ZFP36L1	0.493	1
THRAP3	Amp_4p16.3	0.493	1
Amp_19q13.43	Del_22q13.32	0.493	1
CNNM4	Del_13q14.2	0.494	1
ELF3	Amp_16p13.2	0.494	1
HES1	KIAA1267	0.494	1
HES1	22q-Del	0.494	1
HES1	Amp_11q22.2	0.494	1
KIAA1267	ZBTB7B	0.494	1
KIAA1267	Amp_6q21	0.494	1
NF2	Del_13q14.2	0.494	1
NFE2L2	Amp_6q21	0.494	1
RXRA	Amp_6q21	0.494	1
ZBTB7B	16p-Del	0.494	1
ZBTB7B	22q-Del	0.494	1
5p-Amp	Del_19p13.3	0.494	1
16p-Del	Amp_6q21	0.494	1
Amp_6q21	Amp_11q22.2	0.494	1
Amp_16p13.2	Del_3p14.2	0.494	1
CREBBP	Del_12p13.1	0.495	1
CTNNB1	Del_3p14.2	0.495	1
CUL1	ERCC2	0.495	1
ELF3	Del_1p36.11	0.495	1
ERBB2	Del_8p23.3	0.495	1
GNA13	Del_12p13.1	0.495	1
KIAA1267	4p-Del	0.495	1
MBD1	Del_12p13.1	0.495	1
PARD3	TMCO4	0.495	1
PARD3	Del_1q32.1	0.495	1
PTEN	Del_3p14.2	0.495	1
17q-Amp	Del_12p13.1	0.495	1
1q-Amp	Del_3p14.2	0.495	1
4p-Del	Amp_11q22.2	0.495	1
6q-Del	Amp_6p22.3	0.495	1
9q-Del	Del_13q14.2	0.495	1
Amp_4q13.3	Amp_13q22.1	0.495	1
Amp_17q23.3	Del_1p36.11	0.495	1
Del_6q27	Del_12p13.1	0.495	1
ARID1A	5p-Amp	0.496	1
MLL2	Del_8p21.3	0.496	1
PLCXD3	Amp_12q15	0.496	1
14q-Del	Amp_10p14	0.496	1
4p-Del	Amp_10p14	0.496	1
FAT1	SPTAN1	0.497	1
KIAA1267	Del_6p25.3	0.497	1
MLL	RXRA	0.497	1
MLL	16p-Del	0.497	1
NFE2L2	Amp_12q15	0.497	1
NFE2L2	Del_16q23.1	0.497	1
NRAS	Del_4q22.1	0.497	1
PARD3	Amp_1q21.3	0.497	1
RXRA	Amp_12q15	0.497	1
RXRA	Amp_13q22.1	0.497	1
Amp_11q22.2	Del_16q23.1	0.497	1
CNOT1	Amp_8p11.21	0.498	1
CSMD3	Amp_1q23.3	0.498	1
MLL2	SPTAN1	0.498	1
RAI1	Amp_8p11.21	0.498	1
RBM10	Amp_8p11.21	0.498	1
RBM10	Del_2q22.1	0.498	1
TSC1	Amp_12q15	0.498	1
TSC1	Del_6p25.3	0.498	1
TSC1	Del_16q23.1	0.498	1
CDKN2A	SF1	0.499	1
CNNM4	RHOB	0.499	1
CTNNB1	Del_2q37.1	0.499	1
FOXQ1	MLL3	0.499	1
HRAS	MLL2	0.499	1
HRAS	Del_9p23	0.499	1
TXNIP	Del_13q14.2	0.499	1
KDM6A	Amp_7p11.2	0.5	1
MLL	Del_22q13.32	0.5	1
Amp_1q21.3	Del_9p21.3	0.5	1
Amp_22q12.2	Del_9p21.3	0.5	1
ATM	MBD1	0.501	1
KRAS	PSIP1	0.501	1
KRAS	7q-Amp	0.501	1
PSIP1	3q-Amp	0.501	1
RUNX1	7q-Amp	0.501	1
RUNX1	15q-Del	0.501	1
RUNX1	Amp_8p11.21	0.501	1
RUNX1	Del_2q22.1	0.501	1
7q-Amp	10q-Del	0.501	1
7q-Amp	Del_Xp11.3	0.501	1
15q-Del	Del_Xp11.3	0.501	1
ELF3	MLL3	0.502	1
NF1	Del_18q23	0.502	1
ASXL2	Del_11q23.3	0.503	1
CREBBP	Del_9p23	0.503	1
FBXW7	Del_12p13.1	0.503	1
NF1	Del_11q25	0.503	1
SCARF2	10q-Del	0.503	1
Amp_1p34.2	Del_12p13.1	0.503	1
Amp_7p11.2	Del_17p12	0.503	1
CSMD3	Amp_17q23.3	0.504	1
FGFR3	Del_3p14.2	0.504	1
PKHD1	TSC1	0.504	1
PLCXD3	20p-Amp	0.504	1
PLCXD3	Del_22q13.32	0.504	1
7q-Amp	Del_2q34	0.504	1
CSMD3	Del_14q24.1	0.505	1
3q-Amp	Amp_7p11.2	0.505	1
18q-Del	Amp_8p11.23	0.505	1
Amp_7p11.2	Del_15q13.1	0.505	1
ARID1B	17p-Del	0.506	1
EP300	7p-Amp	0.506	1
IDH1	TP53	0.506	1
NRAS	TP53	0.506	1
5p-Amp	Del_11q25	0.506	1
7p-Amp	11p-Del	0.506	1
7p-Amp	17p-Del	0.506	1
BCL2L1	EP300	0.507	1
CSMD3	6q-Del	0.507	1
DNAH6	HRAS	0.507	1
FGFR3	6q-Del	0.507	1
HRAS	TXNIP	0.507	1
NUDT11	Amp_17q12	0.507	1
STAG2	Del_15q13.1	0.507	1
7q-Amp	9p-Del	0.507	1
C3orf70	RPTN	0.508	1
C3orf70	Amp_4q13.3	0.508	1
CUL1	Amp_4q13.3	0.508	1
CUL1	Del_7q36.3	0.508	1
METTL3	19q-Amp	0.508	1
METTL3	Amp_4q13.3	0.508	1
METTL3	Del_7q36.3	0.508	1
RPTN	20p-Amp	0.508	1
19q-Amp	20p-Amp	0.508	1
3p-Amp	Amp_4q13.3	0.508	1
Amp_4p16.3	Del_8p21.3	0.508	1
C3orf70	TP53	0.509	1
CDKN1A	RHOA	0.509	1
CDKN1A	Amp_1p34.2	0.509	1
CUL1	Amp_1q21.3	0.509	1
DNAH6	Del_8p23.3	0.509	1
FBXW7	5q-Del	0.509	1
SHANK1	11q-Del	0.509	1
SHANK1	5q-Del	0.509	1
TXNIP	Del_8p23.3	0.509	1
CDKN2A	18q-Del	0.51	1
CDKN2A	Del_14q24.1	0.51	1
CNOT1	TP53	0.51	1
CUL1	Del_4q22.1	0.51	1
ELF3	PARD3	0.51	1
ERCC2	Del_11q25	0.51	1
HES1	7p-Amp	0.51	1
HES1	4q-Del	0.51	1
KLF5	Amp_6q21	0.51	1
PARD3	Del_3p14.2	0.51	1
RBM10	TP53	0.51	1
RHOB	Del_14q24.1	0.51	1
ZBTB7B	4q-Del	0.51	1
3p-Amp	Del_4q22.1	0.51	1
CNOT1	TMCO4	0.511	1
FAM47C	17q-Amp	0.511	1
FAM47C	Del_1q32.1	0.511	1
GNA13	RBM10	0.511	1
MBD1	RBM10	0.511	1
PKHD1	9p-Del	0.511	1
RAI1	TMCO4	0.511	1
RBM10	TMCO4	0.511	1
RBM10	17q-Amp	0.511	1
RBM10	Del_1q32.1	0.511	1
ZNF185	Amp_8p11.21	0.511	1
ZNF185	Del_2q22.1	0.511	1
FGFR3	RHOA	0.512	1
PKHD1	TP53	0.512	1
PTEN	RHOA	0.512	1
PTEN	SHANK1	0.512	1
RHOA	1q-Amp	0.512	1
RHOA	Del_1p36.11	0.512	1
SHANK1	1q-Amp	0.512	1
SHANK1	Amp_8p11.23	0.512	1
19p-Del	Amp_3p25.2	0.512	1
Amp_19q12	Del_Xp11.3	0.512	1
ELF3	Del_13q14.2	0.513	1
ERBB2	FAM47C	0.513	1
ERBB3	Amp_19q13.43	0.513	1
NF2	ZFP36L1	0.513	1
NF2	Amp_22q12.2	0.513	1
SF1	ZFP36L1	0.513	1
SF1	Amp_22q12.2	0.513	1
7p-Amp	Del_17p12	0.513	1
Amp_3p25.2	Del_Xp11.3	0.513	1
DNAH6	18q-Del	0.514	1
ERBB2	FBXW7	0.514	1
ERBB3	TP53	0.514	1
HRAS	18q-Del	0.514	1
HRAS	Del_14q24.1	0.514	1
KIAA1267	20p-Amp	0.514	1
KIAA1267	Del_22q13.32	0.514	1
SCARF2	Amp_16p13.2	0.514	1
CDKN2A	RXRA	0.515	1
CDKN2A	16p-Del	0.515	1
TP53	Del_11q25	0.515	1
CREBBP	Del_3p14.2	0.516	1
ELF3	Amp_7p21.1	0.516	1
FAM47C	8p-Del	0.516	1
NFE2L2	Amp_8q22.3	0.516	1
20q-Amp	Del_2q34	0.516	1
Amp_17q23.3	Del_11q25	0.516	1
CDKN1A	HLA-A	0.517	1
CDKN1A	UNC93B1	0.517	1
HLA-A	Del_19p13.3	0.517	1
NRAS	11q-Del	0.517	1
NRAS	Del_19p13.3	0.517	1
NUDT11	Del_19p13.3	0.517	1
UNC93B1	5q-Del	0.517	1
ARID1B	14q-Del	0.518	1
CSMD3	HES1	0.518	1
FGFR3	ZBTB7B	0.518	1
HES1	Del_16p13.3	0.518	1
KLF5	14q-Del	0.518	1
KLF5	4p-Del	0.518	1
PKHD1	Amp_1q21.3	0.518	1
STAG2	Del_17p12	0.518	1
Amp_8p11.23	Del_17p12	0.518	1
ATM	Amp_19q12	0.519	1
DNAH6	PIK3CA	0.519	1
FBXW7	11p-Del	0.519	1
HRAS	PIK3CA	0.519	1
MLL3	TP53	0.519	1
PKHD1	7q-Amp	0.519	1
RUNX1	Amp_4p16.3	0.519	1
ZNF185	Amp_19q12	0.519	1
15q-Del	Amp_16p13.2	0.519	1
EP300	ERBB2	0.52	1
KLF5	8q-Amp	0.52	1
PIK3CA	Del_8p23.3	0.52	1
PTEN	SPTAN1	0.52	1
SPTAN1	Del_1p36.11	0.52	1
1q-Amp	Amp_7p11.2	0.52	1
Amp_7p11.2	Del_1p36.11	0.52	1
CREBBP	Amp_3q26.33	0.521	1
Amp_7p21.1	Amp_11q13.3	0.521	1
Amp_11q13.3	Del_6q27	0.521	1
ATM	CDKN2A	0.522	1
EP300	SF1	0.522	1
ERBB3	Del_7q36.3	0.522	1
FAT1	MLL	0.522	1
IDH1	14q-Del	0.522	1
IDH1	4p-Del	0.522	1
KDM6A	Del_2q34	0.522	1
SF1	11p-Del	0.522	1
SF1	17p-Del	0.522	1
Amp_8p11.23	Del_2q37.1	0.522	1
Del_11q23.3	Del_16q23.1	0.522	1
ERBB2	Amp_3p25.2	0.523	1
KRAS	Del_11p15.5	0.523	1
NRAS	PIK3CA	0.523	1
NUDT11	PIK3CA	0.523	1
19p-Del	Amp_8q22.3	0.523	1
8p-Del	Amp_4q13.3	0.523	1
Del_9p23	Del_22q13.32	0.523	1
CREBBP	RUNX1	0.524	1
CREBBP	Del_Xp11.3	0.524	1
EP300	PIK3CA	0.524	1
KDM6A	3p-Amp	0.524	1
PIK3CA	11p-Del	0.524	1
PIK3CA	17p-Del	0.524	1
RUNX1	Del_6q27	0.524	1
RUNX1	Del_11q25	0.524	1
TSC1	Del_5q12.1	0.524	1
3q-Amp	Amp_10p14	0.524	1
6q-Del	Amp_12q15	0.524	1
Amp_7p21.1	Del_Xp11.3	0.524	1
Del_11q25	Del_Xp11.3	0.524	1
C3orf70	Amp_17q12	0.525	1
PARD3	Amp_6q21	0.525	1
PKHD1	6q-Del	0.525	1
ZBTB7B	Del_12p13.1	0.525	1
3p-Amp	Amp_17q12	0.525	1
3q-Amp	Amp_16p13.2	0.525	1
Amp_6q21	Del_12p13.1	0.525	1
Del_4q34.2	Del_9p21.3	0.525	1
ARID1A	Amp_17q23.3	0.526	1
ARID1A	Del_3p14.2	0.526	1
ARID1A	Del_22q13.32	0.526	1
CDKN2A	Amp_5p15.33	0.526	1
ELF3	Amp_5p15.33	0.526	1
NF1	19p-Del	0.526	1
RHOB	Amp_5p15.33	0.526	1
Amp_5p15.33	Amp_17q23.3	0.526	1
ARID1A	Amp_11q13.3	0.527	1
ARID1A	Del_12p13.1	0.527	1
ARID1B	Amp_12q15	0.527	1
ARID1B	Amp_13q22.1	0.527	1
HLA-A	Amp_19q13.43	0.527	1
UNC93B1	Amp_19q13.43	0.527	1
4q-Del	Amp_12q15	0.527	1
Amp_5p15.33	Del_11q23.3	0.527	1
CNNM4	NFE2L2	0.528	1
CNNM4	RXRA	0.528	1
CNNM4	Amp_11q22.2	0.528	1
CNOT1	Amp_7p21.1	0.528	1
CREBBP	RBM10	0.528	1
DNAH6	ERCC2	0.528	1
FAM47C	Del_6q27	0.528	1
FAM47C	Del_11q25	0.528	1
NF2	RXRA	0.528	1
NF2	Amp_11q22.2	0.528	1
NFE2L2	SF1	0.528	1
RAI1	Del_11q25	0.528	1
SF1	22q-Del	0.528	1
ARID1A	FOXQ1	0.529	1
ARID1B	Del_11p15.5	0.529	1
ASXL2	ERCC2	0.529	1
ASXL2	9p-Del	0.529	1
CDKN1A	EP300	0.529	1
CNOT1	Amp_1p34.2	0.529	1
CNOT1	Del_5q12.1	0.529	1
CTNNB1	Amp_5p15.33	0.529	1
DNAH6	Del_7q36.3	0.529	1
EP300	11q-Del	0.529	1
EP300	5q-Del	0.529	1
EP300	Amp_11q13.3	0.529	1
FAM47C	FBXW7	0.529	1
GNA13	7q-Amp	0.529	1
HRAS	RPTN	0.529	1
HRAS	19q-Amp	0.529	1
HRAS	Del_7q36.3	0.529	1
MBD1	7q-Amp	0.529	1
MBD1	15q-Del	0.529	1
RAI1	Amp_1p34.2	0.529	1
RPTN	TXNIP	0.529	1
TXNIP	19q-Amp	0.529	1
15q-Del	Del_1q32.1	0.529	1
6q-Del	Amp_4p16.3	0.529	1
ARID1A	Amp_1q21.3	0.53	1
ATM	TSC1	0.53	1
C3orf70	Amp_20q11.21	0.53	1
CUL1	Amp_20q11.21	0.53	1
FOXA1	RB1	0.53	1
FOXQ1	9p-Del	0.53	1
MLL3	11p-Del	0.53	1
MLL3	17p-Del	0.53	1
RB1	THRAP3	0.53	1
CDKN1A	Del_14q24.1	0.531	1
CNNM4	Del_18q23	0.531	1
ERCC2	Amp_17q23.3	0.531	1
NF2	8q-Amp	0.531	1
PLCXD3	Del_14q24.1	0.531	1
RB1	Del_11q25	0.531	1
ARID1A	NF2	0.532	1
ARID1A	SF1	0.532	1
C3orf70	CTNNB1	0.532	1
C3orf70	FOXA1	0.532	1
C3orf70	PTEN	0.532	1
C3orf70	Del_1p36.11	0.532	1
CTNNB1	CUL1	0.532	1
CTNNB1	3p-Amp	0.532	1
CUL1	FOXA1	0.532	1
CUL1	THRAP3	0.532	1
CUL1	1q-Amp	0.532	1
FBXW7	Amp_7p21.1	0.532	1
FOXA1	METTL3	0.532	1
FOXQ1	METTL3	0.532	1
METTL3	PTEN	0.532	1
METTL3	THRAP3	0.532	1
METTL3	1q-Amp	0.532	1
METTL3	Del_1p36.11	0.532	1
PARD3	Del_8p21.3	0.532	1
THRAP3	3p-Amp	0.532	1
1q-Amp	3p-Amp	0.532	1
CSMD3	ERCC2	0.533	1
CTNNB1	Amp_13q22.1	0.533	1
FAT1	Del_1q32.1	0.533	1
FOXA1	Amp_12q15	0.533	1
FOXQ1	Del_16q23.1	0.533	1
MLL	Del_1p36.11	0.533	1
PSIP1	Amp_8p11.21	0.533	1
PSIP1	Del_2q22.1	0.533	1
THRAP3	Amp_12q15	0.533	1
17q-Amp	Del_11q23.3	0.533	1
1q-Amp	Amp_12q15	0.533	1
1q-Amp	Del_6p25.3	0.533	1
20q-Amp	Del_Xq21.33	0.533	1
7q-Amp	Del_2q22.1	0.533	1
4q-Del	Amp_1q23.3	0.533	1
Del_1p36.11	Del_16q23.1	0.533	1
CREBBP	Del_8p23.3	0.534	1
DNAH6	EP300	0.534	1
ELF3	ZNF185	0.534	1
RPTN	Del_5q12.1	0.534	1
TMCO4	Amp_6p22.3	0.534	1
TXNIP	17p-Del	0.534	1
ZNF185	Amp_17q23.3	0.534	1
Amp_6p22.3	Del_Xq21.33	0.534	1
Amp_8p11.21	Amp_10p14	0.534	1
FBXW7	Del_18q23	0.535	1
8q-Amp	Amp_1p34.2	0.535	1
CDKN2A	IDH1	0.536	1
ELF3	RUNX1	0.536	1
HES1	Del_9p23	0.536	1
KRAS	Amp_17q23.3	0.536	1
MLL2	Del_1q32.1	0.536	1
RUNX1	Amp_17q23.3	0.536	1
Amp_6p22.3	Del_11q23.3	0.536	1
Amp_6q21	Amp_8q22.3	0.536	1
Amp_6q21	Del_9p23	0.536	1
Amp_17q23.3	Del_Xp11.3	0.536	1
ERCC2	Del_11p15.5	0.537	1
FGFR3	PKHD1	0.537	1
KRAS	RHOA	0.537	1
KRAS	SHANK1	0.537	1
NFE2L2	Amp_22q12.2	0.537	1
PKHD1	Del_16p13.3	0.537	1
RHOA	RUNX1	0.537	1
RHOA	Del_Xp11.3	0.537	1
RXRA	Amp_22q12.2	0.537	1
ZFP36L1	18q-Del	0.537	1
ZFP36L1	22q-Del	0.537	1
ZFP36L1	Amp_11q22.2	0.537	1
22q-Del	Amp_22q12.2	0.537	1
Amp_17q23.3	Del_9p23	0.537	1
BCL2L1	FGFR3	0.538	1
BCL2L1	STAG2	0.538	1
BCL2L1	Del_16p13.3	0.538	1
EP300	Del_18q23	0.538	1
FBXW7	19p-Del	0.538	1
MLL2	Del_16q23.1	0.538	1
NUDT11	TSC1	0.538	1
RHOA	Amp_11q13.3	0.538	1
SCARF2	Amp_1p34.2	0.538	1
TSC1	UNC93B1	0.538	1
19p-Del	Amp_1p34.2	0.538	1
Amp_1p34.2	Del_2q37.1	0.538	1
ARID1A	PLCXD3	0.539	1
FAT1	Del_11q23.3	0.539	1
PIK3CA	Amp_8p11.23	0.539	1
PIK3CA	Del_11q25	0.539	1
ZFP36L1	Amp_3q26.33	0.539	1
ZFP36L1	Del_10q23.31	0.539	1
16p-Del	Del_9p23	0.539	1
Amp_4p16.3	Del_8p23.3	0.539	1
Amp_11q13.3	Amp_22q12.2	0.539	1
20q-Amp	4p-Del	0.54	1
4p-Del	Del_11q23.3	0.54	1
Amp_4p16.3	Del_2q34	0.54	1
C3orf70	11q-Del	0.541	1
C3orf70	5q-Del	0.541	1
CDKN1A	3p-Amp	0.541	1
CNOT1	ZBTB7B	0.541	1
CNOT1	Amp_6q21	0.541	1
ERBB2	Del_18q23	0.541	1
KDM6A	KRAS	0.541	1
METTL3	Del_19p13.3	0.541	1
MLL	Amp_10p14	0.541	1
RAI1	Amp_6q21	0.541	1
RBM10	Amp_6q21	0.541	1
3p-Amp	Del_19p13.3	0.541	1
CNNM4	7p-Amp	0.542	1
CNNM4	4q-Del	0.542	1
KLF5	NF2	0.542	1
KLF5	SF1	0.542	1
PARD3	14q-Del	0.542	1
SF1	7p-Amp	0.542	1
SF1	4q-Del	0.542	1
Amp_1q23.3	Del_4q22.1	0.542	1
Amp_7p11.2	Del_12p13.1	0.542	1
ATM	Amp_7p21.1	0.543	1
CDKN2A	Amp_6p22.3	0.543	1
CSMD3	RXRA	0.543	1
DNAH6	Del_4q22.1	0.543	1
FGFR3	RXRA	0.543	1
GNA13	Amp_20q11.21	0.543	1
KIAA1267	STAG2	0.543	1
MBD1	Amp_20q11.21	0.543	1
RAI1	Amp_17q23.3	0.543	1
RAI1	Del_3p14.2	0.543	1
STAG2	16p-Del	0.543	1
STAG2	22q-Del	0.543	1
7p-Amp	Del_22q13.32	0.543	1
Amp_8p11.23	Amp_11q22.2	0.543	1
Amp_11q22.2	Del_16p13.3	0.543	1
Del_4q34.2	Del_11q25	0.543	1
PIK3CA	7q-Amp	0.544	1
17q-Amp	Del_8p23.3	0.544	1
Amp_8p11.21	Amp_12q15	0.544	1
Amp_11q13.3	Del_14q24.1	0.544	1
RPTN	Del_13q14.2	0.545	1
SCARF2	Del_9p21.3	0.545	1
17q-Amp	Del_2q22.1	0.545	1
19q-Amp	Del_13q14.2	0.545	1
19p-Del	Del_9p21.3	0.545	1
Amp_8p11.21	Del_1q32.1	0.545	1
Amp_8p11.21	Del_Xq21.33	0.545	1
CTNNB1	20p-Amp	0.546	1
CTNNB1	Del_22q13.32	0.546	1
ELF3	Amp_3q26.33	0.546	1
GNA13	Amp_4p16.3	0.546	1
NF1	RB1	0.546	1
NF1	9p-Del	0.546	1
PTEN	20p-Amp	0.546	1
THRAP3	20p-Amp	0.546	1
THRAP3	Del_22q13.32	0.546	1
TXNIP	8q-Amp	0.546	1
17q-Amp	Amp_4p16.3	0.546	1
1q-Amp	Del_22q13.32	0.546	1
5p-Amp	9p-Del	0.546	1
Amp_4p16.3	Del_Xq21.33	0.546	1
Amp_11q13.3	Amp_17q23.3	0.546	1
CREBBP	EP300	0.547	1
EP300	Del_11q25	0.547	1
ERBB2	15q-Del	0.547	1
FOXQ1	Amp_8q22.3	0.547	1
ZNF185	Del_8p21.3	0.547	1
8q-Amp	11q-Del	0.547	1
8q-Amp	Del_19p13.3	0.547	1
17p-Del	Amp_7p21.1	0.547	1
Amp_4q13.3	Del_8p21.3	0.547	1
ATM	HES1	0.548	1
ATM	Amp_6q21	0.548	1
HES1	Del_4q34.2	0.548	1
HLA-A	3q-Amp	0.548	1
HLA-A	Del_15q13.1	0.548	1
NRAS	10q-Del	0.548	1
NRAS	6q-Del	0.548	1
NUDT11	3q-Amp	0.548	1
NUDT11	Del_15q13.1	0.548	1
UNC93B1	6q-Del	0.548	1
UNC93B1	Del_15q13.1	0.548	1
ZBTB7B	Del_4q34.2	0.548	1
18q-Del	Amp_7p11.2	0.548	1
Amp_10p14	Del_18q23	0.548	1
CDKN1A	Del_2q22.1	0.549	1
FBXW7	Del_9p21.3	0.549	1
KDM6A	Amp_11q13.3	0.549	1
RPTN	18q-Del	0.549	1
RPTN	Del_14q24.1	0.549	1
11q-Del	Amp_8p11.21	0.549	1
18q-Del	Amp_4q13.3	0.549	1
18q-Del	Del_7q36.3	0.549	1
5q-Del	Del_2q22.1	0.549	1
Del_2q22.1	Del_19p13.3	0.549	1
FAT1	Del_9p23	0.55	1
FBXW7	Del_3p14.2	0.55	1
KDM6A	16p-Del	0.55	1
MLL	Amp_16p13.2	0.55	1
MLL2	8q-Amp	0.55	1
PKHD1	Del_16q23.1	0.55	1
SPTAN1	ZNF185	0.55	1
SPTAN1	Del_5q12.1	0.55	1
Amp_7p11.2	Del_5q12.1	0.55	1
ATM	RHOA	0.551	1
BCL2L1	Amp_11q13.3	0.551	1
BCL2L1	Del_10q23.31	0.551	1
HLA-A	Amp_1q21.3	0.551	1
RPTN	19q-Amp	0.551	1
RPTN	Del_7q36.3	0.551	1
SHANK1	Del_4q34.2	0.551	1
19q-Amp	Amp_4q13.3	0.551	1
Amp_17q12	Del_4q22.1	0.551	1
ASXL2	Del_9p21.3	0.552	1
C3orf70	Amp_8p11.23	0.552	1
CSMD3	3p-Amp	0.552	1
CTNNB1	DNAH6	0.552	1
CUL1	FGFR3	0.552	1
DNAH6	FOXA1	0.552	1
DNAH6	PTEN	0.552	1
DNAH6	Del_1p36.11	0.552	1
ERCC2	5q-Del	0.552	1
FGFR3	Del_2q34	0.552	1
FOXA1	TXNIP	0.552	1
FOXQ1	TXNIP	0.552	1
HRAS	PTEN	0.552	1
HRAS	1q-Amp	0.552	1
HRAS	Del_1p36.11	0.552	1
KRAS	MLL3	0.552	1
METTL3	Amp_8p11.23	0.552	1
MLL3	RUNX1	0.552	1
PIK3CA	Amp_6q21	0.552	1
TXNIP	1q-Amp	0.552	1
TXNIP	Del_1p36.11	0.552	1
Amp_8p11.23	Del_2q34	0.552	1
ERCC2	Del_5q12.1	0.553	1
ZFP36L1	Del_8p21.3	0.553	1
FAT1	Amp_4p16.3	0.554	1
MLL3	Del_11p15.5	0.554	1
RHOB	Del_2q34	0.554	1
20p-Amp	Amp_3p25.2	0.554	1
CNOT1	Amp_6p22.3	0.555	1
MLL3	Del_14q24.1	0.555	1
Amp_13q22.1	Del_9p21.3	0.555	1
CNNM4	Del_17p12	0.556	1
CSMD3	Amp_7p11.2	0.556	1
CUL1	Amp_19q13.43	0.556	1
ERBB2	17q-Amp	0.556	1
GNA13	Amp_19q12	0.556	1
SF1	Del_17p12	0.556	1
5p-Amp	Del_7q36.3	0.556	1
4p-Del	Amp_8p11.21	0.556	1
4p-Del	Del_2q22.1	0.556	1
CNNM4	Del_12p13.1	0.557	1
CTNNB1	Del_17p12	0.557	1
CUL1	RUNX1	0.557	1
CUL1	Del_Xp11.3	0.557	1
FAT1	Amp_19q13.43	0.557	1
KDM6A	20q-Amp	0.557	1
KRAS	METTL3	0.557	1
NF2	Del_12p13.1	0.557	1
PARD3	SF1	0.557	1
1q-Amp	Del_17p12	0.557	1
3p-Amp	Del_Xp11.3	0.557	1
3q-Amp	9q-Del	0.557	1
7q-Amp	8p-Del	0.557	1
ARID1A	MLL3	0.558	1
ASXL2	DNAH6	0.558	1
ATM	BCL2L1	0.558	1
HES1	7q-Amp	0.558	1
HES1	15q-Del	0.558	1
HRAS	Amp_17q12	0.558	1
MLL	PARD3	0.558	1
PSIP1	ZBTB7B	0.558	1
PSIP1	Amp_6q21	0.558	1
RHOA	3q-Amp	0.558	1
RHOA	6q-Del	0.558	1
RHOA	Del_15q13.1	0.558	1
SHANK1	3q-Amp	0.558	1
ZBTB7B	15q-Del	0.558	1
ZNF185	Amp_13q22.1	0.558	1
ZNF185	Del_6p25.3	0.558	1
ZNF185	Del_16q23.1	0.558	1
5p-Amp	Del_17p12	0.558	1
7q-Amp	Amp_6q21	0.558	1
Del_12p13.1	Del_16q23.1	0.558	1
ARID1A	17p-Del	0.559	1
ARID1A	Del_5q12.1	0.559	1
CDKN1A	4p-Del	0.559	1
ERBB3	FOXQ1	0.559	1
ERBB3	Del_1p36.11	0.559	1
HLA-A	Amp_16p13.2	0.559	1
KDM6A	Del_19p13.3	0.559	1
KIAA1267	NFE2L2	0.559	1
KIAA1267	RXRA	0.559	1
KIAA1267	22q-Del	0.559	1
KIAA1267	Amp_11q22.2	0.559	1
MLL	8p-Del	0.559	1
NFE2L2	22q-Del	0.559	1
NRAS	PKHD1	0.559	1
NUDT11	PKHD1	0.559	1
NUDT11	Amp_16p13.2	0.559	1
RXRA	Amp_11q22.2	0.559	1
3q-Amp	Del_4q34.2	0.559	1
5p-Amp	18q-Del	0.559	1
5p-Amp	Del_14q24.1	0.559	1
11q-Del	Del_8p21.3	0.559	1
16p-Del	Amp_11q22.2	0.559	1
8p-Del	Amp_12q15	0.559	1
ARID1B	Amp_22q12.2	0.56	1
KLF5	Amp_22q12.2	0.56	1
MLL3	RHOA	0.56	1
MLL3	SHANK1	0.56	1
RUNX1	SPTAN1	0.56	1
ZFP36L1	7p-Amp	0.56	1
Amp_7p11.2	Del_Xp11.3	0.56	1
FOXQ1	Amp_10p14	0.561	1
MLL2	Del_14q24.1	0.561	1
TXNIP	Amp_1q21.3	0.561	1
1q-Amp	Amp_10p14	0.561	1
ASXL2	Del_11q25	0.562	1
CDKN2A	Del_12p13.1	0.562	1
CREBBP	15q-Del	0.562	1
CREBBP	Amp_17q12	0.562	1
FAT1	Amp_8p11.21	0.562	1
PARD3	RHOB	0.562	1
PSIP1	Amp_7p21.1	0.562	1
RHOB	Del_5q12.1	0.562	1
SCARF2	14q-Del	0.562	1
SCARF2	4p-Del	0.562	1
7q-Amp	Del_6q27	0.562	1
14q-Del	19p-Del	0.562	1
15q-Del	Amp_7p21.1	0.562	1
Amp_7p21.1	Amp_17q12	0.562	1
Amp_8p11.21	Del_11q23.3	0.562	1
Amp_17q12	Del_6q27	0.562	1
C3orf70	Amp_3p25.2	0.563	1
CUL1	Amp_3p25.2	0.563	1
ERCC2	Del_7q36.3	0.563	1
IDH1	KIAA1267	0.563	1
IDH1	16p-Del	0.563	1
IDH1	22q-Del	0.563	1
MLL3	SPTAN1	0.563	1
SPTAN1	Del_6q27	0.563	1
GNA13	RHOA	0.564	1
RHOA	Del_1q32.1	0.564	1
RHOA	Del_Xq21.33	0.564	1
SHANK1	17q-Amp	0.564	1
SHANK1	Del_1q32.1	0.564	1
CDKN2A	Amp_17q12	0.565	1
MLL2	19q-Amp	0.565	1
MLL2	Amp_4q13.3	0.565	1
NRAS	Amp_20q11.21	0.565	1
PSIP1	Amp_8q22.3	0.565	1
RHOB	Amp_17q12	0.565	1
MLL2	5p-Amp	0.566	1
ZNF185	Del_22q13.32	0.566	1
CNOT1	Amp_20q11.21	0.567	1
CREBBP	17q-Amp	0.567	1
CREBBP	Amp_1q23.3	0.567	1
FAM47C	14q-Del	0.567	1
FAM47C	Amp_20q11.21	0.567	1
GNA13	Del_11q25	0.567	1
KDM6A	Del_11p15.5	0.567	1
KIAA1267	9p-Del	0.567	1
RAI1	14q-Del	0.567	1
RAI1	4p-Del	0.567	1
RAI1	Amp_20q11.21	0.567	1
RB1	RXRA	0.567	1
RBM10	4p-Del	0.567	1
Del_1q32.1	Del_6q27	0.567	1
ERBB2	11q-Del	0.568	1
ERBB2	5q-Del	0.568	1
ERBB2	Del_19p13.3	0.568	1
FAT1	Del_13q14.2	0.568	1
PLCXD3	Del_19p13.3	0.568	1
11q-Del	Amp_19q12	0.568	1
CSMD3	SF1	0.569	1
HES1	Del_2q34	0.569	1
NF2	Amp_8p11.23	0.569	1
NF2	Del_16p13.3	0.569	1
SF1	Del_16p13.3	0.569	1
Del_9p23	Del_15q13.1	0.569	1
MLL2	Del_16p13.3	0.57	1
NF1	Amp_16p13.2	0.57	1
PKHD1	Del_22q13.32	0.57	1
20p-Amp	Amp_10p14	0.57	1
18q-Del	Amp_13q22.1	0.57	1
Amp_1p34.2	Amp_5p15.33	0.57	1
Amp_12q15	Del_14q24.1	0.57	1
BCL2L1	Del_2q34	0.571	1
CDKN2A	Del_11q23.3	0.571	1
DNAH6	Amp_6p22.3	0.571	1
FBXW7	3q-Amp	0.571	1
FBXW7	6q-Del	0.571	1
KIAA1267	Del_9p21.3	0.571	1
NF1	Amp_6p22.3	0.571	1
PKHD1	Amp_3q26.33	0.571	1
PKHD1	Del_9p21.3	0.571	1
RHOB	Del_11q23.3	0.571	1
3q-Amp	Amp_1p34.2	0.571	1
10q-Del	Amp_1p34.2	0.571	1
Amp_3q26.33	Amp_16p13.2	0.571	1
Del_8p23.3	Del_9p21.3	0.571	1
ATM	Del_4q34.2	0.572	1
ERBB3	Del_11q23.3	0.572	1
FOXA1	8p-Del	0.572	1
METTL3	TSC1	0.572	1
1q-Amp	8p-Del	0.572	1
ARID1B	Amp_8q22.3	0.573	1
CDKN1A	DNAH6	0.573	1
CNNM4	RBM10	0.573	1
CNOT1	SF1	0.573	1
CUL1	Del_9p21.3	0.573	1
DNAH6	5q-Del	0.573	1
ERBB2	4p-Del	0.573	1
ERCC2	SPTAN1	0.573	1
FAM47C	NF2	0.573	1
FAM47C	SF1	0.573	1
HRAS	11q-Del	0.573	1
KIAA1267	Amp_11q13.3	0.573	1
KLF5	Amp_8q22.3	0.573	1
KRAS	MLL	0.573	1
KRAS	Amp_12q15	0.573	1
KRAS	Amp_13q22.1	0.573	1
METTL3	Del_9p21.3	0.573	1
MLL	Del_Xp11.3	0.573	1
RAI1	SF1	0.573	1
RBM10	SF1	0.573	1
RUNX1	Amp_12q15	0.573	1
RXRA	Amp_3q26.33	0.573	1
RXRA	Del_10q23.31	0.573	1
TP53	8q-Amp	0.573	1
TP53	Del_18q23	0.573	1
TXNIP	5q-Del	0.573	1
TXNIP	Del_19p13.3	0.573	1
ZFP36L1	Del_4q22.1	0.573	1
3q-Amp	Del_13q14.2	0.573	1
16p-Del	Amp_3q26.33	0.573	1
4p-Del	Amp_19q12	0.573	1
Amp_11q22.2	Del_10q23.31	0.573	1
Amp_13q22.1	Del_Xp11.3	0.573	1
Del_16q23.1	Del_Xp11.3	0.573	1
CDKN1A	Del_4q22.1	0.574	1
CNOT1	Amp_7p11.2	0.574	1
CSMD3	TP53	0.574	1
CTNNB1	RPTN	0.574	1
CTNNB1	Amp_4q13.3	0.574	1
CTNNB1	Del_7q36.3	0.574	1
ELF3	EP300	0.574	1
EP300	Amp_17q23.3	0.574	1
ERBB3	ZNF185	0.574	1
FOXA1	RPTN	0.574	1
FOXA1	19q-Amp	0.574	1
FOXA1	Del_7q36.3	0.574	1
FOXQ1	Amp_4q13.3	0.574	1
RAI1	SPTAN1	0.574	1
RAI1	Amp_7p11.2	0.574	1
RPTN	Del_1p36.11	0.574	1
THRAP3	19q-Amp	0.574	1
THRAP3	Del_7q36.3	0.574	1
19q-Amp	1q-Amp	0.574	1
19q-Amp	Del_1p36.11	0.574	1
1q-Amp	Del_7q36.3	0.574	1
9q-Del	Amp_8p11.21	0.574	1
Amp_4q13.3	Del_1p36.11	0.574	1
CDKN2A	19p-Del	0.575	1
HES1	Amp_4p16.3	0.575	1
PIK3CA	Del_7q36.3	0.575	1
SHANK1	Amp_16p13.2	0.575	1
ZBTB7B	Amp_4p16.3	0.575	1
Amp_4p16.3	Amp_6q21	0.575	1
CDKN1A	Amp_20q11.21	0.576	1
ELF3	15q-Del	0.576	1
FAT1	Amp_8p11.23	0.576	1
MLL2	ZFP36L1	0.576	1
STAG2	20q-Amp	0.576	1
C3orf70	Amp_3q26.33	0.577	1
CDKN2A	Del_13q14.2	0.577	1
DNAH6	KRAS	0.577	1
DNAH6	RUNX1	0.577	1
DNAH6	Del_Xp11.3	0.577	1
HRAS	KRAS	0.577	1
HRAS	Del_Xp11.3	0.577	1
IDH1	7p-Amp	0.577	1
IDH1	4q-Del	0.577	1
KDM6A	20p-Amp	0.577	1
KRAS	TXNIP	0.577	1
MLL3	Del_10q23.31	0.577	1
NF1	Del_6p25.3	0.577	1
RHOB	Del_13q14.2	0.577	1
TXNIP	Del_Xp11.3	0.577	1
19q-Amp	Del_4q22.1	0.577	1
3p-Amp	Del_10q23.31	0.577	1
ARID1A	CNOT1	0.578	1
ARID1B	STAG2	0.578	1
ARID1B	Amp_8p11.23	0.578	1
BCL2L1	FAT1	0.578	1
BCL2L1	Del_11q23.3	0.578	1
CNOT1	Amp_5p15.33	0.578	1
4q-Del	Amp_8p11.23	0.578	1
9q-Del	Amp_12q15	0.578	1
ELF3	17q-Amp	0.579	1
ELF3	Del_1q32.1	0.579	1
ELF3	Del_Xq21.33	0.579	1
EP300	Amp_4q13.3	0.579	1
GNA13	Amp_17q23.3	0.579	1
IDH1	11p-Del	0.579	1
IDH1	17p-Del	0.579	1
MBD1	Del_3p14.2	0.579	1
MLL2	Del_22q13.32	0.579	1
RPTN	11p-Del	0.579	1
TMCO4	Del_3p14.2	0.579	1
11p-Del	Del_7q36.3	0.579	1
ASXL2	Amp_10p14	0.58	1
ERBB2	Del_8p21.3	0.58	1
FAT1	Del_17p12	0.58	1
HES1	Del_11q23.3	0.58	1
MLL2	Del_8p23.3	0.58	1
8p-Del	Del_9p21.3	0.58	1
ARID1B	KIAA1267	0.581	1
ARID1B	NFE2L2	0.581	1
ARID1B	Amp_11q22.2	0.581	1
ERBB2	8p-Del	0.581	1
ERCC2	TP53	0.581	1
FBXW7	NRAS	0.581	1
FBXW7	NUDT11	0.581	1
FBXW7	UNC93B1	0.581	1
KIAA1267	4q-Del	0.581	1
KLF5	RXRA	0.581	1
KLF5	Amp_11q22.2	0.581	1
MLL3	TSC1	0.581	1
NFE2L2	7p-Amp	0.581	1
NUDT11	Amp_1p34.2	0.581	1
RXRA	7p-Amp	0.581	1
SF1	Del_9p21.3	0.581	1
7p-Amp	22q-Del	0.581	1
4q-Del	Amp_11q22.2	0.581	1
8p-Del	Amp_3p25.2	0.581	1
ASXL2	ELF3	0.582	1
CNOT1	EP300	0.582	1
CNOT1	11p-Del	0.582	1
CNOT1	17p-Del	0.582	1
CSMD3	Del_6p25.3	0.582	1
CTNNB1	Del_5q12.1	0.582	1
DNAH6	Amp_20q11.21	0.582	1
EP300	FAM47C	0.582	1
ERBB2	Amp_4p16.3	0.582	1
FAM47C	17p-Del	0.582	1
FBXW7	RB1	0.582	1
FBXW7	9p-Del	0.582	1
FBXW7	Amp_4p16.3	0.582	1
FOXQ1	9q-Del	0.582	1
KRAS	RB1	0.582	1
PTEN	9q-Del	0.582	1
RAI1	11p-Del	0.582	1
RAI1	17p-Del	0.582	1
RBM10	17p-Del	0.582	1
STAG2	Amp_3p25.2	0.582	1
THRAP3	9q-Del	0.582	1
1q-Amp	Del_5q12.1	0.582	1
C3orf70	17q-Amp	0.583	1
CUL1	GNA13	0.583	1
CUL1	MBD1	0.583	1
CUL1	TMCO4	0.583	1
CUL1	Del_Xq21.33	0.583	1
ERCC2	16p-Del	0.583	1
GNA13	3p-Amp	0.583	1
MBD1	3p-Amp	0.583	1
METTL3	TMCO4	0.583	1
METTL3	17q-Amp	0.583	1
TMCO4	3p-Amp	0.583	1
17q-Amp	3p-Amp	0.583	1
ARID1A	3p-Amp	0.584	1
CDKN1A	CDKN2A	0.584	1
CDKN2A	11q-Del	0.584	1
CDKN2A	Del_19p13.3	0.584	1
RHOB	5q-Del	0.584	1
ZFP36L1	Amp_6p22.3	0.584	1
BCL2L1	Amp_8p11.21	0.585	1
BCL2L1	Del_2q22.1	0.585	1
CTNNB1	Del_14q24.1	0.585	1
ELF3	SPTAN1	0.585	1
FBXW7	Amp_1q23.3	0.585	1
FOXA1	18q-Del	0.585	1
FOXQ1	Del_14q24.1	0.585	1
KLF5	Del_9p23	0.585	1
PTEN	Del_14q24.1	0.585	1
RUNX1	20p-Amp	0.585	1
THRAP3	18q-Del	0.585	1
20p-Amp	Del_Xp11.3	0.585	1
Amp_7p11.2	Del_3p14.2	0.585	1
Amp_8p11.21	Del_2q22.1	0.585	1
CDKN1A	MLL2	0.586	1
CDKN2A	RAI1	0.586	1
CDKN2A	RBM10	0.586	1
CNOT1	RHOB	0.586	1
CSMD3	RB1	0.586	1
EP300	14q-Del	0.586	1
EP300	4p-Del	0.586	1
ERBB2	Del_11q23.3	0.586	1
FAM47C	RHOB	0.586	1
FBXW7	SPTAN1	0.586	1
HLA-A	Amp_3p25.2	0.586	1
RB1	Amp_8p11.23	0.586	1
ZFP36L1	Del_2q34	0.586	1
Amp_1p34.2	Amp_7p11.2	0.586	1
Amp_8q22.3	Del_2q34	0.586	1
CDKN2A	Del_2q22.1	0.587	1
CREBBP	Del_2q34	0.587	1
PIK3CA	20q-Amp	0.587	1
RHOB	Del_2q22.1	0.587	1
ZFP36L1	Del_8p23.3	0.587	1
Amp_12q15	Del_6q27	0.587	1
ATM	RXRA	0.588	1
C3orf70	3q-Amp	0.588	1
C3orf70	6q-Del	0.588	1
C3orf70	Del_15q13.1	0.588	1
CDKN1A	CREBBP	0.588	1
CDKN1A	Del_6q27	0.588	1
CUL1	6q-Del	0.588	1
HRAS	Amp_19q13.43	0.588	1
MLL2	19p-Del	0.588	1
TXNIP	Amp_19q13.43	0.588	1
3p-Amp	10q-Del	0.588	1
3p-Amp	Del_15q13.1	0.588	1
Amp_7p21.1	Del_19p13.3	0.588	1
ATM	Amp_6p22.3	0.589	1
ATM	Amp_16p13.2	0.589	1
CNNM4	15q-Del	0.589	1
CNNM4	Amp_3q26.33	0.589	1
CNNM4	Amp_11q13.3	0.589	1
CNOT1	Amp_12q15	0.589	1
CNOT1	Del_16q23.1	0.589	1
CREBBP	Amp_10p14	0.589	1
ERBB2	Del_22q13.32	0.589	1
FAM47C	MLL	0.589	1
FAM47C	Amp_12q15	0.589	1
FAM47C	Amp_13q22.1	0.589	1
MLL	RAI1	0.589	1
MLL	RBM10	0.589	1
NF2	7q-Amp	0.589	1
NF2	15q-Del	0.589	1
NF2	Amp_3q26.33	0.589	1
PSIP1	SF1	0.589	1
RAI1	Amp_12q15	0.589	1
RAI1	Amp_13q22.1	0.589	1
RBM10	Amp_13q22.1	0.589	1
SF1	7q-Amp	0.589	1
SF1	Del_10q23.31	0.589	1
ARID1A	Del_13q14.2	0.59	1
CREBBP	14q-Del	0.59	1
CREBBP	4p-Del	0.59	1
ERBB3	PARD3	0.59	1
ZNF185	18q-Del	0.59	1
ZNF185	Del_14q24.1	0.59	1
3p-Amp	Del_4q34.2	0.59	1
ASXL2	RPTN	0.591	1
ASXL2	Amp_4q13.3	0.591	1
CDKN2A	5p-Amp	0.591	1
IDH1	Del_12p13.1	0.591	1
RHOB	5p-Amp	0.591	1
SCARF2	Amp_10p14	0.591	1
SHANK1	20q-Amp	0.591	1
ZBTB7B	Del_2q22.1	0.591	1
19q-Amp	Amp_17q12	0.591	1
Amp_1q21.3	Amp_13q22.1	0.591	1
Amp_17q12	Del_7q36.3	0.591	1
ASXL2	ZFP36L1	0.592	1
BCL2L1	ERBB2	0.592	1
RHOA	ZBTB7B	0.592	1
RHOA	Amp_6q21	0.592	1
SHANK1	ZBTB7B	0.592	1
SHANK1	Amp_6q21	0.592	1
19q-Amp	Amp_1q23.3	0.592	1
ARID1A	CSMD3	0.593	1
ARID1A	KRAS	0.593	1
CSMD3	DNAH6	0.593	1
ERBB3	Amp_8p11.21	0.593	1
FGFR3	TXNIP	0.593	1
HRAS	Amp_8p11.23	0.593	1
HRAS	Del_16p13.3	0.593	1
KDM6A	Del_2q22.1	0.593	1
KIAA1267	TP53	0.593	1
PTEN	Del_13q14.2	0.593	1
TP53	22q-Del	0.593	1
TXNIP	Amp_8p11.23	0.593	1
UNC93B1	Del_11p15.5	0.593	1
10q-Del	Amp_8q22.3	0.593	1
Del_1p36.11	Del_13q14.2	0.593	1
ARID1B	Del_14q24.1	0.594	1
KLF5	Del_14q24.1	0.594	1
MLL	Del_2q37.1	0.594	1
RBM10	Del_18q23	0.595	1
SCARF2	Del_8p23.3	0.595	1
ZBTB7B	Amp_6p22.3	0.595	1
CTNNB1	FOXQ1	0.596	1
CTNNB1	Del_1p36.11	0.596	1
FOXA1	FOXQ1	0.596	1
FOXA1	Del_1p36.11	0.596	1
FOXQ1	PTEN	0.596	1
FOXQ1	Del_1p36.11	0.596	1
NF1	20p-Amp	0.596	1
PTEN	THRAP3	0.596	1
PTEN	1q-Amp	0.596	1
1q-Amp	Del_1p36.11	0.596	1
5q-Del	Amp_17q12	0.596	1
ERBB3	KRAS	0.597	1
ERBB3	RUNX1	0.597	1
HES1	Del_8p21.3	0.597	1
KRAS	RPTN	0.597	1
KRAS	Amp_4q13.3	0.597	1
KRAS	Del_7q36.3	0.597	1
MLL	Del_13q14.2	0.597	1
RPTN	RUNX1	0.597	1
RPTN	Del_Xp11.3	0.597	1
RUNX1	19q-Amp	0.597	1
RUNX1	Amp_4q13.3	0.597	1
RUNX1	Del_7q36.3	0.597	1
Amp_6q21	Del_8p21.3	0.597	1
Amp_7p11.2	Del_4q22.1	0.597	1
Amp_13q22.1	Del_13q14.2	0.597	1
Amp_19q13.43	Del_4q22.1	0.597	1
Del_7q36.3	Del_Xp11.3	0.597	1
PLCXD3	3q-Amp	0.598	1
PLCXD3	6q-Del	0.598	1
ATM	SF1	0.599	1
BCL2L1	CREBBP	0.599	1
BCL2L1	Del_6q27	0.599	1
BCL2L1	Del_11q25	0.599	1
CNNM4	Del_4q34.2	0.599	1
ERCC2	1q-Amp	0.599	1
FBXW7	Del_16p13.3	0.599	1
MLL3	Del_8p23.3	0.599	1
SCARF2	8p-Del	0.599	1
SF1	Del_4q34.2	0.599	1
STAG2	Amp_1p34.2	0.599	1
8p-Del	Amp_4p16.3	0.599	1
Amp_8q22.3	Del_19p13.3	0.599	1
CDKN1A	Del_8p23.3	0.6	1
ERCC2	TSC1	0.6	1
KIAA1267	19p-Del	0.6	1
RXRA	19p-Del	0.6	1
SCARF2	22q-Del	0.6	1
SCARF2	Amp_11q22.2	0.6	1
ERBB2	ZBTB7B	0.601	1
ERBB2	Amp_6q21	0.601	1
KDM6A	4q-Del	0.601	1
NF1	Amp_3q26.33	0.601	1
NF1	Del_10q23.31	0.601	1
RB1	20q-Amp	0.601	1
Amp_8p11.23	Del_2q22.1	0.601	1
Amp_19q12	Del_5q12.1	0.601	1
DNAH6	GNA13	0.602	1
DNAH6	MBD1	0.602	1
DNAH6	Del_1q32.1	0.602	1
FAT1	Amp_22q12.2	0.602	1
GNA13	HRAS	0.602	1
HRAS	MBD1	0.602	1
HRAS	TMCO4	0.602	1
HRAS	Del_1q32.1	0.602	1
HRAS	Del_Xq21.33	0.602	1
MBD1	SPTAN1	0.602	1
MBD1	TXNIP	0.602	1
MBD1	Amp_7p11.2	0.602	1
SPTAN1	17q-Amp	0.602	1
SPTAN1	Del_1q32.1	0.602	1
TMCO4	TXNIP	0.602	1
TMCO4	Amp_7p11.2	0.602	1
TXNIP	17q-Amp	0.602	1
ARID1B	KLF5	0.603	1
ARID1B	7p-Amp	0.603	1
ARID1B	4q-Del	0.603	1
CDKN2A	ERBB2	0.603	1
CNNM4	Del_9p23	0.603	1
ELF3	Del_11p15.5	0.603	1
FAM47C	Amp_3p25.2	0.603	1
FOXQ1	5p-Amp	0.603	1
KLF5	7p-Amp	0.603	1
RHOB	Amp_19q13.43	0.603	1
SF1	Del_9p23	0.603	1
TSC1	TXNIP	0.603	1
TSC1	Amp_8p11.21	0.603	1
1q-Amp	5p-Amp	0.603	1
C3orf70	PKHD1	0.604	1
C3orf70	Amp_16p13.2	0.604	1
CUL1	Amp_16p13.2	0.604	1
FBXW7	MLL	0.604	1
FBXW7	Amp_13q22.1	0.604	1
FBXW7	Del_6p25.3	0.604	1
FBXW7	Del_16q23.1	0.604	1
METTL3	PKHD1	0.604	1
NFE2L2	PARD3	0.604	1
NFE2L2	Del_12p13.1	0.604	1
NRAS	4p-Del	0.604	1
PARD3	RXRA	0.604	1
PARD3	16p-Del	0.604	1
PARD3	22q-Del	0.604	1
PIK3CA	Del_17p12	0.604	1
PKHD1	3p-Amp	0.604	1
16p-Del	Del_12p13.1	0.604	1
Amp_1p34.2	Amp_12q15	0.604	1
Amp_1p34.2	Del_16q23.1	0.604	1
Amp_6q21	Amp_20q11.21	0.604	1
ASXL2	Amp_5p15.33	0.605	1
CNOT1	Del_22q13.32	0.605	1
NF2	Amp_4p16.3	0.605	1
RAI1	20p-Amp	0.605	1
SF1	Amp_4p16.3	0.605	1
Amp_5p15.33	Amp_17q12	0.605	1
BCL2L1	Amp_17q23.3	0.606	1
CDKN1A	Del_7q36.3	0.606	1
FAM47C	Amp_22q12.2	0.606	1
KDM6A	ZNF185	0.606	1
RBM10	ZFP36L1	0.606	1
RBM10	Amp_22q12.2	0.606	1
RPTN	11q-Del	0.606	1
RPTN	5q-Del	0.606	1
19q-Amp	11q-Del	0.606	1
19q-Amp	5q-Del	0.606	1
5q-Del	Amp_4q13.3	0.606	1
Amp_4q13.3	Del_19p13.3	0.606	1
CUL1	Del_2q37.1	0.607	1
ELF3	14q-Del	0.607	1
ELF3	4p-Del	0.607	1
ELF3	Del_19p13.3	0.607	1
KLF5	Amp_11q13.3	0.607	1
RB1	4q-Del	0.607	1
SCARF2	9q-Del	0.607	1
SCARF2	Del_5q12.1	0.607	1
17q-Amp	Del_2q37.1	0.607	1
7p-Amp	Amp_3q26.33	0.607	1
11q-Del	Amp_17q23.3	0.607	1
4q-Del	Amp_11q13.3	0.607	1
9q-Del	Del_22q13.32	0.607	1
Amp_11q13.3	Del_8p21.3	0.607	1
Del_2q37.1	Del_Xq21.33	0.607	1
PKHD1	Del_9p23	0.608	1
PLCXD3	Amp_16p13.2	0.608	1
SCARF2	Amp_1q23.3	0.608	1
ZNF185	Del_4q22.1	0.608	1
ARID1A	6q-Del	0.609	1
ARID1A	Del_8p23.3	0.609	1
ARID1B	PIK3CA	0.609	1
CREBBP	8p-Del	0.609	1
CSMD3	Del_9p21.3	0.609	1
ELF3	MLL	0.609	1
FAT1	Del_6q27	0.609	1
FAT1	Del_11q25	0.609	1
KDM6A	MBD1	0.609	1
KDM6A	17q-Amp	0.609	1
20q-Amp	Del_6q27	0.609	1
Amp_12q15	Del_3p14.2	0.609	1
C3orf70	Amp_6q21	0.61	1
CDKN1A	Amp_22q12.2	0.61	1
CUL1	ZBTB7B	0.61	1
ELF3	Amp_4p16.3	0.61	1
HES1	3p-Amp	0.61	1
PIK3CA	Amp_10p14	0.61	1
ZBTB7B	3p-Amp	0.61	1
ZFP36L1	11q-Del	0.61	1
ZFP36L1	5q-Del	0.61	1
3p-Amp	Amp_6q21	0.61	1
5q-Del	Amp_22q12.2	0.61	1
CDKN2A	PSIP1	0.611	1
CDKN2A	15q-Del	0.611	1
FAM47C	Del_17p12	0.611	1
KRAS	Amp_10p14	0.611	1
RAI1	Del_17p12	0.611	1
RBM10	Del_17p12	0.611	1
RHOB	15q-Del	0.611	1
RUNX1	Amp_10p14	0.611	1
20p-Amp	Del_6q27	0.611	1
CREBBP	ZBTB7B	0.612	1
CTNNB1	Del_4q22.1	0.612	1
FOXQ1	Del_4q22.1	0.612	1
FOXQ1	Del_9p23	0.612	1
HES1	Del_6q27	0.612	1
MLL2	ZBTB7B	0.612	1
MLL2	Amp_6q21	0.612	1
MLL3	4p-Del	0.612	1
PTEN	Del_4q22.1	0.612	1
ZBTB7B	Amp_7p21.1	0.612	1
Amp_10p14	Del_19p13.3	0.612	1
CSMD3	Del_12p13.1	0.613	1
GNA13	Amp_13q22.1	0.613	1
MBD1	Amp_12q15	0.613	1
MLL	TMCO4	0.613	1
MLL	17q-Amp	0.613	1
PARD3	Amp_8p11.23	0.613	1
STAG2	Del_12p13.1	0.613	1
TMCO4	Amp_12q15	0.613	1
17q-Amp	Amp_13q22.1	0.613	1
Amp_12q15	Del_1q32.1	0.613	1
Del_1q32.1	Del_6p25.3	0.613	1
Del_12p13.1	Del_16p13.3	0.613	1
ARID1B	SCARF2	0.614	1
ARID1B	19p-Del	0.614	1
FOXA1	TP53	0.614	1
FOXQ1	TP53	0.614	1
SCARF2	4q-Del	0.614	1
3p-Amp	Del_17p12	0.614	1
7p-Amp	19p-Del	0.614	1
19p-Del	4q-Del	0.614	1
9q-Del	Amp_17q12	0.614	1
C3orf70	Del_2q34	0.615	1
CUL1	Del_2q34	0.615	1
EP300	5p-Amp	0.615	1
HLA-A	Del_2q37.1	0.615	1
MLL3	NRAS	0.615	1
MLL3	NUDT11	0.615	1
NUDT11	Del_2q37.1	0.615	1
UNC93B1	Del_2q37.1	0.615	1
5p-Amp	Del_2q22.1	0.615	1
CDKN2A	HLA-A	0.616	1
CDKN2A	NRAS	0.616	1
CDKN2A	NUDT11	0.616	1
ERBB3	KDM6A	0.616	1
HLA-A	RHOB	0.616	1
MLL3	5p-Amp	0.616	1
NRAS	RHOB	0.616	1
NUDT11	RHOB	0.616	1
ZNF185	Amp_17q12	0.616	1
HRAS	Amp_11q13.3	0.617	1
ASXL2	RXRA	0.618	1
ASXL2	Amp_11q22.2	0.618	1
CDKN1A	Amp_8p11.23	0.618	1
CSMD3	5q-Del	0.618	1
CSMD3	Amp_1q21.3	0.618	1
ERBB2	RHOA	0.618	1
HRAS	3q-Amp	0.618	1
MLL	Del_4q22.1	0.618	1
NF1	PLCXD3	0.618	1
PIK3CA	Del_2q22.1	0.618	1
RXRA	Amp_17q12	0.618	1
STAG2	Del_19p13.3	0.618	1
TXNIP	10q-Del	0.618	1
TXNIP	Del_15q13.1	0.618	1
Amp_7p11.2	Del_4q34.2	0.618	1
Amp_11q22.2	Amp_17q12	0.618	1
CTNNB1	Del_Xp11.3	0.619	1
FOXA1	KRAS	0.619	1
FOXA1	RUNX1	0.619	1
FOXA1	Del_Xp11.3	0.619	1
FOXQ1	RUNX1	0.619	1
KRAS	THRAP3	0.619	1
KRAS	Del_1p36.11	0.619	1
PTEN	RUNX1	0.619	1
PTEN	Del_Xp11.3	0.619	1
RUNX1	THRAP3	0.619	1
RUNX1	Del_1p36.11	0.619	1
RUNX1	Del_17p12	0.619	1
THRAP3	Del_Xp11.3	0.619	1
1q-Amp	Del_Xp11.3	0.619	1
BCL2L1	SPTAN1	0.62	1
CDKN2A	17p-Del	0.62	1
CDKN2A	Del_11q25	0.62	1
CREBBP	RHOB	0.62	1
CUL1	NF1	0.62	1
ERBB3	FAM47C	0.62	1
FAT1	Amp_3q26.33	0.62	1
FAT1	Amp_11q13.3	0.62	1
NF2	Amp_8q22.3	0.62	1
RAI1	Del_8p23.3	0.62	1
RPTN	Amp_19q13.43	0.62	1
ZBTB7B	Del_8p23.3	0.62	1
Amp_6q21	Del_8p23.3	0.62	1
ARID1B	Del_4q34.2	0.621	1
ATM	KLF5	0.621	1
CNNM4	RHOA	0.621	1
CNNM4	SHANK1	0.621	1
IDH1	7q-Amp	0.621	1
NF2	SHANK1	0.621	1
RUNX1	8p-Del	0.621	1
SPTAN1	Amp_17q12	0.621	1
5p-Amp	Amp_16p13.2	0.621	1
7q-Amp	11p-Del	0.621	1
7q-Amp	17p-Del	0.621	1
15q-Del	Del_6p25.3	0.621	1
8p-Del	Del_Xp11.3	0.621	1
Amp_8q22.3	Del_Xp11.3	0.621	1
EP300	3q-Amp	0.622	1
EP300	Del_15q13.1	0.622	1
GNA13	RPTN	0.622	1
GNA13	TP53	0.622	1
GNA13	Amp_4q13.3	0.622	1
GNA13	Del_7q36.3	0.622	1
MBD1	19q-Amp	0.622	1
MLL	Amp_3q26.33	0.622	1
MLL	Del_10q23.31	0.622	1
TMCO4	19q-Amp	0.622	1
TP53	Del_1q32.1	0.622	1
UNC93B1	Amp_8q22.3	0.622	1
17q-Amp	Del_7q36.3	0.622	1
19q-Amp	Del_Xq21.33	0.622	1
8p-Del	Amp_11q22.2	0.622	1
Amp_4q13.3	Del_1q32.1	0.622	1
Amp_11q13.3	Del_6p25.3	0.622	1
Amp_11q13.3	Del_16q23.1	0.622	1
Del_1q32.1	Del_7q36.3	0.622	1
Del_7q36.3	Del_Xq21.33	0.622	1
ATM	Del_5q12.1	0.623	1
CDKN2A	TSC1	0.623	1
ELF3	HES1	0.623	1
ELF3	Amp_6q21	0.623	1
ERCC2	10q-Del	0.623	1
FAT1	Del_14q24.1	0.623	1
HES1	Amp_17q23.3	0.623	1
PARD3	Del_14q24.1	0.623	1
RUNX1	Del_14q24.1	0.623	1
STAG2	Amp_1q23.3	0.623	1
TXNIP	Del_11p15.5	0.623	1
5p-Amp	19p-Del	0.623	1
Amp_6q21	Amp_17q23.3	0.623	1
Amp_6q21	Del_3p14.2	0.623	1
Del_14q24.1	Del_Xp11.3	0.623	1
HRAS	Amp_8q22.3	0.624	1
IDH1	Amp_8p11.23	0.624	1
IDH1	Del_16p13.3	0.624	1
Amp_4q13.3	Amp_6p22.3	0.624	1
ARID1B	Del_12p13.1	0.625	1
CDKN1A	ZNF185	0.625	1
CSMD3	Amp_19q12	0.625	1
FOXA1	11p-Del	0.625	1
KLF5	Del_12p13.1	0.625	1
PARD3	4q-Del	0.625	1
PTEN	17p-Del	0.625	1
ZNF185	5q-Del	0.625	1
ZNF185	Del_19p13.3	0.625	1
17q-Amp	20p-Amp	0.625	1
17q-Amp	Del_22q13.32	0.625	1
1q-Amp	11p-Del	0.625	1
20p-Amp	Del_Xq21.33	0.625	1
ASXL2	CTNNB1	0.626	1
ASXL2	FOXA1	0.626	1
ASXL2	FOXQ1	0.626	1
ASXL2	PTEN	0.626	1
CNOT1	NFE2L2	0.626	1
CNOT1	Amp_11q22.2	0.626	1
FAM47C	KIAA1267	0.626	1
FAM47C	16p-Del	0.626	1
FAM47C	22q-Del	0.626	1
FAM47C	Amp_11q22.2	0.626	1
FOXQ1	Amp_17q12	0.626	1
KIAA1267	RBM10	0.626	1
MLL3	Del_2q37.1	0.626	1
NFE2L2	RAI1	0.626	1
PTEN	Amp_17q12	0.626	1
RAI1	16p-Del	0.626	1
RAI1	22q-Del	0.626	1
RBM10	Amp_11q22.2	0.626	1
8q-Amp	Del_2q34	0.626	1
22q-Del	Amp_6p22.3	0.626	1
Amp_11q13.3	Amp_17q12	0.626	1
Amp_17q12	Del_1p36.11	0.626	1
BCL2L1	Del_6p25.3	0.627	1
BCL2L1	Del_16q23.1	0.627	1
FBXW7	Amp_10p14	0.627	1
SCARF2	Del_12p13.1	0.627	1
5p-Amp	Amp_22q12.2	0.627	1
19p-Del	Del_12p13.1	0.627	1
C3orf70	20q-Amp	0.628	1
CNNM4	FAT1	0.628	1
CUL1	20q-Amp	0.628	1
DNAH6	Amp_6q21	0.628	1
HES1	TXNIP	0.628	1
HLA-A	ZFP36L1	0.628	1
HLA-A	Amp_22q12.2	0.628	1
HRAS	ZBTB7B	0.628	1
HRAS	Amp_6q21	0.628	1
MLL2	RXRA	0.628	1
MLL2	22q-Del	0.628	1
MLL3	Del_11q25	0.628	1
NRAS	ZFP36L1	0.628	1
NUDT11	ZFP36L1	0.628	1
NUDT11	Amp_22q12.2	0.628	1
UNC93B1	ZFP36L1	0.628	1
UNC93B1	Amp_22q12.2	0.628	1
20q-Amp	3p-Amp	0.628	1
EP300	Amp_6p22.3	0.629	1
ERCC2	Del_2q34	0.629	1
FBXW7	PLCXD3	0.629	1
PLCXD3	Amp_1p34.2	0.629	1
ZBTB7B	Amp_3p25.2	0.629	1
ZFP36L1	Amp_19q13.43	0.629	1
ATM	HRAS	0.63	1
DNAH6	Del_4q34.2	0.63	1
ZFP36L1	7q-Amp	0.63	1
10q-Del	Amp_8p11.21	0.63	1
ARID1A	Del_11q25	0.631	1
ASXL2	Del_13q14.2	0.631	1
CNNM4	TP53	0.631	1
CREBBP	RHOA	0.631	1
CREBBP	SHANK1	0.631	1
CREBBP	Del_2q22.1	0.631	1
CTNNB1	PIK3CA	0.631	1
FOXA1	PIK3CA	0.631	1
Amp_8p11.21	Del_11q25	0.631	1
CDKN2A	KDM6A	0.632	1
ELF3	FAT1	0.632	1
FBXW7	Amp_11q13.3	0.632	1
FBXW7	Del_10q23.31	0.632	1
FOXA1	MLL2	0.632	1
20p-Amp	Del_3p14.2	0.632	1
Amp_1p34.2	Amp_3q26.33	0.632	1
Amp_17q23.3	Del_11q23.3	0.632	1
ERBB2	ZFP36L1	0.633	1
FAT1	RXRA	0.633	1
FAT1	22q-Del	0.633	1
KIAA1267	Del_11q23.3	0.633	1
NFE2L2	Del_11q23.3	0.633	1
PLCXD3	Amp_1q21.3	0.633	1
RXRA	Del_11q23.3	0.633	1
ARID1A	Del_16q23.1	0.634	1
CSMD3	EP300	0.634	1
CSMD3	Del_9p23	0.634	1
ERBB3	Amp_8p11.23	0.634	1
ERBB3	Del_11q25	0.634	1
PKHD1	TXNIP	0.634	1
STAG2	17p-Del	0.634	1
TXNIP	Amp_16p13.2	0.634	1
ZNF185	Amp_19q13.43	0.634	1
11p-Del	Amp_8p11.23	0.634	1
Amp_20q11.21	Del_7q36.3	0.634	1
ERCC2	Amp_20q11.21	0.635	1
ERCC2	Del_Xp11.3	0.635	1
KIAA1267	9q-Del	0.635	1
NFE2L2	9q-Del	0.635	1
PTEN	8q-Amp	0.635	1
RB1	Del_1q32.1	0.635	1
TSC1	19q-Amp	0.635	1
TSC1	Amp_4q13.3	0.635	1
16p-Del	9q-Del	0.635	1
9q-Del	Amp_11q22.2	0.635	1
CDKN1A	KIAA1267	0.636	1
CDKN1A	NFE2L2	0.636	1
CDKN1A	RXRA	0.636	1
CDKN1A	22q-Del	0.636	1
CDKN2A	Amp_4p16.3	0.636	1
CSMD3	RPTN	0.636	1
CSMD3	Del_7q36.3	0.636	1
FGFR3	Del_7q36.3	0.636	1
KIAA1267	Del_19p13.3	0.636	1
NFE2L2	11q-Del	0.636	1
NRAS	RB1	0.636	1
NRAS	9p-Del	0.636	1
NUDT11	RB1	0.636	1
RHOB	Del_3p14.2	0.636	1
RPTN	STAG2	0.636	1
RPTN	Del_16p13.3	0.636	1
RXRA	11q-Del	0.636	1
STAG2	Amp_4q13.3	0.636	1
STAG2	Del_7q36.3	0.636	1
Amp_11q22.2	Del_19p13.3	0.636	1
ERBB3	17q-Amp	0.637	1
FBXW7	3p-Amp	0.637	1
3p-Amp	Amp_1p34.2	0.637	1
C3orf70	CNNM4	0.638	1
C3orf70	SF1	0.638	1
CNNM4	3p-Amp	0.638	1
CNNM4	Amp_8p11.21	0.638	1
CUL1	SF1	0.638	1
ERCC2	RB1	0.638	1
NF2	3p-Amp	0.638	1
PKHD1	4p-Del	0.638	1
SF1	3p-Amp	0.638	1
ZBTB7B	Del_11p15.5	0.638	1
4p-Del	Amp_16p13.2	0.638	1
Amp_3p25.2	Amp_11q13.3	0.638	1
Amp_6q21	Del_11p15.5	0.638	1
CDKN1A	CTNNB1	0.639	1
CDKN1A	FOXA1	0.639	1
CDKN1A	FOXQ1	0.639	1
CDKN2A	Del_9p23	0.639	1
CTNNB1	11q-Del	0.639	1
KIAA1267	Amp_20q11.21	0.639	1
PLCXD3	Amp_6p22.3	0.639	1
PTEN	5q-Del	0.639	1
PTEN	Del_19p13.3	0.639	1
RXRA	Amp_20q11.21	0.639	1
SCARF2	17p-Del	0.639	1
THRAP3	5q-Del	0.639	1
THRAP3	Del_19p13.3	0.639	1
1q-Amp	11q-Del	0.639	1
1q-Amp	5q-Del	0.639	1
CNOT1	Amp_1q23.3	0.64	1
CREBBP	TSC1	0.64	1
HLA-A	KIAA1267	0.64	1
HLA-A	NFE2L2	0.64	1
HLA-A	RXRA	0.64	1
HLA-A	22q-Del	0.64	1
HLA-A	Amp_11q22.2	0.64	1
KIAA1267	NUDT11	0.64	1
NFE2L2	NRAS	0.64	1
NFE2L2	NUDT11	0.64	1
NFE2L2	UNC93B1	0.64	1
NRAS	16p-Del	0.64	1
NRAS	22q-Del	0.64	1
NUDT11	22q-Del	0.64	1
RB1	3p-Amp	0.64	1
TSC1	Del_11q25	0.64	1
UNC93B1	16p-Del	0.64	1
UNC93B1	22q-Del	0.64	1
UNC93B1	Amp_11q22.2	0.64	1
8q-Amp	Del_9p21.3	0.64	1
11q-Del	Amp_19q13.43	0.64	1
5q-Del	Amp_19q13.43	0.64	1
C3orf70	Del_2q22.1	0.641	1
CNOT1	19p-Del	0.641	1
FAM47C	SCARF2	0.641	1
FAM47C	19p-Del	0.641	1
FGFR3	Del_10q23.31	0.641	1
KRAS	Del_Xp11.3	0.641	1
METTL3	Amp_8p11.21	0.641	1
MLL2	Amp_11q13.3	0.641	1
RAI1	19p-Del	0.641	1
RBM10	19p-Del	0.641	1
RUNX1	Del_Xp11.3	0.641	1
SHANK1	8p-Del	0.641	1
SPTAN1	4p-Del	0.641	1
STAG2	Amp_11q13.3	0.641	1
14q-Del	Amp_7p11.2	0.641	1
Amp_3q26.33	Del_12p13.1	0.641	1
Amp_11q13.3	Del_12p13.1	0.641	1
Amp_12q15	Amp_17q12	0.641	1
Amp_13q22.1	Amp_17q12	0.641	1
Del_13q14.2	Del_Xp11.3	0.641	1
CDKN2A	10q-Del	0.642	1
CTNNB1	GNA13	0.642	1
CTNNB1	MBD1	0.642	1
ELF3	Amp_1q21.3	0.642	1
FAT1	Del_4q34.2	0.642	1
FOXA1	GNA13	0.642	1
FOXA1	MBD1	0.642	1
FOXA1	TMCO4	0.642	1
FOXQ1	GNA13	0.642	1
FOXQ1	TMCO4	0.642	1
FOXQ1	Del_Xq21.33	0.642	1
GNA13	PTEN	0.642	1
GNA13	1q-Amp	0.642	1
GNA13	Del_1p36.11	0.642	1
IDH1	Amp_3q26.33	0.642	1
IDH1	Del_10q23.31	0.642	1
MBD1	PTEN	0.642	1
MBD1	THRAP3	0.642	1
MBD1	Del_1p36.11	0.642	1
PTEN	TMCO4	0.642	1
PTEN	17q-Amp	0.642	1
PTEN	Del_Xq21.33	0.642	1
THRAP3	17q-Amp	0.642	1
THRAP3	Del_1q32.1	0.642	1
TMCO4	Del_1p36.11	0.642	1
17q-Amp	Del_1p36.11	0.642	1
1q-Amp	Del_1q32.1	0.642	1
20q-Amp	Del_4q34.2	0.642	1
8q-Amp	Del_9p23	0.642	1
Del_1p36.11	Del_1q32.1	0.642	1
KDM6A	TSC1	0.643	1
TSC1	ZNF185	0.643	1
Amp_8p11.21	Amp_11q13.3	0.643	1
Amp_8p11.21	Del_10q23.31	0.643	1
ARID1A	11q-Del	0.644	1
ASXL2	Del_4q34.2	0.644	1
CDKN1A	Amp_5p15.33	0.644	1
SHANK1	14q-Del	0.644	1
SHANK1	4p-Del	0.644	1
TP53	19p-Del	0.644	1
5p-Amp	Del_22q13.32	0.644	1
9q-Del	Del_19p13.3	0.644	1
ASXL2	7p-Amp	0.645	1
HES1	Amp_7p11.2	0.645	1
KLF5	Amp_17q12	0.645	1
MLL	Del_8p21.3	0.645	1
SHANK1	Amp_17q23.3	0.645	1
TP53	Del_14q24.1	0.645	1
Amp_1q23.3	Del_9p21.3	0.645	1
KLF5	Amp_10p14	0.646	1
MLL3	Del_8p21.3	0.646	1
PARD3	Del_12p13.1	0.646	1
RB1	Del_12p13.1	0.646	1
Amp_7p11.2	Del_18q23	0.646	1
CNOT1	7p-Amp	0.647	1
ERBB2	Del_17p12	0.647	1
ERCC2	Amp_16p13.2	0.647	1
HES1	Amp_4q13.3	0.647	1
HES1	Del_7q36.3	0.647	1
KDM6A	19p-Del	0.647	1
RBM10	7p-Amp	0.647	1
RBM10	4q-Del	0.647	1
RPTN	ZBTB7B	0.647	1
RPTN	Amp_6q21	0.647	1
SCARF2	8q-Amp	0.647	1
SPTAN1	Del_17p12	0.647	1
ZBTB7B	19q-Amp	0.647	1
ZBTB7B	Amp_4q13.3	0.647	1
19q-Amp	Amp_6q21	0.647	1
20p-Amp	Amp_3q26.33	0.647	1
8q-Amp	19p-Del	0.647	1
9p-Del	Amp_13q22.1	0.647	1
CDKN1A	PIK3CA	0.648	1
ERBB2	SF1	0.648	1
ERBB2	6q-Del	0.648	1
ERBB2	Del_15q13.1	0.648	1
ERCC2	Del_11q23.3	0.648	1
MLL2	Del_13q14.2	0.648	1
NF1	Del_9p23	0.648	1
6q-Del	Amp_19q12	0.648	1
CNOT1	FGFR3	0.649	1
CNOT1	STAG2	0.649	1
CREBBP	ZFP36L1	0.649	1
ERBB2	PIK3CA	0.649	1
FAM47C	Amp_8p11.23	0.649	1
FGFR3	RAI1	0.649	1
KIAA1267	Del_2q22.1	0.649	1
KIAA1267	Del_13q14.2	0.649	1
RPTN	10q-Del	0.649	1
RPTN	6q-Del	0.649	1
RXRA	Del_2q22.1	0.649	1
ZFP36L1	Amp_7p21.1	0.649	1
19q-Amp	10q-Del	0.649	1
19q-Amp	6q-Del	0.649	1
3q-Amp	Del_7q36.3	0.649	1
16p-Del	Amp_8p11.21	0.649	1
22q-Del	Amp_8p11.21	0.649	1
6q-Del	Amp_4q13.3	0.649	1
CREBBP	Del_16p13.3	0.65	1
HRAS	NF1	0.65	1
KIAA1267	7q-Amp	0.65	1
MLL2	Del_6q27	0.65	1
MLL3	RHOB	0.65	1
NFE2L2	7q-Amp	0.65	1
NFE2L2	15q-Del	0.65	1
PLCXD3	14q-Del	0.65	1
PSIP1	RXRA	0.65	1
PSIP1	16p-Del	0.65	1
PSIP1	22q-Del	0.65	1
RXRA	7q-Amp	0.65	1
SF1	Amp_1q21.3	0.65	1
STAG2	Del_6q27	0.65	1
TP53	5q-Del	0.65	1
7q-Amp	16p-Del	0.65	1
15q-Del	Amp_11q22.2	0.65	1
CNOT1	Del_2q37.1	0.651	1
ERBB3	15q-Del	0.651	1
FAM47C	Del_2q37.1	0.651	1
FAT1	Del_18q23	0.651	1
IDH1	Del_4q34.2	0.651	1
7p-Amp	Del_2q34	0.651	1
ASXL2	Del_2q37.1	0.652	1
CNOT1	18q-Del	0.652	1
CNOT1	Del_14q24.1	0.652	1
FAM47C	Del_14q24.1	0.652	1
IDH1	RHOA	0.652	1
IDH1	SHANK1	0.652	1
MLL3	Amp_17q12	0.652	1
PKHD1	Amp_1q23.3	0.652	1
RAI1	Del_14q24.1	0.652	1
SPTAN1	Amp_12q15	0.652	1
SPTAN1	Amp_13q22.1	0.652	1
SPTAN1	Del_6p25.3	0.652	1
SPTAN1	Del_16q23.1	0.652	1
ZNF185	3q-Amp	0.652	1
ZNF185	10q-Del	0.652	1
ZNF185	Del_15q13.1	0.652	1
6q-Del	Del_9p21.3	0.652	1
Amp_7p11.2	Del_6p25.3	0.652	1
ARID1B	HLA-A	0.653	1
ARID1B	NRAS	0.653	1
CREBBP	ERBB2	0.653	1
EP300	Amp_16p13.2	0.653	1
ERBB3	Del_13q14.2	0.653	1
HLA-A	7p-Amp	0.653	1
KLF5	NRAS	0.653	1
KLF5	NUDT11	0.653	1
KLF5	UNC93B1	0.653	1
MLL	Amp_4p16.3	0.653	1
NF1	5p-Amp	0.653	1
NRAS	7p-Amp	0.653	1
NRAS	4q-Del	0.653	1
NUDT11	7p-Amp	0.653	1
THRAP3	Amp_19q13.43	0.653	1
UNC93B1	7p-Amp	0.653	1
Amp_4p16.3	Amp_13q22.1	0.653	1
Amp_19q12	Del_11q25	0.653	1
DNAH6	MLL3	0.654	1
ELF3	Del_2q22.1	0.654	1
EP300	MLL	0.654	1
EP300	Amp_12q15	0.654	1
ERBB2	3p-Amp	0.654	1
HRAS	MLL3	0.654	1
PARD3	PIK3CA	0.654	1
TXNIP	Del_2q34	0.654	1
ZNF185	Del_17p12	0.654	1
11p-Del	Del_16q23.1	0.654	1
17p-Del	Del_16q23.1	0.654	1
NFE2L2	Del_17p12	0.655	1
PSIP1	SCARF2	0.655	1
SCARF2	15q-Del	0.655	1
7q-Amp	19p-Del	0.655	1
17p-Del	Amp_8p11.21	0.655	1
Amp_4p16.3	Amp_22q12.2	0.655	1
Amp_17q23.3	Del_5q12.1	0.655	1
BCL2L1	Del_14q24.1	0.656	1
CNNM4	HRAS	0.656	1
CNNM4	TXNIP	0.656	1
CSMD3	Del_18q23	0.656	1
DNAH6	NF2	0.656	1
DNAH6	SF1	0.656	1
FBXW7	9q-Del	0.656	1
HES1	MLL	0.656	1
HES1	Amp_13q22.1	0.656	1
HRAS	NF2	0.656	1
MLL	ZBTB7B	0.656	1
RB1	Amp_19q12	0.656	1
SF1	TXNIP	0.656	1
ZBTB7B	Amp_13q22.1	0.656	1
ZBTB7B	Del_6p25.3	0.656	1
ZBTB7B	Del_16q23.1	0.656	1
7p-Amp	Amp_1q21.3	0.656	1
Amp_6q21	Amp_12q15	0.656	1
Amp_6q21	Del_6p25.3	0.656	1
Amp_6q21	Del_16q23.1	0.656	1
CSMD3	Amp_20q11.21	0.657	1
ELF3	Del_2q37.1	0.657	1
ELF3	Del_8p21.3	0.657	1
MLL	Amp_8q22.3	0.657	1
PTEN	Amp_1q23.3	0.657	1
Amp_16p13.2	Del_2q22.1	0.657	1
ARID1A	14q-Del	0.658	1
ARID1A	Amp_1q23.3	0.658	1
CNNM4	CREBBP	0.658	1
CNNM4	Amp_6p22.3	0.658	1
NF2	Amp_6p22.3	0.658	1
NF2	Amp_7p21.1	0.658	1
NF2	Del_6q27	0.658	1
NRAS	Amp_10p14	0.658	1
NUDT11	Amp_10p14	0.658	1
RPTN	Amp_11q13.3	0.658	1
SF1	Del_6q27	0.658	1
SPTAN1	Del_2q34	0.658	1
19q-Amp	Amp_11q13.3	0.658	1
7q-Amp	Del_11p15.5	0.658	1
4p-Del	Amp_5p15.33	0.658	1
4p-Del	Del_6p25.3	0.658	1
Amp_3q26.33	Del_7q36.3	0.658	1
Amp_4q13.3	Amp_11q13.3	0.658	1
Amp_11q13.3	Del_7q36.3	0.658	1
Amp_11q13.3	Del_8p23.3	0.658	1
PIK3CA	Del_8p21.3	0.659	1
5p-Amp	Amp_3p25.2	0.659	1
Amp_19q12	Del_9p21.3	0.659	1
ERBB2	Amp_1q23.3	0.66	1
ASXL2	Del_8p21.3	0.661	1
CDKN2A	RHOA	0.661	1
GNA13	Del_14q24.1	0.661	1
KRAS	Amp_17q12	0.661	1
MBD1	Del_14q24.1	0.661	1
PKHD1	ZNF185	0.661	1
PLCXD3	RHOB	0.661	1
RB1	3q-Amp	0.661	1
RHOB	SHANK1	0.661	1
TMCO4	18q-Del	0.661	1
ZNF185	Amp_16p13.2	0.661	1
17q-Amp	18q-Del	0.661	1
18q-Del	Del_Xq21.33	0.661	1
9p-Del	Del_15q13.1	0.661	1
CDKN1A	KLF5	0.662	1
CDKN1A	7p-Amp	0.662	1
CDKN1A	4q-Del	0.662	1
FGFR3	4p-Del	0.662	1
KLF5	11q-Del	0.662	1
KLF5	Del_19p13.3	0.662	1
TSC1	5q-Del	0.662	1
14q-Del	Amp_8p11.23	0.662	1
ASXL2	10q-Del	0.663	1
GNA13	KRAS	0.663	1
GNA13	Amp_10p14	0.663	1
KRAS	MBD1	0.663	1
KRAS	TMCO4	0.663	1
KRAS	Del_Xq21.33	0.663	1
MBD1	Del_Xp11.3	0.663	1
MLL3	Amp_8p11.23	0.663	1
RUNX1	TMCO4	0.663	1
RUNX1	17q-Amp	0.663	1
RUNX1	Del_Xq21.33	0.663	1
17q-Amp	Del_Xp11.3	0.663	1
Del_Xp11.3	Del_Xq21.33	0.663	1
ERBB2	Amp_11q22.2	0.664	1
FGFR3	Del_4q34.2	0.664	1
KDM6A	Del_6q27	0.664	1
KIAA1267	Amp_19q12	0.664	1
PIK3CA	RHOB	0.664	1
PKHD1	19q-Amp	0.664	1
RB1	Del_4q34.2	0.664	1
RHOA	Del_13q14.2	0.664	1
RPTN	Amp_16p13.2	0.664	1
5p-Amp	Del_4q34.2	0.664	1
Amp_4q13.3	Amp_16p13.2	0.664	1
Amp_6q21	Del_2q37.1	0.664	1
Amp_11q22.2	Amp_19q12	0.664	1
Amp_16p13.2	Del_7q36.3	0.664	1
ARID1B	Del_11q23.3	0.665	1
CDKN1A	Amp_13q22.1	0.665	1
CDKN1A	Del_6p25.3	0.665	1
CDKN1A	Del_16q23.1	0.665	1
FAT1	7p-Amp	0.665	1
FBXW7	HRAS	0.665	1
HLA-A	8p-Del	0.665	1
HLA-A	Del_12p13.1	0.665	1
KLF5	20q-Amp	0.665	1
NRAS	PARD3	0.665	1
NRAS	Del_12p13.1	0.665	1
NUDT11	PARD3	0.665	1
NUDT11	Del_12p13.1	0.665	1
PARD3	UNC93B1	0.665	1
ZFP36L1	Amp_17q23.3	0.665	1
ZFP36L1	Del_3p14.2	0.665	1
11q-Del	Amp_13q22.1	0.665	1
4q-Del	Del_11q23.3	0.665	1
5q-Del	Amp_13q22.1	0.665	1
CREBBP	3q-Amp	0.666	1
CREBBP	Del_15q13.1	0.666	1
DNAH6	FAT1	0.666	1
EP300	Del_2q37.1	0.666	1
HRAS	Del_11q23.3	0.666	1
SF1	Amp_20q11.21	0.666	1
ZFP36L1	Del_15q13.1	0.666	1
3q-Amp	Amp_7p21.1	0.666	1
10q-Del	Amp_7p21.1	0.666	1
C3orf70	Del_11q25	0.667	1
CTNNB1	ZBTB7B	0.667	1
CTNNB1	Amp_6q21	0.667	1
CUL1	Del_6q27	0.667	1
ERCC2	Del_2q22.1	0.667	1
FAM47C	PARD3	0.667	1
FOXA1	HES1	0.667	1
FOXA1	TSC1	0.667	1
FOXA1	ZBTB7B	0.667	1
FOXA1	Amp_6q21	0.667	1
HES1	THRAP3	0.667	1
HES1	1q-Amp	0.667	1
HES1	20p-Amp	0.667	1
HES1	Del_1p36.11	0.667	1
HES1	Del_22q13.32	0.667	1
PARD3	RBM10	0.667	1
PTEN	TSC1	0.667	1
PTEN	Amp_6q21	0.667	1
RAI1	Del_12p13.1	0.667	1
THRAP3	TSC1	0.667	1
THRAP3	Amp_6q21	0.667	1
TSC1	1q-Amp	0.667	1
ZBTB7B	1q-Amp	0.667	1
ZBTB7B	Del_1p36.11	0.667	1
1q-Amp	Amp_6q21	0.667	1
20p-Amp	Amp_4p16.3	0.667	1
20p-Amp	Amp_6q21	0.667	1
Amp_6q21	Del_1p36.11	0.667	1
BCL2L1	Del_8p21.3	0.668	1
CNNM4	Amp_17q23.3	0.668	1
CTNNB1	Amp_1q21.3	0.668	1
CUL1	IDH1	0.668	1
ELF3	SF1	0.668	1
IDH1	3p-Amp	0.668	1
NF1	20q-Amp	0.668	1
PKHD1	8q-Amp	0.668	1
SF1	Amp_17q23.3	0.668	1
SF1	Del_3p14.2	0.668	1
8q-Amp	Amp_16p13.2	0.668	1
4q-Del	Amp_5p15.33	0.668	1
ARID1B	7q-Amp	0.669	1
ARID1B	15q-Del	0.669	1
DNAH6	Del_17p12	0.669	1
HRAS	Del_17p12	0.669	1
KLF5	PSIP1	0.669	1
NUDT11	Del_8p21.3	0.669	1
PSIP1	4q-Del	0.669	1
RHOB	SPTAN1	0.669	1
UNC93B1	Del_8p21.3	0.669	1
Amp_19q13.43	Del_9p21.3	0.669	1
ATM	Amp_4q13.3	0.67	1
SCARF2	Amp_4p16.3	0.67	1
TP53	ZFP36L1	0.67	1
3p-Amp	14q-Del	0.67	1
11q-Del	Del_4q34.2	0.67	1
19p-Del	Amp_4p16.3	0.67	1
EP300	KRAS	0.671	1
EP300	RUNX1	0.671	1
PLCXD3	Del_11p15.5	0.671	1
RUNX1	11p-Del	0.671	1
RUNX1	17p-Del	0.671	1
7p-Amp	9q-Del	0.671	1
11p-Del	Del_Xp11.3	0.671	1
BCL2L1	Del_4q22.1	0.672	1
ERBB3	Amp_3q26.33	0.672	1
MLL	Del_18q23	0.672	1
NF1	Del_8p23.3	0.672	1
NFE2L2	TSC1	0.672	1
NUDT11	Del_5q12.1	0.672	1
PLCXD3	ZFP36L1	0.672	1
RHOA	SPTAN1	0.672	1
SHANK1	Amp_7p11.2	0.672	1
17q-Amp	8p-Del	0.672	1
Amp_13q22.1	Del_18q23	0.672	1
Amp_17q12	Del_12p13.1	0.672	1
Del_7q36.3	Del_11p15.5	0.672	1
CUL1	Del_9p23	0.673	1
ERCC2	TMCO4	0.673	1
KIAA1267	Amp_4p16.3	0.673	1
METTL3	Amp_10p14	0.673	1
MLL	Del_16q23.1	0.673	1
Amp_4p16.3	Amp_11q22.2	0.673	1
Del_4q22.1	Del_11q23.3	0.673	1
CDKN1A	RUNX1	0.674	1
CNNM4	Del_7q36.3	0.674	1
KDM6A	Del_10q23.31	0.674	1
KRAS	5q-Del	0.674	1
MLL2	TSC1	0.674	1
MLL2	Amp_13q22.1	0.674	1
NF2	RPTN	0.674	1
NF2	19q-Amp	0.674	1
NF2	Amp_4q13.3	0.674	1
RPTN	SF1	0.674	1
RUNX1	11q-Del	0.674	1
RUNX1	5q-Del	0.674	1
SF1	Amp_4q13.3	0.674	1
SF1	Del_7q36.3	0.674	1
SPTAN1	20p-Amp	0.674	1
11q-Del	Del_Xp11.3	0.674	1
5q-Del	Del_Xp11.3	0.674	1
9q-Del	Amp_19q13.43	0.674	1
Amp_17q23.3	Del_16p13.3	0.674	1
Del_19p13.3	Del_Xp11.3	0.674	1
ERBB2	PKHD1	0.675	1
ERBB2	Del_3p14.2	0.675	1
FAM47C	Amp_3q26.33	0.675	1
NF2	Del_8p21.3	0.675	1
RAI1	Amp_3q26.33	0.675	1
RAI1	Del_10q23.31	0.675	1
METTL3	Amp_1q23.3	0.676	1
RBM10	Del_9p23	0.676	1
9p-Del	Del_22q13.32	0.676	1
Amp_1q23.3	Del_2q34	0.676	1
FOXQ1	Amp_6p22.3	0.677	1
KDM6A	MLL	0.677	1
KDM6A	Del_6p25.3	0.677	1
20q-Amp	Amp_6p22.3	0.677	1
5p-Amp	11q-Del	0.677	1
Amp_6p22.3	Del_1p36.11	0.677	1
CNOT1	HLA-A	0.678	1
CNOT1	NUDT11	0.678	1
CNOT1	UNC93B1	0.678	1
CSMD3	CTNNB1	0.678	1
CSMD3	FOXA1	0.678	1
CSMD3	THRAP3	0.678	1
CTNNB1	Amp_8p11.23	0.678	1
DNAH6	Amp_8p11.21	0.678	1
FAM47C	HLA-A	0.678	1
FAM47C	NRAS	0.678	1
FAM47C	NUDT11	0.678	1
FAT1	IDH1	0.678	1
FBXW7	14q-Del	0.678	1
FGFR3	THRAP3	0.678	1
FOXQ1	STAG2	0.678	1
FOXQ1	Del_16p13.3	0.678	1
HLA-A	RAI1	0.678	1
HRAS	Amp_8p11.21	0.678	1
IDH1	Del_11q23.3	0.678	1
NRAS	RAI1	0.678	1
NRAS	RBM10	0.678	1
PTEN	STAG2	0.678	1
PTEN	Amp_8p11.23	0.678	1
RBM10	UNC93B1	0.678	1
SPTAN1	Del_11q23.3	0.678	1
STAG2	THRAP3	0.678	1
1q-Amp	Amp_8p11.23	0.678	1
Amp_1p34.2	Del_11p15.5	0.678	1
Amp_8p11.23	Del_1p36.11	0.678	1
Amp_12q15	Del_9p21.3	0.678	1
ARID1B	Amp_8p11.21	0.679	1
C3orf70	Del_3p14.2	0.679	1
CREBBP	22q-Del	0.679	1
CREBBP	Amp_11q22.2	0.679	1
CUL1	ELF3	0.679	1
CUL1	Amp_17q23.3	0.679	1
ELF3	3p-Amp	0.679	1
HES1	KDM6A	0.679	1
KIAA1267	Del_11q25	0.679	1
METTL3	Amp_17q23.3	0.679	1
NFE2L2	Del_11q25	0.679	1
NUDT11	Del_13q14.2	0.679	1
RHOA	Amp_22q12.2	0.679	1
3p-Amp	Del_3p14.2	0.679	1
5p-Amp	Del_11p15.5	0.679	1
7p-Amp	Amp_19q13.43	0.679	1
7p-Amp	Del_2q22.1	0.679	1
11p-Del	Amp_8q22.3	0.679	1
16p-Del	Amp_7p21.1	0.679	1
22q-Del	Amp_7p21.1	0.679	1
4q-Del	Amp_8p11.21	0.679	1
4q-Del	Amp_19q13.43	0.679	1
CSMD3	19p-Del	0.68	1
EP300	20p-Amp	0.68	1
EP300	Amp_5p15.33	0.68	1
EP300	Amp_19q12	0.68	1
EP300	Del_22q13.32	0.68	1
KLF5	Amp_20q11.21	0.68	1
MLL2	NRAS	0.68	1
MLL2	NUDT11	0.68	1
MLL2	UNC93B1	0.68	1
SCARF2	STAG2	0.68	1
SCARF2	Amp_8p11.23	0.68	1
SCARF2	Del_16p13.3	0.68	1
17p-Del	Amp_5p15.33	0.68	1
Amp_1q23.3	Amp_7p11.2	0.68	1
ASXL2	17p-Del	0.681	1
CREBBP	Del_14q24.1	0.681	1
CTNNB1	3q-Amp	0.681	1
CTNNB1	6q-Del	0.681	1
EP300	Amp_17q12	0.681	1
FOXA1	3q-Amp	0.681	1
MBD1	Del_5q12.1	0.681	1
MLL2	Amp_5p15.33	0.681	1
PSIP1	18q-Del	0.681	1
THRAP3	3q-Amp	0.681	1
THRAP3	10q-Del	0.681	1
THRAP3	6q-Del	0.681	1
17q-Amp	Del_5q12.1	0.681	1
1q-Amp	3q-Amp	0.681	1
1q-Amp	Del_15q13.1	0.681	1
3q-Amp	Del_1p36.11	0.681	1
Del_1q32.1	Del_5q12.1	0.681	1
BCL2L1	Del_8p23.3	0.682	1
FBXW7	Del_8p21.3	0.682	1
GNA13	Del_17p12	0.682	1
Amp_1p34.2	Del_8p21.3	0.682	1
Amp_12q15	Del_2q34	0.682	1
C3orf70	8p-Del	0.683	1
CDKN1A	10q-Del	0.683	1
ELF3	6q-Del	0.683	1
EP300	NF1	0.683	1
KIAA1267	PLCXD3	0.683	1
NFE2L2	PLCXD3	0.683	1
PARD3	Del_2q34	0.683	1
PLCXD3	RXRA	0.683	1
PLCXD3	22q-Del	0.683	1
PLCXD3	Amp_11q22.2	0.683	1
RB1	Amp_7p21.1	0.683	1
10q-Del	Amp_17q23.3	0.683	1
Amp_10p14	Del_12p13.1	0.683	1
ATM	Del_11p15.5	0.684	1
CSMD3	PSIP1	0.684	1
KDM6A	11p-Del	0.684	1
KDM6A	6q-Del	0.684	1
KRAS	Del_8p21.3	0.684	1
MLL3	PIK3CA	0.684	1
PSIP1	Del_16p13.3	0.684	1
RHOA	19p-Del	0.684	1
RUNX1	Del_8p21.3	0.684	1
ZFP36L1	Amp_16p13.2	0.684	1
20p-Amp	11q-Del	0.684	1
7p-Amp	Del_13q14.2	0.684	1
7q-Amp	Del_16p13.3	0.684	1
Del_8p21.3	Del_Xp11.3	0.684	1
GNA13	17q-Amp	0.685	1
GNA13	Del_1q32.1	0.685	1
GNA13	Del_4q22.1	0.685	1
HRAS	IDH1	0.685	1
IDH1	TXNIP	0.685	1
MBD1	17q-Amp	0.685	1
MBD1	Del_1q32.1	0.685	1
MBD1	Del_Xq21.33	0.685	1
RHOB	Del_16q23.1	0.685	1
SHANK1	Amp_12q15	0.685	1
SHANK1	Amp_13q22.1	0.685	1
TMCO4	17q-Amp	0.685	1
TMCO4	Del_1q32.1	0.685	1
17q-Amp	Del_4q22.1	0.685	1
Amp_3q26.33	Amp_11q13.3	0.685	1
Amp_17q12	Del_9p21.3	0.685	1
Del_1q32.1	Del_Xq21.33	0.685	1
FAM47C	RB1	0.686	1
FGFR3	Del_14q24.1	0.686	1
FOXA1	Amp_20q11.21	0.686	1
MLL3	Del_11q23.3	0.686	1
SCARF2	Amp_5p15.33	0.686	1
UNC93B1	Del_8p23.3	0.686	1
Amp_8p11.23	Del_14q24.1	0.686	1
Amp_20q11.21	Del_1p36.11	0.686	1
BCL2L1	CDKN1A	0.687	1
BCL2L1	Del_19p13.3	0.687	1
CUL1	RHOB	0.687	1
HES1	KRAS	0.687	1
HES1	Del_Xp11.3	0.687	1
KRAS	PIK3CA	0.687	1
KRAS	ZBTB7B	0.687	1
KRAS	Amp_6q21	0.687	1
RAI1	Amp_8q22.3	0.687	1
RUNX1	ZBTB7B	0.687	1
RUNX1	Amp_19q13.43	0.687	1
UNC93B1	5p-Amp	0.687	1
22q-Del	Amp_8q22.3	0.687	1
9q-Del	Del_8p21.3	0.687	1
Amp_11q22.2	Del_11p15.5	0.687	1
ATM	CNOT1	0.688	1
CNNM4	SPTAN1	0.688	1
CNOT1	FAM47C	0.688	1
CNOT1	RAI1	0.688	1
EP300	KIAA1267	0.688	1
EP300	NFE2L2	0.688	1
MLL	Del_8p23.3	0.688	1
NF2	SPTAN1	0.688	1
PARD3	5q-Del	0.688	1
SF1	Amp_7p11.2	0.688	1
11p-Del	Amp_11q22.2	0.688	1
14q-Del	Amp_8q22.3	0.688	1
Amp_5p15.33	Del_4q34.2	0.688	1
ARID1B	Del_8p23.3	0.689	1
HES1	9p-Del	0.689	1
MLL	Amp_19q13.43	0.689	1
PARD3	PSIP1	0.689	1
PKHD1	Del_17p12	0.689	1
PSIP1	Del_12p13.1	0.689	1
RB1	RHOB	0.689	1
RB1	Amp_6q21	0.689	1
TP53	20q-Amp	0.689	1
CREBBP	Del_10q23.31	0.69	1
CSMD3	Del_5q12.1	0.69	1
FGFR3	Del_5q12.1	0.69	1
KIAA1267	10q-Del	0.69	1
NF1	Del_4q22.1	0.69	1
NFE2L2	6q-Del	0.69	1
RPTN	Amp_8q22.3	0.69	1
RXRA	10q-Del	0.69	1
STAG2	Del_5q12.1	0.69	1
3q-Amp	16p-Del	0.69	1
10q-Del	Amp_11q22.2	0.69	1
Amp_3p25.2	Amp_4p16.3	0.69	1
Amp_3q26.33	Amp_7p21.1	0.69	1
Amp_11q22.2	Del_15q13.1	0.69	1
Amp_19q13.43	Del_13q14.2	0.69	1
Del_1q32.1	Del_13q14.2	0.69	1
ATM	ERBB3	0.691	1
ERBB2	TP53	0.691	1
HLA-A	PSIP1	0.691	1
HLA-A	7q-Amp	0.691	1
NF1	Amp_5p15.33	0.691	1
NRAS	PSIP1	0.691	1
NRAS	7q-Amp	0.691	1
NUDT11	PSIP1	0.691	1
NUDT11	7q-Amp	0.691	1
PKHD1	Del_6q27	0.691	1
UNC93B1	7q-Amp	0.691	1
UNC93B1	15q-Del	0.691	1
4p-Del	Amp_11q13.3	0.691	1
CDKN2A	STAG2	0.692	1
CDKN2A	Amp_8p11.23	0.692	1
CDKN2A	Del_16p13.3	0.692	1
CNNM4	FOXA1	0.692	1
CNNM4	THRAP3	0.692	1
CNNM4	1q-Amp	0.692	1
CNNM4	Del_1p36.11	0.692	1
CTNNB1	NF2	0.692	1
DNAH6	Del_8p21.3	0.692	1
ERBB3	14q-Del	0.692	1
FGFR3	RHOB	0.692	1
FOXA1	NF2	0.692	1
FOXA1	SF1	0.692	1
FOXQ1	NF2	0.692	1
FOXQ1	SF1	0.692	1
KLF5	Amp_4p16.3	0.692	1
NF2	PTEN	0.692	1
NF2	1q-Amp	0.692	1
NF2	Del_1p36.11	0.692	1
PIK3CA	3p-Amp	0.692	1
SF1	THRAP3	0.692	1
SF1	Del_1p36.11	0.692	1
TXNIP	Del_8p21.3	0.692	1
19q-Amp	Del_2q34	0.692	1
7q-Amp	Del_2q37.1	0.692	1
4q-Del	Amp_4p16.3	0.692	1
Del_11p15.5	Del_16q23.1	0.692	1
PKHD1	RB1	0.693	1
ELF3	22q-Del	0.694	1
ELF3	Amp_11q22.2	0.694	1
ERBB2	KLF5	0.694	1
ERBB2	7p-Amp	0.694	1
FBXW7	RPTN	0.694	1
FBXW7	Amp_4q13.3	0.694	1
KLF5	PLCXD3	0.694	1
NFE2L2	Amp_17q23.3	0.694	1
PLCXD3	7p-Amp	0.694	1
RXRA	Del_3p14.2	0.694	1
19q-Amp	Amp_1p34.2	0.694	1
20p-Amp	Del_16q23.1	0.694	1
3p-Amp	9q-Del	0.694	1
7p-Amp	Amp_19q12	0.694	1
7q-Amp	Amp_1q23.3	0.694	1
16p-Del	Del_3p14.2	0.694	1
22q-Del	Amp_17q23.3	0.694	1
BCL2L1	Amp_19q13.43	0.695	1
CNNM4	Del_8p23.3	0.695	1
FAT1	FBXW7	0.695	1
FOXA1	PKHD1	0.695	1
FOXA1	Amp_16p13.2	0.695	1
FOXQ1	PKHD1	0.695	1
FOXQ1	Amp_16p13.2	0.695	1
NF2	Del_8p23.3	0.695	1
PKHD1	PTEN	0.695	1
PKHD1	1q-Amp	0.695	1
PKHD1	Del_1p36.11	0.695	1
PTEN	Amp_16p13.2	0.695	1
Amp_1q23.3	Del_6q27	0.695	1
Amp_16p13.2	Del_1p36.11	0.695	1
ARID1A	Del_11p15.5	0.696	1
ELF3	Del_11q25	0.696	1
ERCC2	PSIP1	0.696	1
IDH1	Amp_19q12	0.696	1
MBD1	Amp_8q22.3	0.696	1
SCARF2	Amp_3q26.33	0.696	1
SCARF2	Del_10q23.31	0.696	1
TMCO4	Amp_8q22.3	0.696	1
ZFP36L1	Amp_7p11.2	0.696	1
19p-Del	Amp_11q13.3	0.696	1
Amp_8q22.3	Del_Xq21.33	0.696	1
ASXL2	17q-Amp	0.697	1
ASXL2	Del_Xq21.33	0.697	1
DNAH6	14q-Del	0.697	1
HLA-A	Amp_1q23.3	0.697	1
HRAS	4p-Del	0.697	1
PIK3CA	ZNF185	0.697	1
RPTN	Amp_5p15.33	0.697	1
RXRA	SHANK1	0.697	1
SF1	Del_11p15.5	0.697	1
SHANK1	16p-Del	0.697	1
TP53	3p-Amp	0.697	1
TXNIP	4p-Del	0.697	1
20p-Amp	Del_18q23	0.697	1
20q-Amp	Amp_17q12	0.697	1
5p-Amp	4q-Del	0.697	1
Amp_17q12	Del_11q23.3	0.697	1
Amp_17q12	Del_18q23	0.697	1
Amp_19q13.43	Del_4q34.2	0.697	1
EP300	RHOA	0.698	1
MLL	SF1	0.698	1
NF2	Amp_13q22.1	0.698	1
NF2	Del_6p25.3	0.698	1
PIK3CA	RAI1	0.698	1
RHOA	17p-Del	0.698	1
SF1	Amp_13q22.1	0.698	1
SF1	Del_6p25.3	0.698	1
SPTAN1	Del_2q22.1	0.698	1
9p-Del	Amp_17q12	0.698	1
Amp_3p25.2	Del_6q27	0.698	1
Amp_3p25.2	Del_11q25	0.698	1
Amp_10p14	Amp_11q13.3	0.698	1
ASXL2	CNOT1	0.699	1
ASXL2	RBM10	0.699	1
C3orf70	SCARF2	0.699	1
C3orf70	19p-Del	0.699	1
CTNNB1	Amp_11q13.3	0.699	1
CUL1	SCARF2	0.699	1
CUL1	19p-Del	0.699	1
FOXQ1	Del_10q23.31	0.699	1
KRAS	MLL2	0.699	1
METTL3	19p-Del	0.699	1
MLL2	Del_2q22.1	0.699	1
RAI1	Amp_17q12	0.699	1
SCARF2	3p-Amp	0.699	1
SHANK1	20p-Amp	0.699	1
SHANK1	Del_22q13.32	0.699	1
THRAP3	Amp_11q13.3	0.699	1
ZNF185	14q-Del	0.699	1
ZNF185	4p-Del	0.699	1
1q-Amp	Amp_3q26.33	0.699	1
3p-Amp	19p-Del	0.699	1
ARID1B	Del_17p12	0.7	1
ASXL2	Del_8p23.3	0.7	1
ELF3	Del_14q24.1	0.7	1
FBXW7	RHOB	0.7	1
HES1	18q-Del	0.7	1
KRAS	TSC1	0.7	1
MBD1	5p-Amp	0.7	1
RUNX1	TSC1	0.7	1
TP53	20p-Amp	0.7	1
17q-Amp	5p-Amp	0.7	1
5p-Amp	Del_Xq21.33	0.7	1
18q-Del	Amp_6q21	0.7	1
18q-Del	Amp_17q23.3	0.7	1
ASXL2	Amp_20q11.21	0.701	1
CDKN2A	Del_22q13.32	0.701	1
CNOT1	KDM6A	0.701	1
ELF3	Del_8p23.3	0.701	1
EP300	HLA-A	0.701	1
EP300	NRAS	0.701	1
EP300	NUDT11	0.701	1
EP300	UNC93B1	0.701	1
FAM47C	KDM6A	0.701	1
FAT1	Del_6p25.3	0.701	1
HLA-A	11p-Del	0.701	1
IDH1	19q-Amp	0.701	1
IDH1	Del_7q36.3	0.701	1
KDM6A	RBM10	0.701	1
MLL3	19q-Amp	0.701	1
NRAS	17p-Del	0.701	1
NUDT11	17p-Del	0.701	1
UNC93B1	11p-Del	0.701	1
19q-Amp	Del_2q37.1	0.701	1
20q-Amp	Amp_13q22.1	0.701	1
8q-Amp	Del_10q23.31	0.701	1
Amp_17q23.3	Del_8p23.3	0.701	1
BCL2L1	TSC1	0.702	1
CDKN1A	Del_8p21.3	0.702	1
CREBBP	TXNIP	0.702	1
CSMD3	3q-Amp	0.702	1
DNAH6	Amp_7p21.1	0.702	1
DNAH6	Del_11q25	0.702	1
KIAA1267	8q-Amp	0.702	1
TXNIP	Amp_7p21.1	0.702	1
Amp_10p14	Del_11p15.5	0.702	1
ERBB3	Del_9p23	0.703	1
FAT1	19q-Amp	0.703	1
NF1	ZFP36L1	0.703	1
NF1	Amp_22q12.2	0.703	1
PIK3CA	Amp_6p22.3	0.703	1
19q-Amp	20q-Amp	0.703	1
19q-Amp	Del_11q23.3	0.703	1
10q-Del	Amp_19q13.43	0.703	1
Del_7q36.3	Del_11q23.3	0.703	1
ATM	19p-Del	0.704	1
CUL1	ZFP36L1	0.704	1
EP300	Del_6q27	0.704	1
ERBB3	9p-Del	0.704	1
FBXW7	MLL2	0.704	1
NRAS	Amp_4p16.3	0.704	1
NUDT11	Amp_4p16.3	0.704	1
PARD3	Amp_19q13.43	0.704	1
PIK3CA	ZFP36L1	0.704	1
UNC93B1	Amp_4p16.3	0.704	1
19p-Del	Del_4q34.2	0.704	1
CDKN1A	Amp_1q21.3	0.705	1
CDKN1A	Amp_16p13.2	0.705	1
CREBBP	IDH1	0.705	1
EP300	Del_5q12.1	0.705	1
FAT1	20q-Amp	0.705	1
IDH1	Amp_7p21.1	0.705	1
IDH1	Del_11q25	0.705	1
METTL3	SPTAN1	0.705	1
PARD3	PLCXD3	0.705	1
SCARF2	Del_17p12	0.705	1
20p-Amp	Del_2q34	0.705	1
5p-Amp	Amp_19q13.43	0.705	1
11q-Del	Amp_16p13.2	0.705	1
19p-Del	Del_17p12	0.705	1
Amp_5p15.33	Del_13q14.2	0.705	1
Amp_10p14	Del_15q13.1	0.705	1
ARID1A	KDM6A	0.706	1
CTNNB1	KDM6A	0.706	1
FOXQ1	KDM6A	0.706	1
RUNX1	Del_8p23.3	0.706	1
Del_8p23.3	Del_Xp11.3	0.706	1
GNA13	HES1	0.707	1
GNA13	ZBTB7B	0.707	1
GNA13	Amp_6q21	0.707	1
HES1	TMCO4	0.707	1
HES1	Del_1q32.1	0.707	1
MBD1	Amp_6q21	0.707	1
PKHD1	RXRA	0.707	1
PKHD1	Amp_11q22.2	0.707	1
RPTN	TP53	0.707	1
TMCO4	ZBTB7B	0.707	1
TMCO4	Amp_6q21	0.707	1
ZBTB7B	17q-Amp	0.707	1
ZBTB7B	Del_1q32.1	0.707	1
16p-Del	Amp_16p13.2	0.707	1
Amp_6q21	Del_1q32.1	0.707	1
Amp_6q21	Del_Xq21.33	0.707	1
Amp_11q22.2	Amp_16p13.2	0.707	1
Del_6q27	Del_9p21.3	0.707	1
ASXL2	NF1	0.708	1
CDKN1A	17p-Del	0.708	1
CREBBP	KLF5	0.708	1
CREBBP	4q-Del	0.708	1
EP300	Del_19p13.3	0.708	1
NF1	Amp_17q12	0.708	1
NRAS	8q-Amp	0.708	1
NUDT11	8q-Amp	0.708	1
RHOB	ZNF185	0.708	1
ARID1A	8q-Amp	0.709	1
CDKN1A	MBD1	0.709	1
CDKN1A	TMCO4	0.709	1
CDKN1A	Del_1q32.1	0.709	1
CTNNB1	NF1	0.709	1
DNAH6	MLL2	0.709	1
ERBB2	Del_4q22.1	0.709	1
FAM47C	PSIP1	0.709	1
FOXA1	NF1	0.709	1
FOXQ1	NF1	0.709	1
GNA13	11q-Del	0.709	1
MBD1	Del_19p13.3	0.709	1
MLL2	TXNIP	0.709	1
NF1	1q-Amp	0.709	1
NF2	Del_22q13.32	0.709	1
PSIP1	Amp_3q26.33	0.709	1
RBM10	7q-Amp	0.709	1
SF1	Amp_1q23.3	0.709	1
SF1	Del_22q13.32	0.709	1
17q-Amp	11q-Del	0.709	1
17q-Amp	5q-Del	0.709	1
17q-Amp	Del_19p13.3	0.709	1
7p-Amp	Amp_1q23.3	0.709	1
7q-Amp	Amp_11q13.3	0.709	1
7q-Amp	Del_10q23.31	0.709	1
5q-Del	Del_1q32.1	0.709	1
Amp_5p15.33	Del_18q23	0.709	1
Amp_6p22.3	Del_12p13.1	0.709	1
Amp_19q12	Del_4q22.1	0.709	1
ATM	FOXA1	0.71	1
ATM	PTEN	0.71	1
BCL2L1	3q-Amp	0.71	1
BCL2L1	10q-Del	0.71	1
BCL2L1	6q-Del	0.71	1
CTNNB1	Del_4q34.2	0.71	1
PARD3	Amp_8p11.21	0.71	1
STAG2	Del_13q14.2	0.71	1
CNNM4	RUNX1	0.711	1
KRAS	NF2	0.711	1
NF2	RUNX1	0.711	1
NF2	Del_Xp11.3	0.711	1
PARD3	Amp_4p16.3	0.711	1
SF1	Del_Xp11.3	0.711	1
ZFP36L1	Amp_13q22.1	0.711	1
5p-Amp	Del_2q34	0.711	1
CDKN2A	Amp_1q21.3	0.712	1
ERBB3	SHANK1	0.712	1
SPTAN1	Del_2q37.1	0.712	1
Amp_3p25.2	Del_1p36.11	0.712	1
Amp_8q22.3	Del_9p23	0.712	1
ARID1A	PARD3	0.713	1
CDKN2A	DNAH6	0.713	1
CDKN2A	HRAS	0.713	1
CSMD3	Amp_3p25.2	0.713	1
CSMD3	Amp_5p15.33	0.713	1
EP300	FBXW7	0.713	1
KRAS	3q-Amp	0.713	1
KRAS	10q-Del	0.713	1
MLL3	Amp_11q13.3	0.713	1
MLL3	Del_2q22.1	0.713	1
RHOB	TXNIP	0.713	1
RUNX1	10q-Del	0.713	1
3q-Amp	7p-Amp	0.713	1
3q-Amp	4q-Del	0.713	1
7p-Amp	10q-Del	0.713	1
7p-Amp	6q-Del	0.713	1
7p-Amp	Del_15q13.1	0.713	1
11p-Del	Amp_1p34.2	0.713	1
Amp_8p11.21	Del_2q37.1	0.713	1
CDKN1A	CNOT1	0.714	1
CDKN1A	RBM10	0.714	1
CNOT1	Del_2q34	0.714	1
DNAH6	19p-Del	0.714	1
HES1	Amp_10p14	0.714	1
HRAS	SCARF2	0.714	1
HRAS	19p-Del	0.714	1
HRAS	Del_3p14.2	0.714	1
RAI1	11q-Del	0.714	1
RAI1	Del_19p13.3	0.714	1
SCARF2	TXNIP	0.714	1
TXNIP	19p-Del	0.714	1
ASXL2	Del_2q22.1	0.715	1
DNAH6	Amp_10p14	0.715	1
ERBB3	MLL	0.715	1
IDH1	Amp_1q21.3	0.715	1
IDH1	Del_3p14.2	0.715	1
RHOA	7p-Amp	0.715	1
SHANK1	7p-Amp	0.715	1
TP53	Amp_19q13.43	0.715	1
ELF3	Amp_17q23.3	0.716	1
Amp_1q23.3	Amp_13q22.1	0.716	1
Del_11q23.3	Del_13q14.2	0.716	1
CDKN2A	ERBB3	0.717	1
CNOT1	PLCXD3	0.717	1
CUL1	Amp_13q22.1	0.717	1
ERCC2	Del_17p12	0.717	1
METTL3	MLL	0.717	1
METTL3	Amp_13q22.1	0.717	1
PLCXD3	RAI1	0.717	1
PLCXD3	RBM10	0.717	1
CTNNB1	IDH1	0.718	1
EP300	TMCO4	0.718	1
EP300	17q-Amp	0.718	1
FOXA1	IDH1	0.718	1
FOXQ1	IDH1	0.718	1
GNA13	17p-Del	0.718	1
HLA-A	RHOA	0.718	1
IDH1	PTEN	0.718	1
IDH1	Del_1p36.11	0.718	1
MLL3	Amp_1p34.2	0.718	1
NRAS	RHOA	0.718	1
NRAS	SHANK1	0.718	1
NUDT11	RHOA	0.718	1
NUDT11	SHANK1	0.718	1
PIK3CA	TSC1	0.718	1
RHOA	UNC93B1	0.718	1
SPTAN1	10q-Del	0.718	1
SPTAN1	6q-Del	0.718	1
SPTAN1	Amp_19q12	0.718	1
ZNF185	Amp_22q12.2	0.718	1
17q-Amp	11p-Del	0.718	1
6q-Del	Amp_7p11.2	0.718	1
CDKN1A	Amp_6p22.3	0.719	1
MLL2	Amp_4p16.3	0.719	1
8q-Amp	Amp_1q23.3	0.719	1
5q-Del	Amp_6p22.3	0.719	1
Del_12p13.1	Del_13q14.2	0.719	1
ASXL2	Del_14q24.1	0.72	1
CNNM4	Del_2q37.1	0.72	1
FGFR3	Del_Xp11.3	0.72	1
KRAS	Amp_8p11.23	0.72	1
MLL3	NF2	0.72	1
NF2	Del_2q37.1	0.72	1
RHOB	Del_10q23.31	0.72	1
TP53	Del_15q13.1	0.72	1
Amp_7p11.2	Del_16p13.3	0.72	1
Amp_13q22.1	Del_2q22.1	0.72	1
Amp_17q12	Del_14q24.1	0.72	1
ATM	15q-Del	0.721	1
CUL1	Amp_11q22.2	0.721	1
FOXA1	Del_11p15.5	0.721	1
FOXQ1	Del_11p15.5	0.721	1
GNA13	Amp_19q13.43	0.721	1
MBD1	Amp_19q13.43	0.721	1
NFE2L2	3p-Amp	0.721	1
SCARF2	Del_2q34	0.721	1
TMCO4	Amp_19q13.43	0.721	1
3p-Amp	16p-Del	0.721	1
7q-Amp	Del_9p23	0.721	1
15q-Del	Del_9p23	0.721	1
18q-Del	Amp_11q13.3	0.721	1
9p-Del	Amp_8p11.23	0.721	1
9p-Del	Del_16p13.3	0.721	1
Amp_1q21.3	Del_Xp11.3	0.721	1
Amp_19q13.43	Del_Xq21.33	0.721	1
ARID1A	ZBTB7B	0.722	1
ERBB3	8q-Amp	0.722	1
FAT1	5q-Del	0.722	1
KLF5	Amp_17q23.3	0.722	1
MLL2	Del_5q12.1	0.722	1
NFE2L2	Del_9p23	0.722	1
RPTN	Del_17p12	0.722	1
TP53	Del_5q12.1	0.722	1
TSC1	Del_4q34.2	0.722	1
ZBTB7B	Amp_5p15.33	0.722	1
8q-Amp	Del_11q25	0.722	1
5q-Del	Del_11q23.3	0.722	1
6q-Del	Amp_3p25.2	0.722	1
Amp_11q22.2	Del_9p23	0.722	1
ATM	Del_18q23	0.723	1
ERBB2	Del_12p13.1	0.723	1
FBXW7	FOXQ1	0.723	1
FBXW7	Del_1p36.11	0.723	1
HES1	8p-Del	0.723	1
RB1	ZFP36L1	0.723	1
RB1	Amp_22q12.2	0.723	1
STAG2	ZFP36L1	0.723	1
THRAP3	Amp_1p34.2	0.723	1
ZFP36L1	Amp_8p11.23	0.723	1
20p-Amp	Del_11q23.3	0.723	1
8p-Del	Amp_6q21	0.723	1
9p-Del	Amp_22q12.2	0.723	1
Amp_8p11.23	Amp_22q12.2	0.723	1
Amp_19q12	Del_12p13.1	0.723	1
KDM6A	PKHD1	0.724	1
KRAS	Del_9p21.3	0.724	1
PKHD1	Amp_19q13.43	0.724	1
PLCXD3	Amp_8q22.3	0.724	1
PSIP1	RB1	0.724	1
RB1	15q-Del	0.724	1
RHOB	Amp_6p22.3	0.724	1
RPTN	14q-Del	0.724	1
ZNF185	Amp_6p22.3	0.724	1
8q-Amp	5q-Del	0.724	1
14q-Del	Amp_4q13.3	0.724	1
4p-Del	Amp_4q13.3	0.724	1
ASXL2	7q-Amp	0.725	1
DNAH6	8p-Del	0.725	1
KDM6A	Del_16p13.3	0.725	1
NF1	22q-Del	0.725	1
TXNIP	8p-Del	0.725	1
7p-Amp	Del_11p15.5	0.725	1
7q-Amp	Amp_17q12	0.725	1
ERBB2	19q-Amp	0.726	1
KRAS	Amp_16p13.2	0.726	1
PIK3CA	Amp_3q26.33	0.726	1
PIK3CA	Del_10q23.31	0.726	1
PKHD1	RUNX1	0.726	1
PKHD1	Del_Xp11.3	0.726	1
RB1	17p-Del	0.726	1
RPTN	Amp_19q12	0.726	1
RUNX1	Amp_16p13.2	0.726	1
RXRA	Del_9p21.3	0.726	1
TP53	17p-Del	0.726	1
CREBBP	Del_4q22.1	0.727	1
ERBB2	Del_2q34	0.727	1
FAM47C	FAT1	0.727	1
FAM47C	20q-Amp	0.727	1
FAT1	RAI1	0.727	1
FAT1	RBM10	0.727	1
MBD1	8q-Amp	0.727	1
TMCO4	Del_18q23	0.727	1
ZFP36L1	20p-Amp	0.727	1
17q-Amp	Del_18q23	0.727	1
Amp_19q12	Del_2q34	0.727	1
Del_1q32.1	Del_18q23	0.727	1
Del_18q23	Del_Xq21.33	0.727	1
ARID1A	Amp_10p14	0.728	1
EP300	Del_3p14.2	0.728	1
GNA13	Del_9p23	0.728	1
HES1	Amp_6q21	0.728	1
KIAA1267	ZNF185	0.728	1
MBD1	Del_9p23	0.728	1
NFE2L2	ZNF185	0.728	1
RXRA	ZNF185	0.728	1
ZNF185	16p-Del	0.728	1
ZNF185	22q-Del	0.728	1
ZNF185	Amp_11q22.2	0.728	1
C3orf70	Amp_1q21.3	0.729	1
CNOT1	Amp_19q13.43	0.729	1
CSMD3	Amp_16p13.2	0.729	1
DNAH6	Amp_22q12.2	0.729	1
EP300	Amp_1q21.3	0.729	1
FAM47C	Amp_19q13.43	0.729	1
FAT1	SCARF2	0.729	1
KDM6A	Amp_8q22.3	0.729	1
PLCXD3	7q-Amp	0.729	1
PLCXD3	15q-Del	0.729	1
PSIP1	15q-Del	0.729	1
RB1	Amp_4q13.3	0.729	1
RB1	Del_7q36.3	0.729	1
RPTN	9p-Del	0.729	1
SCARF2	20q-Amp	0.729	1
TXNIP	ZFP36L1	0.729	1
TXNIP	Amp_22q12.2	0.729	1
ZNF185	Amp_20q11.21	0.729	1
3p-Amp	Amp_1q21.3	0.729	1
17p-Del	Amp_1q21.3	0.729	1
Amp_19q13.43	Del_2q34	0.729	1
ARID1A	SHANK1	0.73	1
ARID1A	Amp_7p11.2	0.73	1
ASXL2	FBXW7	0.73	1
CNNM4	GNA13	0.73	1
CNNM4	TMCO4	0.73	1
CNNM4	17q-Amp	0.73	1
CNNM4	Del_Xq21.33	0.73	1
CNOT1	Amp_4p16.3	0.73	1
FAM47C	Amp_4p16.3	0.73	1
GNA13	NF2	0.73	1
GNA13	SF1	0.73	1
MBD1	NF2	0.73	1
MBD1	SF1	0.73	1
NF2	TMCO4	0.73	1
NF2	17q-Amp	0.73	1
NF2	Del_1q32.1	0.73	1
NF2	Del_Xq21.33	0.73	1
RBM10	Amp_4p16.3	0.73	1
RPTN	SCARF2	0.73	1
RPTN	19p-Del	0.73	1
SCARF2	19q-Amp	0.73	1
SCARF2	Amp_4q13.3	0.73	1
SF1	TMCO4	0.73	1
SF1	17q-Amp	0.73	1
SF1	Del_1q32.1	0.73	1
SF1	Del_Xq21.33	0.73	1
19q-Amp	19p-Del	0.73	1
20p-Amp	3p-Amp	0.73	1
20q-Amp	Amp_8p11.23	0.73	1
19p-Del	Amp_4q13.3	0.73	1
C3orf70	HLA-A	0.731	1
C3orf70	NRAS	0.731	1
CUL1	NUDT11	0.731	1
CUL1	UNC93B1	0.731	1
HES1	Del_5q12.1	0.731	1
HLA-A	METTL3	0.731	1
HLA-A	3p-Amp	0.731	1
METTL3	NRAS	0.731	1
METTL3	NUDT11	0.731	1
METTL3	UNC93B1	0.731	1
NRAS	3p-Amp	0.731	1
NUDT11	3p-Amp	0.731	1
PARD3	5p-Amp	0.731	1
ZBTB7B	9q-Del	0.731	1
Amp_1q21.3	Amp_12q15	0.731	1
SHANK1	Del_12p13.1	0.732	1
3q-Amp	Del_10q23.31	0.732	1
Amp_13q22.1	Del_5q12.1	0.732	1
ASXL2	ZBTB7B	0.733	1
ASXL2	Amp_6q21	0.733	1
ELF3	NF1	0.733	1
HES1	Amp_17q12	0.733	1
IDH1	Amp_7p11.2	0.733	1
MBD1	TSC1	0.733	1
PLCXD3	8p-Del	0.733	1
TSC1	5p-Amp	0.733	1
TSC1	Del_Xq21.33	0.733	1
3q-Amp	Del_5q12.1	0.733	1
9q-Del	Del_15q13.1	0.733	1
Amp_6q21	Amp_17q12	0.733	1
BCL2L1	Amp_1p34.2	0.734	1
CDKN2A	Del_17p12	0.734	1
KLF5	Del_18q23	0.734	1
DNAH6	9q-Del	0.735	1
MLL	3q-Amp	0.735	1
PKHD1	Amp_10p14	0.735	1
3q-Amp	Amp_13q22.1	0.735	1
Amp_12q15	Del_15q13.1	0.735	1
Del_6p25.3	Del_15q13.1	0.735	1
EP300	METTL3	0.736	1
ERBB3	Amp_8q22.3	0.736	1
FGFR3	Del_4q22.1	0.736	1
IDH1	KRAS	0.736	1
IDH1	RUNX1	0.736	1
IDH1	Del_Xp11.3	0.736	1
3p-Amp	17p-Del	0.736	1
Amp_1q23.3	Amp_8p11.23	0.736	1
ARID1B	METTL3	0.737	1
C3orf70	KLF5	0.737	1
CREBBP	Amp_4q13.3	0.737	1
CREBBP	Amp_7p11.2	0.737	1
CREBBP	Del_7q36.3	0.737	1
CSMD3	NRAS	0.737	1
CSMD3	NUDT11	0.737	1
CUL1	4q-Del	0.737	1
DNAH6	Amp_7p11.2	0.737	1
FGFR3	HLA-A	0.737	1
HLA-A	STAG2	0.737	1
KLF5	METTL3	0.737	1
NRAS	Del_16p13.3	0.737	1
NUDT11	Del_16p13.3	0.737	1
PARD3	Del_11q25	0.737	1
PARD3	Del_15q13.1	0.737	1
RPTN	Amp_7p21.1	0.737	1
3p-Amp	4q-Del	0.737	1
6q-Del	Del_12p13.1	0.737	1
Amp_4q13.3	Del_6q27	0.737	1
Amp_7p21.1	Del_12p13.1	0.737	1
Amp_7p11.2	Del_11q25	0.737	1
Amp_20q11.21	Del_Xp11.3	0.737	1
Del_12p13.1	Del_15q13.1	0.737	1
ARID1B	ZNF185	0.738	1
CDKN2A	19q-Amp	0.738	1
CDKN2A	14q-Del	0.738	1
CDKN2A	Del_7q36.3	0.738	1
CREBBP	Del_8p21.3	0.738	1
ERBB2	MLL3	0.738	1
ERBB2	Del_2q37.1	0.738	1
KIAA1267	MLL	0.738	1
KIAA1267	Amp_12q15	0.738	1
NF1	Del_Xp11.3	0.738	1
PARD3	Del_8p23.3	0.738	1
RHOA	18q-Del	0.738	1
RHOA	Del_14q24.1	0.738	1
RHOB	14q-Del	0.738	1
SHANK1	18q-Del	0.738	1
SHANK1	Del_14q24.1	0.738	1
ZNF185	4q-Del	0.738	1
11q-Del	Del_8p23.3	0.738	1
16p-Del	Amp_12q15	0.738	1
16p-Del	Amp_13q22.1	0.738	1
Amp_8p11.21	Del_19p13.3	0.738	1
Amp_11q22.2	Amp_12q15	0.738	1
Amp_19q12	Del_2q37.1	0.738	1
Del_7q36.3	Del_9p21.3	0.738	1
CNNM4	18q-Del	0.739	1
CNNM4	Del_14q24.1	0.739	1
ERBB2	Amp_12q15	0.739	1
ERBB2	Del_6p25.3	0.739	1
FAM47C	Amp_1q21.3	0.739	1
MLL3	Del_16q23.1	0.739	1
NF2	18q-Del	0.739	1
RHOB	8p-Del	0.739	1
SF1	18q-Del	0.739	1
SF1	Del_14q24.1	0.739	1
Amp_6q21	Del_13q14.2	0.739	1
Del_2q22.1	Del_13q14.2	0.739	1
KRAS	Amp_3q26.33	0.74	1
KRAS	Del_10q23.31	0.74	1
RHOB	Del_9p21.3	0.74	1
7q-Amp	11q-Del	0.74	1
Amp_3q26.33	Del_Xp11.3	0.74	1
CTNNB1	FAT1	0.741	1
CTNNB1	Del_11q23.3	0.741	1
ERCC2	14q-Del	0.741	1
FAT1	FOXQ1	0.741	1
FAT1	1q-Amp	0.741	1
FOXA1	20q-Amp	0.741	1
FOXQ1	20q-Amp	0.741	1
FOXQ1	Del_11q23.3	0.741	1
PIK3CA	PSIP1	0.741	1
PIK3CA	15q-Del	0.741	1
PLCXD3	Amp_4p16.3	0.741	1
PTEN	Del_11q23.3	0.741	1
20p-Amp	Amp_8p11.21	0.741	1
Amp_7p11.2	Amp_16p13.2	0.741	1
CREBBP	FBXW7	0.742	1
CREBBP	Amp_1p34.2	0.742	1
ERBB3	ZFP36L1	0.742	1
FBXW7	KIAA1267	0.742	1
FBXW7	RXRA	0.742	1
FBXW7	Amp_11q22.2	0.742	1
FBXW7	Del_11q25	0.742	1
IDH1	Amp_12q15	0.742	1
IDH1	Amp_13q22.1	0.742	1
RXRA	Amp_1p34.2	0.742	1
SCARF2	Del_9p23	0.742	1
3q-Amp	10q-Del	0.742	1
ARID1A	BCL2L1	0.743	1
BCL2L1	Amp_5p15.33	0.743	1
NFE2L2	PIK3CA	0.743	1
PIK3CA	RXRA	0.743	1
PIK3CA	Del_1q32.1	0.743	1
RAI1	9q-Del	0.743	1
RB1	SF1	0.743	1
RBM10	9q-Del	0.743	1
RBM10	Del_5q12.1	0.743	1
RHOA	Del_11p15.5	0.743	1
Amp_8p11.23	Amp_12q15	0.743	1
Amp_8p11.23	Del_6p25.3	0.743	1
Amp_13q22.1	Del_16p13.3	0.743	1
CDKN1A	Amp_6q21	0.744	1
DNAH6	KIAA1267	0.744	1
DNAH6	16p-Del	0.744	1
DNAH6	22q-Del	0.744	1
GNA13	3q-Amp	0.744	1
GNA13	Del_15q13.1	0.744	1
HRAS	KIAA1267	0.744	1
HRAS	RXRA	0.744	1
HRAS	16p-Del	0.744	1
MBD1	10q-Del	0.744	1
NFE2L2	TXNIP	0.744	1
TMCO4	3q-Amp	0.744	1
TMCO4	6q-Del	0.744	1
ZBTB7B	5q-Del	0.744	1
17q-Amp	Del_15q13.1	0.744	1
3q-Amp	Del_1q32.1	0.744	1
3q-Amp	Del_Xq21.33	0.744	1
10q-Del	Del_1q32.1	0.744	1
Amp_6q21	Del_19p13.3	0.744	1
Del_1q32.1	Del_15q13.1	0.744	1
DNAH6	HLA-A	0.745	1
DNAH6	NUDT11	0.745	1
DNAH6	UNC93B1	0.745	1
ELF3	8q-Amp	0.745	1
ELF3	Del_18q23	0.745	1
ERBB3	Del_17p12	0.745	1
HLA-A	HRAS	0.745	1
HLA-A	TXNIP	0.745	1
HRAS	NRAS	0.745	1
HRAS	NUDT11	0.745	1
HRAS	UNC93B1	0.745	1
NUDT11	TXNIP	0.745	1
PSIP1	Del_2q34	0.745	1
SCARF2	Amp_19q12	0.745	1
TP53	Del_6q27	0.745	1
ZNF185	Amp_3p25.2	0.745	1
CTNNB1	19p-Del	0.746	1
FOXA1	SCARF2	0.746	1
FOXQ1	SCARF2	0.746	1
KDM6A	Del_9p23	0.746	1
PTEN	19p-Del	0.746	1
SCARF2	1q-Amp	0.746	1
SCARF2	Del_1p36.11	0.746	1
THRAP3	19p-Del	0.746	1
1q-Amp	19p-Del	0.746	1
5p-Amp	14q-Del	0.746	1
5p-Amp	4p-Del	0.746	1
19p-Del	Del_1p36.11	0.746	1
Amp_6p22.3	Amp_12q15	0.746	1
ARID1B	NF1	0.747	1
CDKN1A	FBXW7	0.747	1
CTNNB1	MLL3	0.747	1
CUL1	8q-Amp	0.747	1
CUL1	Del_18q23	0.747	1
FOXQ1	Del_2q37.1	0.747	1
HES1	5p-Amp	0.747	1
MLL3	THRAP3	0.747	1
ZBTB7B	5p-Amp	0.747	1
1q-Amp	Del_2q37.1	0.747	1
Amp_3q26.33	Del_2q34	0.747	1
ELF3	Amp_4q13.3	0.748	1
ELF3	Del_7q36.3	0.748	1
METTL3	Amp_20q11.21	0.748	1
PKHD1	8p-Del	0.748	1
RPTN	Amp_17q23.3	0.748	1
RPTN	Del_3p14.2	0.748	1
ZNF185	Del_12p13.1	0.748	1
5p-Amp	Del_8p21.3	0.748	1
Amp_17q23.3	Del_7q36.3	0.748	1
ASXL2	CREBBP	0.749	1
ATM	KRAS	0.749	1
ATM	Del_Xp11.3	0.749	1
ERCC2	NF2	0.749	1
ERCC2	SF1	0.749	1
FAT1	4p-Del	0.749	1
HRAS	MLL	0.749	1
HRAS	Del_6p25.3	0.749	1
HRAS	Del_16q23.1	0.749	1
KDM6A	PSIP1	0.749	1
KDM6A	Amp_19q12	0.749	1
MLL	TXNIP	0.749	1
PIK3CA	8p-Del	0.749	1
RBM10	Amp_6p22.3	0.749	1
TXNIP	Amp_13q22.1	0.749	1
Amp_17q12	Del_11q25	0.749	1
Del_4q34.2	Del_Xp11.3	0.749	1
ARID1B	Amp_7p11.2	0.75	1
CNNM4	HES1	0.75	1
FAM47C	RHOA	0.75	1
FOXQ1	4p-Del	0.75	1
KLF5	SPTAN1	0.75	1
NF2	ZBTB7B	0.75	1
PTEN	14q-Del	0.75	1
RBM10	RHOA	0.75	1
SF1	ZBTB7B	0.75	1
SF1	Amp_6q21	0.75	1
SPTAN1	4q-Del	0.75	1
THRAP3	14q-Del	0.75	1
THRAP3	4p-Del	0.75	1
17q-Amp	Del_8p21.3	0.75	1
1q-Amp	4p-Del	0.75	1
14q-Del	Del_1p36.11	0.75	1
4q-Del	Amp_7p11.2	0.75	1
Del_8p21.3	Del_Xq21.33	0.75	1
ASXL2	Amp_4p16.3	0.751	1
BCL2L1	14q-Del	0.751	1
FGFR3	Del_2q22.1	0.751	1
FOXA1	Amp_8p11.21	0.751	1
FOXA1	Del_2q22.1	0.751	1
IDH1	20p-Amp	0.751	1
NRAS	Amp_3q26.33	0.751	1
NUDT11	Del_10q23.31	0.751	1
RUNX1	Amp_1p34.2	0.751	1
THRAP3	Del_2q22.1	0.751	1
TP53	Amp_20q11.21	0.751	1
UNC93B1	Amp_11q13.3	0.751	1
UNC93B1	Del_10q23.31	0.751	1
Amp_4p16.3	Amp_17q12	0.751	1
Del_4q22.1	Del_9p21.3	0.751	1
ARID1A	THRAP3	0.752	1
ARID1A	Del_1p36.11	0.752	1
CNOT1	ERBB2	0.752	1
CNOT1	Amp_19q12	0.752	1
CSMD3	NFE2L2	0.752	1
FGFR3	NFE2L2	0.752	1
FOXQ1	Amp_5p15.33	0.752	1
NFE2L2	STAG2	0.752	1
NFE2L2	Del_22q13.32	0.752	1
PARD3	TP53	0.752	1
PARD3	Amp_3p25.2	0.752	1
RAI1	Amp_19q12	0.752	1
RXRA	Del_16p13.3	0.752	1
RXRA	Del_22q13.32	0.752	1
STAG2	Amp_11q22.2	0.752	1
TP53	Del_12p13.1	0.752	1
19q-Amp	Del_8p21.3	0.752	1
20p-Amp	Amp_11q22.2	0.752	1
22q-Del	Amp_8p11.23	0.752	1
Amp_11q22.2	Del_22q13.32	0.752	1
Del_9p23	Del_16p13.3	0.752	1
CREBBP	SCARF2	0.753	1
CSMD3	RHOA	0.753	1
CSMD3	SHANK1	0.753	1
ELF3	Del_9p21.3	0.753	1
PARD3	Amp_16p13.2	0.753	1
PLCXD3	SHANK1	0.753	1
RHOA	Amp_8p11.23	0.753	1
RPTN	Amp_22q12.2	0.753	1
SHANK1	Del_16p13.3	0.753	1
ZFP36L1	19q-Amp	0.753	1
ZFP36L1	Del_7q36.3	0.753	1
19q-Amp	Amp_22q12.2	0.753	1
19p-Del	Amp_7p21.1	0.753	1
ARID1A	CREBBP	0.754	1
CREBBP	Amp_5p15.33	0.754	1
EP300	PARD3	0.754	1
GNA13	IDH1	0.754	1
IDH1	17q-Amp	0.754	1
PIK3CA	19p-Del	0.754	1
PKHD1	Amp_3p25.2	0.754	1
7q-Amp	Amp_19q13.43	0.754	1
Amp_4p16.3	Del_4q34.2	0.754	1
Amp_5p15.33	Del_11q25	0.754	1
CTNNB1	Amp_8q22.3	0.755	1
EP300	18q-Del	0.755	1
FOXA1	Amp_8q22.3	0.755	1
MLL	Del_14q24.1	0.755	1
NF1	Del_16p13.3	0.755	1
RB1	Amp_1p34.2	0.755	1
1q-Amp	Amp_8q22.3	0.755	1
Amp_1q21.3	Del_2q34	0.755	1
ARID1A	3q-Amp	0.756	1
GNA13	PKHD1	0.756	1
GNA13	Amp_16p13.2	0.756	1
MBD1	Amp_16p13.2	0.756	1
PARD3	Amp_1q23.3	0.756	1
PKHD1	Del_1q32.1	0.756	1
PKHD1	Del_Xq21.33	0.756	1
SPTAN1	Amp_11q13.3	0.756	1
SPTAN1	Amp_17q23.3	0.756	1
SPTAN1	Del_3p14.2	0.756	1
SPTAN1	Del_10q23.31	0.756	1
17q-Amp	Amp_16p13.2	0.756	1
Amp_7p11.2	Amp_17q23.3	0.756	1
Amp_7p11.2	Del_10q23.31	0.756	1
Amp_16p13.2	Del_1q32.1	0.756	1
ASXL2	Del_4q22.1	0.757	1
RB1	Del_14q24.1	0.757	1
ZFP36L1	4p-Del	0.757	1
16p-Del	9p-Del	0.757	1
9p-Del	Amp_11q22.2	0.757	1
Amp_1p34.2	Del_3p14.2	0.757	1
Amp_4q13.3	Amp_10p14	0.757	1
Amp_12q15	Amp_16p13.2	0.757	1
Amp_13q22.1	Amp_16p13.2	0.757	1
Amp_13q22.1	Del_11q25	0.757	1
Del_6p25.3	Del_11q25	0.757	1
ATM	NRAS	0.758	1
ERCC2	Del_19p13.3	0.758	1
FBXW7	Amp_1q21.3	0.758	1
KLF5	Del_2q37.1	0.758	1
MLL3	7p-Amp	0.758	1
MLL3	4q-Del	0.758	1
RAI1	ZNF185	0.758	1
RBM10	ZNF185	0.758	1
Amp_11q13.3	Amp_16p13.2	0.758	1
ASXL2	FGFR3	0.759	1
BCL2L1	CDKN2A	0.759	1
CSMD3	Amp_17q12	0.759	1
ERBB3	Del_8p23.3	0.759	1
HLA-A	19q-Amp	0.759	1
HLA-A	Amp_4q13.3	0.759	1
HLA-A	Del_7q36.3	0.759	1
NRAS	RPTN	0.759	1
NRAS	Amp_4q13.3	0.759	1
NRAS	Del_7q36.3	0.759	1
NUDT11	RPTN	0.759	1
NUDT11	Amp_4q13.3	0.759	1
NUDT11	Del_7q36.3	0.759	1
RBM10	Amp_20q11.21	0.759	1
RBM10	Del_8p21.3	0.759	1
RPTN	UNC93B1	0.759	1
SF1	Del_4q22.1	0.759	1
UNC93B1	19q-Amp	0.759	1
UNC93B1	Amp_4q13.3	0.759	1
UNC93B1	Del_7q36.3	0.759	1
20p-Amp	Amp_1q21.3	0.759	1
Amp_10p14	Amp_22q12.2	0.759	1
Amp_19q12	Del_22q13.32	0.759	1
ARID1B	TXNIP	0.76	1
DNAH6	KLF5	0.76	1
FAM47C	10q-Del	0.76	1
FAM47C	6q-Del	0.76	1
HRAS	7p-Amp	0.76	1
HRAS	4q-Del	0.76	1
KLF5	TXNIP	0.76	1
MLL2	Amp_10p14	0.76	1
RAI1	Del_15q13.1	0.76	1
RBM10	6q-Del	0.76	1
RBM10	Del_15q13.1	0.76	1
TXNIP	4q-Del	0.76	1
5p-Amp	Del_15q13.1	0.76	1
18q-Del	Amp_19q13.43	0.76	1
Amp_6p22.3	Del_5q12.1	0.76	1
ARID1A	Amp_13q22.1	0.761	1
CSMD3	Del_17p12	0.761	1
CTNNB1	Amp_19q12	0.761	1
ELF3	19p-Del	0.761	1
ERBB2	FOXQ1	0.761	1
ERBB2	1q-Amp	0.761	1
FOXA1	Amp_19q12	0.761	1
KDM6A	Del_4q22.1	0.761	1
PKHD1	3q-Amp	0.761	1
PKHD1	Del_15q13.1	0.761	1
PTEN	Amp_19q12	0.761	1
TP53	7q-Amp	0.761	1
5p-Amp	8p-Del	0.761	1
CSMD3	Del_1q32.1	0.762	1
CSMD3	Del_Xq21.33	0.762	1
ERBB2	Del_13q14.2	0.762	1
FGFR3	GNA13	0.762	1
FGFR3	Del_1q32.1	0.762	1
FGFR3	Del_Xq21.33	0.762	1
GNA13	Amp_8p11.23	0.762	1
GNA13	Del_16p13.3	0.762	1
KRAS	SCARF2	0.762	1
MBD1	STAG2	0.762	1
PLCXD3	Del_8p21.3	0.762	1
RB1	Del_2q22.1	0.762	1
RUNX1	SCARF2	0.762	1
RUNX1	19p-Del	0.762	1
SCARF2	Del_Xp11.3	0.762	1
STAG2	Del_1q32.1	0.762	1
TMCO4	Amp_8p11.23	0.762	1
17q-Amp	Del_16p13.3	0.762	1
19p-Del	Del_Xp11.3	0.762	1
Amp_8p11.23	Del_1q32.1	0.762	1
Amp_19q12	Del_13q14.2	0.762	1
ARID1A	HLA-A	0.763	1
ARID1B	MLL	0.763	1
ARID1B	Del_16q23.1	0.763	1
EP300	ZBTB7B	0.763	1
EP300	Amp_6q21	0.763	1
GNA13	MLL2	0.763	1
KLF5	Amp_12q15	0.763	1
MLL	7p-Amp	0.763	1
MLL	4q-Del	0.763	1
MLL3	Amp_3p25.2	0.763	1
NRAS	Amp_5p15.33	0.763	1
NUDT11	Amp_5p15.33	0.763	1
7p-Amp	Amp_12q15	0.763	1
7p-Amp	Del_16q23.1	0.763	1
Amp_1p34.2	Del_17p12	0.763	1
CDKN2A	FOXA1	0.764	1
CDKN2A	FOXQ1	0.764	1
CDKN2A	Del_1p36.11	0.764	1
FAM47C	5p-Amp	0.764	1
KDM6A	RUNX1	0.764	1
KIAA1267	Del_8p21.3	0.764	1
PLCXD3	17p-Del	0.764	1
PTEN	RHOB	0.764	1
RHOB	1q-Amp	0.764	1
ASXL2	Amp_17q23.3	0.765	1
C3orf70	PLCXD3	0.765	1
CNOT1	Del_11q25	0.765	1
ERBB2	Del_2q22.1	0.765	1
FAM47C	Amp_7p21.1	0.765	1
METTL3	PLCXD3	0.765	1
NF2	Amp_10p14	0.765	1
PARD3	Del_18q23	0.765	1
PLCXD3	3p-Amp	0.765	1
RAI1	Amp_7p21.1	0.765	1
RBM10	Amp_7p21.1	0.765	1
SF1	Amp_10p14	0.765	1
TSC1	Amp_6q21	0.765	1
20p-Amp	Amp_8p11.23	0.765	1
5q-Del	Amp_4p16.3	0.765	1
Amp_19q12	Del_2q22.1	0.765	1
CSMD3	17p-Del	0.766	1
EP300	Amp_8p11.23	0.766	1
ERBB3	KIAA1267	0.766	1
ERBB3	16p-Del	0.766	1
PSIP1	8p-Del	0.766	1
STAG2	11p-Del	0.766	1
ZNF185	Del_2q37.1	0.766	1
19q-Amp	8p-Del	0.766	1
9p-Del	Amp_3q26.33	0.766	1
ARID1B	KDM6A	0.767	1
BCL2L1	ZFP36L1	0.767	1
BCL2L1	Amp_22q12.2	0.767	1
CUL1	Del_14q24.1	0.767	1
KDM6A	7p-Amp	0.767	1
METTL3	18q-Del	0.767	1
MLL3	Del_9p21.3	0.767	1
ZBTB7B	Amp_8q22.3	0.767	1
3p-Amp	Del_14q24.1	0.767	1
Del_2q37.1	Del_9p21.3	0.767	1
ASXL2	CNNM4	0.768	1
FAT1	TSC1	0.768	1
KIAA1267	19q-Amp	0.768	1
KIAA1267	Del_7q36.3	0.768	1
MBD1	NF1	0.768	1
NF1	PARD3	0.768	1
NF1	Del_Xq21.33	0.768	1
NFE2L2	RPTN	0.768	1
NFE2L2	19q-Amp	0.768	1
RHOA	7q-Amp	0.768	1
RHOA	15q-Del	0.768	1
RPTN	16p-Del	0.768	1
RPTN	22q-Del	0.768	1
RPTN	Amp_11q22.2	0.768	1
RUNX1	Del_2q34	0.768	1
RXRA	19q-Amp	0.768	1
RXRA	Amp_4q13.3	0.768	1
SHANK1	7q-Amp	0.768	1
19q-Amp	16p-Del	0.768	1
19q-Amp	22q-Del	0.768	1
19q-Amp	Amp_11q22.2	0.768	1
22q-Del	Amp_4q13.3	0.768	1
22q-Del	Del_7q36.3	0.768	1
ARID1A	Del_14q24.1	0.769	1
CDKN1A	Amp_10p14	0.769	1
MLL2	RB1	0.769	1
PSIP1	ZNF185	0.769	1
RPTN	Amp_7p11.2	0.769	1
RUNX1	Del_11p15.5	0.769	1
SPTAN1	19q-Amp	0.769	1
ZNF185	15q-Del	0.769	1
19q-Amp	Amp_7p11.2	0.769	1
7q-Amp	Amp_8p11.21	0.769	1
15q-Del	Amp_8p11.21	0.769	1
Amp_3p25.2	Del_2q22.1	0.769	1
Del_11p15.5	Del_Xp11.3	0.769	1
ARID1A	Del_2q37.1	0.77	1
CNNM4	NF2	0.77	1
CNNM4	SF1	0.77	1
CREBBP	5q-Del	0.77	1
CREBBP	Del_19p13.3	0.77	1
MLL3	Amp_5p15.33	0.77	1
NF2	SF1	0.77	1
8q-Amp	Del_14q24.1	0.77	1
ASXL2	9q-Del	0.771	1
C3orf70	CNOT1	0.771	1
C3orf70	FAM47C	0.771	1
CNOT1	3p-Amp	0.771	1
CREBBP	CTNNB1	0.771	1
CREBBP	FOXA1	0.771	1
CTNNB1	Del_11q25	0.771	1
CUL1	FAM47C	0.771	1
CUL1	RAI1	0.771	1
FAM47C	METTL3	0.771	1
FOXA1	Amp_7p21.1	0.771	1
FOXQ1	Amp_7p21.1	0.771	1
HES1	8q-Amp	0.771	1
METTL3	RAI1	0.771	1
MLL2	RHOA	0.771	1
RPTN	Del_9p23	0.771	1
1q-Amp	Amp_7p21.1	0.771	1
5p-Amp	Amp_3q26.33	0.771	1
5p-Amp	Amp_11q13.3	0.771	1
18q-Del	Amp_22q12.2	0.771	1
5q-Del	Amp_3p25.2	0.771	1
Amp_6q21	Del_18q23	0.771	1
Amp_7p21.1	Del_1p36.11	0.771	1
Amp_17q23.3	Del_8p21.3	0.771	1
ATM	PKHD1	0.772	1
ERBB3	HRAS	0.772	1
HES1	IDH1	0.772	1
IDH1	ZBTB7B	0.772	1
IDH1	Amp_6q21	0.772	1
NUDT11	Del_2q34	0.772	1
PKHD1	Del_4q34.2	0.772	1
RB1	1q-Amp	0.772	1
SF1	8p-Del	0.772	1
SPTAN1	Del_4q34.2	0.772	1
THRAP3	9p-Del	0.772	1
UNC93B1	Del_2q34	0.772	1
Amp_16p13.2	Del_4q34.2	0.772	1
ASXL2	14q-Del	0.773	1
EP300	TXNIP	0.773	1
MLL2	20q-Amp	0.773	1
MLL3	10q-Del	0.773	1
SPTAN1	17p-Del	0.773	1
TXNIP	11p-Del	0.773	1
19q-Amp	Del_8p23.3	0.773	1
20p-Amp	Amp_6p22.3	0.773	1
14q-Del	Amp_17q12	0.773	1
4p-Del	Amp_17q12	0.773	1
Amp_4q13.3	Del_8p23.3	0.773	1
Amp_8q22.3	Del_2q22.1	0.773	1
Amp_8q22.3	Del_4q22.1	0.773	1
CSMD3	Amp_10p14	0.774	1
CTNNB1	HLA-A	0.774	1
CTNNB1	NRAS	0.774	1
CTNNB1	NUDT11	0.774	1
CTNNB1	UNC93B1	0.774	1
ELF3	8p-Del	0.774	1
FOXA1	NRAS	0.774	1
FOXA1	NUDT11	0.774	1
FOXA1	UNC93B1	0.774	1
FOXQ1	HLA-A	0.774	1
FOXQ1	NUDT11	0.774	1
FOXQ1	UNC93B1	0.774	1
HLA-A	THRAP3	0.774	1
HLA-A	1q-Amp	0.774	1
NF1	Del_8p21.3	0.774	1
NRAS	PTEN	0.774	1
NRAS	THRAP3	0.774	1
NRAS	1q-Amp	0.774	1
NUDT11	PTEN	0.774	1
NUDT11	THRAP3	0.774	1
NUDT11	1q-Amp	0.774	1
NUDT11	Del_1p36.11	0.774	1
PTEN	UNC93B1	0.774	1
PTEN	Del_17p12	0.774	1
RHOA	Amp_3q26.33	0.774	1
RPTN	9q-Del	0.774	1
THRAP3	Del_17p12	0.774	1
UNC93B1	1q-Amp	0.774	1
UNC93B1	Del_1p36.11	0.774	1
19q-Amp	Del_5q12.1	0.774	1
9q-Del	Amp_4q13.3	0.774	1
9q-Del	Del_7q36.3	0.774	1
Amp_8p11.23	Amp_10p14	0.774	1
ASXL2	Amp_17q12	0.775	1
CDKN2A	Amp_22q12.2	0.775	1
FAT1	Del_9p21.3	0.775	1
KDM6A	Del_5q12.1	0.775	1
PKHD1	RAI1	0.775	1
20q-Amp	Amp_5p15.33	0.775	1
Amp_12q15	Amp_17q23.3	0.775	1
Amp_13q22.1	Amp_17q23.3	0.775	1
BCL2L1	KIAA1267	0.776	1
BCL2L1	NFE2L2	0.776	1
BCL2L1	RXRA	0.776	1
BCL2L1	16p-Del	0.776	1
BCL2L1	22q-Del	0.776	1
BCL2L1	Amp_11q22.2	0.776	1
CNOT1	Del_9p21.3	0.776	1
CREBBP	Del_22q13.32	0.776	1
HES1	3q-Amp	0.776	1
HES1	6q-Del	0.776	1
HES1	Del_15q13.1	0.776	1
KLF5	20p-Amp	0.776	1
KLF5	Del_22q13.32	0.776	1
PARD3	Amp_7p11.2	0.776	1
PKHD1	Amp_8q22.3	0.776	1
SPTAN1	Del_12p13.1	0.776	1
TXNIP	Del_12p13.1	0.776	1
ZBTB7B	6q-Del	0.776	1
20p-Amp	4q-Del	0.776	1
7q-Amp	9q-Del	0.776	1
Amp_3q26.33	Amp_13q22.1	0.776	1
Amp_7p21.1	Del_22q13.32	0.776	1
Del_11q25	Del_22q13.32	0.776	1
ASXL2	RHOA	0.777	1
DNAH6	PLCXD3	0.777	1
ELF3	RBM10	0.777	1
ERCC2	Amp_19q13.43	0.777	1
FAT1	RUNX1	0.777	1
HRAS	PLCXD3	0.777	1
KIAA1267	Del_10q23.31	0.777	1
MLL2	Del_9p21.3	0.777	1
RUNX1	Del_11q23.3	0.777	1
RXRA	4p-Del	0.777	1
SCARF2	Amp_7p11.2	0.777	1
20q-Amp	Del_Xp11.3	0.777	1
14q-Del	Amp_11q22.2	0.777	1
14q-Del	Del_Xp11.3	0.777	1
16p-Del	Amp_11q13.3	0.777	1
4p-Del	Del_Xp11.3	0.777	1
Amp_1q21.3	Del_4q22.1	0.777	1
Amp_3q26.33	Amp_11q22.2	0.777	1
Del_9p21.3	Del_15q13.1	0.777	1
Del_11q23.3	Del_Xp11.3	0.777	1
CDKN1A	SF1	0.778	1
CNNM4	11q-Del	0.778	1
CNNM4	5q-Del	0.778	1
CNNM4	Del_19p13.3	0.778	1
CSMD3	Amp_11q13.3	0.778	1
ERCC2	11p-Del	0.778	1
FOXA1	Amp_22q12.2	0.778	1
GNA13	SCARF2	0.778	1
GNA13	19p-Del	0.778	1
MBD1	SCARF2	0.778	1
MBD1	19p-Del	0.778	1
MLL2	Del_2q37.1	0.778	1
NF2	5q-Del	0.778	1
SCARF2	TMCO4	0.778	1
SCARF2	17q-Amp	0.778	1
SCARF2	Del_1q32.1	0.778	1
SCARF2	Del_Xq21.33	0.778	1
SF1	5q-Del	0.778	1
SF1	Del_19p13.3	0.778	1
SHANK1	Del_8p23.3	0.778	1
THRAP3	Amp_22q12.2	0.778	1
TMCO4	19p-Del	0.778	1
ZFP36L1	1q-Amp	0.778	1
17q-Amp	19p-Del	0.778	1
1q-Amp	Amp_22q12.2	0.778	1
7q-Amp	Amp_1q21.3	0.778	1
19p-Del	Del_Xq21.33	0.778	1
Amp_3q26.33	Amp_8p11.23	0.778	1
Amp_4p16.3	Amp_19q13.43	0.778	1
C3orf70	ERCC2	0.779	1
CNNM4	Del_5q12.1	0.779	1
ERBB3	Amp_19q12	0.779	1
FAT1	NRAS	0.779	1
FAT1	NUDT11	0.779	1
GNA13	Amp_3q26.33	0.779	1
GNA13	Amp_6p22.3	0.779	1
GNA13	Del_10q23.31	0.779	1
HLA-A	20q-Amp	0.779	1
HLA-A	Del_11q23.3	0.779	1
MBD1	Del_10q23.31	0.779	1
NF1	3q-Amp	0.779	1
NF1	6q-Del	0.779	1
NRAS	20q-Amp	0.779	1
NUDT11	Del_11q23.3	0.779	1
UNC93B1	Del_11q23.3	0.779	1
UNC93B1	Del_17p12	0.779	1
ZNF185	Amp_4p16.3	0.779	1
17q-Amp	Amp_11q13.3	0.779	1
17q-Amp	Del_10q23.31	0.779	1
Amp_11q13.3	Del_1q32.1	0.779	1
Del_1q32.1	Del_10q23.31	0.779	1
CSMD3	Amp_1p34.2	0.78	1
FBXW7	TMCO4	0.78	1
GNA13	Amp_1p34.2	0.78	1
MLL	RPTN	0.78	1
MLL	19q-Amp	0.78	1
MLL	Amp_4q13.3	0.78	1
MLL	Del_7q36.3	0.78	1
NUDT11	TP53	0.78	1
RPTN	Amp_12q15	0.78	1
RPTN	Del_6p25.3	0.78	1
TP53	Amp_11q13.3	0.78	1
17q-Amp	Amp_1p34.2	0.78	1
19q-Amp	Del_6p25.3	0.78	1
19q-Amp	Del_16q23.1	0.78	1
20q-Amp	Amp_1q21.3	0.78	1
Amp_1p34.2	Del_Xq21.33	0.78	1
Amp_4q13.3	Amp_12q15	0.78	1
Amp_4q13.3	Del_6p25.3	0.78	1
ARID1A	RXRA	0.781	1
ARID1B	CSMD3	0.781	1
ARID1B	Del_16p13.3	0.781	1
CSMD3	7p-Amp	0.781	1
CSMD3	4q-Del	0.781	1
ELF3	FOXQ1	0.781	1
ELF3	THRAP3	0.781	1
ERBB2	PSIP1	0.781	1
ERBB2	7q-Amp	0.781	1
FGFR3	KLF5	0.781	1
FGFR3	4q-Del	0.781	1
KLF5	STAG2	0.781	1
MLL3	14q-Del	0.781	1
PSIP1	Amp_19q12	0.781	1
PTEN	Amp_17q23.3	0.781	1
RB1	ZNF185	0.781	1
THRAP3	Del_3p14.2	0.781	1
7q-Amp	Amp_19q12	0.781	1
ARID1A	ELF3	0.782	1
CDKN1A	8p-Del	0.782	1
FGFR3	Del_2q37.1	0.782	1
GNA13	Amp_1q23.3	0.782	1
PSIP1	10q-Del	0.782	1
TXNIP	Amp_6p22.3	0.782	1
3q-Amp	7q-Amp	0.782	1
3q-Amp	15q-Del	0.782	1
7q-Amp	6q-Del	0.782	1
7q-Amp	Del_15q13.1	0.782	1
Amp_5p15.33	Del_3p14.2	0.782	1
ARID1B	Amp_4q13.3	0.783	1
CREBBP	Amp_8p11.21	0.783	1
ERBB2	Amp_19q12	0.783	1
ERBB3	Amp_1q23.3	0.783	1
FGFR3	5q-Del	0.783	1
KDM6A	RHOB	0.783	1
KLF5	Amp_4q13.3	0.783	1
KLF5	Del_7q36.3	0.783	1
RPTN	7p-Amp	0.783	1
STAG2	11q-Del	0.783	1
TSC1	9p-Del	0.783	1
19q-Amp	7p-Amp	0.783	1
9p-Del	Amp_12q15	0.783	1
Amp_8p11.21	Del_6q27	0.783	1
Del_2q22.1	Del_6q27	0.783	1
Del_11q25	Del_13q14.2	0.783	1
ARID1B	BCL2L1	0.784	1
BCL2L1	KLF5	0.784	1
ELF3	Del_11q23.3	0.784	1
FAT1	Amp_17q23.3	0.784	1
FAT1	Del_3p14.2	0.784	1
NF1	Amp_3p25.2	0.784	1
NF2	Amp_5p15.33	0.784	1
SCARF2	Amp_6p22.3	0.784	1
20q-Amp	Del_3p14.2	0.784	1
Amp_1q21.3	Amp_11q22.2	0.784	1
Amp_6p22.3	Amp_17q23.3	0.784	1
Amp_8p11.23	Del_18q23	0.784	1
Del_4q34.2	Del_11q23.3	0.784	1
EP300	KDM6A	0.785	1
FAM47C	11p-Del	0.785	1
RHOA	Amp_4p16.3	0.785	1
SCARF2	Del_6p25.3	0.785	1
19p-Del	Amp_13q22.1	0.785	1
9p-Del	Amp_19q12	0.785	1
Amp_20q11.21	Del_2q34	0.785	1
Del_8p23.3	Del_18q23	0.785	1
C3orf70	CSMD3	0.786	1
C3orf70	Del_16p13.3	0.786	1
CDKN1A	ELF3	0.786	1
CUL1	Amp_8p11.23	0.786	1
ELF3	11q-Del	0.786	1
EP300	6q-Del	0.786	1
ERBB3	FGFR3	0.786	1
ERBB3	Amp_1q21.3	0.786	1
FAT1	18q-Del	0.786	1
HLA-A	Del_2q22.1	0.786	1
KRAS	Del_2q22.1	0.786	1
NRAS	Del_2q22.1	0.786	1
NUDT11	Amp_8p11.21	0.786	1
NUDT11	Del_2q22.1	0.786	1
PIK3CA	19q-Amp	0.786	1
PSIP1	Del_13q14.2	0.786	1
SPTAN1	Amp_1p34.2	0.786	1
UNC93B1	Amp_8p11.21	0.786	1
UNC93B1	Del_2q22.1	0.786	1
20q-Amp	Del_18q23	0.786	1
8q-Amp	Del_11q23.3	0.786	1
Amp_8q22.3	Del_12p13.1	0.786	1
Del_8p23.3	Del_11q23.3	0.786	1
Del_8p21.3	Del_9p21.3	0.786	1
C3orf70	15q-Del	0.787	1
CNOT1	Amp_3p25.2	0.787	1
CUL1	PSIP1	0.787	1
FAT1	TP53	0.787	1
HES1	Amp_16p13.2	0.787	1
MLL2	PIK3CA	0.787	1
PKHD1	ZBTB7B	0.787	1
PKHD1	Amp_6q21	0.787	1
PSIP1	Amp_6p22.3	0.787	1
RPTN	Amp_1q23.3	0.787	1
SCARF2	Amp_8q22.3	0.787	1
SF1	Del_13q14.2	0.787	1
20q-Amp	Amp_4p16.3	0.787	1
3p-Amp	7q-Amp	0.787	1
17p-Del	Amp_1q23.3	0.787	1
18q-Del	Amp_3p25.2	0.787	1
CNNM4	Amp_19q13.43	0.788	1
ERBB3	PKHD1	0.788	1
HLA-A	KRAS	0.788	1
HLA-A	RUNX1	0.788	1
KRAS	NRAS	0.788	1
KRAS	UNC93B1	0.788	1
MBD1	Del_4q34.2	0.788	1
NRAS	Del_Xp11.3	0.788	1
NUDT11	RUNX1	0.788	1
PARD3	Amp_13q22.1	0.788	1
PARD3	Del_16q23.1	0.788	1
17q-Amp	Del_4q34.2	0.788	1
20q-Amp	Amp_10p14	0.788	1
ATM	KIAA1267	0.789	1
ATM	Amp_11q22.2	0.789	1
BCL2L1	PIK3CA	0.789	1
KIAA1267	Amp_10p14	0.789	1
NF1	RBM10	0.789	1
NFE2L2	Del_4q34.2	0.789	1
PIK3CA	Del_14q24.1	0.789	1
4p-Del	Del_11q25	0.789	1
Amp_17q12	Del_10q23.31	0.789	1
ARID1A	Amp_16p13.2	0.79	1
ARID1B	ERBB3	0.79	1
CDKN2A	KRAS	0.79	1
CDKN2A	RUNX1	0.79	1
CDKN2A	Del_Xp11.3	0.79	1
ERBB3	Del_14q24.1	0.79	1
FAT1	3q-Amp	0.79	1
HRAS	Amp_20q11.21	0.79	1
KIAA1267	Del_8p23.3	0.79	1
KRAS	RHOB	0.79	1
PLCXD3	19q-Amp	0.79	1
PLCXD3	Amp_4q13.3	0.79	1
PLCXD3	Del_7q36.3	0.79	1
RHOA	ZNF185	0.79	1
RHOA	5q-Del	0.79	1
RHOA	Del_19p13.3	0.79	1
RHOB	RUNX1	0.79	1
RPTN	Del_22q13.32	0.79	1
SHANK1	Del_19p13.3	0.79	1
19q-Amp	Del_22q13.32	0.79	1
20p-Amp	Amp_4q13.3	0.79	1
20q-Amp	3q-Amp	0.79	1
19p-Del	Amp_20q11.21	0.79	1
Amp_4p16.3	Amp_10p14	0.79	1
Del_7q36.3	Del_22q13.32	0.79	1
C3orf70	Del_4q22.1	0.791	1
CNNM4	IDH1	0.791	1
CNOT1	TXNIP	0.791	1
CREBBP	CSMD3	0.791	1
CREBBP	FGFR3	0.791	1
CTNNB1	Amp_11q22.2	0.791	1
DNAH6	FAM47C	0.791	1
DNAH6	RAI1	0.791	1
FAM47C	TXNIP	0.791	1
FOXA1	16p-Del	0.791	1
FOXA1	22q-Del	0.791	1
FOXQ1	KIAA1267	0.791	1
FOXQ1	NFE2L2	0.791	1
FOXQ1	Amp_11q22.2	0.791	1
HRAS	RAI1	0.791	1
IDH1	NF2	0.791	1
IDH1	SF1	0.791	1
KIAA1267	PTEN	0.791	1
MLL3	PARD3	0.791	1
MLL3	Del_12p13.1	0.791	1
MLL3	Del_Xp11.3	0.791	1
NFE2L2	PTEN	0.791	1
NFE2L2	1q-Amp	0.791	1
PARD3	Del_2q37.1	0.791	1
PTEN	RXRA	0.791	1
PTEN	16p-Del	0.791	1
PTEN	Amp_11q22.2	0.791	1
RBM10	TXNIP	0.791	1
RUNX1	Del_2q37.1	0.791	1
STAG2	Del_11q25	0.791	1
THRAP3	22q-Del	0.791	1
1q-Amp	22q-Del	0.791	1
16p-Del	Del_1p36.11	0.791	1
Amp_8p11.23	Del_6q27	0.791	1
Amp_11q22.2	Del_1p36.11	0.791	1
ATM	Del_16q23.1	0.792	1
CREBBP	7q-Amp	0.792	1
PSIP1	Del_6q27	0.792	1
5p-Amp	Amp_4q13.3	0.792	1
Amp_22q12.2	Del_13q14.2	0.792	1
ASXL2	11q-Del	0.793	1
ASXL2	5q-Del	0.793	1
ASXL2	Del_19p13.3	0.793	1
BCL2L1	PARD3	0.793	1
BCL2L1	Del_12p13.1	0.793	1
CDKN2A	22q-Del	0.793	1
CDKN2A	Amp_11q22.2	0.793	1
ELF3	Del_22q13.32	0.793	1
ERBB2	HLA-A	0.793	1
HLA-A	Amp_19q12	0.793	1
KIAA1267	Del_14q24.1	0.793	1
NFE2L2	RHOB	0.793	1
NUDT11	Amp_19q12	0.793	1
RHOA	Amp_1q23.3	0.793	1
RHOB	22q-Del	0.793	1
SCARF2	20p-Amp	0.793	1
SHANK1	Amp_1q23.3	0.793	1
UNC93B1	Amp_19q12	0.793	1
20p-Amp	19p-Del	0.793	1
5p-Amp	Del_8p23.3	0.793	1
11q-Del	Amp_17q12	0.793	1
16p-Del	Del_14q24.1	0.793	1
Amp_11q22.2	Del_14q24.1	0.793	1
DNAH6	Del_14q24.1	0.794	1
NF2	5p-Amp	0.794	1
SF1	5p-Amp	0.794	1
TXNIP	18q-Del	0.794	1
TXNIP	Del_14q24.1	0.794	1
17p-Del	Amp_13q22.1	0.794	1
Amp_13q22.1	Del_4q22.1	0.794	1
Del_4q22.1	Del_6p25.3	0.794	1
ERBB2	KRAS	0.795	1
HES1	19p-Del	0.795	1
KRAS	Amp_19q12	0.795	1
SCARF2	ZBTB7B	0.795	1
SCARF2	Amp_6q21	0.795	1
ZBTB7B	19p-Del	0.795	1
7p-Amp	14q-Del	0.795	1
7p-Amp	4p-Del	0.795	1
19p-Del	Amp_6q21	0.795	1
CNOT1	8q-Amp	0.796	1
CSMD3	Del_4q34.2	0.796	1
FAM47C	8q-Amp	0.796	1
PIK3CA	ZBTB7B	0.796	1
PSIP1	Amp_16p13.2	0.796	1
RAI1	Del_18q23	0.796	1
RBM10	8q-Amp	0.796	1
STAG2	Del_4q34.2	0.796	1
ZNF185	Amp_10p14	0.796	1
15q-Del	Amp_20q11.21	0.796	1
ASXL2	5p-Amp	0.797	1
FBXW7	Del_15q13.1	0.797	1
PARD3	19q-Amp	0.797	1
PARD3	Amp_4q13.3	0.797	1
PARD3	Del_7q36.3	0.797	1
PIK3CA	Del_6q27	0.797	1
RAI1	Del_11p15.5	0.797	1
RPTN	Del_12p13.1	0.797	1
5p-Amp	Amp_17q12	0.797	1
Amp_4p16.3	Amp_8p11.21	0.797	1
Del_7q36.3	Del_12p13.1	0.797	1
CDKN2A	EP300	0.798	1
NF2	TSC1	0.798	1
RHOB	11p-Del	0.798	1
SF1	TSC1	0.798	1
THRAP3	TP53	0.798	1
Amp_20q11.21	Del_13q14.2	0.798	1
ARID1A	ERCC2	0.799	1
ARID1A	7q-Amp	0.799	1
ARID1A	15q-Del	0.799	1
CREBBP	5p-Amp	0.799	1
ERCC2	Amp_5p15.33	0.799	1
KDM6A	Amp_1q21.3	0.799	1
PSIP1	Amp_5p15.33	0.799	1
ZFP36L1	20q-Amp	0.799	1
ZFP36L1	Del_11q23.3	0.799	1
3q-Amp	18q-Del	0.799	1
7q-Amp	Amp_5p15.33	0.799	1
Amp_13q22.1	Del_17p12	0.799	1
Amp_22q12.2	Del_11q23.3	0.799	1
CREBBP	NRAS	0.8	1
CREBBP	NUDT11	0.8	1
CREBBP	UNC93B1	0.8	1
CUL1	ZNF185	0.8	1
FBXW7	Amp_12q15	0.8	1
FOXA1	Amp_7p11.2	0.8	1
HLA-A	Amp_7p21.1	0.8	1
METTL3	ZNF185	0.8	1
METTL3	Del_17p12	0.8	1
MLL3	9q-Del	0.8	1
NUDT11	Del_11q25	0.8	1
PTEN	Amp_7p11.2	0.8	1
SPTAN1	1q-Amp	0.8	1
THRAP3	Amp_7p11.2	0.8	1
UNC93B1	Del_11q25	0.8	1
ZFP36L1	Amp_3p25.2	0.8	1
ZNF185	3p-Amp	0.8	1
Amp_1p34.2	Amp_13q22.1	0.8	1
ERBB3	19q-Amp	0.801	1
ERBB3	Amp_4q13.3	0.801	1
FAM47C	SPTAN1	0.801	1
MLL2	TP53	0.801	1
PIK3CA	Del_2q34	0.801	1
8q-Amp	11p-Del	0.801	1
11p-Del	Del_4q22.1	0.801	1
18q-Del	Amp_8p11.21	0.801	1
18q-Del	Del_2q22.1	0.801	1
Amp_16p13.2	Del_2q37.1	0.801	1
Amp_17q23.3	Del_2q22.1	0.801	1
Del_2q22.1	Del_14q24.1	0.801	1
ATM	Del_2q22.1	0.802	1
BCL2L1	CNOT1	0.802	1
BCL2L1	RAI1	0.802	1
CSMD3	ZBTB7B	0.802	1
CUL1	Amp_17q12	0.802	1
FGFR3	HES1	0.802	1
KRAS	ZFP36L1	0.802	1
METTL3	Amp_17q12	0.802	1
STAG2	ZBTB7B	0.802	1
STAG2	Amp_6q21	0.802	1
TXNIP	Amp_8q22.3	0.802	1
8p-Del	Amp_1p34.2	0.802	1
Amp_1q23.3	Del_11q25	0.802	1
Amp_5p15.33	Del_2q22.1	0.802	1
Amp_6q21	Del_16p13.3	0.802	1
ASXL2	ATM	0.803	1
CTNNB1	PLCXD3	0.803	1
ELF3	7q-Amp	0.803	1
FOXA1	PLCXD3	0.803	1
GNA13	HLA-A	0.803	1
GNA13	NRAS	0.803	1
GNA13	NUDT11	0.803	1
GNA13	14q-Del	0.803	1
HLA-A	MBD1	0.803	1
HLA-A	TMCO4	0.803	1
HLA-A	17q-Amp	0.803	1
HLA-A	Del_1q32.1	0.803	1
HLA-A	Del_Xq21.33	0.803	1
MBD1	NRAS	0.803	1
MBD1	NUDT11	0.803	1
MBD1	UNC93B1	0.803	1
MBD1	14q-Del	0.803	1
NRAS	TMCO4	0.803	1
NRAS	17q-Amp	0.803	1
NRAS	Del_1q32.1	0.803	1
NRAS	Del_Xq21.33	0.803	1
NUDT11	17q-Amp	0.803	1
NUDT11	Del_1q32.1	0.803	1
NUDT11	Del_Xq21.33	0.803	1
PLCXD3	PTEN	0.803	1
PLCXD3	THRAP3	0.803	1
PLCXD3	1q-Amp	0.803	1
PLCXD3	Del_1p36.11	0.803	1
PSIP1	Amp_17q23.3	0.803	1
PSIP1	Del_3p14.2	0.803	1
TP53	Amp_22q12.2	0.803	1
UNC93B1	17q-Amp	0.803	1
UNC93B1	Del_1q32.1	0.803	1
UNC93B1	Del_Xq21.33	0.803	1
17q-Amp	14q-Del	0.803	1
20q-Amp	8p-Del	0.803	1
7p-Amp	Amp_11q13.3	0.803	1
7q-Amp	Del_3p14.2	0.803	1
14q-Del	Del_Xq21.33	0.803	1
15q-Del	Amp_17q23.3	0.803	1
4p-Del	Amp_19q13.43	0.803	1
4p-Del	Del_Xq21.33	0.803	1
8p-Del	Del_11q23.3	0.803	1
Amp_11q22.2	Amp_20q11.21	0.803	1
Amp_17q12	Del_4q34.2	0.803	1
C3orf70	Amp_4p16.3	0.804	1
CNOT1	FBXW7	0.804	1
CUL1	Amp_4p16.3	0.804	1
GNA13	Del_2q34	0.804	1
IDH1	Amp_17q12	0.804	1
RUNX1	Amp_5p15.33	0.804	1
17q-Amp	Del_2q34	0.804	1
6q-Del	Del_2q22.1	0.804	1
Amp_3q26.33	Amp_8q22.3	0.804	1
Amp_8p11.23	Del_9p21.3	0.804	1
Amp_17q23.3	Del_13q14.2	0.804	1
Amp_19q12	Del_10q23.31	0.804	1
Del_2q34	Del_Xq21.33	0.804	1
ARID1B	CTNNB1	0.805	1
ARID1B	THRAP3	0.805	1
ARID1B	1q-Amp	0.805	1
C3orf70	Amp_11q13.3	0.805	1
C3orf70	Del_8p21.3	0.805	1
C3orf70	Del_10q23.31	0.805	1
EP300	Del_10q23.31	0.805	1
ERCC2	TXNIP	0.805	1
FAT1	MLL3	0.805	1
FGFR3	Amp_19q13.43	0.805	1
FOXQ1	KLF5	0.805	1
FOXQ1	7p-Amp	0.805	1
FOXQ1	4q-Del	0.805	1
KLF5	THRAP3	0.805	1
KLF5	1q-Amp	0.805	1
METTL3	Del_10q23.31	0.805	1
PSIP1	Del_8p21.3	0.805	1
PTEN	7p-Amp	0.805	1
PTEN	4q-Del	0.805	1
THRAP3	4q-Del	0.805	1
3q-Amp	Amp_4p16.3	0.805	1
8q-Amp	Del_2q22.1	0.805	1
17p-Del	Amp_11q13.3	0.805	1
Del_2q22.1	Del_18q23	0.805	1
BCL2L1	Amp_1q21.3	0.806	1
ERBB2	Del_11p15.5	0.806	1
MLL2	Amp_17q12	0.806	1
PLCXD3	Amp_3q26.33	0.806	1
PLCXD3	Del_10q23.31	0.806	1
RB1	20p-Amp	0.806	1
SCARF2	Amp_3p25.2	0.806	1
14q-Del	Del_9p21.3	0.806	1
4p-Del	Del_9p21.3	0.806	1
Amp_1p34.2	Del_10q23.31	0.806	1
Del_1q32.1	Del_9p21.3	0.806	1
CNNM4	6q-Del	0.807	1
CNNM4	Del_15q13.1	0.807	1
DNAH6	15q-Del	0.807	1
ELF3	HLA-A	0.807	1
ELF3	NRAS	0.807	1
ERCC2	KIAA1267	0.807	1
ERCC2	22q-Del	0.807	1
HLA-A	Amp_17q23.3	0.807	1
HRAS	PSIP1	0.807	1
KIAA1267	Amp_1q23.3	0.807	1
NF2	6q-Del	0.807	1
NRAS	Del_3p14.2	0.807	1
PSIP1	TXNIP	0.807	1
RB1	Del_4q22.1	0.807	1
RHOB	11q-Del	0.807	1
RXRA	Amp_1q23.3	0.807	1
SF1	10q-Del	0.807	1
SF1	Del_15q13.1	0.807	1
TMCO4	Amp_3p25.2	0.807	1
TXNIP	7q-Amp	0.807	1
UNC93B1	Amp_17q23.3	0.807	1
17q-Amp	Amp_3p25.2	0.807	1
22q-Del	Amp_1q23.3	0.807	1
9q-Del	Amp_8p11.23	0.807	1
9q-Del	Del_16p13.3	0.807	1
Amp_1q23.3	Amp_11q22.2	0.807	1
Del_1p36.11	Del_8p21.3	0.807	1
ATM	KDM6A	0.808	1
C3orf70	MLL3	0.808	1
CUL1	MLL3	0.808	1
FBXW7	HES1	0.808	1
FBXW7	ZBTB7B	0.808	1
FGFR3	Del_12p13.1	0.808	1
KDM6A	Del_14q24.1	0.808	1
MLL	SPTAN1	0.808	1
MLL3	3p-Amp	0.808	1
RPTN	17p-Del	0.808	1
11p-Del	Amp_4q13.3	0.808	1
16p-Del	Del_17p12	0.808	1
17p-Del	Amp_4q13.3	0.808	1
Amp_8p11.23	Del_12p13.1	0.808	1
Amp_10p14	Del_2q22.1	0.808	1
CDKN2A	Del_18q23	0.809	1
ERBB2	11p-Del	0.809	1
HLA-A	Del_9p23	0.809	1
NRAS	Del_9p23	0.809	1
RB1	Del_15q13.1	0.809	1
RHOB	Del_18q23	0.809	1
3q-Amp	9p-Del	0.809	1
8q-Amp	Amp_13q22.1	0.809	1
10q-Del	9p-Del	0.809	1
11p-Del	Amp_19q12	0.809	1
ASXL2	Amp_19q13.43	0.81	1
BCL2L1	15q-Del	0.81	1
BCL2L1	Amp_6p22.3	0.81	1
CDKN1A	Del_19p13.3	0.81	1
CDKN2A	Del_2q37.1	0.81	1
CSMD3	Del_3p14.2	0.81	1
CTNNB1	MLL	0.81	1
CTNNB1	Amp_12q15	0.81	1
CTNNB1	Del_6p25.3	0.81	1
ELF3	FGFR3	0.81	1
ELF3	STAG2	0.81	1
FGFR3	Amp_17q23.3	0.81	1
FOXA1	MLL	0.81	1
FOXA1	Amp_13q22.1	0.81	1
FOXA1	Del_6p25.3	0.81	1
FOXQ1	MLL	0.81	1
FOXQ1	Amp_13q22.1	0.81	1
KIAA1267	ZFP36L1	0.81	1
KIAA1267	Amp_22q12.2	0.81	1
MLL	PTEN	0.81	1
MLL	1q-Amp	0.81	1
NFE2L2	Del_5q12.1	0.81	1
PKHD1	17p-Del	0.81	1
PTEN	Amp_13q22.1	0.81	1
THRAP3	Amp_13q22.1	0.81	1
11p-Del	Amp_16p13.2	0.81	1
17p-Del	Amp_16p13.2	0.81	1
5q-Del	Amp_11q13.3	0.81	1
Amp_8p11.23	Amp_17q23.3	0.81	1
Amp_17q12	Amp_19q13.43	0.81	1
Del_1p36.11	Del_6p25.3	0.81	1
ARID1B	CDKN2A	0.811	1
CDKN2A	KLF5	0.811	1
CDKN2A	7p-Amp	0.811	1
CNOT1	Amp_4q13.3	0.811	1
DNAH6	ZNF185	0.811	1
ERBB3	Amp_17q23.3	0.811	1
FAM47C	RPTN	0.811	1
FAM47C	Del_7q36.3	0.811	1
HRAS	ZNF185	0.811	1
KLF5	RHOB	0.811	1
MLL2	Amp_8q22.3	0.811	1
RAI1	RPTN	0.811	1
RAI1	Amp_4q13.3	0.811	1
RAI1	Del_7q36.3	0.811	1
RBM10	19q-Amp	0.811	1
TXNIP	ZNF185	0.811	1
ZFP36L1	Amp_8p11.21	0.811	1
ARID1B	TP53	0.812	1
ASXL2	Amp_13q22.1	0.812	1
ASXL2	Del_6p25.3	0.812	1
ASXL2	Del_16q23.1	0.812	1
ATM	PLCXD3	0.812	1
CNNM4	19p-Del	0.812	1
CNOT1	MLL	0.812	1
FAM47C	Del_16q23.1	0.812	1
FAT1	Amp_16p13.2	0.812	1
FOXA1	Del_5q12.1	0.812	1
FOXQ1	Del_5q12.1	0.812	1
IDH1	11q-Del	0.812	1
IDH1	Del_19p13.3	0.812	1
KDM6A	3q-Amp	0.812	1
NF2	SCARF2	0.812	1
NF2	19p-Del	0.812	1
PTEN	Del_5q12.1	0.812	1
RB1	14q-Del	0.812	1
RBM10	Del_16q23.1	0.812	1
RHOB	Del_6q27	0.812	1
RHOB	Del_11q25	0.812	1
SCARF2	SF1	0.812	1
SF1	19p-Del	0.812	1
19p-Del	Del_11p15.5	0.812	1
Amp_17q12	Del_6p25.3	0.812	1
ASXL2	Amp_22q12.2	0.813	1
CDKN2A	PIK3CA	0.813	1
ELF3	KRAS	0.813	1
ELF3	Del_Xp11.3	0.813	1
FAT1	MBD1	0.813	1
FAT1	17q-Amp	0.813	1
FOXA1	Del_9p21.3	0.813	1
MBD1	20q-Amp	0.813	1
PKHD1	Amp_1p34.2	0.813	1
RUNX1	Del_3p14.2	0.813	1
17q-Amp	20q-Amp	0.813	1
1q-Amp	Del_9p21.3	0.813	1
17p-Del	Amp_3p25.2	0.813	1
Amp_1p34.2	Amp_16p13.2	0.813	1
Amp_1p34.2	Del_22q13.32	0.813	1
Del_3p14.2	Del_Xp11.3	0.813	1
ATM	7p-Amp	0.814	1
C3orf70	CDKN1A	0.814	1
CDKN1A	CUL1	0.814	1
CDKN1A	METTL3	0.814	1
CNNM4	8q-Amp	0.814	1
KIAA1267	RUNX1	0.814	1
KRAS	NFE2L2	0.814	1
KRAS	16p-Del	0.814	1
KRAS	Amp_11q22.2	0.814	1
MBD1	Del_11p15.5	0.814	1
METTL3	11q-Del	0.814	1
METTL3	5q-Del	0.814	1
PARD3	4p-Del	0.814	1
RUNX1	RXRA	0.814	1
RUNX1	Amp_11q22.2	0.814	1
RXRA	Del_Xp11.3	0.814	1
SF1	8q-Amp	0.814	1
SF1	Del_18q23	0.814	1
8q-Amp	Del_4q22.1	0.814	1
22q-Del	Del_Xp11.3	0.814	1
Amp_11q22.2	Del_Xp11.3	0.814	1
CDKN2A	17q-Amp	0.815	1
CUL1	Del_4q34.2	0.815	1
EP300	PSIP1	0.815	1
GNA13	RHOB	0.815	1
MBD1	RHOB	0.815	1
MBD1	TP53	0.815	1
METTL3	Del_4q34.2	0.815	1
RB1	Amp_1q23.3	0.815	1
RHOB	Del_Xq21.33	0.815	1
RPTN	Amp_1q21.3	0.815	1
SPTAN1	11q-Del	0.815	1
19q-Amp	Amp_1q21.3	0.815	1
7p-Amp	18q-Del	0.815	1
7p-Amp	Del_14q24.1	0.815	1
ASXL2	Amp_6p22.3	0.816	1
ERBB2	Del_14q24.1	0.816	1
ERCC2	PIK3CA	0.816	1
KRAS	PLCXD3	0.816	1
PLCXD3	RUNX1	0.816	1
1q-Amp	Del_9p23	0.816	1
18q-Del	19p-Del	0.816	1
18q-Del	Amp_19q12	0.816	1
Amp_17q12	Del_8p23.3	0.816	1
ARID1B	Amp_1q21.3	0.817	1
CNNM4	PKHD1	0.817	1
CREBBP	Amp_7p21.1	0.817	1
ERBB2	10q-Del	0.817	1
ERBB2	Amp_17q23.3	0.817	1
RPTN	8q-Amp	0.817	1
RPTN	Del_18q23	0.817	1
SF1	Amp_16p13.2	0.817	1
TP53	ZNF185	0.817	1
8q-Amp	Amp_4q13.3	0.817	1
8q-Amp	Del_7q36.3	0.817	1
10q-Del	Amp_19q12	0.817	1
Amp_3q26.33	Amp_6q21	0.817	1
Amp_19q12	Del_3p14.2	0.817	1
Del_7q36.3	Del_18q23	0.817	1
ARID1B	Amp_5p15.33	0.818	1
ASXL2	TP53	0.818	1
CREBBP	Amp_4p16.3	0.818	1
CTNNB1	Del_12p13.1	0.818	1
DNAH6	FGFR3	0.818	1
DNAH6	Del_16p13.3	0.818	1
FOXA1	PARD3	0.818	1
FOXA1	Del_12p13.1	0.818	1
FOXQ1	Del_12p13.1	0.818	1
HES1	NRAS	0.818	1
HES1	NUDT11	0.818	1
HES1	UNC93B1	0.818	1
HLA-A	ZBTB7B	0.818	1
HRAS	STAG2	0.818	1
KDM6A	TMCO4	0.818	1
KDM6A	Del_Xq21.33	0.818	1
MLL2	20p-Amp	0.818	1
NRAS	ZBTB7B	0.818	1
NUDT11	ZBTB7B	0.818	1
NUDT11	Amp_6q21	0.818	1
PIK3CA	TP53	0.818	1
PTEN	Del_12p13.1	0.818	1
SPTAN1	Amp_1q21.3	0.818	1
TP53	Amp_17q12	0.818	1
UNC93B1	ZBTB7B	0.818	1
UNC93B1	Amp_6q21	0.818	1
Amp_1p34.2	Del_4q34.2	0.818	1
Amp_4p16.3	Del_6q27	0.818	1
Del_1p36.11	Del_12p13.1	0.818	1
BCL2L1	Amp_4p16.3	0.819	1
CDKN1A	MLL3	0.819	1
FOXA1	20p-Amp	0.819	1
FOXQ1	20p-Amp	0.819	1
HLA-A	PIK3CA	0.819	1
KDM6A	ZFP36L1	0.819	1
KDM6A	Amp_22q12.2	0.819	1
MLL2	1q-Amp	0.819	1
MLL3	Del_19p13.3	0.819	1
20p-Amp	Del_1p36.11	0.819	1
Amp_16p13.2	Del_17p12	0.819	1
Del_1p36.11	Del_22q13.32	0.819	1
C3orf70	RHOA	0.82	1
FOXA1	Del_13q14.2	0.82	1
FOXQ1	Del_13q14.2	0.82	1
HLA-A	SPTAN1	0.82	1
METTL3	RHOA	0.82	1
MLL2	PSIP1	0.82	1
MLL2	15q-Del	0.82	1
NF1	Del_2q34	0.82	1
NRAS	SPTAN1	0.82	1
RHOA	3p-Amp	0.82	1
SHANK1	3p-Amp	0.82	1
SPTAN1	20q-Amp	0.82	1
Amp_11q13.3	Del_18q23	0.82	1
Amp_19q12	Del_4q34.2	0.82	1
ELF3	PIK3CA	0.821	1
HES1	Amp_1q21.3	0.821	1
MBD1	Del_2q22.1	0.821	1
NF1	Amp_1q23.3	0.821	1
PSIP1	Amp_3p25.2	0.821	1
19q-Amp	Del_14q24.1	0.821	1
Amp_4q13.3	Del_14q24.1	0.821	1
Del_1q32.1	Del_2q22.1	0.821	1
ATM	EP300	0.822	1
DNAH6	Amp_4p16.3	0.822	1
ERBB2	Amp_22q12.2	0.822	1
FBXW7	Del_11p15.5	0.822	1
RPTN	ZNF185	0.822	1
TXNIP	Amp_4p16.3	0.822	1
ZNF185	19q-Amp	0.822	1
ZNF185	Amp_4q13.3	0.822	1
ZNF185	Del_7q36.3	0.822	1
7q-Amp	Del_17p12	0.822	1
Amp_1q21.3	Del_9p23	0.822	1
Amp_6p22.3	Del_7q36.3	0.822	1
ASXL2	EP300	0.823	1
CNOT1	MLL3	0.823	1
ERCC2	SCARF2	0.823	1
ERCC2	19p-Del	0.823	1
FAM47C	20p-Amp	0.823	1
FAT1	KIAA1267	0.823	1
FBXW7	PSIP1	0.823	1
FBXW7	Del_9p23	0.823	1
RXRA	20q-Amp	0.823	1
SHANK1	Amp_10p14	0.823	1
ZNF185	Amp_8q22.3	0.823	1
20q-Amp	16p-Del	0.823	1
11p-Del	Amp_17q12	0.823	1
Amp_3q26.33	Del_2q37.1	0.823	1
Amp_4p16.3	Amp_6p22.3	0.823	1
Amp_19q12	Del_18q23	0.823	1
CDKN2A	ELF3	0.824	1
CDKN2A	Amp_17q23.3	0.824	1
EP300	Amp_22q12.2	0.824	1
PSIP1	8q-Amp	0.824	1
RHOA	Amp_8p11.21	0.824	1
RHOB	Amp_17q23.3	0.824	1
SCARF2	Del_8p21.3	0.824	1
7q-Amp	Del_18q23	0.824	1
11p-Del	Amp_22q12.2	0.824	1
8p-Del	9q-Del	0.824	1
Amp_1q23.3	Del_2q37.1	0.824	1
Amp_8p11.21	Amp_16p13.2	0.824	1
C3orf70	Amp_19q13.43	0.825	1
C3orf70	Del_8p23.3	0.825	1
CUL1	Del_8p23.3	0.825	1
ERBB2	Amp_1q21.3	0.825	1
FOXQ1	Del_8p23.3	0.825	1
KDM6A	9p-Del	0.825	1
METTL3	Amp_19q13.43	0.825	1
METTL3	Del_8p23.3	0.825	1
PSIP1	SPTAN1	0.825	1
PTEN	Del_8p23.3	0.825	1
SPTAN1	Del_22q13.32	0.825	1
20p-Amp	Amp_7p11.2	0.825	1
9q-Del	Del_8p23.3	0.825	1
Amp_6q21	Del_4q34.2	0.825	1
Amp_12q15	Amp_13q22.1	0.825	1
Del_1p36.11	Del_8p23.3	0.825	1
ARID1A	Amp_19q12	0.826	1
EP300	ZNF185	0.826	1
ERBB3	Amp_1p34.2	0.826	1
GNA13	ZFP36L1	0.826	1
KDM6A	RPTN	0.826	1
KDM6A	19q-Amp	0.826	1
KIAA1267	16p-Del	0.826	1
NF1	NF2	0.826	1
PSIP1	RPTN	0.826	1
PSIP1	19q-Amp	0.826	1
PSIP1	Del_7q36.3	0.826	1
RHOA	10q-Del	0.826	1
RXRA	16p-Del	0.826	1
RXRA	22q-Del	0.826	1
SHANK1	10q-Del	0.826	1
SHANK1	6q-Del	0.826	1
STAG2	Del_14q24.1	0.826	1
TMCO4	Amp_22q12.2	0.826	1
TP53	Del_2q34	0.826	1
ZNF185	11p-Del	0.826	1
ZNF185	17p-Del	0.826	1
7q-Amp	Del_7q36.3	0.826	1
11q-Del	Amp_22q12.2	0.826	1
Amp_22q12.2	Del_1q32.1	0.826	1
ARID1A	Del_4q22.1	0.827	1
ARID1B	KRAS	0.827	1
ASXL2	HRAS	0.827	1
ASXL2	TXNIP	0.827	1
DNAH6	Amp_17q12	0.827	1
ERCC2	KLF5	0.827	1
HLA-A	Amp_12q15	0.827	1
HLA-A	Del_16q23.1	0.827	1
KRAS	4q-Del	0.827	1
MLL	NRAS	0.827	1
NF1	Del_2q37.1	0.827	1
NUDT11	Amp_13q22.1	0.827	1
PSIP1	Del_8p23.3	0.827	1
RUNX1	4q-Del	0.827	1
TXNIP	Amp_17q12	0.827	1
UNC93B1	Del_6p25.3	0.827	1
UNC93B1	Del_16q23.1	0.827	1
4p-Del	Amp_7p11.2	0.827	1
4q-Del	Del_Xp11.3	0.827	1
9p-Del	Amp_17q23.3	0.827	1
Amp_5p15.33	Del_4q22.1	0.827	1
Amp_7p21.1	Del_11p15.5	0.827	1
BCL2L1	SHANK1	0.828	1
CDKN2A	PARD3	0.828	1
CSMD3	4p-Del	0.828	1
ERBB2	MBD1	0.828	1
ERBB2	Del_1q32.1	0.828	1
ERBB2	Del_Xq21.33	0.828	1
FGFR3	14q-Del	0.828	1
MBD1	Amp_19q12	0.828	1
MLL3	19p-Del	0.828	1
SCARF2	Del_2q37.1	0.828	1
STAG2	14q-Del	0.828	1
7p-Amp	8p-Del	0.828	1
4p-Del	Amp_8p11.23	0.828	1
Amp_1q23.3	Del_16p13.3	0.828	1
Amp_4p16.3	Amp_17q23.3	0.828	1
Amp_4p16.3	Del_3p14.2	0.828	1
Amp_19q12	Del_1q32.1	0.828	1
Amp_19q12	Del_Xq21.33	0.828	1
BCL2L1	Del_11p15.5	0.829	1
CTNNB1	ERBB3	0.829	1
ERBB3	PTEN	0.829	1
ERBB3	THRAP3	0.829	1
ERBB3	1q-Amp	0.829	1
ERBB3	Del_4q34.2	0.829	1
FAT1	PLCXD3	0.829	1
GNA13	PLCXD3	0.829	1
IDH1	SCARF2	0.829	1
MBD1	PLCXD3	0.829	1
NF1	Amp_1p34.2	0.829	1
PIK3CA	THRAP3	0.829	1
PLCXD3	TMCO4	0.829	1
PLCXD3	17q-Amp	0.829	1
PLCXD3	Del_1q32.1	0.829	1
PLCXD3	Del_11q23.3	0.829	1
PLCXD3	Del_Xq21.33	0.829	1
ZBTB7B	4p-Del	0.829	1
19q-Amp	Amp_20q11.21	0.829	1
7p-Amp	Del_8p23.3	0.829	1
4p-Del	Amp_6q21	0.829	1
Amp_11q13.3	Del_4q34.2	0.829	1
Del_10q23.31	Del_12p13.1	0.829	1
CDKN1A	Amp_12q15	0.83	1
CNOT1	Amp_8q22.3	0.83	1
KIAA1267	Amp_3p25.2	0.83	1
MLL	Del_19p13.3	0.83	1
RXRA	5p-Amp	0.83	1
RXRA	Amp_3p25.2	0.83	1
TP53	6q-Del	0.83	1
ZNF185	8q-Amp	0.83	1
ZNF185	Del_18q23	0.83	1
11q-Del	Del_6p25.3	0.83	1
16p-Del	Amp_3p25.2	0.83	1
22q-Del	Amp_3p25.2	0.83	1
5q-Del	Amp_1q21.3	0.83	1
Amp_3p25.2	Amp_11q22.2	0.83	1
C3orf70	RB1	0.831	1
CNOT1	FOXQ1	0.831	1
CNOT1	PTEN	0.831	1
CNOT1	Del_1p36.11	0.831	1
CTNNB1	RAI1	0.831	1
ERCC2	RPTN	0.831	1
FAM47C	1q-Amp	0.831	1
FAM47C	Del_1p36.11	0.831	1
FOXA1	RBM10	0.831	1
FOXQ1	RBM10	0.831	1
PTEN	RAI1	0.831	1
RAI1	Del_1p36.11	0.831	1
RBM10	THRAP3	0.831	1
19p-Del	Del_4q22.1	0.831	1
ASXL2	NFE2L2	0.832	1
ASXL2	16p-Del	0.832	1
CNOT1	14q-Del	0.832	1
IDH1	Del_13q14.2	0.832	1
NF1	Del_11q23.3	0.832	1
16p-Del	Amp_17q12	0.832	1
Amp_3p25.2	Del_18q23	0.832	1
CNNM4	HLA-A	0.833	1
CNNM4	NRAS	0.833	1
CNNM4	NUDT11	0.833	1
CNNM4	UNC93B1	0.833	1
CNNM4	Amp_8q22.3	0.833	1
CREBBP	ELF3	0.833	1
CTNNB1	ZNF185	0.833	1
FOXA1	ZNF185	0.833	1
FOXQ1	ZNF185	0.833	1
GNA13	Del_2q37.1	0.833	1
HLA-A	NF2	0.833	1
HLA-A	SF1	0.833	1
MLL2	10q-Del	0.833	1
MLL2	Del_15q13.1	0.833	1
NF1	17p-Del	0.833	1
NF2	NRAS	0.833	1
NF2	NUDT11	0.833	1
NUDT11	SF1	0.833	1
PTEN	ZNF185	0.833	1
SF1	UNC93B1	0.833	1
THRAP3	ZNF185	0.833	1
ZFP36L1	Del_11q25	0.833	1
ZNF185	1q-Amp	0.833	1
ZNF185	Del_1p36.11	0.833	1
ARID1A	SPTAN1	0.834	1
CNOT1	ERBB3	0.834	1
ERBB3	17p-Del	0.834	1
ERCC2	Amp_19q12	0.834	1
HLA-A	Del_22q13.32	0.834	1
KDM6A	8p-Del	0.834	1
NRAS	20p-Amp	0.834	1
NUDT11	Del_22q13.32	0.834	1
SHANK1	Amp_19q12	0.834	1
CNOT1	Amp_8p11.23	0.835	1
CSMD3	RAI1	0.835	1
MLL	PSIP1	0.835	1
MLL	7q-Amp	0.835	1
NF1	Del_14q24.1	0.835	1
PKHD1	Amp_6p22.3	0.835	1
RAI1	Del_16p13.3	0.835	1
RBM10	Amp_8p11.23	0.835	1
RBM10	Del_16p13.3	0.835	1
RHOB	TSC1	0.835	1
TXNIP	Amp_3q26.33	0.835	1
TXNIP	Amp_11q13.3	0.835	1
TXNIP	Del_10q23.31	0.835	1
7q-Amp	Amp_13q22.1	0.835	1
15q-Del	Amp_12q15	0.835	1
15q-Del	Amp_13q22.1	0.835	1
18q-Del	Amp_1q21.3	0.835	1
C3orf70	TSC1	0.836	1
CNNM4	FBXW7	0.836	1
CNNM4	Amp_1p34.2	0.836	1
CREBBP	GNA13	0.836	1
CREBBP	MBD1	0.836	1
CREBBP	Del_1q32.1	0.836	1
CUL1	3p-Amp	0.836	1
ELF3	Amp_3p25.2	0.836	1
FBXW7	SF1	0.836	1
MBD1	Del_11q25	0.836	1
METTL3	3p-Amp	0.836	1
TMCO4	Amp_7p21.1	0.836	1
TMCO4	Del_6q27	0.836	1
17q-Amp	Amp_7p21.1	0.836	1
17q-Amp	Del_6q27	0.836	1
17q-Amp	Del_11q25	0.836	1
Amp_3p25.2	Amp_17q23.3	0.836	1
ARID1B	Del_5q12.1	0.837	1
ATM	8q-Amp	0.837	1
BCL2L1	C3orf70	0.837	1
BCL2L1	CUL1	0.837	1
BCL2L1	METTL3	0.837	1
BCL2L1	3p-Amp	0.837	1
CDKN1A	HRAS	0.837	1
DNAH6	RHOA	0.837	1
DNAH6	SHANK1	0.837	1
ERBB2	Amp_16p13.2	0.837	1
GNA13	NFE2L2	0.837	1
GNA13	RXRA	0.837	1
GNA13	16p-Del	0.837	1
GNA13	22q-Del	0.837	1
HRAS	RHOA	0.837	1
HRAS	SHANK1	0.837	1
MBD1	22q-Del	0.837	1
MBD1	Amp_11q22.2	0.837	1
RXRA	TMCO4	0.837	1
RXRA	Del_Xq21.33	0.837	1
TMCO4	Amp_11q22.2	0.837	1
17q-Amp	Amp_11q22.2	0.837	1
20q-Amp	Amp_12q15	0.837	1
20q-Amp	Del_16q23.1	0.837	1
8q-Amp	Del_4q34.2	0.837	1
Amp_1p34.2	Del_8p23.3	0.837	1
Amp_1q23.3	Del_1p36.11	0.837	1
Amp_1q23.3	Del_2q22.1	0.837	1
Amp_11q22.2	Del_1q32.1	0.837	1
Amp_11q22.2	Del_Xq21.33	0.837	1
Amp_12q15	Del_11q23.3	0.837	1
Del_6p25.3	Del_11q23.3	0.837	1
ERCC2	Del_14q24.1	0.838	1
HES1	Amp_1q23.3	0.838	1
IDH1	3q-Amp	0.838	1
IDH1	10q-Del	0.838	1
IDH1	Del_15q13.1	0.838	1
MLL2	Amp_3p25.2	0.838	1
NRAS	Amp_1q21.3	0.838	1
PARD3	Del_4q34.2	0.838	1
PKHD1	RHOA	0.838	1
TSC1	Amp_5p15.33	0.838	1
UNC93B1	Amp_1q21.3	0.838	1
Amp_20q11.21	Del_4q34.2	0.838	1
ARID1A	8p-Del	0.839	1
CDKN2A	HES1	0.839	1
CDKN2A	ZBTB7B	0.839	1
CDKN2A	Amp_6q21	0.839	1
HES1	RHOB	0.839	1
KIAA1267	Del_11p15.5	0.839	1
KRAS	PARD3	0.839	1
KRAS	Del_12p13.1	0.839	1
KRAS	Del_16q23.1	0.839	1
PARD3	RUNX1	0.839	1
RHOB	ZBTB7B	0.839	1
RHOB	9p-Del	0.839	1
RUNX1	Del_6p25.3	0.839	1
4p-Del	Amp_13q22.1	0.839	1
Amp_6q21	Del_2q34	0.839	1
ERBB2	PLCXD3	0.84	1
ERBB3	NRAS	0.84	1
ERBB3	NUDT11	0.84	1
PLCXD3	Amp_19q12	0.84	1
RPTN	Del_4q22.1	0.84	1
20p-Amp	Amp_13q22.1	0.84	1
8p-Del	Del_13q14.2	0.84	1
Amp_4p16.3	Amp_4q13.3	0.84	1
Amp_4q13.3	Del_4q22.1	0.84	1
Amp_6p22.3	Del_19p13.3	0.84	1
Amp_12q15	Del_22q13.32	0.84	1
BCL2L1	Del_2q37.1	0.841	1
CNNM4	FGFR3	0.841	1
CNNM4	STAG2	0.841	1
CNNM4	Del_16p13.3	0.841	1
CREBBP	8q-Amp	0.841	1
CSMD3	NF2	0.841	1
ERBB3	Amp_7p11.2	0.841	1
FGFR3	SF1	0.841	1
IDH1	Amp_5p15.33	0.841	1
KIAA1267	7p-Amp	0.841	1
KLF5	22q-Del	0.841	1
MLL3	Del_4q34.2	0.841	1
RXRA	4q-Del	0.841	1
SF1	Amp_8p11.23	0.841	1
TSC1	Del_19p13.3	0.841	1
8q-Amp	Del_6q27	0.841	1
6q-Del	Amp_10p14	0.841	1
8p-Del	Amp_19q12	0.841	1
Amp_7p21.1	Del_18q23	0.841	1
ASXL2	FAT1	0.842	1
C3orf70	Del_11q23.3	0.842	1
CUL1	FAT1	0.842	1
EP300	FOXA1	0.842	1
EP300	Del_1p36.11	0.842	1
FAT1	METTL3	0.842	1
FAT1	Amp_17q12	0.842	1
FOXA1	17p-Del	0.842	1
HES1	PLCXD3	0.842	1
HLA-A	Amp_6p22.3	0.842	1
METTL3	Del_9p23	0.842	1
SPTAN1	Amp_20q11.21	0.842	1
SPTAN1	Del_13q14.2	0.842	1
THRAP3	17p-Del	0.842	1
TXNIP	Del_2q37.1	0.842	1
UNC93B1	Amp_6p22.3	0.842	1
11p-Del	Del_1p36.11	0.842	1
Amp_11q13.3	Del_5q12.1	0.842	1
Amp_19q13.43	Del_2q37.1	0.842	1
ASXL2	3q-Amp	0.843	1
ATM	DNAH6	0.843	1
PARD3	ZFP36L1	0.843	1
PARD3	Amp_22q12.2	0.843	1
RHOA	Amp_7p21.1	0.843	1
SHANK1	Amp_7p21.1	0.843	1
SHANK1	Del_11q25	0.843	1
TP53	Del_6p25.3	0.843	1
3q-Amp	Amp_17q12	0.843	1
6q-Del	Amp_17q12	0.843	1
Amp_17q12	Del_15q13.1	0.843	1
Amp_17q23.3	Del_15q13.1	0.843	1
Amp_22q12.2	Del_12p13.1	0.843	1
CDKN1A	16p-Del	0.844	1
ELF3	TMCO4	0.844	1
ELF3	ZFP36L1	0.844	1
ERCC2	Amp_8p11.23	0.844	1
ERCC2	Del_16p13.3	0.844	1
FOXA1	PSIP1	0.844	1
FOXQ1	PSIP1	0.844	1
GNA13	Del_3p14.2	0.844	1
KIAA1267	5q-Del	0.844	1
NFE2L2	5q-Del	0.844	1
PSIP1	PTEN	0.844	1
PTEN	7q-Amp	0.844	1
PTEN	15q-Del	0.844	1
RB1	19p-Del	0.844	1
RXRA	5q-Del	0.844	1
RXRA	Amp_19q12	0.844	1
ZNF185	Del_Xp11.3	0.844	1
1q-Amp	7q-Amp	0.844	1
1q-Amp	15q-Del	0.844	1
3q-Amp	Amp_8q22.3	0.844	1
19p-Del	9p-Del	0.844	1
22q-Del	Amp_19q12	0.844	1
ASXL2	Del_9p23	0.845	1
CDKN2A	FAM47C	0.845	1
CUL1	TP53	0.845	1
ELF3	11p-Del	0.845	1
ERBB3	Amp_3p25.2	0.845	1
NF2	PIK3CA	0.845	1
PSIP1	Del_22q13.32	0.845	1
RAI1	RHOB	0.845	1
RBM10	RHOB	0.845	1
STAG2	Del_9p23	0.845	1
20p-Amp	15q-Del	0.845	1
20q-Amp	4q-Del	0.845	1
7q-Amp	Del_22q13.32	0.845	1
8q-Amp	Amp_1q21.3	0.845	1
Amp_3p25.2	Amp_5p15.33	0.845	1
Amp_8p11.23	Del_9p23	0.845	1
Amp_16p13.2	Del_4q22.1	0.845	1
BCL2L1	DNAH6	0.846	1
BCL2L1	HRAS	0.846	1
BCL2L1	TXNIP	0.846	1
CDKN1A	SCARF2	0.846	1
CDKN1A	19p-Del	0.846	1
CSMD3	FAT1	0.846	1
ERBB3	Del_18q23	0.846	1
FAT1	ZBTB7B	0.846	1
FAT1	Del_16p13.3	0.846	1
FGFR3	10q-Del	0.846	1
PLCXD3	Del_11q25	0.846	1
STAG2	6q-Del	0.846	1
STAG2	Del_11q23.3	0.846	1
20q-Amp	Amp_6q21	0.846	1
3q-Amp	Del_16p13.3	0.846	1
6q-Del	Amp_8p11.23	0.846	1
Amp_3p25.2	Del_11q23.3	0.846	1
Amp_8p11.23	Del_15q13.1	0.846	1
CDKN2A	SPTAN1	0.847	1
CUL1	Del_15q13.1	0.847	1
DNAH6	Amp_19q13.43	0.847	1
ERCC2	Del_12p13.1	0.847	1
FOXQ1	18q-Del	0.847	1
HLA-A	Amp_20q11.21	0.847	1
METTL3	3q-Amp	0.847	1
RB1	Del_5q12.1	0.847	1
RUNX1	Del_22q13.32	0.847	1
SCARF2	19p-Del	0.847	1
THRAP3	Del_14q24.1	0.847	1
3p-Amp	6q-Del	0.847	1
Del_8p23.3	Del_13q14.2	0.847	1
ARID1B	GNA13	0.848	1
ARID1B	17q-Amp	0.848	1
CDKN2A	3q-Amp	0.848	1
CSMD3	Amp_4q13.3	0.848	1
ELF3	Del_3p14.2	0.848	1
GNA13	KLF5	0.848	1
NF1	Del_17p12	0.848	1
NFE2L2	17p-Del	0.848	1
PLCXD3	Del_17p12	0.848	1
RBM10	9p-Del	0.848	1
RHOB	10q-Del	0.848	1
RHOB	6q-Del	0.848	1
RHOB	Del_15q13.1	0.848	1
RXRA	11p-Del	0.848	1
SPTAN1	Amp_4p16.3	0.848	1
TMCO4	7p-Amp	0.848	1
19q-Amp	Del_16p13.3	0.848	1
8q-Amp	Del_13q14.2	0.848	1
4q-Del	Del_Xq21.33	0.848	1
CSMD3	ZNF185	0.849	1
FAT1	Del_2q22.1	0.849	1
FOXA1	8q-Amp	0.849	1
FOXQ1	Del_18q23	0.849	1
HLA-A	IDH1	0.849	1
IDH1	NRAS	0.849	1
IDH1	NUDT11	0.849	1
IDH1	UNC93B1	0.849	1
PSIP1	4p-Del	0.849	1
STAG2	Amp_8p11.23	0.849	1
THRAP3	Del_18q23	0.849	1
TSC1	Amp_3q26.33	0.849	1
ZBTB7B	ZFP36L1	0.849	1
ZFP36L1	Amp_6q21	0.849	1
1q-Amp	8q-Amp	0.849	1
20q-Amp	Del_2q22.1	0.849	1
7q-Amp	14q-Del	0.849	1
7q-Amp	4p-Del	0.849	1
8q-Amp	Del_1p36.11	0.849	1
14q-Del	Amp_3q26.33	0.849	1
4p-Del	Amp_3q26.33	0.849	1
Amp_3p25.2	Del_7q36.3	0.849	1
Amp_5p15.33	Del_6q27	0.849	1
Amp_8p11.23	Del_16p13.3	0.849	1
Amp_12q15	Del_5q12.1	0.849	1
Amp_16p13.2	Del_6q27	0.849	1
C3orf70	Amp_8p11.21	0.85	1
CDKN2A	CSMD3	0.85	1
METTL3	Del_2q22.1	0.85	1
MLL3	Amp_13q22.1	0.85	1
RHOB	STAG2	0.85	1
RHOB	Amp_8p11.23	0.85	1
TSC1	Amp_7p11.2	0.85	1
11q-Del	Amp_20q11.21	0.85	1
ARID1A	GNA13	0.851	1
ARID1A	MBD1	0.851	1
ARID1A	Del_1q32.1	0.851	1
ARID1B	ASXL2	0.851	1
ARID1B	Amp_17q12	0.851	1
ASXL2	KLF5	0.851	1
CDKN1A	RB1	0.851	1
CUL1	TXNIP	0.851	1
FBXW7	MLL3	0.851	1
FBXW7	Del_2q37.1	0.851	1
GNA13	RB1	0.851	1
HRAS	METTL3	0.851	1
HRAS	3p-Amp	0.851	1
METTL3	TXNIP	0.851	1
MLL2	Del_18q23	0.851	1
PLCXD3	Del_3p14.2	0.851	1
RAI1	RUNX1	0.851	1
RAI1	Del_Xp11.3	0.851	1
RB1	TMCO4	0.851	1
RBM10	Del_Xp11.3	0.851	1
TXNIP	3p-Amp	0.851	1
17q-Amp	9p-Del	0.851	1
17q-Amp	Amp_5p15.33	0.851	1
20p-Amp	14q-Del	0.851	1
3q-Amp	8p-Del	0.851	1
8q-Amp	Amp_4p16.3	0.851	1
18q-Del	Amp_3q26.33	0.851	1
4q-Del	Amp_17q12	0.851	1
9p-Del	Del_1q32.1	0.851	1
Amp_4q13.3	Amp_8q22.3	0.851	1
Amp_8p11.21	Del_16q23.1	0.851	1
Amp_12q15	Del_2q22.1	0.851	1
ELF3	SHANK1	0.852	1
PARD3	Amp_5p15.33	0.852	1
Amp_1p34.2	Del_14q24.1	0.852	1
ARID1A	ASXL2	0.853	1
CNNM4	Del_10q23.31	0.853	1
CNOT1	Del_10q23.31	0.853	1
ERBB2	Del_5q12.1	0.853	1
FAM47C	Del_10q23.31	0.853	1
HLA-A	18q-Del	0.853	1
NF2	Del_10q23.31	0.853	1
RAI1	Amp_11q13.3	0.853	1
RB1	Amp_20q11.21	0.853	1
RBM10	Amp_3q26.33	0.853	1
RHOA	19q-Amp	0.853	1
RHOA	Amp_4q13.3	0.853	1
SF1	Amp_3q26.33	0.853	1
UNC93B1	Del_14q24.1	0.853	1
ZBTB7B	Amp_8p11.21	0.853	1
Amp_6q21	Amp_8p11.21	0.853	1
CDKN2A	Amp_8q22.3	0.854	1
CNNM4	14q-Del	0.854	1
KIAA1267	Amp_7p21.1	0.854	1
NF2	4p-Del	0.854	1
PARD3	8p-Del	0.854	1
RUNX1	Del_13q14.2	0.854	1
RXRA	Del_6q27	0.854	1
RXRA	Del_11q25	0.854	1
THRAP3	Amp_1q21.3	0.854	1
Amp_1q21.3	Del_1p36.11	0.854	1
Amp_7p21.1	Amp_11q22.2	0.854	1
Del_9p21.3	Del_14q24.1	0.854	1
BCL2L1	RPTN	0.855	1
BCL2L1	19q-Amp	0.855	1
BCL2L1	Amp_4q13.3	0.855	1
BCL2L1	Del_7q36.3	0.855	1
CUL1	PIK3CA	0.855	1
ERBB2	NF1	0.855	1
ERBB3	PSIP1	0.855	1
ERBB3	Del_16q23.1	0.855	1
ERBB3	Del_Xp11.3	0.855	1
ERCC2	FOXA1	0.855	1
ERCC2	FOXQ1	0.855	1
ERCC2	PTEN	0.855	1
GNA13	ZNF185	0.855	1
IDH1	8q-Amp	0.855	1
IDH1	Del_18q23	0.855	1
PARD3	Amp_6p22.3	0.855	1
RAI1	18q-Del	0.855	1
RHOA	Amp_6p22.3	0.855	1
RPTN	Del_11p15.5	0.855	1
TMCO4	ZNF185	0.855	1
ZNF185	17q-Amp	0.855	1
ZNF185	Del_1q32.1	0.855	1
ZNF185	Del_Xq21.33	0.855	1
Amp_4q13.3	Del_11p15.5	0.855	1
CDKN1A	6q-Del	0.856	1
ERBB3	Del_2q34	0.856	1
ERBB3	Del_19p13.3	0.856	1
ERCC2	Del_2q37.1	0.856	1
PIK3CA	9q-Del	0.856	1
PLCXD3	SF1	0.856	1
RXRA	Amp_19q13.43	0.856	1
3q-Amp	Del_19p13.3	0.856	1
7p-Amp	4q-Del	0.856	1
22q-Del	Del_9p23	0.856	1
22q-Del	Del_12p13.1	0.856	1
Amp_3q26.33	Del_13q14.2	0.856	1
DNAH6	TSC1	0.857	1
KIAA1267	Del_18q23	0.857	1
PTEN	Amp_4p16.3	0.857	1
3q-Amp	Del_11p15.5	0.857	1
8q-Amp	16p-Del	0.857	1
Amp_3p25.2	Del_10q23.31	0.857	1
Amp_4p16.3	Del_1p36.11	0.857	1
Amp_6p22.3	Del_6q27	0.857	1
C3orf70	Amp_19q12	0.858	1
CDKN2A	Del_6p25.3	0.858	1
CUL1	ERBB2	0.858	1
CUL1	Amp_19q12	0.858	1
FAM47C	ZFP36L1	0.858	1
MLL2	PARD3	0.858	1
RAI1	ZFP36L1	0.858	1
RHOB	Del_6p25.3	0.858	1
TP53	Amp_4q13.3	0.858	1
TP53	Del_7q36.3	0.858	1
ZNF185	Amp_11q13.3	0.858	1
ZNF185	Del_10q23.31	0.858	1
20q-Amp	Del_11p15.5	0.858	1
3p-Amp	Amp_19q12	0.858	1
8p-Del	Amp_7p21.1	0.858	1
Del_4q22.1	Del_12p13.1	0.858	1
ATM	NF2	0.859	1
CDKN1A	19q-Amp	0.859	1
CTNNB1	Amp_6p22.3	0.859	1
GNA13	PARD3	0.859	1
HES1	NFE2L2	0.859	1
HES1	16p-Del	0.859	1
NF2	Del_4q34.2	0.859	1
NFE2L2	ZBTB7B	0.859	1
PARD3	17q-Amp	0.859	1
PARD3	Del_Xq21.33	0.859	1
RHOB	Del_17p12	0.859	1
RXRA	ZBTB7B	0.859	1
SPTAN1	Del_Xq21.33	0.859	1
STAG2	15q-Del	0.859	1
TMCO4	Del_12p13.1	0.859	1
ZBTB7B	Amp_11q22.2	0.859	1
17q-Amp	Amp_7p11.2	0.859	1
15q-Del	Amp_8p11.23	0.859	1
5q-Del	Del_7q36.3	0.859	1
Amp_7p11.2	Del_Xq21.33	0.859	1
Del_11q23.3	Del_19p13.3	0.859	1
Del_12p13.1	Del_Xq21.33	0.859	1
CUL1	8p-Del	0.86	1
ELF3	ERCC2	0.86	1
ERBB2	HES1	0.86	1
FBXW7	SHANK1	0.86	1
HES1	Amp_19q12	0.86	1
KRAS	5p-Amp	0.86	1
METTL3	8p-Del	0.86	1
NRAS	Amp_3p25.2	0.86	1
PKHD1	Amp_17q23.3	0.86	1
PKHD1	Del_3p14.2	0.86	1
RUNX1	5p-Amp	0.86	1
SCARF2	TSC1	0.86	1
SHANK1	Amp_1p34.2	0.86	1
TP53	Amp_11q22.2	0.86	1
TSC1	19p-Del	0.86	1
UNC93B1	Amp_3p25.2	0.86	1
ZNF185	Del_8p23.3	0.86	1
3p-Amp	8p-Del	0.86	1
Del_6p25.3	Del_13q14.2	0.86	1
FGFR3	Amp_12q15	0.861	1
KDM6A	14q-Del	0.861	1
NRAS	Amp_8q22.3	0.861	1
PSIP1	RHOB	0.861	1
STAG2	Del_6p25.3	0.861	1
STAG2	Del_16q23.1	0.861	1
Amp_8p11.23	Del_16q23.1	0.861	1
ARID1B	CDKN1A	0.862	1
CSMD3	Del_4q22.1	0.862	1
FBXW7	Del_2q22.1	0.862	1
KLF5	5q-Del	0.862	1
KRAS	15q-Del	0.862	1
PLCXD3	Amp_7p11.2	0.862	1
PSIP1	Del_Xp11.3	0.862	1
RB1	TXNIP	0.862	1
RHOA	Amp_20q11.21	0.862	1
SHANK1	Amp_20q11.21	0.862	1
STAG2	Del_4q22.1	0.862	1
5p-Amp	8q-Amp	0.862	1
5p-Amp	Amp_8p11.21	0.862	1
5p-Amp	Del_18q23	0.862	1
7p-Amp	5q-Del	0.862	1
5q-Del	Amp_1q23.3	0.862	1
9p-Del	Del_10q23.31	0.862	1
Amp_1p34.2	Del_2q22.1	0.862	1
Amp_8p11.21	Del_16p13.3	0.862	1
Del_2q22.1	Del_8p21.3	0.862	1
Del_5q12.1	Del_12p13.1	0.862	1
ARID1A	Del_11q23.3	0.863	1
ATM	ZNF185	0.863	1
BCL2L1	Amp_10p14	0.863	1
CREBBP	MLL3	0.863	1
ERBB2	FAT1	0.863	1
MLL2	PKHD1	0.863	1
MLL3	NFE2L2	0.863	1
MLL3	Del_6q27	0.863	1
NF2	RHOB	0.863	1
RHOB	SF1	0.863	1
RPTN	Amp_3q26.33	0.863	1
ZNF185	Del_4q34.2	0.863	1
19q-Amp	Del_10q23.31	0.863	1
9p-Del	Amp_8p11.21	0.863	1
9p-Del	Del_2q22.1	0.863	1
Amp_10p14	Del_3p14.2	0.863	1
Del_4q22.1	Del_11q25	0.863	1
ARID1B	ERBB2	0.864	1
ARID1B	Amp_19q12	0.864	1
BCL2L1	CTNNB1	0.864	1
BCL2L1	FOXQ1	0.864	1
BCL2L1	PTEN	0.864	1
BCL2L1	THRAP3	0.864	1
BCL2L1	1q-Amp	0.864	1
BCL2L1	Del_1p36.11	0.864	1
FOXA1	Del_4q22.1	0.864	1
NRAS	Del_11p15.5	0.864	1
NUDT11	Del_11p15.5	0.864	1
PIK3CA	3q-Amp	0.864	1
PIK3CA	6q-Del	0.864	1
PIK3CA	Del_15q13.1	0.864	1
RB1	Amp_7p11.2	0.864	1
THRAP3	Del_4q22.1	0.864	1
TSC1	Del_17p12	0.864	1
10q-Del	Amp_22q12.2	0.864	1
16p-Del	Amp_17q23.3	0.864	1
4p-Del	Amp_3p25.2	0.864	1
4q-Del	Amp_19q12	0.864	1
Amp_7p21.1	Del_2q34	0.864	1
Amp_11q22.2	Amp_17q23.3	0.864	1
Amp_12q15	Del_9p23	0.864	1
Amp_22q12.2	Del_15q13.1	0.864	1
ARID1A	ZFP36L1	0.865	1
CDKN2A	Amp_10p14	0.865	1
CNNM4	Amp_1q21.3	0.865	1
CNOT1	ERCC2	0.865	1
CSMD3	PKHD1	0.865	1
CTNNB1	Amp_20q11.21	0.865	1
ERCC2	FAM47C	0.865	1
ERCC2	RBM10	0.865	1
FOXQ1	Amp_20q11.21	0.865	1
HLA-A	SCARF2	0.865	1
HLA-A	19p-Del	0.865	1
HLA-A	Del_4q22.1	0.865	1
MLL2	Amp_19q13.43	0.865	1
NF1	Del_9p21.3	0.865	1
NRAS	SCARF2	0.865	1
NRAS	19p-Del	0.865	1
NUDT11	SCARF2	0.865	1
NUDT11	19p-Del	0.865	1
NUDT11	Del_4q22.1	0.865	1
RHOB	Amp_10p14	0.865	1
SCARF2	UNC93B1	0.865	1
THRAP3	Amp_20q11.21	0.865	1
UNC93B1	19p-Del	0.865	1
Amp_8p11.23	Amp_16p13.2	0.865	1
CREBBP	KDM6A	0.866	1
CREBBP	NF1	0.866	1
CREBBP	Amp_6q21	0.866	1
DNAH6	TXNIP	0.866	1
MBD1	Amp_13q22.1	0.866	1
MBD1	Del_6p25.3	0.866	1
MBD1	Del_17p12	0.866	1
MLL	Del_1q32.1	0.866	1
MLL	Del_Xq21.33	0.866	1
MLL3	8p-Del	0.866	1
TMCO4	Amp_13q22.1	0.866	1
TMCO4	Del_6p25.3	0.866	1
ZBTB7B	Del_6q27	0.866	1
17q-Amp	Amp_12q15	0.866	1
17q-Amp	Del_6p25.3	0.866	1
Amp_6q21	Del_6q27	0.866	1
Amp_13q22.1	Del_1q32.1	0.866	1
Amp_17q12	Amp_19q12	0.866	1
Del_17p12	Del_Xq21.33	0.866	1
ASXL2	18q-Del	0.867	1
C3orf70	19q-Amp	0.867	1
C3orf70	Del_6q27	0.867	1
C3orf70	Del_7q36.3	0.867	1
CUL1	Del_5q12.1	0.867	1
DNAH6	10q-Del	0.867	1
DNAH6	Del_11q23.3	0.867	1
ERCC2	Del_4q22.1	0.867	1
FAT1	TXNIP	0.867	1
HES1	ZNF185	0.867	1
METTL3	RPTN	0.867	1
METTL3	9q-Del	0.867	1
METTL3	Del_11q25	0.867	1
MLL	PLCXD3	0.867	1
PLCXD3	Amp_13q22.1	0.867	1
PLCXD3	Del_6p25.3	0.867	1
SCARF2	3q-Amp	0.867	1
TXNIP	6q-Del	0.867	1
ZBTB7B	ZNF185	0.867	1
ZNF185	Amp_6q21	0.867	1
17q-Amp	Amp_8q22.3	0.867	1
19q-Amp	3p-Amp	0.867	1
3p-Amp	Del_7q36.3	0.867	1
3q-Amp	19p-Del	0.867	1
3q-Amp	Amp_11q13.3	0.867	1
19p-Del	Del_15q13.1	0.867	1
6q-Del	Amp_11q13.3	0.867	1
Amp_3q26.33	Del_15q13.1	0.867	1
ASXL2	PARD3	0.868	1
CNNM4	Del_8p21.3	0.868	1
CSMD3	MLL2	0.868	1
CSMD3	PIK3CA	0.868	1
ERBB3	20p-Amp	0.868	1
ERBB3	Del_22q13.32	0.868	1
KIAA1267	TSC1	0.868	1
METTL3	NF1	0.868	1
MLL2	STAG2	0.868	1
MLL2	Amp_8p11.23	0.868	1
NF1	3p-Amp	0.868	1
NF1	Amp_20q11.21	0.868	1
PIK3CA	RUNX1	0.868	1
RHOB	Del_22q13.32	0.868	1
RXRA	TSC1	0.868	1
TP53	Amp_19q12	0.868	1
20p-Amp	Del_2q37.1	0.868	1
Amp_4q13.3	Amp_19q13.43	0.868	1
Amp_10p14	Del_16p13.3	0.868	1
ARID1B	ZBTB7B	0.869	1
CDKN2A	Amp_3q26.33	0.869	1
CDKN2A	Amp_11q13.3	0.869	1
CTNNB1	RHOA	0.869	1
FOXA1	KDM6A	0.869	1
FOXA1	SHANK1	0.869	1
FOXQ1	RHOA	0.869	1
FOXQ1	SHANK1	0.869	1
IDH1	PLCXD3	0.869	1
RHOA	THRAP3	0.869	1
RHOB	Amp_3q26.33	0.869	1
SHANK1	11p-Del	0.869	1
ZBTB7B	7p-Amp	0.869	1
17q-Amp	Amp_10p14	0.869	1
5p-Amp	Del_10q23.31	0.869	1
7p-Amp	Amp_6q21	0.869	1
14q-Del	Del_13q14.2	0.869	1
15q-Del	Amp_8q22.3	0.869	1
19p-Del	9q-Del	0.869	1
4q-Del	Amp_6q21	0.869	1
Amp_10p14	Del_Xq21.33	0.869	1
ARID1B	PARD3	0.87	1
CNOT1	GNA13	0.87	1
CNOT1	MBD1	0.87	1
CNOT1	17q-Amp	0.87	1
CNOT1	Del_1q32.1	0.87	1
CNOT1	Del_Xq21.33	0.87	1
FAM47C	GNA13	0.87	1
FAM47C	MBD1	0.87	1
FAM47C	TMCO4	0.87	1
GNA13	RAI1	0.87	1
KDM6A	SCARF2	0.87	1
PARD3	7p-Amp	0.87	1
PIK3CA	8q-Amp	0.87	1
PIK3CA	Del_18q23	0.87	1
PLCXD3	Del_9p23	0.87	1
RBM10	Del_Xq21.33	0.87	1
SF1	Amp_6p22.3	0.87	1
SPTAN1	Amp_3q26.33	0.87	1
SPTAN1	Del_14q24.1	0.87	1
19q-Amp	Del_4q34.2	0.87	1
7p-Amp	Del_12p13.1	0.87	1
Amp_3q26.33	Amp_7p11.2	0.87	1
Amp_7p11.2	Amp_11q13.3	0.87	1
ASXL2	8p-Del	0.871	1
CNNM4	Del_2q34	0.871	1
CNOT1	RXRA	0.871	1
CNOT1	22q-Del	0.871	1
FAM47C	Amp_10p14	0.871	1
FAT1	17p-Del	0.871	1
FGFR3	MLL3	0.871	1
KIAA1267	RAI1	0.871	1
KRAS	Del_8p23.3	0.871	1
MLL	5p-Amp	0.871	1
MLL3	ZBTB7B	0.871	1
NF2	Del_2q34	0.871	1
PIK3CA	16p-Del	0.871	1
PIK3CA	22q-Del	0.871	1
RAI1	Amp_11q22.2	0.871	1
RBM10	22q-Del	0.871	1
RBM10	Amp_10p14	0.871	1
SF1	Del_2q34	0.871	1
18q-Del	Del_Xp11.3	0.871	1
ARID1A	RHOA	0.872	1
ASXL2	HLA-A	0.872	1
ASXL2	NRAS	0.872	1
ASXL2	UNC93B1	0.872	1
ASXL2	1q-Amp	0.872	1
CNNM4	Amp_22q12.2	0.872	1
ERBB3	8p-Del	0.872	1
FOXA1	Amp_17q12	0.872	1
HLA-A	Amp_17q12	0.872	1
KDM6A	METTL3	0.872	1
NRAS	Amp_17q12	0.872	1
PARD3	Del_17p12	0.872	1
THRAP3	Amp_17q12	0.872	1
UNC93B1	Amp_17q12	0.872	1
ZNF185	Del_2q34	0.872	1
1q-Amp	Amp_17q12	0.872	1
14q-Del	Amp_1p34.2	0.872	1
Amp_1p34.2	Amp_19q12	0.872	1
ARID1B	Amp_19q13.43	0.873	1
BCL2L1	KRAS	0.873	1
BCL2L1	RUNX1	0.873	1
BCL2L1	Del_Xp11.3	0.873	1
CREBBP	7p-Amp	0.873	1
GNA13	Del_22q13.32	0.873	1
KLF5	Del_6q27	0.873	1
MBD1	20p-Amp	0.873	1
MBD1	Del_22q13.32	0.873	1
TMCO4	20p-Amp	0.873	1
20p-Amp	Del_1q32.1	0.873	1
15q-Del	Amp_22q12.2	0.873	1
4q-Del	Amp_7p21.1	0.873	1
4q-Del	Del_11q25	0.873	1
Del_22q13.32	Del_Xq21.33	0.873	1
C3orf70	ELF3	0.874	1
C3orf70	Del_13q14.2	0.874	1
CUL1	Del_3p14.2	0.874	1
ELF3	METTL3	0.874	1
ELF3	Del_4q22.1	0.874	1
KRAS	Amp_4p16.3	0.874	1
METTL3	Del_13q14.2	0.874	1
MLL3	Del_7q36.3	0.874	1
PKHD1	SCARF2	0.874	1
PKHD1	19p-Del	0.874	1
SPTAN1	Amp_3p25.2	0.874	1
TXNIP	Amp_8p11.21	0.874	1
7q-Amp	18q-Del	0.874	1
15q-Del	9p-Del	0.874	1
19p-Del	Amp_16p13.2	0.874	1
Amp_4q13.3	Del_2q37.1	0.874	1
CNOT1	Amp_1q21.3	0.875	1
FAM47C	Del_4q22.1	0.875	1
MLL3	Del_2q34	0.875	1
PARD3	Del_2q22.1	0.875	1
PSIP1	Del_10q23.31	0.875	1
RAI1	Amp_1q21.3	0.875	1
7q-Amp	Amp_3q26.33	0.875	1
15q-Del	Amp_3q26.33	0.875	1
15q-Del	Amp_11q13.3	0.875	1
Amp_8p11.21	Del_12p13.1	0.875	1
Amp_19q13.43	Del_11q23.3	0.875	1
CNNM4	MLL2	0.876	1
CREBBP	FAT1	0.876	1
CSMD3	ERBB2	0.876	1
CSMD3	FOXQ1	0.876	1
CSMD3	Del_1p36.11	0.876	1
CTNNB1	STAG2	0.876	1
DNAH6	PKHD1	0.876	1
DNAH6	Amp_16p13.2	0.876	1
FAT1	ZNF185	0.876	1
FGFR3	FOXA1	0.876	1
FGFR3	20p-Amp	0.876	1
FGFR3	Del_1p36.11	0.876	1
FOXA1	Amp_8p11.23	0.876	1
FOXQ1	Amp_8p11.23	0.876	1
HES1	Del_9p21.3	0.876	1
HRAS	PKHD1	0.876	1
PKHD1	Amp_22q12.2	0.876	1
PTEN	Del_16p13.3	0.876	1
SHANK1	8q-Amp	0.876	1
SHANK1	Del_18q23	0.876	1
ZNF185	20q-Amp	0.876	1
ZNF185	Del_11q23.3	0.876	1
20q-Amp	Del_11q25	0.876	1
5p-Amp	Amp_8q22.3	0.876	1
Amp_7p21.1	Amp_12q15	0.876	1
Amp_8p11.23	Del_10q23.31	0.876	1
Amp_12q15	Del_11q25	0.876	1
Amp_13q22.1	Del_6q27	0.876	1
Del_9p21.3	Del_Xp11.3	0.876	1
ATM	3q-Amp	0.877	1
ATM	Del_15q13.1	0.877	1
CNNM4	Del_11q23.3	0.877	1
EP300	Amp_7p11.2	0.877	1
FAT1	NF2	0.877	1
HLA-A	MLL3	0.877	1
KDM6A	7q-Amp	0.877	1
KDM6A	15q-Del	0.877	1
MLL3	UNC93B1	0.877	1
PIK3CA	PLCXD3	0.877	1
RHOB	Amp_4p16.3	0.877	1
RPTN	TSC1	0.877	1
SF1	Del_11q23.3	0.877	1
SPTAN1	Amp_1q23.3	0.877	1
19q-Amp	Del_17p12	0.877	1
3q-Amp	Amp_12q15	0.877	1
Amp_4q13.3	Del_17p12	0.877	1
Amp_5p15.33	Del_17p12	0.877	1
Amp_11q22.2	Del_8p21.3	0.877	1
ASXL2	CSMD3	0.878	1
C3orf70	Amp_1p34.2	0.878	1
CDKN1A	NRAS	0.878	1
CDKN1A	NUDT11	0.878	1
CDKN1A	PARD3	0.878	1
CNNM4	ZNF185	0.878	1
ERBB3	PLCXD3	0.878	1
ERBB3	RHOB	0.878	1
HES1	Del_12p13.1	0.878	1
HLA-A	11q-Del	0.878	1
HLA-A	5q-Del	0.878	1
MLL	SHANK1	0.878	1
NF2	ZNF185	0.878	1
NUDT11	5q-Del	0.878	1
PARD3	Del_19p13.3	0.878	1
RBM10	8p-Del	0.878	1
RHOA	Amp_12q15	0.878	1
RHOA	Del_16q23.1	0.878	1
RPTN	Del_9p21.3	0.878	1
SCARF2	5p-Amp	0.878	1
SF1	ZNF185	0.878	1
UNC93B1	11q-Del	0.878	1
20p-Amp	Amp_19q12	0.878	1
Amp_8q22.3	Del_10q23.31	0.878	1
Del_12p13.1	Del_19p13.3	0.878	1
KDM6A	Del_16q23.1	0.879	1
KIAA1267	6q-Del	0.879	1
METTL3	Amp_1q21.3	0.879	1
NFE2L2	10q-Del	0.879	1
PSIP1	TP53	0.879	1
RXRA	3q-Amp	0.879	1
RXRA	6q-Del	0.879	1
RXRA	Del_15q13.1	0.879	1
20p-Amp	Amp_5p15.33	0.879	1
3q-Amp	Amp_11q22.2	0.879	1
7p-Amp	Del_18q23	0.879	1
Amp_7p21.1	Del_17p12	0.879	1
Amp_16p13.2	Del_11p15.5	0.879	1
C3orf70	Amp_8q22.3	0.88	1
CDKN1A	PTEN	0.88	1
CDKN1A	1q-Amp	0.88	1
DNAH6	RPTN	0.88	1
DNAH6	19q-Amp	0.88	1
ERBB3	Del_1q32.1	0.88	1
ERBB3	Del_2q22.1	0.88	1
ERBB3	Del_Xq21.33	0.88	1
FOXA1	5q-Del	0.88	1
GNA13	PSIP1	0.88	1
GNA13	15q-Del	0.88	1
HRAS	Amp_4q13.3	0.88	1
KIAA1267	SF1	0.88	1
MBD1	PSIP1	0.88	1
METTL3	Amp_8q22.3	0.88	1
NF2	NFE2L2	0.88	1
NF2	22q-Del	0.88	1
PSIP1	17q-Amp	0.88	1
PSIP1	Del_Xq21.33	0.88	1
TMCO4	7q-Amp	0.88	1
TSC1	17p-Del	0.88	1
TXNIP	Amp_4q13.3	0.88	1
TXNIP	Del_7q36.3	0.88	1
17q-Amp	7q-Amp	0.88	1
17q-Amp	15q-Del	0.88	1
17q-Amp	9q-Del	0.88	1
5p-Amp	Amp_6p22.3	0.88	1
7q-Amp	Del_1q32.1	0.88	1
11q-Del	Del_1p36.11	0.88	1
5q-Del	Del_1p36.11	0.88	1
9q-Del	Del_1q32.1	0.88	1
Del_1p36.11	Del_19p13.3	0.88	1
ASXL2	Del_5q12.1	0.881	1
C3orf70	FOXQ1	0.881	1
C3orf70	THRAP3	0.881	1
C3orf70	1q-Amp	0.881	1
CDKN2A	Del_5q12.1	0.881	1
CTNNB1	METTL3	0.881	1
CUL1	FOXQ1	0.881	1
CUL1	5p-Amp	0.881	1
CUL1	Del_1p36.11	0.881	1
FOXA1	3p-Amp	0.881	1
FOXQ1	3p-Amp	0.881	1
HLA-A	NRAS	0.881	1
HLA-A	UNC93B1	0.881	1
NF1	SCARF2	0.881	1
NRAS	NUDT11	0.881	1
NRAS	UNC93B1	0.881	1
NUDT11	UNC93B1	0.881	1
RB1	Amp_13q22.1	0.881	1
RB1	Del_6p25.3	0.881	1
RB1	Del_16q23.1	0.881	1
RHOA	4p-Del	0.881	1
TP53	Del_22q13.32	0.881	1
TXNIP	Amp_10p14	0.881	1
3p-Amp	Del_1p36.11	0.881	1
9p-Del	Del_6p25.3	0.881	1
ELF3	7p-Amp	0.882	1
ELF3	4q-Del	0.882	1
ERBB3	Del_5q12.1	0.882	1
FAM47C	Amp_5p15.33	0.882	1
FAM47C	Amp_6p22.3	0.882	1
KDM6A	8q-Amp	0.882	1
KIAA1267	Amp_7p11.2	0.882	1
THRAP3	Amp_3p25.2	0.882	1
1q-Amp	Amp_3p25.2	0.882	1
7p-Amp	Amp_17q23.3	0.882	1
7p-Amp	Del_3p14.2	0.882	1
18q-Del	Del_16q23.1	0.882	1
8p-Del	Del_9p23	0.882	1
Amp_1p34.2	Amp_6p22.3	0.882	1
Amp_1p34.2	Amp_7p21.1	0.882	1
Amp_6p22.3	Del_17p12	0.882	1
Amp_7p11.2	Amp_11q22.2	0.882	1
ARID1B	FAM47C	0.883	1
ARID1B	RBM10	0.883	1
ATM	7q-Amp	0.883	1
BCL2L1	GNA13	0.883	1
BCL2L1	MBD1	0.883	1
BCL2L1	TMCO4	0.883	1
BCL2L1	17q-Amp	0.883	1
BCL2L1	Del_1q32.1	0.883	1
BCL2L1	Del_Xq21.33	0.883	1
CNNM4	Del_2q22.1	0.883	1
ERCC2	15q-Del	0.883	1
FAM47C	KLF5	0.883	1
MLL3	3q-Amp	0.883	1
MLL3	6q-Del	0.883	1
MLL3	Del_15q13.1	0.883	1
PIK3CA	Del_6p25.3	0.883	1
PIK3CA	Del_16q23.1	0.883	1
PLCXD3	SCARF2	0.883	1
PLCXD3	19p-Del	0.883	1
RAI1	7p-Amp	0.883	1
SF1	Amp_8p11.21	0.883	1
3q-Amp	Del_2q37.1	0.883	1
5p-Amp	Del_4q22.1	0.883	1
8q-Amp	Del_2q37.1	0.883	1
Amp_4q13.3	Del_2q34	0.883	1
Amp_6p22.3	Del_11p15.5	0.883	1
NF1	Del_19p13.3	0.884	1
NRAS	Del_9p21.3	0.884	1
NUDT11	Amp_19q13.43	0.884	1
NUDT11	Del_9p21.3	0.884	1
PIK3CA	Del_19p13.3	0.884	1
20p-Amp	Del_9p23	0.884	1
Amp_3q26.33	Amp_12q15	0.884	1
Amp_3q26.33	Del_16q23.1	0.884	1
Amp_12q15	Del_10q23.31	0.884	1
Del_2q22.1	Del_9p21.3	0.884	1
ASXL2	KDM6A	0.885	1
C3orf70	Amp_6p22.3	0.885	1
CDKN2A	FBXW7	0.885	1
DNAH6	NF1	0.885	1
ELF3	Del_5q12.1	0.885	1
EP300	Amp_8p11.21	0.885	1
ERBB3	MLL3	0.885	1
ERBB3	TSC1	0.885	1
FAM47C	Del_5q12.1	0.885	1
PSIP1	Amp_11q22.2	0.885	1
RB1	Amp_11q22.2	0.885	1
RHOB	Amp_1p34.2	0.885	1
RUNX1	SHANK1	0.885	1
SHANK1	Del_Xp11.3	0.885	1
SPTAN1	Amp_6q21	0.885	1
17q-Amp	Del_13q14.2	0.885	1
19q-Amp	3q-Amp	0.885	1
19q-Amp	Del_15q13.1	0.885	1
3p-Amp	Amp_6p22.3	0.885	1
7q-Amp	22q-Del	0.885	1
10q-Del	Amp_4q13.3	0.885	1
9q-Del	Amp_17q23.3	0.885	1
Amp_6p22.3	Del_10q23.31	0.885	1
Amp_22q12.2	Del_17p12	0.885	1
Del_7q36.3	Del_15q13.1	0.885	1
ASXL2	Amp_1p34.2	0.886	1
CNOT1	FAT1	0.886	1
CNOT1	Del_11q23.3	0.886	1
IDH1	RHOB	0.886	1
KRAS	Del_4q22.1	0.886	1
RBM10	20q-Amp	0.886	1
RBM10	Del_9p21.3	0.886	1
RBM10	Del_11q23.3	0.886	1
RUNX1	Del_4q22.1	0.886	1
ZFP36L1	Amp_8q22.3	0.886	1
7p-Amp	Del_2q37.1	0.886	1
Amp_1p34.2	Amp_17q12	0.886	1
Amp_3q26.33	Del_2q22.1	0.886	1
Amp_11q13.3	Del_2q22.1	0.886	1
Del_4q22.1	Del_Xp11.3	0.886	1
BCL2L1	8q-Amp	0.887	1
BCL2L1	Del_18q23	0.887	1
EP300	19p-Del	0.887	1
IDH1	Amp_11q13.3	0.887	1
KDM6A	Amp_17q23.3	0.887	1
SHANK1	Del_11p15.5	0.887	1
ZFP36L1	Amp_11q13.3	0.887	1
1q-Amp	Del_11p15.5	0.887	1
20q-Amp	14q-Del	0.887	1
17p-Del	19p-Del	0.887	1
Amp_1q23.3	Del_11q23.3	0.887	1
Del_1p36.11	Del_11p15.5	0.887	1
ARID1A	PKHD1	0.888	1
DNAH6	Del_6q27	0.888	1
ELF3	Amp_13q22.1	0.888	1
ELF3	Amp_17q12	0.888	1
FAM47C	HES1	0.888	1
FAM47C	ZBTB7B	0.888	1
FAM47C	Amp_6q21	0.888	1
FBXW7	SCARF2	0.888	1
FOXA1	Amp_19q13.43	0.888	1
FOXA1	Del_10q23.31	0.888	1
FOXQ1	Amp_3q26.33	0.888	1
FOXQ1	Amp_11q13.3	0.888	1
HES1	RAI1	0.888	1
MLL	Amp_17q23.3	0.888	1
PLCXD3	18q-Del	0.888	1
RBM10	ZBTB7B	0.888	1
SF1	Amp_3p25.2	0.888	1
TXNIP	Del_6q27	0.888	1
TXNIP	Del_11q25	0.888	1
1q-Amp	Amp_19q13.43	0.888	1
1q-Amp	Del_10q23.31	0.888	1
20p-Amp	3q-Amp	0.888	1
20p-Amp	6q-Del	0.888	1
20p-Amp	Del_15q13.1	0.888	1
3q-Amp	Del_22q13.32	0.888	1
11q-Del	8p-Del	0.888	1
Amp_13q22.1	Del_3p14.2	0.888	1
Amp_16p13.2	Del_13q14.2	0.888	1
Amp_17q12	Del_3p14.2	0.888	1
Amp_17q23.3	Del_6p25.3	0.888	1
Amp_19q13.43	Del_1p36.11	0.888	1
Amp_19q13.43	Del_12p13.1	0.888	1
Amp_20q11.21	Amp_22q12.2	0.888	1
Del_3p14.2	Del_6p25.3	0.888	1
ARID1B	CNNM4	0.889	1
ARID1B	NF2	0.889	1
ARID1B	SF1	0.889	1
CNNM4	ERBB2	0.889	1
CNNM4	KLF5	0.889	1
CREBBP	ZNF185	0.889	1
CREBBP	Amp_8p11.23	0.889	1
ERBB2	NF2	0.889	1
HLA-A	9p-Del	0.889	1
IDH1	PIK3CA	0.889	1
MLL2	NF1	0.889	1
MLL2	14q-Del	0.889	1
NF2	7p-Amp	0.889	1
NF2	4q-Del	0.889	1
NRAS	TSC1	0.889	1
RHOA	Del_17p12	0.889	1
SF1	Amp_19q12	0.889	1
ZNF185	Amp_7p21.1	0.889	1
ZNF185	Del_6q27	0.889	1
ZNF185	Del_11q25	0.889	1
Amp_7p21.1	Del_16p13.3	0.889	1
Amp_8p11.23	Del_4q34.2	0.889	1
Amp_20q11.21	Del_9p21.3	0.889	1
C3orf70	SPTAN1	0.89	1
CUL1	SPTAN1	0.89	1
FAT1	RPTN	0.89	1
IDH1	ZNF185	0.89	1
KIAA1267	Del_16p13.3	0.89	1
MLL3	20q-Amp	0.89	1
PIK3CA	14q-Del	0.89	1
PIK3CA	4p-Del	0.89	1
TMCO4	5p-Amp	0.89	1
TMCO4	Amp_4p16.3	0.89	1
20q-Amp	Amp_4q13.3	0.89	1
20q-Amp	Del_2q37.1	0.89	1
20q-Amp	Del_7q36.3	0.89	1
16p-Del	Amp_8p11.23	0.89	1
Amp_20q11.21	Del_11q23.3	0.89	1
CSMD3	KDM6A	0.891	1
ELF3	FBXW7	0.891	1
ELF3	Amp_1p34.2	0.891	1
ERBB2	ERBB3	0.891	1
HES1	Amp_12q15	0.891	1
MLL	PKHD1	0.891	1
MLL	Amp_6q21	0.891	1
MLL2	RAI1	0.891	1
PARD3	Amp_7p21.1	0.891	1
PARD3	Del_6q27	0.891	1
PKHD1	Amp_12q15	0.891	1
PKHD1	Del_6p25.3	0.891	1
RB1	RPTN	0.891	1
RHOA	TP53	0.891	1
RXRA	Del_16q23.1	0.891	1
SHANK1	TP53	0.891	1
3p-Amp	Amp_20q11.21	0.891	1
22q-Del	Amp_13q22.1	0.891	1
Amp_1p34.2	Amp_17q23.3	0.891	1
Amp_1q23.3	Del_4q34.2	0.891	1
Amp_11q22.2	Amp_13q22.1	0.891	1
Amp_11q22.2	Del_6p25.3	0.891	1
ARID1A	22q-Del	0.892	1
BCL2L1	HES1	0.892	1
BCL2L1	ZBTB7B	0.892	1
BCL2L1	Amp_6q21	0.892	1
CNOT1	Del_13q14.2	0.892	1
EP300	Del_16q23.1	0.892	1
ERCC2	11q-Del	0.892	1
PARD3	17p-Del	0.892	1
RAI1	Del_13q14.2	0.892	1
SCARF2	Del_18q23	0.892	1
7q-Amp	Del_4q22.1	0.892	1
11p-Del	Amp_13q22.1	0.892	1
19p-Del	Amp_5p15.33	0.892	1
19p-Del	Del_18q23	0.892	1
5q-Del	Amp_7p21.1	0.892	1
5q-Del	Del_11q25	0.892	1
Amp_5p15.33	Amp_11q22.2	0.892	1
ASXL2	KRAS	0.893	1
ATM	Del_4q22.1	0.893	1
C3orf70	EP300	0.893	1
C3orf70	17p-Del	0.893	1
CTNNB1	TXNIP	0.893	1
DNAH6	FOXQ1	0.893	1
DNAH6	THRAP3	0.893	1
EP300	3p-Amp	0.893	1
ERCC2	PLCXD3	0.893	1
FAM47C	Del_2q22.1	0.893	1
FOXQ1	HRAS	0.893	1
GNA13	18q-Del	0.893	1
HES1	Amp_5p15.33	0.893	1
HRAS	THRAP3	0.893	1
IDH1	Amp_22q12.2	0.893	1
KLF5	6q-Del	0.893	1
METTL3	17p-Del	0.893	1
PTEN	TXNIP	0.893	1
RHOB	Del_11p15.5	0.893	1
RUNX1	Amp_17q12	0.893	1
STAG2	5q-Del	0.893	1
TXNIP	Del_5q12.1	0.893	1
ZNF185	Del_3p14.2	0.893	1
17q-Amp	Del_14q24.1	0.893	1
20p-Amp	Del_14q24.1	0.893	1
3p-Amp	11p-Del	0.893	1
3q-Amp	Del_15q13.1	0.893	1
8p-Del	Amp_22q12.2	0.893	1
9p-Del	Amp_1q21.3	0.893	1
Amp_17q12	Del_Xp11.3	0.893	1
Del_14q24.1	Del_Xq21.33	0.893	1
ATM	CTNNB1	0.894	1
CNNM4	Amp_7p21.1	0.894	1
CNNM4	Del_6q27	0.894	1
CNNM4	Del_11q25	0.894	1
CNOT1	5q-Del	0.894	1
CNOT1	Del_19p13.3	0.894	1
CREBBP	NF2	0.894	1
FAM47C	5q-Del	0.894	1
FBXW7	TXNIP	0.894	1
FOXQ1	Del_4q34.2	0.894	1
MLL	Del_4q34.2	0.894	1
PKHD1	RPTN	0.894	1
PTEN	Amp_8q22.3	0.894	1
RBM10	11q-Del	0.894	1
RBM10	5q-Del	0.894	1
SF1	Amp_7p21.1	0.894	1
TXNIP	Amp_1p34.2	0.894	1
17q-Amp	Del_9p23	0.894	1
1q-Amp	Del_4q34.2	0.894	1
7q-Amp	Amp_10p14	0.894	1
Amp_8q22.3	Del_1p36.11	0.894	1
CDKN2A	Del_2q34	0.895	1
DNAH6	Amp_17q23.3	0.895	1
ELF3	TXNIP	0.895	1
HLA-A	10q-Del	0.895	1
HLA-A	6q-Del	0.895	1
KLF5	PIK3CA	0.895	1
NRAS	3q-Amp	0.895	1
NUDT11	6q-Del	0.895	1
PIK3CA	4q-Del	0.895	1
UNC93B1	3q-Amp	0.895	1
UNC93B1	10q-Del	0.895	1
18q-Del	Del_11q23.3	0.895	1
Amp_3q26.33	Amp_4p16.3	0.895	1
Amp_4p16.3	Amp_11q13.3	0.895	1
Amp_8p11.21	Del_18q23	0.895	1
C3orf70	KRAS	0.896	1
C3orf70	RUNX1	0.896	1
C3orf70	14q-Del	0.896	1
C3orf70	4p-Del	0.896	1
C3orf70	Del_Xp11.3	0.896	1
CUL1	KRAS	0.896	1
CUL1	14q-Del	0.896	1
EP300	10q-Del	0.896	1
FOXQ1	TSC1	0.896	1
KLF5	7q-Amp	0.896	1
KRAS	3p-Amp	0.896	1
METTL3	Del_Xp11.3	0.896	1
RBM10	Del_8p23.3	0.896	1
RPTN	Amp_8p11.21	0.896	1
RPTN	Del_2q22.1	0.896	1
RUNX1	3p-Amp	0.896	1
SPTAN1	Del_4q22.1	0.896	1
19q-Amp	Amp_8p11.21	0.896	1
20p-Amp	Del_9p21.3	0.896	1
3q-Amp	11p-Del	0.896	1
3q-Amp	Del_2q34	0.896	1
7q-Amp	4q-Del	0.896	1
Amp_3p25.2	Del_16p13.3	0.896	1
Amp_4q13.3	Amp_8p11.21	0.896	1
Amp_8p11.21	Del_7q36.3	0.896	1
ARID1A	PTEN	0.897	1
ARID1A	1q-Amp	0.897	1
ASXL2	Amp_3q26.33	0.897	1
ASXL2	Del_10q23.31	0.897	1
C3orf70	Amp_12q15	0.897	1
CNNM4	PARD3	0.897	1
FBXW7	Amp_22q12.2	0.897	1
HES1	PSIP1	0.897	1
HLA-A	PLCXD3	0.897	1
KDM6A	MLL3	0.897	1
METTL3	Amp_12q15	0.897	1
METTL3	Del_6p25.3	0.897	1
MLL	3p-Amp	0.897	1
NF2	PARD3	0.897	1
NRAS	PLCXD3	0.897	1
NUDT11	PLCXD3	0.897	1
PLCXD3	UNC93B1	0.897	1
RHOB	18q-Del	0.897	1
SF1	Del_12p13.1	0.897	1
ZBTB7B	7q-Amp	0.897	1
20p-Amp	9p-Del	0.897	1
3p-Amp	Amp_12q15	0.897	1
Amp_8p11.21	Del_4q34.2	0.897	1
Del_2q22.1	Del_4q34.2	0.897	1
Del_4q34.2	Del_9p23	0.897	1
ARID1A	RB1	0.898	1
ERBB2	17p-Del	0.898	1
ERBB3	3q-Amp	0.898	1
ERBB3	6q-Del	0.898	1
ERBB3	Del_15q13.1	0.898	1
PLCXD3	Del_4q22.1	0.898	1
Amp_8p11.21	Del_9p23	0.898	1
Del_2q22.1	Del_9p23	0.898	1
Del_12p13.1	Del_18q23	0.898	1
CNNM4	ELF3	0.899	1
CNNM4	Del_3p14.2	0.899	1
DNAH6	Del_13q14.2	0.899	1
ELF3	Del_12p13.1	0.899	1
METTL3	8q-Amp	0.899	1
METTL3	Del_18q23	0.899	1
MLL2	RPTN	0.899	1
NF1	Amp_11q13.3	0.899	1
Amp_1p34.2	Amp_8p11.23	0.899	1
Amp_13q22.1	Del_11p15.5	0.899	1
Del_3p14.2	Del_12p13.1	0.899	1
ASXL2	PSIP1	0.9	1
CDKN1A	Del_Xp11.3	0.9	1
ERBB2	Amp_5p15.33	0.9	1
ERCC2	GNA13	0.9	1
ERCC2	17q-Amp	0.9	1
ERCC2	Del_1q32.1	0.9	1
ERCC2	Del_Xq21.33	0.9	1
GNA13	Del_8p21.3	0.9	1
MBD1	RHOA	0.9	1
NF1	RXRA	0.9	1
PIK3CA	Del_22q13.32	0.9	1
PSIP1	Amp_1q21.3	0.9	1
PSIP1	Amp_17q12	0.9	1
RHOA	TMCO4	0.9	1
RHOA	17q-Amp	0.9	1
RUNX1	Del_19p13.3	0.9	1
RXRA	20p-Amp	0.9	1
SHANK1	TMCO4	0.9	1
SHANK1	Del_Xq21.33	0.9	1
20p-Amp	16p-Del	0.9	1
20p-Amp	Amp_17q23.3	0.9	1
Amp_1q21.3	Amp_7p11.2	0.9	1
Amp_3q26.33	Del_10q23.31	0.9	1
Amp_6q21	Amp_10p14	0.9	1
Amp_17q23.3	Del_22q13.32	0.9	1
Del_1q32.1	Del_8p21.3	0.9	1
Del_2q22.1	Del_3p14.2	0.9	1
ARID1A	ZNF185	0.901	1
BCL2L1	CNNM4	0.901	1
BCL2L1	CSMD3	0.901	1
BCL2L1	NF2	0.901	1
BCL2L1	SF1	0.901	1
BCL2L1	Amp_8p11.23	0.901	1
CSMD3	KRAS	0.901	1
CSMD3	Del_Xp11.3	0.901	1
ERBB2	RAI1	0.901	1
ERBB3	Amp_7p21.1	0.901	1
ERBB3	Del_6q27	0.901	1
IDH1	RXRA	0.901	1
KRAS	Del_16p13.3	0.901	1
MBD1	11p-Del	0.901	1
MBD1	17p-Del	0.901	1
NRAS	Amp_16p13.2	0.901	1
PKHD1	UNC93B1	0.901	1
PKHD1	20p-Amp	0.901	1
RBM10	Amp_19q12	0.901	1
RHOA	ZFP36L1	0.901	1
RUNX1	STAG2	0.901	1
UNC93B1	Amp_16p13.2	0.901	1
ZNF185	Amp_7p11.2	0.901	1
20p-Amp	Amp_16p13.2	0.901	1
3q-Amp	Del_8p21.3	0.901	1
8q-Amp	Amp_12q15	0.901	1
11p-Del	Del_1q32.1	0.901	1
14q-Del	Amp_5p15.33	0.901	1
17p-Del	Del_Xq21.33	0.901	1
5q-Del	Amp_17q23.3	0.901	1
Del_16p13.3	Del_Xp11.3	0.901	1
Del_16q23.1	Del_18q23	0.901	1
ELF3	Amp_8p11.23	0.902	1
ERBB2	RPTN	0.902	1
FOXA1	Del_2q37.1	0.902	1
GNA13	PIK3CA	0.902	1
MLL3	PTEN	0.902	1
NF1	RPTN	0.902	1
NF1	19q-Amp	0.902	1
NF1	Amp_4q13.3	0.902	1
NF1	Del_7q36.3	0.902	1
PIK3CA	TMCO4	0.902	1
SCARF2	ZNF185	0.902	1
ZNF185	19p-Del	0.902	1
Amp_6p22.3	Del_15q13.1	0.902	1
Amp_7p11.2	Del_8p21.3	0.902	1
Amp_8p11.23	Del_13q14.2	0.902	1
ARID1A	Amp_3p25.2	0.903	1
FOXA1	10q-Del	0.903	1
FOXA1	6q-Del	0.903	1
FOXQ1	3q-Amp	0.903	1
FOXQ1	6q-Del	0.903	1
KIAA1267	Amp_6p22.3	0.903	1
NRAS	Amp_1q23.3	0.903	1
PIK3CA	Amp_4p16.3	0.903	1
PLCXD3	Amp_17q12	0.903	1
PTEN	10q-Del	0.903	1
PTEN	Del_15q13.1	0.903	1
RHOB	Del_8p21.3	0.903	1
RPTN	Del_8p23.3	0.903	1
RXRA	Amp_6p22.3	0.903	1
THRAP3	Del_15q13.1	0.903	1
UNC93B1	Amp_1q23.3	0.903	1
1q-Amp	10q-Del	0.903	1
1q-Amp	6q-Del	0.903	1
8q-Amp	Amp_11q13.3	0.903	1
10q-Del	Del_1p36.11	0.903	1
6q-Del	Del_1p36.11	0.903	1
8p-Del	Amp_7p11.2	0.903	1
Amp_3q26.33	Del_18q23	0.903	1
Amp_4p16.3	Amp_8q22.3	0.903	1
Amp_6p22.3	Amp_11q22.2	0.903	1
CUL1	20p-Amp	0.904	1
ELF3	5p-Amp	0.904	1
EP300	Del_4q34.2	0.904	1
ERBB3	18q-Del	0.904	1
NUDT11	8p-Del	0.904	1
RXRA	Amp_11q13.3	0.904	1
TXNIP	5p-Amp	0.904	1
UNC93B1	8p-Del	0.904	1
20q-Amp	15q-Del	0.904	1
20q-Amp	Del_15q13.1	0.904	1
3p-Amp	Del_22q13.32	0.904	1
3q-Amp	Del_18q23	0.904	1
8q-Amp	6q-Del	0.904	1
15q-Del	Del_11q23.3	0.904	1
22q-Del	Amp_3q26.33	0.904	1
6q-Del	Amp_16p13.2	0.904	1
Amp_6q21	Del_17p12	0.904	1
Amp_16p13.2	Del_15q13.1	0.904	1
Del_4q22.1	Del_9p23	0.904	1
C3orf70	CDKN2A	0.905	1
C3orf70	RHOB	0.905	1
CDKN2A	METTL3	0.905	1
CDKN2A	3p-Amp	0.905	1
CNNM4	CNOT1	0.905	1
CNNM4	FAM47C	0.905	1
CNNM4	MLL3	0.905	1
CNNM4	RAI1	0.905	1
CNOT1	NF2	0.905	1
CTNNB1	19q-Amp	0.905	1
DNAH6	KDM6A	0.905	1
FOXA1	Amp_4q13.3	0.905	1
FOXQ1	19q-Amp	0.905	1
FOXQ1	Del_7q36.3	0.905	1
GNA13	Del_18q23	0.905	1
METTL3	RHOB	0.905	1
NF1	TSC1	0.905	1
NF1	Del_13q14.2	0.905	1
NF2	RAI1	0.905	1
NF2	RBM10	0.905	1
PTEN	RPTN	0.905	1
PTEN	19q-Amp	0.905	1
PTEN	Amp_4q13.3	0.905	1
PTEN	Del_7q36.3	0.905	1
RPTN	1q-Amp	0.905	1
SF1	Del_2q37.1	0.905	1
THRAP3	Amp_4q13.3	0.905	1
TSC1	18q-Del	0.905	1
ZNF185	Amp_12q15	0.905	1
20p-Amp	11p-Del	0.905	1
11q-Del	Del_13q14.2	0.905	1
17p-Del	Del_22q13.32	0.905	1
5q-Del	Del_13q14.2	0.905	1
Amp_8p11.21	Amp_20q11.21	0.905	1
Amp_17q23.3	Del_9p21.3	0.905	1
ARID1B	RB1	0.906	1
ATM	Amp_17q12	0.906	1
CDKN2A	ERCC2	0.906	1
CNOT1	RBM10	0.906	1
FOXA1	Del_2q34	0.906	1
FOXQ1	Del_2q34	0.906	1
HRAS	RUNX1	0.906	1
IDH1	20q-Amp	0.906	1
KLF5	Amp_13q22.1	0.906	1
KLF5	Del_6p25.3	0.906	1
METTL3	Amp_3p25.2	0.906	1
PARD3	7q-Amp	0.906	1
RUNX1	TXNIP	0.906	1
THRAP3	Del_2q34	0.906	1
TMCO4	Del_4q22.1	0.906	1
TP53	7p-Amp	0.906	1
1q-Amp	Del_2q34	0.906	1
3q-Amp	Del_12p13.1	0.906	1
5p-Amp	Del_2q37.1	0.906	1
7p-Amp	Amp_13q22.1	0.906	1
7q-Amp	Del_12p13.1	0.906	1
15q-Del	9q-Del	0.906	1
Del_4q22.1	Del_Xq21.33	0.906	1
BCL2L1	Amp_3q26.33	0.907	1
CDKN1A	PLCXD3	0.907	1
CDKN2A	4p-Del	0.907	1
HLA-A	NF1	0.907	1
HLA-A	9q-Del	0.907	1
KRAS	Amp_19q13.43	0.907	1
MBD1	MLL2	0.907	1
NF1	NRAS	0.907	1
NF1	NUDT11	0.907	1
NF1	UNC93B1	0.907	1
NRAS	Del_5q12.1	0.907	1
PLCXD3	11q-Del	0.907	1
PLCXD3	5q-Del	0.907	1
PLCXD3	Amp_3p25.2	0.907	1
RHOB	SCARF2	0.907	1
RHOB	19p-Del	0.907	1
RHOB	4p-Del	0.907	1
TP53	3q-Amp	0.907	1
TP53	10q-Del	0.907	1
UNC93B1	Del_5q12.1	0.907	1
Amp_5p15.33	Del_2q37.1	0.907	1
Amp_19q13.43	Del_Xp11.3	0.907	1
ARID1B	IDH1	0.908	1
ASXL2	SPTAN1	0.908	1
CREBBP	RAI1	0.908	1
CREBBP	RPTN	0.908	1
DNAH6	SPTAN1	0.908	1
ERBB2	Del_4q34.2	0.908	1
FGFR3	SCARF2	0.908	1
FGFR3	19p-Del	0.908	1
IDH1	Amp_6p22.3	0.908	1
PSIP1	Del_19p13.3	0.908	1
RBM10	Del_11q25	0.908	1
STAG2	19p-Del	0.908	1
TSC1	Del_9p23	0.908	1
19q-Amp	Del_6q27	0.908	1
19q-Amp	Del_11q25	0.908	1
7q-Amp	5q-Del	0.908	1
19p-Del	Amp_8p11.23	0.908	1
Amp_1q21.3	Amp_8p11.23	0.908	1
Amp_7p11.2	Amp_17q12	0.908	1
Amp_10p14	Del_6p25.3	0.908	1
ARID1A	Del_2q34	0.909	1
BCL2L1	Amp_8q22.3	0.909	1
CDKN1A	Del_2q37.1	0.909	1
FBXW7	NFE2L2	0.909	1
FBXW7	16p-Del	0.909	1
FBXW7	22q-Del	0.909	1
FBXW7	Del_7q36.3	0.909	1
FOXA1	Del_17p12	0.909	1
KDM6A	SF1	0.909	1
KIAA1267	Del_17p12	0.909	1
MLL3	11q-Del	0.909	1
MLL3	Amp_1q21.3	0.909	1
RPTN	Amp_1p34.2	0.909	1
ZNF185	20p-Amp	0.909	1
15q-Del	Amp_5p15.33	0.909	1
16p-Del	Amp_20q11.21	0.909	1
9q-Del	Amp_1q23.3	0.909	1
Amp_1p34.2	Amp_11q22.2	0.909	1
Amp_1p34.2	Del_7q36.3	0.909	1
Amp_8q22.3	Del_2q37.1	0.909	1
BCL2L1	Del_4q34.2	0.91	1
C3orf70	MBD1	0.91	1
C3orf70	Del_1q32.1	0.91	1
C3orf70	Del_Xq21.33	0.91	1
CNNM4	Amp_7p11.2	0.91	1
CTNNB1	Amp_16p13.2	0.91	1
CUL1	17q-Amp	0.91	1
ELF3	ERBB2	0.91	1
EP300	Amp_7p21.1	0.91	1
ERBB3	3p-Amp	0.91	1
ERBB3	Amp_16p13.2	0.91	1
GNA13	METTL3	0.91	1
IDH1	Amp_8p11.21	0.91	1
IDH1	Del_2q22.1	0.91	1
MBD1	METTL3	0.91	1
METTL3	Del_1q32.1	0.91	1
METTL3	Del_Xq21.33	0.91	1
RBM10	11p-Del	0.91	1
RHOA	RXRA	0.91	1
RHOA	16p-Del	0.91	1
RHOB	17p-Del	0.91	1
RUNX1	Amp_3p25.2	0.91	1
TP53	Amp_8p11.23	0.91	1
3p-Amp	Del_1q32.1	0.91	1
3p-Amp	Del_Xq21.33	0.91	1
Amp_8q22.3	Del_13q14.2	0.91	1
Del_8p23.3	Del_Xq21.33	0.91	1
ASXL2	4p-Del	0.911	1
ATM	Amp_11q13.3	0.911	1
BCL2L1	IDH1	0.911	1
CDKN1A	Del_9p21.3	0.911	1
CTNNB1	20q-Amp	0.911	1
FAM47C	Del_11p15.5	0.911	1
KIAA1267	Del_4q34.2	0.911	1
RPTN	8p-Del	0.911	1
RUNX1	Amp_3q26.33	0.911	1
RXRA	Del_4q34.2	0.911	1
TP53	Del_2q37.1	0.911	1
TXNIP	14q-Del	0.911	1
UNC93B1	Del_13q14.2	0.911	1
20q-Amp	Del_1p36.11	0.911	1
7q-Amp	Del_13q14.2	0.911	1
11q-Del	Del_10q23.31	0.911	1
15q-Del	Del_13q14.2	0.911	1
4p-Del	Amp_7p21.1	0.911	1
Amp_1q21.3	Del_18q23	0.911	1
Amp_1q23.3	Amp_4q13.3	0.911	1
Del_10q23.31	Del_Xp11.3	0.911	1
ASXL2	TMCO4	0.912	1
ASXL2	Del_1q32.1	0.912	1
CDKN2A	MLL3	0.912	1
FBXW7	HLA-A	0.912	1
HLA-A	Amp_1p34.2	0.912	1
PLCXD3	Amp_19q13.43	0.912	1
RHOB	Del_2q37.1	0.912	1
UNC93B1	Amp_1p34.2	0.912	1
5p-Amp	Amp_8p11.23	0.912	1
Amp_17q12	Del_Xq21.33	0.912	1
ARID1A	Del_8p21.3	0.913	1
ASXL2	CDKN1A	0.913	1
CNNM4	PSIP1	0.913	1
CNNM4	7q-Amp	0.913	1
FGFR3	Del_17p12	0.913	1
HLA-A	ZNF185	0.913	1
NRAS	ZNF185	0.913	1
NUDT11	ZNF185	0.913	1
RB1	4p-Del	0.913	1
RXRA	Amp_8q22.3	0.913	1
SF1	15q-Del	0.913	1
TSC1	Del_Xp11.3	0.913	1
UNC93B1	ZNF185	0.913	1
20q-Amp	Del_9p21.3	0.913	1
3q-Amp	Amp_8p11.21	0.913	1
11q-Del	Amp_1q21.3	0.913	1
16p-Del	Amp_8q22.3	0.913	1
18q-Del	Amp_1q23.3	0.913	1
9q-Del	Del_2q22.1	0.913	1
Amp_1q21.3	Del_19p13.3	0.913	1
Del_2q22.1	Del_5q12.1	0.913	1
Del_2q22.1	Del_15q13.1	0.913	1
ARID1B	20p-Amp	0.914	1
CNOT1	Amp_17q23.3	0.914	1
CNOT1	Del_3p14.2	0.914	1
DNAH6	MLL	0.914	1
DNAH6	Amp_12q15	0.914	1
ELF3	RPTN	0.914	1
EP300	HRAS	0.914	1
FAM47C	Del_3p14.2	0.914	1
HES1	RHOA	0.914	1
METTL3	ZFP36L1	0.914	1
METTL3	Amp_22q12.2	0.914	1
SCARF2	Amp_22q12.2	0.914	1
SHANK1	Del_10q23.31	0.914	1
TXNIP	Del_6p25.3	0.914	1
TXNIP	Del_16q23.1	0.914	1
ZFP36L1	19p-Del	0.914	1
20p-Amp	8q-Amp	0.914	1
20p-Amp	Del_11p15.5	0.914	1
8q-Amp	Del_22q13.32	0.914	1
17p-Del	Amp_17q12	0.914	1
19p-Del	Amp_22q12.2	0.914	1
Amp_1p34.2	Del_5q12.1	0.914	1
Amp_13q22.1	Del_2q34	0.914	1
ARID1B	MLL2	0.915	1
CNNM4	MLL	0.915	1
CNNM4	Amp_13q22.1	0.915	1
CUL1	Del_8p21.3	0.915	1
IDH1	PARD3	0.915	1
KLF5	MLL2	0.915	1
METTL3	Del_8p21.3	0.915	1
NF2	Del_16q23.1	0.915	1
RB1	Amp_17q12	0.915	1
RHOB	Del_4q22.1	0.915	1
SF1	Del_16q23.1	0.915	1
3p-Amp	Del_8p21.3	0.915	1
C3orf70	Del_17p12	0.916	1
CDKN2A	8q-Amp	0.916	1
CNOT1	PSIP1	0.916	1
CNOT1	15q-Del	0.916	1
CSMD3	Amp_6p22.3	0.916	1
CTNNB1	1q-Amp	0.916	1
FAM47C	15q-Del	0.916	1
FOXA1	PTEN	0.916	1
FOXA1	THRAP3	0.916	1
FOXA1	1q-Amp	0.916	1
FOXQ1	THRAP3	0.916	1
FOXQ1	1q-Amp	0.916	1
FOXQ1	Amp_8p11.21	0.916	1
FOXQ1	Del_2q22.1	0.916	1
MLL2	Amp_7p11.2	0.916	1
PSIP1	RAI1	0.916	1
PSIP1	RBM10	0.916	1
PTEN	RB1	0.916	1
PTEN	Del_1p36.11	0.916	1
PTEN	Del_2q22.1	0.916	1
RBM10	15q-Del	0.916	1
RHOB	8q-Amp	0.916	1
RUNX1	Del_4q34.2	0.916	1
SCARF2	Amp_11q13.3	0.916	1
THRAP3	1q-Amp	0.916	1
THRAP3	Del_1p36.11	0.916	1
19q-Amp	9q-Del	0.916	1
19q-Amp	Del_Xp11.3	0.916	1
20q-Amp	Amp_3p25.2	0.916	1
3q-Amp	Del_14q24.1	0.916	1
10q-Del	Del_14q24.1	0.916	1
18q-Del	Del_16p13.3	0.916	1
8p-Del	Del_6p25.3	0.916	1
Amp_3p25.2	Del_4q22.1	0.916	1
Amp_4q13.3	Del_5q12.1	0.916	1
Amp_4q13.3	Del_Xp11.3	0.916	1
Amp_6p22.3	Amp_8p11.23	0.916	1
Amp_8p11.21	Del_1p36.11	0.916	1
Del_1p36.11	Del_2q22.1	0.916	1
Del_5q12.1	Del_7q36.3	0.916	1
FAT1	PKHD1	0.917	1
FAT1	ZFP36L1	0.917	1
PIK3CA	Del_12p13.1	0.917	1
PLCXD3	TSC1	0.917	1
PTEN	TP53	0.917	1
RXRA	Del_5q12.1	0.917	1
20q-Amp	Amp_22q12.2	0.917	1
11p-Del	Amp_20q11.21	0.917	1
16p-Del	Del_5q12.1	0.917	1
Amp_1q23.3	Del_Xq21.33	0.917	1
CDKN1A	GNA13	0.918	1
CDKN1A	Del_Xq21.33	0.918	1
ERCC2	Amp_22q12.2	0.918	1
FBXW7	Del_8p23.3	0.918	1
GNA13	5q-Del	0.918	1
GNA13	Amp_1q21.3	0.918	1
MBD1	11q-Del	0.918	1
MBD1	5q-Del	0.918	1
MLL3	NF1	0.918	1
TMCO4	5q-Del	0.918	1
3q-Amp	Del_8p23.3	0.918	1
8q-Amp	Del_8p23.3	0.918	1
5q-Del	Del_Xq21.33	0.918	1
Amp_1q21.3	Del_1q32.1	0.918	1
Amp_5p15.33	Amp_11q13.3	0.918	1
Amp_19q12	Amp_20q11.21	0.918	1
Del_1q32.1	Del_19p13.3	0.918	1
ARID1B	RHOA	0.919	1
CDKN1A	SPTAN1	0.919	1
CDKN2A	TXNIP	0.919	1
CNNM4	Del_22q13.32	0.919	1
CNOT1	Del_15q13.1	0.919	1
DNAH6	Del_Xq21.33	0.919	1
ERCC2	Del_8p23.3	0.919	1
GNA13	TXNIP	0.919	1
HRAS	17q-Amp	0.919	1
HRAS	8q-Amp	0.919	1
PLCXD3	Del_2q37.1	0.919	1
RAI1	3q-Amp	0.919	1
RHOA	4q-Del	0.919	1
SPTAN1	Del_19p13.3	0.919	1
TSC1	Del_11p15.5	0.919	1
TXNIP	Del_1q32.1	0.919	1
TXNIP	Del_18q23	0.919	1
TXNIP	Del_Xq21.33	0.919	1
3q-Amp	Del_Xp11.3	0.919	1
10q-Del	Del_Xp11.3	0.919	1
18q-Del	Del_13q14.2	0.919	1
6q-Del	Del_Xp11.3	0.919	1
ERBB2	3q-Amp	0.92	1
FBXW7	7p-Amp	0.92	1
HRAS	20p-Amp	0.92	1
IDH1	MLL2	0.92	1
KIAA1267	SCARF2	0.92	1
NFE2L2	SCARF2	0.92	1
PARD3	Amp_12q15	0.92	1
PARD3	Del_6p25.3	0.92	1
RHOA	Del_4q34.2	0.92	1
RXRA	SCARF2	0.92	1
SCARF2	16p-Del	0.92	1
TSC1	Amp_8p11.23	0.92	1
3q-Amp	Amp_19q12	0.92	1
11q-Del	4p-Del	0.92	1
16p-Del	19p-Del	0.92	1
19p-Del	Amp_11q22.2	0.92	1
4q-Del	Amp_1p34.2	0.92	1
4q-Del	Amp_3q26.33	0.92	1
4q-Del	Del_10q23.31	0.92	1
Amp_3q26.33	Amp_17q23.3	0.92	1
Amp_7p21.1	Del_3p14.2	0.92	1
Amp_7p11.2	Del_13q14.2	0.92	1
Amp_13q22.1	Del_12p13.1	0.92	1
Del_5q12.1	Del_13q14.2	0.92	1
Del_6p25.3	Del_8p21.3	0.92	1
BCL2L1	SCARF2	0.921	1
BCL2L1	19p-Del	0.921	1
C3orf70	FGFR3	0.921	1
CNNM4	Amp_4p16.3	0.921	1
CSMD3	CUL1	0.921	1
CSMD3	METTL3	0.921	1
ERBB2	THRAP3	0.921	1
ERBB3	7p-Amp	0.921	1
FOXQ1	Amp_19q12	0.921	1
HLA-A	17p-Del	0.921	1
IDH1	Amp_3p25.2	0.921	1
MBD1	Amp_6p22.3	0.921	1
METTL3	STAG2	0.921	1
NRAS	11p-Del	0.921	1
PLCXD3	10q-Del	0.921	1
PLCXD3	Del_15q13.1	0.921	1
SPTAN1	Amp_8p11.21	0.921	1
UNC93B1	17p-Del	0.921	1
17q-Amp	Amp_6p22.3	0.921	1
3p-Amp	Del_16p13.3	0.921	1
8q-Amp	Amp_17q12	0.921	1
Amp_6p22.3	Del_1q32.1	0.921	1
Amp_19q12	Del_1p36.11	0.921	1
C3orf70	NFE2L2	0.922	1
C3orf70	RXRA	0.922	1
C3orf70	Amp_11q22.2	0.922	1
CNOT1	IDH1	0.922	1
CUL1	KIAA1267	0.922	1
CUL1	NFE2L2	0.922	1
FGFR3	20q-Amp	0.922	1
IDH1	RAI1	0.922	1
METTL3	RXRA	0.922	1
MLL	MLL3	0.922	1
PSIP1	Del_17p12	0.922	1
RXRA	3p-Amp	0.922	1
SHANK1	Del_4q22.1	0.922	1
3p-Amp	22q-Del	0.922	1
3p-Amp	Amp_11q22.2	0.922	1
11q-Del	Del_19p13.3	0.922	1
Amp_1q21.3	Amp_4p16.3	0.922	1
Amp_4p16.3	Del_19p13.3	0.922	1
Amp_7p11.2	Del_8p23.3	0.922	1
Amp_13q22.1	Del_11q23.3	0.922	1
ARID1A	Amp_12q15	0.923	1
C3orf70	HES1	0.923	1
C3orf70	Del_14q24.1	0.923	1
CSMD3	TMCO4	0.923	1
CUL1	HES1	0.923	1
CUL1	18q-Del	0.923	1
CUL1	Amp_6q21	0.923	1
FOXQ1	Del_8p21.3	0.923	1
HES1	METTL3	0.923	1
HLA-A	14q-Del	0.923	1
HLA-A	4p-Del	0.923	1
IDH1	Amp_17q23.3	0.923	1
KIAA1267	18q-Del	0.923	1
MBD1	Amp_8p11.23	0.923	1
MBD1	Del_16p13.3	0.923	1
METTL3	MLL2	0.923	1
METTL3	ZBTB7B	0.923	1
METTL3	Amp_6q21	0.923	1
NRAS	14q-Del	0.923	1
NUDT11	14q-Del	0.923	1
STAG2	Del_Xq21.33	0.923	1
TMCO4	Del_16p13.3	0.923	1
UNC93B1	14q-Del	0.923	1
3p-Amp	18q-Del	0.923	1
15q-Del	Del_9p21.3	0.923	1
15q-Del	Del_11q25	0.923	1
18q-Del	Amp_11q22.2	0.923	1
Amp_8p11.23	Del_Xq21.33	0.923	1
Amp_19q13.43	Del_10q23.31	0.923	1
Del_16p13.3	Del_Xq21.33	0.923	1
CNNM4	ERBB3	0.924	1
FBXW7	PTEN	0.924	1
FBXW7	THRAP3	0.924	1
FBXW7	1q-Amp	0.924	1
FOXQ1	Del_9p21.3	0.924	1
KDM6A	Amp_19q13.43	0.924	1
KIAA1267	Del_2q34	0.924	1
NRAS	Del_18q23	0.924	1
NUDT11	Del_18q23	0.924	1
PTEN	Amp_1p34.2	0.924	1
RHOB	Amp_7p21.1	0.924	1
RPTN	4p-Del	0.924	1
19q-Amp	14q-Del	0.924	1
4p-Del	Del_7q36.3	0.924	1
9p-Del	Del_12p13.1	0.924	1
Amp_1p34.2	Amp_8q22.3	0.924	1
Amp_1p34.2	Del_1p36.11	0.924	1
Amp_1q23.3	Amp_5p15.33	0.924	1
Del_8p23.3	Del_11q25	0.924	1
ASXL2	Del_22q13.32	0.925	1
BCL2L1	Amp_19q12	0.925	1
EP300	TP53	0.925	1
ERCC2	3q-Amp	0.925	1
PLCXD3	ZNF185	0.925	1
RPTN	SPTAN1	0.925	1
RPTN	5p-Amp	0.925	1
17q-Amp	Amp_20q11.21	0.925	1
20q-Amp	Del_8p23.3	0.925	1
7q-Amp	Amp_3p25.2	0.925	1
14q-Del	Amp_20q11.21	0.925	1
ARID1B	ATM	0.926	1
CREBBP	PTEN	0.926	1
CREBBP	1q-Amp	0.926	1
EP300	Del_2q34	0.926	1
FAM47C	MLL3	0.926	1
FAM47C	PKHD1	0.926	1
FOXA1	Del_6q27	0.926	1
FOXA1	Del_11q25	0.926	1
FOXQ1	KRAS	0.926	1
FOXQ1	Del_6q27	0.926	1
FOXQ1	Del_Xp11.3	0.926	1
HRAS	ZFP36L1	0.926	1
KLF5	SCARF2	0.926	1
KLF5	19p-Del	0.926	1
KRAS	PTEN	0.926	1
KRAS	1q-Amp	0.926	1
PIK3CA	SHANK1	0.926	1
PKHD1	PLCXD3	0.926	1
PTEN	Amp_7p21.1	0.926	1
PTEN	Del_6q27	0.926	1
RAI1	Amp_4p16.3	0.926	1
RBM10	Del_2q37.1	0.926	1
RUNX1	1q-Amp	0.926	1
SCARF2	7p-Amp	0.926	1
THRAP3	Del_6q27	0.926	1
TMCO4	Del_9p21.3	0.926	1
17q-Amp	Del_9p21.3	0.926	1
1q-Amp	Del_6q27	0.926	1
3p-Amp	Del_8p23.3	0.926	1
5q-Del	Amp_20q11.21	0.926	1
Amp_4p16.3	Del_2q22.1	0.926	1
Amp_16p13.2	Del_Xp11.3	0.926	1
Amp_22q12.2	Del_4q22.1	0.926	1
Del_1p36.11	Del_6q27	0.926	1
Del_1p36.11	Del_11q25	0.926	1
Del_2q37.1	Del_Xp11.3	0.926	1
ARID1A	FBXW7	0.927	1
ARID1A	Del_Xp11.3	0.927	1
EP300	MLL3	0.927	1
EP300	15q-Del	0.927	1
ERCC2	STAG2	0.927	1
KRAS	Amp_5p15.33	0.927	1
NFE2L2	4p-Del	0.927	1
PLCXD3	RB1	0.927	1
PSIP1	17p-Del	0.927	1
RXRA	14q-Del	0.927	1
SF1	Amp_5p15.33	0.927	1
11q-Del	Amp_12q15	0.927	1
5q-Del	Del_6p25.3	0.927	1
Amp_1p34.2	Amp_1q23.3	0.927	1
Amp_1q23.3	Del_10q23.31	0.927	1
Amp_5p15.33	Del_Xp11.3	0.927	1
Amp_13q22.1	Del_19p13.3	0.927	1
Del_16q23.1	Del_19p13.3	0.927	1
ARID1A	DNAH6	0.928	1
ASXL2	SHANK1	0.928	1
BCL2L1	MLL2	0.928	1
CREBBP	10q-Del	0.928	1
CTNNB1	Amp_10p14	0.928	1
DNAH6	Amp_3p25.2	0.928	1
DNAH6	Amp_5p15.33	0.928	1
GNA13	19q-Amp	0.928	1
IDH1	PSIP1	0.928	1
IDH1	15q-Del	0.928	1
MBD1	RPTN	0.928	1
MBD1	Amp_4q13.3	0.928	1
NF2	RHOA	0.928	1
PARD3	RHOA	0.928	1
PTEN	Amp_10p14	0.928	1
RHOA	SF1	0.928	1
RHOB	UNC93B1	0.928	1
RPTN	TMCO4	0.928	1
RPTN	17q-Amp	0.928	1
RPTN	Del_1q32.1	0.928	1
RPTN	Del_Xq21.33	0.928	1
SF1	SHANK1	0.928	1
TMCO4	Del_7q36.3	0.928	1
17q-Amp	Amp_4q13.3	0.928	1
19q-Amp	Del_1q32.1	0.928	1
20p-Amp	Amp_12q15	0.928	1
3q-Amp	Del_6q27	0.928	1
14q-Del	Amp_19q13.43	0.928	1
19p-Del	Del_2q34	0.928	1
6q-Del	Amp_1q23.3	0.928	1
6q-Del	Amp_7p21.1	0.928	1
Amp_1q23.3	Del_15q13.1	0.928	1
Amp_4q13.3	Del_Xq21.33	0.928	1
Amp_7p21.1	Del_15q13.1	0.928	1
Amp_13q22.1	Amp_20q11.21	0.928	1
Amp_20q11.21	Del_16q23.1	0.928	1
Amp_20q11.21	Del_18q23	0.928	1
Del_6p25.3	Del_9p23	0.928	1
ERCC2	METTL3	0.929	1
ERCC2	MLL3	0.929	1
ERCC2	3p-Amp	0.929	1
FAT1	NF1	0.929	1
NF1	Amp_1q21.3	0.929	1
RUNX1	Amp_8q22.3	0.929	1
7q-Amp	Amp_17q23.3	0.929	1
Amp_1q21.3	Del_3p14.2	0.929	1
Amp_7p21.1	Del_2q37.1	0.929	1
Amp_17q23.3	Del_4q34.2	0.929	1
ARID1B	CUL1	0.93	1
ARID1B	3p-Amp	0.93	1
ASXL2	HES1	0.93	1
ASXL2	Amp_3p25.2	0.93	1
BCL2L1	HLA-A	0.93	1
BCL2L1	NRAS	0.93	1
BCL2L1	NUDT11	0.93	1
BCL2L1	UNC93B1	0.93	1
C3orf70	4q-Del	0.93	1
CDKN2A	5q-Del	0.93	1
EP300	FGFR3	0.93	1
ERBB2	SPTAN1	0.93	1
ERCC2	RXRA	0.93	1
FAT1	Del_Xp11.3	0.93	1
FOXQ1	MLL2	0.93	1
METTL3	4q-Del	0.93	1
MLL2	THRAP3	0.93	1
MLL2	Del_1p36.11	0.93	1
PSIP1	Amp_1q23.3	0.93	1
PSIP1	Del_15q13.1	0.93	1
RHOB	Del_19p13.3	0.93	1
RXRA	Del_11p15.5	0.93	1
SHANK1	Del_2q34	0.93	1
19q-Amp	Amp_12q15	0.93	1
20q-Amp	Amp_11q22.2	0.93	1
3p-Amp	7p-Amp	0.93	1
16p-Del	Del_11p15.5	0.93	1
16p-Del	Del_11q23.3	0.93	1
Amp_1q21.3	Del_7q36.3	0.93	1
Amp_1q21.3	Del_11q23.3	0.93	1
Amp_4q13.3	Del_16q23.1	0.93	1
Amp_12q15	Del_7q36.3	0.93	1
Amp_13q22.1	Del_7q36.3	0.93	1
Amp_20q11.21	Del_6q27	0.93	1
Amp_20q11.21	Del_11q25	0.93	1
Del_6p25.3	Del_7q36.3	0.93	1
Del_7q36.3	Del_16q23.1	0.93	1
ARID1A	Del_4q34.2	0.931	1
ASXL2	ZNF185	0.931	1
BCL2L1	Del_3p14.2	0.931	1
CDKN2A	Del_3p14.2	0.931	1
CSMD3	MLL3	0.931	1
CUL1	Amp_3q26.33	0.931	1
CUL1	Del_10q23.31	0.931	1
DNAH6	ZBTB7B	0.931	1
ELF3	FOXA1	0.931	1
ELF3	18q-Del	0.931	1
FOXA1	Amp_17q23.3	0.931	1
FOXA1	Del_3p14.2	0.931	1
FOXQ1	Amp_17q23.3	0.931	1
HES1	HRAS	0.931	1
HES1	PIK3CA	0.931	1
KDM6A	RAI1	0.931	1
KDM6A	SHANK1	0.931	1
MLL2	Del_4q22.1	0.931	1
NF1	RUNX1	0.931	1
NF2	8p-Del	0.931	1
PARD3	19p-Del	0.931	1
RB1	Del_8p21.3	0.931	1
RHOB	Amp_1q21.3	0.931	1
SCARF2	Del_11q23.3	0.931	1
SHANK1	Amp_8q22.3	0.931	1
THRAP3	Amp_17q23.3	0.931	1
TP53	Amp_8q22.3	0.931	1
TXNIP	ZBTB7B	0.931	1
ZFP36L1	8q-Amp	0.931	1
1q-Amp	Amp_17q23.3	0.931	1
20q-Amp	19p-Del	0.931	1
3p-Amp	Amp_11q13.3	0.931	1
8p-Del	Amp_10p14	0.931	1
9p-Del	Del_8p21.3	0.931	1
Amp_1q21.3	Amp_5p15.33	0.931	1
Amp_3q26.33	Del_14q24.1	0.931	1
Amp_4p16.3	Amp_19q12	0.931	1
Amp_4p16.3	Amp_20q11.21	0.931	1
Amp_10p14	Amp_17q23.3	0.931	1
Amp_22q12.2	Del_18q23	0.931	1
ASXL2	PIK3CA	0.932	1
ATM	Amp_3p25.2	0.932	1
ERCC2	Amp_7p21.1	0.932	1
ERCC2	Del_6q27	0.932	1
FOXA1	Del_9p23	0.932	1
IDH1	SPTAN1	0.932	1
MBD1	Amp_11q13.3	0.932	1
MLL	MLL2	0.932	1
RB1	Del_2q37.1	0.932	1
RHOA	Amp_10p14	0.932	1
STAG2	10q-Del	0.932	1
TSC1	Amp_17q12	0.932	1
20q-Amp	Del_22q13.32	0.932	1
3q-Amp	Amp_8p11.23	0.932	1
8p-Del	Del_1p36.11	0.932	1
Amp_3q26.33	Del_Xq21.33	0.932	1
Del_10q23.31	Del_Xq21.33	0.932	1
Del_11q23.3	Del_22q13.32	0.932	1
BCL2L1	Amp_1q23.3	0.933	1
CDKN1A	Del_2q34	0.933	1
DNAH6	RXRA	0.933	1
EP300	RPTN	0.933	1
EP300	Del_7q36.3	0.933	1
ERBB3	Del_12p13.1	0.933	1
FAM47C	NF1	0.933	1
FAM47C	Del_6p25.3	0.933	1
FBXW7	PKHD1	0.933	1
FBXW7	Amp_16p13.2	0.933	1
KDM6A	KIAA1267	0.933	1
KIAA1267	TXNIP	0.933	1
RAI1	Del_16q23.1	0.933	1
TXNIP	16p-Del	0.933	1
ZFP36L1	Amp_17q12	0.933	1
19q-Amp	11p-Del	0.933	1
3q-Amp	Del_4q22.1	0.933	1
7p-Amp	Del_5q12.1	0.933	1
17p-Del	Del_7q36.3	0.933	1
6q-Del	Amp_5p15.33	0.933	1
Amp_5p15.33	Del_15q13.1	0.933	1
Del_2q34	Del_19p13.3	0.933	1
Del_4q22.1	Del_15q13.1	0.933	1
ARID1A	UNC93B1	0.934	1
ATM	Del_13q14.2	0.934	1
CDKN1A	SHANK1	0.934	1
ERCC2	PKHD1	0.934	1
GNA13	10q-Del	0.934	1
GNA13	6q-Del	0.934	1
KRAS	Amp_8p11.21	0.934	1
MBD1	6q-Del	0.934	1
MLL3	20p-Amp	0.934	1
PARD3	Del_10q23.31	0.934	1
TMCO4	Del_15q13.1	0.934	1
17q-Amp	6q-Del	0.934	1
19q-Amp	Amp_6p22.3	0.934	1
5p-Amp	Amp_4p16.3	0.934	1
10q-Del	Del_Xq21.33	0.934	1
Amp_12q15	Del_16p13.3	0.934	1
Del_2q22.1	Del_Xp11.3	0.934	1
Del_15q13.1	Del_Xq21.33	0.934	1
ATM	METTL3	0.935	1
ATM	3p-Amp	0.935	1
C3orf70	NF2	0.935	1
C3orf70	Del_4q34.2	0.935	1
CDKN2A	NFE2L2	0.935	1
CNNM4	CUL1	0.935	1
CREBBP	Del_5q12.1	0.935	1
CUL1	NF2	0.935	1
ELF3	3q-Amp	0.935	1
FAT1	SHANK1	0.935	1
IDH1	MLL	0.935	1
IDH1	Amp_4p16.3	0.935	1
KDM6A	Del_1q32.1	0.935	1
KDM6A	Del_4q34.2	0.935	1
METTL3	NF2	0.935	1
METTL3	SF1	0.935	1
METTL3	Del_4q22.1	0.935	1
RHOB	Amp_11q22.2	0.935	1
SHANK1	Del_11q23.3	0.935	1
TSC1	Amp_4p16.3	0.935	1
ZFP36L1	Amp_22q12.2	0.935	1
ZNF185	11q-Del	0.935	1
20p-Amp	5q-Del	0.935	1
20p-Amp	Del_7q36.3	0.935	1
20q-Amp	11p-Del	0.935	1
20q-Amp	Amp_19q12	0.935	1
19p-Del	Del_2q22.1	0.935	1
5q-Del	Amp_6q21	0.935	1
9q-Del	Del_4q22.1	0.935	1
9q-Del	Del_6q27	0.935	1
Amp_1q21.3	Del_12p13.1	0.935	1
Amp_3p25.2	Del_Xq21.33	0.935	1
Amp_4q13.3	Del_22q13.32	0.935	1
Amp_10p14	Amp_17q12	0.935	1
Del_5q12.1	Del_11q25	0.935	1
Del_9p23	Del_19p13.3	0.935	1
ARID1A	Amp_8p11.21	0.936	1
ATM	GNA13	0.936	1
ATM	TMCO4	0.936	1
ATM	Del_1q32.1	0.936	1
CNOT1	PIK3CA	0.936	1
CNOT1	RHOA	0.936	1
CTNNB1	TMCO4	0.936	1
CTNNB1	Del_1q32.1	0.936	1
FAM47C	PIK3CA	0.936	1
FAM47C	SHANK1	0.936	1
FGFR3	NRAS	0.936	1
FOXA1	9q-Del	0.936	1
FOXA1	Del_1q32.1	0.936	1
FOXA1	Del_Xq21.33	0.936	1
FOXQ1	MBD1	0.936	1
FOXQ1	14q-Del	0.936	1
FOXQ1	Del_1q32.1	0.936	1
GNA13	THRAP3	0.936	1
KRAS	RUNX1	0.936	1
MBD1	1q-Amp	0.936	1
NFE2L2	Del_2q22.1	0.936	1
NUDT11	STAG2	0.936	1
NUDT11	Amp_8p11.23	0.936	1
PIK3CA	RBM10	0.936	1
PKHD1	Del_8p23.3	0.936	1
RAI1	RHOA	0.936	1
THRAP3	TMCO4	0.936	1
TMCO4	Del_4q34.2	0.936	1
UNC93B1	Del_16p13.3	0.936	1
ZNF185	Amp_1q21.3	0.936	1
17q-Amp	1q-Amp	0.936	1
20p-Amp	Del_22q13.32	0.936	1
22q-Del	Del_4q22.1	0.936	1
4p-Del	Del_1p36.11	0.936	1
9q-Del	Del_1p36.11	0.936	1
Amp_3p25.2	Amp_7p11.2	0.936	1
Amp_8p11.21	Amp_11q22.2	0.936	1
Amp_13q22.1	Amp_19q13.43	0.936	1
Amp_22q12.2	Del_11q25	0.936	1
Del_1q32.1	Del_4q34.2	0.936	1
Del_17p12	Del_Xp11.3	0.936	1
ARID1A	Amp_8p11.23	0.937	1
CNOT1	CSMD3	0.937	1
CNOT1	SCARF2	0.937	1
CUL1	RB1	0.937	1
EP300	Amp_1p34.2	0.937	1
ERCC2	5p-Amp	0.937	1
FBXW7	RUNX1	0.937	1
FBXW7	Del_Xp11.3	0.937	1
HLA-A	16p-Del	0.937	1
KIAA1267	Del_9p23	0.937	1
KRAS	Amp_1p34.2	0.937	1
METTL3	9p-Del	0.937	1
NRAS	Amp_11q22.2	0.937	1
NUDT11	RXRA	0.937	1
NUDT11	16p-Del	0.937	1
NUDT11	Amp_11q22.2	0.937	1
PKHD1	PSIP1	0.937	1
RAI1	SCARF2	0.937	1
RBM10	SCARF2	0.937	1
RXRA	UNC93B1	0.937	1
ZFP36L1	Amp_4q13.3	0.937	1
19q-Amp	8q-Amp	0.937	1
3p-Amp	9p-Del	0.937	1
7q-Amp	Amp_16p13.2	0.937	1
10q-Del	9q-Del	0.937	1
19p-Del	Amp_1q21.3	0.937	1
4q-Del	Del_2q34	0.937	1
Amp_1p34.2	Del_Xp11.3	0.937	1
Amp_4q13.3	Amp_20q11.21	0.937	1
Amp_4q13.3	Amp_22q12.2	0.937	1
Amp_12q15	Del_8p23.3	0.937	1
Amp_17q12	Del_8p21.3	0.937	1
Amp_22q12.2	Del_7q36.3	0.937	1
CSMD3	8q-Amp	0.938	1
CTNNB1	Amp_1q23.3	0.938	1
DNAH6	STAG2	0.938	1
ELF3	Del_9p23	0.938	1
EP300	Amp_19q13.43	0.938	1
ERBB2	19p-Del	0.938	1
ERBB2	Del_Xp11.3	0.938	1
FOXQ1	Amp_1q23.3	0.938	1
HES1	RPTN	0.938	1
HES1	19q-Amp	0.938	1
KLF5	Del_13q14.2	0.938	1
METTL3	PARD3	0.938	1
METTL3	Del_12p13.1	0.938	1
RUNX1	Amp_19q12	0.938	1
THRAP3	Amp_1q23.3	0.938	1
ZBTB7B	Del_7q36.3	0.938	1
17q-Amp	Del_11p15.5	0.938	1
20p-Amp	Amp_8q22.3	0.938	1
5p-Amp	Del_13q14.2	0.938	1
8q-Amp	Del_16p13.3	0.938	1
4q-Del	Del_13q14.2	0.938	1
8p-Del	Amp_17q23.3	0.938	1
Amp_4q13.3	Amp_6q21	0.938	1
Amp_6q21	Del_7q36.3	0.938	1
Amp_8q22.3	Del_22q13.32	0.938	1
Amp_11q13.3	Del_17p12	0.938	1
Amp_12q15	Amp_19q12	0.938	1
Amp_19q12	Del_16q23.1	0.938	1
Del_1q32.1	Del_11p15.5	0.938	1
ASXL2	Del_17p12	0.939	1
ATM	Del_9p21.3	0.939	1
BCL2L1	MLL	0.939	1
BCL2L1	Amp_12q15	0.939	1
BCL2L1	Amp_13q22.1	0.939	1
CTNNB1	Del_13q14.2	0.939	1
EP300	22q-Del	0.939	1
IDH1	Del_22q13.32	0.939	1
MLL	14q-Del	0.939	1
RAI1	Del_22q13.32	0.939	1
RBM10	Del_22q13.32	0.939	1
TXNIP	Del_17p12	0.939	1
ZBTB7B	Amp_19q13.43	0.939	1
1q-Amp	Del_13q14.2	0.939	1
20p-Amp	Del_2q22.1	0.939	1
20q-Amp	11q-Del	0.939	1
20q-Amp	5q-Del	0.939	1
5p-Amp	Amp_19q12	0.939	1
11p-Del	22q-Del	0.939	1
14q-Del	Del_6p25.3	0.939	1
Amp_3q26.33	Del_16p13.3	0.939	1
Amp_6q21	Amp_19q13.43	0.939	1
Del_2q22.1	Del_8p23.3	0.939	1
ARID1B	DNAH6	0.94	1
ARID1B	ERCC2	0.94	1
ARID1B	HRAS	0.94	1
ASXL2	C3orf70	0.94	1
ASXL2	CUL1	0.94	1
ASXL2	METTL3	0.94	1
BCL2L1	PLCXD3	0.94	1
CTNNB1	Amp_7p11.2	0.94	1
EP300	Amp_3p25.2	0.94	1
ERBB3	RPTN	0.94	1
ERCC2	7p-Amp	0.94	1
FAM47C	Amp_1p34.2	0.94	1
FAT1	Amp_1p34.2	0.94	1
HLA-A	Del_17p12	0.94	1
SHANK1	Amp_8p11.21	0.94	1
SHANK1	Amp_19q13.43	0.94	1
SPTAN1	THRAP3	0.94	1
TMCO4	Amp_16p13.2	0.94	1
TXNIP	7p-Amp	0.94	1
11p-Del	Amp_3p25.2	0.94	1
4q-Del	Amp_3p25.2	0.94	1
9p-Del	Amp_19q13.43	0.94	1
Amp_8p11.23	Amp_19q12	0.94	1
Amp_20q11.21	Del_11p15.5	0.94	1
Del_16q23.1	Del_17p12	0.94	1
BCL2L1	Del_22q13.32	0.941	1
CREBBP	19p-Del	0.941	1
ERBB2	NFE2L2	0.941	1
ERBB3	20q-Amp	0.941	1
SCARF2	Del_6q27	0.941	1
SCARF2	Del_11q25	0.941	1
SHANK1	Amp_1q21.3	0.941	1
SHANK1	Del_5q12.1	0.941	1
SPTAN1	11p-Del	0.941	1
16p-Del	Amp_19q12	0.941	1
Amp_1q21.3	Del_2q22.1	0.941	1
Amp_4p16.3	Del_15q13.1	0.941	1
Amp_20q11.21	Del_3p14.2	0.941	1
ARID1B	NUDT11	0.942	1
ARID1B	20q-Amp	0.942	1
CDKN2A	CTNNB1	0.942	1
CNNM4	DNAH6	0.942	1
FOXQ1	RHOB	0.942	1
HLA-A	KLF5	0.942	1
HLA-A	4q-Del	0.942	1
HRAS	SF1	0.942	1
IDH1	RB1	0.942	1
MLL3	15q-Del	0.942	1
NF2	Del_4q22.1	0.942	1
NUDT11	4q-Del	0.942	1
PLCXD3	4p-Del	0.942	1
PSIP1	19p-Del	0.942	1
PSIP1	Del_2q37.1	0.942	1
SCARF2	7q-Amp	0.942	1
TP53	Del_2q22.1	0.942	1
19q-Amp	Amp_8q22.3	0.942	1
5p-Amp	7p-Amp	0.942	1
15q-Del	19p-Del	0.942	1
15q-Del	Del_2q37.1	0.942	1
8p-Del	Del_12p13.1	0.942	1
Amp_3p25.2	Del_19p13.3	0.942	1
Amp_8q22.3	Del_14q24.1	0.942	1
Del_11q23.3	Del_18q23	0.942	1
ARID1B	RHOB	0.943	1
ASXL2	KIAA1267	0.943	1
ATM	Amp_8q22.3	0.943	1
ERBB2	Amp_8p11.21	0.943	1
ERBB2	Amp_17q12	0.943	1
HES1	STAG2	0.943	1
KDM6A	Amp_8p11.21	0.943	1
MBD1	Del_2q34	0.943	1
MLL3	TXNIP	0.943	1
NF1	15q-Del	0.943	1
PSIP1	RHOA	0.943	1
PSIP1	SHANK1	0.943	1
PTEN	5p-Amp	0.943	1
ZBTB7B	Amp_8p11.23	0.943	1
ZFP36L1	16p-Del	0.943	1
20p-Amp	Amp_19q13.43	0.943	1
Amp_6q21	Amp_8p11.23	0.943	1
Amp_8q22.3	Del_4q34.2	0.943	1
Amp_11q22.2	Amp_22q12.2	0.943	1
Amp_19q13.43	Del_18q23	0.943	1
ARID1A	Amp_8q22.3	0.944	1
BCL2L1	ERBB3	0.944	1
EP300	Del_2q22.1	0.944	1
ERBB2	SHANK1	0.944	1
ERBB3	Del_2q37.1	0.944	1
FOXA1	Del_16q23.1	0.944	1
FOXQ1	Del_6p25.3	0.944	1
GNA13	NF1	0.944	1
GNA13	RUNX1	0.944	1
KRAS	17q-Amp	0.944	1
KRAS	Del_1q32.1	0.944	1
MBD1	RUNX1	0.944	1
MLL	15q-Del	0.944	1
NF1	Del_1q32.1	0.944	1
NFE2L2	Del_7q36.3	0.944	1
PSIP1	Del_16q23.1	0.944	1
PTEN	Del_6p25.3	0.944	1
RHOA	Amp_19q12	0.944	1
RUNX1	Del_1q32.1	0.944	1
SHANK1	Del_13q14.2	0.944	1
TMCO4	Del_Xp11.3	0.944	1
7q-Amp	Amp_12q15	0.944	1
7q-Amp	Del_6p25.3	0.944	1
10q-Del	Amp_3q26.33	0.944	1
11p-Del	Amp_8p11.21	0.944	1
11p-Del	Del_2q22.1	0.944	1
16p-Del	Del_7q36.3	0.944	1
18q-Del	Del_12p13.1	0.944	1
19p-Del	Amp_17q23.3	0.944	1
4q-Del	Del_11p15.5	0.944	1
6q-Del	Amp_3q26.33	0.944	1
9q-Del	Del_3p14.2	0.944	1
Amp_5p15.33	Amp_8q22.3	0.944	1
Amp_11q13.3	Del_15q13.1	0.944	1
Amp_11q22.2	Del_7q36.3	0.944	1
Amp_12q15	Del_1p36.11	0.944	1
Amp_13q22.1	Del_1p36.11	0.944	1
Amp_16p13.2	Amp_17q23.3	0.944	1
Del_1q32.1	Del_Xp11.3	0.944	1
ASXL2	MLL2	0.945	1
ATM	HLA-A	0.945	1
ATM	UNC93B1	0.945	1
C3orf70	RBM10	0.945	1
CNOT1	CUL1	0.945	1
CNOT1	METTL3	0.945	1
CREBBP	TP53	0.945	1
CUL1	5q-Del	0.945	1
CUL1	Del_19p13.3	0.945	1
METTL3	RBM10	0.945	1
MLL	Amp_7p21.1	0.945	1
RAI1	3p-Amp	0.945	1
RBM10	3p-Amp	0.945	1
RHOA	TSC1	0.945	1
SHANK1	TSC1	0.945	1
TP53	Amp_7p21.1	0.945	1
UNC93B1	Del_4q34.2	0.945	1
ZNF185	6q-Del	0.945	1
3p-Amp	11q-Del	0.945	1
4p-Del	Del_9p23	0.945	1
4p-Del	Del_12p13.1	0.945	1
Amp_3q26.33	Amp_20q11.21	0.945	1
Amp_6p22.3	Del_4q22.1	0.945	1
Amp_7p21.1	Amp_13q22.1	0.945	1
Amp_8q22.3	Amp_17q12	0.945	1
ASXL2	NF2	0.946	1
ASXL2	SF1	0.946	1
ATM	SPTAN1	0.946	1
ATM	STAG2	0.946	1
CNNM4	Amp_17q12	0.946	1
CNOT1	Amp_3q26.33	0.946	1
CREBBP	KIAA1267	0.946	1
CTNNB1	HES1	0.946	1
DNAH6	Amp_11q13.3	0.946	1
DNAH6	Del_10q23.31	0.946	1
FAM47C	Amp_11q13.3	0.946	1
FOXQ1	Amp_6q21	0.946	1
MLL	Amp_3p25.2	0.946	1
PTEN	ZBTB7B	0.946	1
THRAP3	ZBTB7B	0.946	1
TXNIP	Del_4q22.1	0.946	1
7p-Amp	Del_4q22.1	0.946	1
11p-Del	Amp_3q26.33	0.946	1
11p-Del	Del_10q23.31	0.946	1
16p-Del	Del_11q25	0.946	1
22q-Del	Del_11q25	0.946	1
5q-Del	Amp_8p11.21	0.946	1
9q-Del	Amp_1q21.3	0.946	1
9q-Del	Del_12p13.1	0.946	1
Amp_1q23.3	Del_16q23.1	0.946	1
ARID1A	ERBB2	0.947	1
C3orf70	IDH1	0.947	1
ERCC2	Del_4q34.2	0.947	1
FAT1	TMCO4	0.947	1
HLA-A	PARD3	0.947	1
IDH1	METTL3	0.947	1
MBD1	MLL3	0.947	1
MBD1	Del_2q37.1	0.947	1
MBD1	Del_11q23.3	0.947	1
MLL3	TMCO4	0.947	1
MLL3	Del_1q32.1	0.947	1
MLL3	Del_Xq21.33	0.947	1
PARD3	TXNIP	0.947	1
RB1	Amp_6p22.3	0.947	1
SPTAN1	3q-Amp	0.947	1
TMCO4	20q-Amp	0.947	1
UNC93B1	Del_12p13.1	0.947	1
3q-Amp	Del_17p12	0.947	1
7p-Amp	Amp_8p11.21	0.947	1
8q-Amp	Amp_7p11.2	0.947	1
Amp_1q23.3	Amp_6q21	0.947	1
Amp_1q23.3	Del_9p23	0.947	1
Amp_19q13.43	Del_9p23	0.947	1
Del_1q32.1	Del_2q37.1	0.947	1
Del_11q23.3	Del_Xq21.33	0.947	1
ASXL2	Amp_16p13.2	0.948	1
C3orf70	FAT1	0.948	1
CDKN1A	Amp_11q22.2	0.948	1
CDKN2A	MLL	0.948	1
CDKN2A	Del_16q23.1	0.948	1
CNNM4	19q-Amp	0.948	1
CNNM4	Amp_4q13.3	0.948	1
CTNNB1	ZFP36L1	0.948	1
CTNNB1	Amp_22q12.2	0.948	1
EP300	ERCC2	0.948	1
ERBB3	Amp_5p15.33	0.948	1
FAT1	PIK3CA	0.948	1
FOXA1	ZFP36L1	0.948	1
METTL3	Del_11q23.3	0.948	1
MLL	RHOB	0.948	1
NF2	Del_7q36.3	0.948	1
NFE2L2	Del_19p13.3	0.948	1
PKHD1	Amp_17q12	0.948	1
PKHD1	Del_5q12.1	0.948	1
RUNX1	4p-Del	0.948	1
RXRA	Del_19p13.3	0.948	1
SF1	19q-Amp	0.948	1
TP53	14q-Del	0.948	1
TSC1	11p-Del	0.948	1
20q-Amp	Amp_19q13.43	0.948	1
20q-Amp	Del_8p21.3	0.948	1
3p-Amp	Amp_10p14	0.948	1
3q-Amp	Amp_6q21	0.948	1
10q-Del	Amp_6q21	0.948	1
16p-Del	Del_19p13.3	0.948	1
6q-Del	Amp_6q21	0.948	1
Amp_6q21	Del_15q13.1	0.948	1
Amp_7p21.1	Del_8p21.3	0.948	1
Del_8p21.3	Del_11q23.3	0.948	1
BCL2L1	18q-Del	0.949	1
CDKN1A	NF2	0.949	1
EP300	RB1	0.949	1
ERBB3	Del_8p21.3	0.949	1
FBXW7	7q-Amp	0.949	1
FBXW7	Del_Xq21.33	0.949	1
FOXA1	Del_22q13.32	0.949	1
HES1	Amp_3q26.33	0.949	1
MBD1	Amp_1p34.2	0.949	1
MLL2	4p-Del	0.949	1
NF2	TP53	0.949	1
NF2	Del_18q23	0.949	1
PIK3CA	Del_3p14.2	0.949	1
PSIP1	Amp_1p34.2	0.949	1
RPTN	4q-Del	0.949	1
SHANK1	Del_6q27	0.949	1
ZBTB7B	Amp_11q13.3	0.949	1
19q-Amp	18q-Del	0.949	1
7p-Amp	Del_7q36.3	0.949	1
14q-Del	Amp_16p13.2	0.949	1
Amp_1q21.3	Del_2q37.1	0.949	1
Amp_3q26.33	Del_4q22.1	0.949	1
Amp_5p15.33	Amp_20q11.21	0.949	1
Amp_6q21	Del_10q23.31	0.949	1
Del_7q36.3	Del_14q24.1	0.949	1
ARID1A	Amp_4q13.3	0.95	1
CDKN2A	6q-Del	0.95	1
ELF3	20q-Amp	0.95	1
EP300	FOXQ1	0.95	1
EP300	PTEN	0.95	1
ERBB2	Amp_1p34.2	0.95	1
ERBB3	Amp_20q11.21	0.95	1
ERCC2	PARD3	0.95	1
ERCC2	Del_8p21.3	0.95	1
FOXQ1	Amp_1q21.3	0.95	1
GNA13	Amp_8p11.21	0.95	1
KLF5	ZFP36L1	0.95	1
PLCXD3	Amp_22q12.2	0.95	1
RHOB	3q-Amp	0.95	1
TMCO4	Amp_8p11.21	0.95	1
TMCO4	Del_2q22.1	0.95	1
TP53	Amp_1q23.3	0.95	1
ZFP36L1	Del_16p13.3	0.95	1
3p-Amp	Amp_19q13.43	0.95	1
7p-Amp	Amp_22q12.2	0.95	1
7q-Amp	Amp_8p11.23	0.95	1
9p-Del	Del_8p23.3	0.95	1
Amp_7p21.1	Del_2q22.1	0.95	1
ARID1A	TMCO4	0.951	1
ATM	FAM47C	0.951	1
ATM	RAI1	0.951	1
CNOT1	NRAS	0.951	1
ELF3	KIAA1267	0.951	1
EP300	4q-Del	0.951	1
ERBB3	Del_16p13.3	0.951	1
FAM47C	UNC93B1	0.951	1
HLA-A	RBM10	0.951	1
KDM6A	Del_9p21.3	0.951	1
MBD1	Amp_5p15.33	0.951	1
METTL3	PSIP1	0.951	1
METTL3	15q-Del	0.951	1
NF1	ZNF185	0.951	1
NUDT11	RAI1	0.951	1
NUDT11	RBM10	0.951	1
PLCXD3	8q-Amp	0.951	1
PLCXD3	Del_18q23	0.951	1
RAI1	UNC93B1	0.951	1
STAG2	9p-Del	0.951	1
TMCO4	Amp_5p15.33	0.951	1
TP53	Amp_13q22.1	0.951	1
TP53	Del_10q23.31	0.951	1
3p-Amp	15q-Del	0.951	1
8q-Amp	Del_17p12	0.951	1
4q-Del	Del_9p21.3	0.951	1
Amp_1q21.3	Amp_17q12	0.951	1
Amp_8p11.23	Del_11p15.5	0.951	1
Amp_13q22.1	Del_14q24.1	0.951	1
Amp_17q12	Del_13q14.2	0.951	1
Del_6p25.3	Del_11p15.5	0.951	1
Del_14q24.1	Del_16q23.1	0.951	1
ARID1A	RAI1	0.952	1
BCL2L1	ERCC2	0.952	1
CSMD3	NF1	0.952	1
ERBB3	FOXA1	0.952	1
ERCC2	Amp_7p11.2	0.952	1
FGFR3	19q-Amp	0.952	1
GNA13	TMCO4	0.952	1
GNA13	Del_Xq21.33	0.952	1
HES1	PKHD1	0.952	1
KDM6A	TP53	0.952	1
MBD1	TMCO4	0.952	1
NF1	Amp_4p16.3	0.952	1
NF1	Amp_17q23.3	0.952	1
NF1	Del_3p14.2	0.952	1
NUDT11	Del_9p23	0.952	1
RBM10	14q-Del	0.952	1
RHOB	9q-Del	0.952	1
RHOB	Amp_3p25.2	0.952	1
RPTN	Amp_8p11.23	0.952	1
TMCO4	Del_Xq21.33	0.952	1
TSC1	ZFP36L1	0.952	1
17q-Amp	Del_1q32.1	0.952	1
17q-Amp	Del_Xq21.33	0.952	1
19q-Amp	Amp_8p11.23	0.952	1
20p-Amp	Amp_7p21.1	0.952	1
3p-Amp	Amp_8p11.21	0.952	1
17p-Del	Del_13q14.2	0.952	1
4q-Del	Del_9p23	0.952	1
Amp_4q13.3	Amp_8p11.23	0.952	1
Amp_5p15.33	Del_2q34	0.952	1
Amp_6q21	Amp_16p13.2	0.952	1
Del_2q22.1	Del_17p12	0.952	1
Del_5q12.1	Del_11q23.3	0.952	1
Del_9p23	Del_Xp11.3	0.952	1
ATM	MLL	0.953	1
CTNNB1	RXRA	0.953	1
CTNNB1	16p-Del	0.953	1
ERBB2	TMCO4	0.953	1
ERCC2	IDH1	0.953	1
ERCC2	8q-Amp	0.953	1
ERCC2	Amp_4q13.3	0.953	1
FAT1	UNC93B1	0.953	1
FOXA1	KIAA1267	0.953	1
FOXA1	NFE2L2	0.953	1
FOXQ1	RXRA	0.953	1
HES1	RUNX1	0.953	1
KIAA1267	THRAP3	0.953	1
KIAA1267	1q-Amp	0.953	1
MLL3	ZNF185	0.953	1
PTEN	22q-Del	0.953	1
PTEN	Amp_6p22.3	0.953	1
RHOA	SCARF2	0.953	1
RUNX1	Amp_6q21	0.953	1
RXRA	THRAP3	0.953	1
SCARF2	Del_16q23.1	0.953	1
SHANK1	19p-Del	0.953	1
SHANK1	Del_3p14.2	0.953	1
TMCO4	Amp_19q12	0.953	1
TSC1	Del_18q23	0.953	1
ZBTB7B	Del_Xp11.3	0.953	1
1q-Amp	Amp_11q22.2	0.953	1
3p-Amp	Amp_8q22.3	0.953	1
3q-Amp	Amp_1q21.3	0.953	1
3q-Amp	Del_16q23.1	0.953	1
8q-Amp	Del_5q12.1	0.953	1
22q-Del	Del_1p36.11	0.953	1
Amp_3p25.2	Amp_19q13.43	0.953	1
Amp_6q21	Del_Xp11.3	0.953	1
Amp_10p14	Del_17p12	0.953	1
Amp_13q22.1	Del_15q13.1	0.953	1
Del_1p36.11	Del_18q23	0.953	1
Del_4q34.2	Del_6p25.3	0.953	1
ARID1A	16p-Del	0.954	1
DNAH6	Amp_1q23.3	0.954	1
FBXW7	ZNF185	0.954	1
KDM6A	PTEN	0.954	1
KDM6A	THRAP3	0.954	1
MLL2	RUNX1	0.954	1
PIK3CA	Del_2q37.1	0.954	1
PKHD1	5q-Del	0.954	1
PLCXD3	16p-Del	0.954	1
RBM10	18q-Del	0.954	1
RXRA	Amp_5p15.33	0.954	1
SPTAN1	Del_Xp11.3	0.954	1
ZNF185	Amp_1p34.2	0.954	1
8q-Amp	Del_11p15.5	0.954	1
11p-Del	Del_4q34.2	0.954	1
16p-Del	Amp_19q13.43	0.954	1
8p-Del	Del_2q22.1	0.954	1
Amp_11q22.2	Amp_19q13.43	0.954	1
Amp_11q22.2	Del_8p23.3	0.954	1
CDKN1A	TXNIP	0.955	1
CDKN1A	Del_5q12.1	0.955	1
CNNM4	CTNNB1	0.955	1
CNNM4	FOXQ1	0.955	1
CNNM4	PIK3CA	0.955	1
CNNM4	PTEN	0.955	1
CSMD3	ELF3	0.955	1
CTNNB1	SF1	0.955	1
CUL1	TSC1	0.955	1
ERBB3	5p-Amp	0.955	1
FAM47C	MLL2	0.955	1
FBXW7	Del_6q27	0.955	1
HES1	Amp_3p25.2	0.955	1
HLA-A	15q-Del	0.955	1
KDM6A	11q-Del	0.955	1
MBD1	RB1	0.955	1
NF1	14q-Del	0.955	1
NF2	THRAP3	0.955	1
NFE2L2	9p-Del	0.955	1
NRAS	15q-Del	0.955	1
NRAS	Amp_8p11.21	0.955	1
NUDT11	15q-Del	0.955	1
PSIP1	UNC93B1	0.955	1
PTEN	SF1	0.955	1
SF1	1q-Amp	0.955	1
19q-Amp	Del_9p21.3	0.955	1
22q-Del	9p-Del	0.955	1
4q-Del	Del_2q37.1	0.955	1
Amp_4q13.3	Del_12p13.1	0.955	1
Amp_8p11.23	Del_19p13.3	0.955	1
Amp_10p14	Del_4q34.2	0.955	1
Del_16p13.3	Del_19p13.3	0.955	1
ARID1B	RXRA	0.956	1
ASXL2	BCL2L1	0.956	1
BCL2L1	Amp_17q12	0.956	1
BCL2L1	Del_17p12	0.956	1
ELF3	Amp_8p11.21	0.956	1
ERBB2	Amp_7p21.1	0.956	1
KDM6A	17p-Del	0.956	1
KLF5	NFE2L2	0.956	1
MBD1	Del_6q27	0.956	1
MLL3	Amp_4p16.3	0.956	1
NF1	ZBTB7B	0.956	1
NFE2L2	4q-Del	0.956	1
ZFP36L1	Del_6p25.3	0.956	1
20q-Amp	18q-Del	0.956	1
7p-Amp	Amp_11q22.2	0.956	1
11q-Del	4q-Del	0.956	1
22q-Del	4q-Del	0.956	1
4q-Del	Del_6q27	0.956	1
4q-Del	Del_19p13.3	0.956	1
Amp_3q26.33	Del_9p21.3	0.956	1
Amp_4p16.3	Del_2q37.1	0.956	1
Amp_5p15.33	Del_10q23.31	0.956	1
Amp_7p21.1	Del_Xq21.33	0.956	1
Amp_8p11.21	Amp_17q23.3	0.956	1
Amp_8p11.21	Del_3p14.2	0.956	1
Amp_13q22.1	Amp_22q12.2	0.956	1
Amp_19q12	Del_6q27	0.956	1
Del_1q32.1	Del_11q25	0.956	1
Del_11q25	Del_Xq21.33	0.956	1
ARID1A	Del_6q27	0.957	1
ARID1B	PLCXD3	0.957	1
ASXL2	Amp_1q23.3	0.957	1
CREBBP	MLL2	0.957	1
CSMD3	5p-Amp	0.957	1
METTL3	SCARF2	0.957	1
MLL	RUNX1	0.957	1
PLCXD3	4q-Del	0.957	1
PSIP1	Amp_11q13.3	0.957	1
RHOA	SHANK1	0.957	1
RHOA	Amp_3p25.2	0.957	1
RUNX1	Amp_22q12.2	0.957	1
RUNX1	Del_16q23.1	0.957	1
SHANK1	Amp_3p25.2	0.957	1
20p-Amp	18q-Del	0.957	1
3p-Amp	Amp_4p16.3	0.957	1
3q-Amp	Amp_6p22.3	0.957	1
5p-Amp	Del_16p13.3	0.957	1
8q-Amp	Amp_19q12	0.957	1
10q-Del	Amp_6p22.3	0.957	1
19p-Del	Del_2q37.1	0.957	1
Amp_1p34.2	Amp_4p16.3	0.957	1
Amp_1q23.3	Amp_17q12	0.957	1
Amp_1q23.3	Del_13q14.2	0.957	1
Amp_6p22.3	Del_16p13.3	0.957	1
Amp_12q15	Del_Xp11.3	0.957	1
Amp_22q12.2	Del_Xp11.3	0.957	1
Del_6p25.3	Del_Xp11.3	0.957	1
Del_7q36.3	Del_17p12	0.957	1
Del_11p15.5	Del_12p13.1	0.957	1
CTNNB1	KLF5	0.958	1
DNAH6	PSIP1	0.958	1
ELF3	20p-Amp	0.958	1
ERBB2	UNC93B1	0.958	1
ERCC2	MLL	0.958	1
ERCC2	Amp_12q15	0.958	1
FOXA1	KLF5	0.958	1
FOXA1	7p-Amp	0.958	1
GNA13	4p-Del	0.958	1
IDH1	RPTN	0.958	1
KIAA1267	Amp_1q21.3	0.958	1
MBD1	4p-Del	0.958	1
RBM10	Del_2q34	0.958	1
RHOA	Del_18q23	0.958	1
RPTN	Del_2q37.1	0.958	1
RPTN	Del_10q23.31	0.958	1
RUNX1	TP53	0.958	1
THRAP3	7p-Amp	0.958	1
TMCO4	4p-Del	0.958	1
5p-Amp	Del_Xp11.3	0.958	1
Amp_3q26.33	Amp_22q12.2	0.958	1
Amp_4q13.3	Del_10q23.31	0.958	1
Amp_8q22.3	Amp_17q23.3	0.958	1
Del_7q36.3	Del_10q23.31	0.958	1
ARID1A	PIK3CA	0.959	1
ASXL2	IDH1	0.959	1
ASXL2	Del_12p13.1	0.959	1
C3orf70	10q-Del	0.959	1
CNNM4	Amp_8p11.23	0.959	1
CREBBP	CUL1	0.959	1
CUL1	3q-Amp	0.959	1
CUL1	10q-Del	0.959	1
ELF3	MBD1	0.959	1
ERBB3	RB1	0.959	1
ERBB3	SCARF2	0.959	1
HES1	MBD1	0.959	1
HES1	Del_Xq21.33	0.959	1
KDM6A	ZBTB7B	0.959	1
METTL3	6q-Del	0.959	1
METTL3	Amp_6p22.3	0.959	1
METTL3	Del_6q27	0.959	1
MLL2	SHANK1	0.959	1
NF2	STAG2	0.959	1
SF1	STAG2	0.959	1
ZBTB7B	Del_Xq21.33	0.959	1
17q-Amp	Amp_6q21	0.959	1
17q-Amp	Del_3p14.2	0.959	1
3p-Amp	Amp_7p21.1	0.959	1
3p-Amp	Del_11q25	0.959	1
11p-Del	Del_8p21.3	0.959	1
19p-Del	Amp_1q23.3	0.959	1
9q-Del	Del_10q23.31	0.959	1
Amp_1q21.3	Del_6p25.3	0.959	1
Amp_1q21.3	Del_11q25	0.959	1
Amp_3q26.33	Del_4q34.2	0.959	1
Amp_3q26.33	Del_5q12.1	0.959	1
Amp_4p16.3	Del_22q13.32	0.959	1
Amp_16p13.2	Amp_19q13.43	0.959	1
Amp_17q23.3	Del_1q32.1	0.959	1
Amp_17q23.3	Del_Xq21.33	0.959	1
Del_3p14.2	Del_Xq21.33	0.959	1
Del_13q14.2	Del_19p13.3	0.959	1
CSMD3	KIAA1267	0.96	1
FAT1	HRAS	0.96	1
FGFR3	Amp_4p16.3	0.96	1
HLA-A	Amp_4p16.3	0.96	1
HRAS	20q-Amp	0.96	1
NF1	SHANK1	0.96	1
NF1	TP53	0.96	1
NF2	10q-Del	0.96	1
PLCXD3	Amp_8p11.23	0.96	1
PLCXD3	Del_16p13.3	0.96	1
RXRA	STAG2	0.96	1
SHANK1	SPTAN1	0.96	1
SPTAN1	22q-Del	0.96	1
TXNIP	Del_11q23.3	0.96	1
16p-Del	Amp_1q23.3	0.96	1
4p-Del	Del_14q24.1	0.96	1
Amp_1q21.3	Amp_20q11.21	0.96	1
Amp_16p13.2	Del_16q23.1	0.96	1
Amp_20q11.21	Del_15q13.1	0.96	1
Del_1p36.11	Del_14q24.1	0.96	1
Del_8p21.3	Del_13q14.2	0.96	1
Del_10q23.31	Del_11q25	0.96	1
Del_22q13.32	Del_Xp11.3	0.96	1
ATM	PSIP1	0.961	1
ATM	Del_7q36.3	0.961	1
CNNM4	KRAS	0.961	1
CNNM4	Del_Xp11.3	0.961	1
ELF3	5q-Del	0.961	1
KRAS	SF1	0.961	1
PIK3CA	TXNIP	0.961	1
PLCXD3	Del_12p13.1	0.961	1
PSIP1	Del_4q34.2	0.961	1
RPTN	Del_4q34.2	0.961	1
SF1	Del_8p21.3	0.961	1
7q-Amp	Del_4q34.2	0.961	1
Amp_1p34.2	Del_16p13.3	0.961	1
Amp_4q13.3	Amp_17q12	0.961	1
Amp_4q13.3	Del_4q34.2	0.961	1
Amp_7p21.1	Del_6q27	0.961	1
Amp_8q22.3	Amp_13q22.1	0.961	1
Amp_17q23.3	Del_19p13.3	0.961	1
Amp_20q11.21	Del_2q37.1	0.961	1
CDKN2A	GNA13	0.962	1
CDKN2A	MBD1	0.962	1
CDKN2A	Del_1q32.1	0.962	1
CSMD3	Amp_19q13.43	0.962	1
CTNNB1	Amp_3p25.2	0.962	1
FOXA1	Amp_3p25.2	0.962	1
KIAA1267	KRAS	0.962	1
KIAA1267	PARD3	0.962	1
MBD1	Amp_10p14	0.962	1
MLL3	Amp_1q23.3	0.962	1
NF1	SPTAN1	0.962	1
NRAS	Amp_17q23.3	0.962	1
PSIP1	Del_14q24.1	0.962	1
RUNX1	16p-Del	0.962	1
RXRA	Del_12p13.1	0.962	1
7q-Amp	Del_14q24.1	0.962	1
14q-Del	Amp_8p11.21	0.962	1
14q-Del	Del_2q22.1	0.962	1
Amp_5p15.33	Amp_13q22.1	0.962	1
Amp_5p15.33	Del_6p25.3	0.962	1
Amp_8p11.23	Amp_19q13.43	0.962	1
Amp_10p14	Del_1q32.1	0.962	1
Amp_11q22.2	Del_12p13.1	0.962	1
Amp_16p13.2	Amp_22q12.2	0.962	1
Amp_22q12.2	Del_5q12.1	0.962	1
C3orf70	SHANK1	0.963	1
CDKN1A	Del_12p13.1	0.963	1
CDKN2A	ZNF185	0.963	1
CSMD3	Amp_8p11.23	0.963	1
CTNNB1	ERCC2	0.963	1
FOXQ1	PARD3	0.963	1
HLA-A	SHANK1	0.963	1
IDH1	THRAP3	0.963	1
KDM6A	Amp_3p25.2	0.963	1
KIAA1267	Amp_8q22.3	0.963	1
METTL3	SHANK1	0.963	1
MLL	Amp_6p22.3	0.963	1
MLL	Amp_7p11.2	0.963	1
NF2	Amp_16p13.2	0.963	1
SHANK1	UNC93B1	0.963	1
1q-Amp	Del_12p13.1	0.963	1
20q-Amp	6q-Del	0.963	1
20q-Amp	Amp_7p11.2	0.963	1
3p-Amp	Amp_17q23.3	0.963	1
15q-Del	Amp_1q21.3	0.963	1
Amp_3p25.2	Amp_20q11.21	0.963	1
Amp_7p11.2	Amp_13q22.1	0.963	1
Amp_19q13.43	Del_6q27	0.963	1
Amp_19q13.43	Del_11q25	0.963	1
CDKN1A	Amp_11q13.3	0.964	1
CDKN2A	7q-Amp	0.964	1
FGFR3	1q-Amp	0.964	1
FOXA1	STAG2	0.964	1
HES1	MLL3	0.964	1
HES1	Del_2q37.1	0.964	1
KDM6A	Del_12p13.1	0.964	1
KIAA1267	Del_16q23.1	0.964	1
MLL2	NF2	0.964	1
MLL3	Amp_6q21	0.964	1
NFE2L2	3q-Amp	0.964	1
NRAS	Amp_6p22.3	0.964	1
PKHD1	Del_8p21.3	0.964	1
RBM10	5p-Amp	0.964	1
RHOB	7q-Amp	0.964	1
SCARF2	18q-Del	0.964	1
20q-Amp	Del_11q23.3	0.964	1
3q-Amp	6q-Del	0.964	1
8q-Amp	Del_12p13.1	0.964	1
Amp_8p11.21	Del_13q14.2	0.964	1
Amp_13q22.1	Del_2q37.1	0.964	1
Amp_16p13.2	Del_8p21.3	0.964	1
Del_6q27	Del_9p23	0.964	1
Del_7q36.3	Del_19p13.3	0.964	1
Del_9p23	Del_12p13.1	0.964	1
Del_10q23.31	Del_19p13.3	0.964	1
Del_11q25	Del_12p13.1	0.964	1
ARID1A	C3orf70	0.965	1
ARID1B	TSC1	0.965	1
BCL2L1	Del_15q13.1	0.965	1
CUL1	Amp_5p15.33	0.965	1
ELF3	17p-Del	0.965	1
ELF3	Amp_11q13.3	0.965	1
EP300	PKHD1	0.965	1
ERBB2	TSC1	0.965	1
FAM47C	Amp_8p11.21	0.965	1
GNA13	8p-Del	0.965	1
MBD1	8p-Del	0.965	1
NF1	Del_4q34.2	0.965	1
PLCXD3	Del_4q34.2	0.965	1
PSIP1	Amp_4q13.3	0.965	1
RAI1	Del_2q22.1	0.965	1
RHOB	Del_8p23.3	0.965	1
SPTAN1	TMCO4	0.965	1
ZFP36L1	ZNF185	0.965	1
ZFP36L1	Del_13q14.2	0.965	1
19q-Amp	15q-Del	0.965	1
11p-Del	Amp_17q23.3	0.965	1
14q-Del	Amp_1q21.3	0.965	1
15q-Del	Amp_4q13.3	0.965	1
17p-Del	Amp_17q23.3	0.965	1
Amp_3q26.33	Del_11p15.5	0.965	1
Amp_5p15.33	Amp_10p14	0.965	1
Amp_6p22.3	Amp_20q11.21	0.965	1
Amp_17q23.3	Del_10q23.31	0.965	1
Del_3p14.2	Del_10q23.31	0.965	1
Del_4q22.1	Del_19p13.3	0.965	1
Del_13q14.2	Del_14q24.1	0.965	1
ARID1A	ARID1B	0.966	1
ARID1A	CTNNB1	0.966	1
ARID1A	FOXA1	0.966	1
ARID1B	Del_Xp11.3	0.966	1
ASXL2	RAI1	0.966	1
ATM	CNNM4	0.966	1
CNNM4	MBD1	0.966	1
DNAH6	ERBB2	0.966	1
ERBB2	TXNIP	0.966	1
ERBB2	14q-Del	0.966	1
ERCC2	7q-Amp	0.966	1
FBXW7	11q-Del	0.966	1
GNA13	Amp_22q12.2	0.966	1
HES1	ZBTB7B	0.966	1
KLF5	KRAS	0.966	1
MBD1	Amp_22q12.2	0.966	1
METTL3	11p-Del	0.966	1
NF1	SF1	0.966	1
NF1	Del_16q23.1	0.966	1
NFE2L2	Del_10q23.31	0.966	1
NUDT11	SPTAN1	0.966	1
PIK3CA	SPTAN1	0.966	1
PTEN	Amp_5p15.33	0.966	1
RUNX1	8q-Amp	0.966	1
SCARF2	Del_7q36.3	0.966	1
SF1	Del_8p23.3	0.966	1
SPTAN1	UNC93B1	0.966	1
TP53	TXNIP	0.966	1
ZBTB7B	Amp_6q21	0.966	1
ZFP36L1	17q-Amp	0.966	1
ZFP36L1	Del_1q32.1	0.966	1
1q-Amp	Del_4q22.1	0.966	1
7p-Amp	Amp_5p15.33	0.966	1
7q-Amp	Amp_6p22.3	0.966	1
8q-Amp	Del_Xp11.3	0.966	1
19p-Del	Del_7q36.3	0.966	1
Amp_1q21.3	Amp_17q23.3	0.966	1
Amp_6q21	Amp_19q12	0.966	1
Amp_16p13.2	Del_2q34	0.966	1
Amp_22q12.2	Del_Xq21.33	0.966	1
Del_4q22.1	Del_11p15.5	0.966	1
Del_18q23	Del_Xp11.3	0.966	1
BCL2L1	PKHD1	0.967	1
BCL2L1	Amp_16p13.2	0.967	1
C3orf70	NF1	0.967	1
C3orf70	NUDT11	0.967	1
C3orf70	UNC93B1	0.967	1
CNOT1	THRAP3	0.967	1
CUL1	NRAS	0.967	1
DNAH6	6q-Del	0.967	1
ERCC2	Amp_1q23.3	0.967	1
FAM47C	FOXQ1	0.967	1
FAM47C	THRAP3	0.967	1
FAM47C	TP53	0.967	1
GNA13	Del_5q12.1	0.967	1
PLCXD3	PSIP1	0.967	1
PTEN	RBM10	0.967	1
SPTAN1	Amp_8p11.23	0.967	1
TXNIP	3q-Amp	0.967	1
UNC93B1	3p-Amp	0.967	1
ZNF185	Del_13q14.2	0.967	1
3q-Amp	Del_9p23	0.967	1
11p-Del	Del_16p13.3	0.967	1
14q-Del	Amp_6q21	0.967	1
15q-Del	Del_2q34	0.967	1
18q-Del	Amp_20q11.21	0.967	1
4q-Del	Del_12p13.1	0.967	1
6q-Del	Amp_8p11.21	0.967	1
6q-Del	Del_9p23	0.967	1
8p-Del	Del_11q25	0.967	1
9q-Del	Del_Xq21.33	0.967	1
Amp_1q21.3	Del_22q13.32	0.967	1
Amp_3q26.33	Del_8p21.3	0.967	1
Amp_3q26.33	Del_9p23	0.967	1
Amp_12q15	Amp_20q11.21	0.967	1
Amp_17q23.3	Del_12p13.1	0.967	1
Del_2q37.1	Del_11q25	0.967	1
Del_5q12.1	Del_Xq21.33	0.967	1
ARID1A	Del_16p13.3	0.968	1
C3orf70	METTL3	0.968	1
C3orf70	Del_18q23	0.968	1
CNOT1	KIAA1267	0.968	1
FAM47C	NFE2L2	0.968	1
GNA13	Amp_12q15	0.968	1
GNA13	Del_6p25.3	0.968	1
HLA-A	MLL	0.968	1
MLL	UNC93B1	0.968	1
MLL	Amp_13q22.1	0.968	1
RBM10	16p-Del	0.968	1
RBM10	Del_11p15.5	0.968	1
STAG2	4q-Del	0.968	1
TMCO4	Del_16q23.1	0.968	1
20p-Amp	8p-Del	0.968	1
20q-Amp	Del_6p25.3	0.968	1
3p-Amp	8q-Amp	0.968	1
3p-Amp	Del_18q23	0.968	1
7q-Amp	Del_5q12.1	0.968	1
10q-Del	Amp_1q23.3	0.968	1
19p-Del	Amp_10p14	0.968	1
4q-Del	Del_16p13.3	0.968	1
Amp_5p15.33	Amp_8p11.21	0.968	1
Amp_6q21	Amp_7p21.1	0.968	1
Amp_13q22.1	Del_6p25.3	0.968	1
Amp_19q13.43	Del_7q36.3	0.968	1
Amp_22q12.2	Del_9p23	0.968	1
Del_1q32.1	Del_16q23.1	0.968	1
Del_4q22.1	Del_22q13.32	0.968	1
Del_6p25.3	Del_Xq21.33	0.968	1
Del_16q23.1	Del_Xq21.33	0.968	1
ARID1A	Amp_1p34.2	0.969	1
BCL2L1	NF1	0.969	1
BCL2L1	Del_9p21.3	0.969	1
CNNM4	Amp_1q23.3	0.969	1
CSMD3	Amp_8q22.3	0.969	1
DNAH6	Amp_1q21.3	0.969	1
FBXW7	NF2	0.969	1
FGFR3	TSC1	0.969	1
GNA13	Del_13q14.2	0.969	1
KDM6A	Amp_13q22.1	0.969	1
KIAA1267	TMCO4	0.969	1
KIAA1267	Del_1q32.1	0.969	1
MBD1	16p-Del	0.969	1
MBD1	Del_8p21.3	0.969	1
MBD1	Del_13q14.2	0.969	1
MLL2	7q-Amp	0.969	1
PKHD1	20q-Amp	0.969	1
PLCXD3	Del_2q34	0.969	1
PTEN	Del_10q23.31	0.969	1
RHOA	TXNIP	0.969	1
RHOB	Amp_8p11.21	0.969	1
SF1	Amp_1p34.2	0.969	1
SPTAN1	3p-Amp	0.969	1
THRAP3	Del_10q23.31	0.969	1
TMCO4	Del_9p23	0.969	1
TMCO4	Del_13q14.2	0.969	1
17q-Amp	16p-Del	0.969	1
1q-Amp	Amp_11q13.3	0.969	1
20q-Amp	Amp_16p13.2	0.969	1
20q-Amp	Del_9p23	0.969	1
3p-Amp	Amp_7p11.2	0.969	1
14q-Del	Amp_7p21.1	0.969	1
14q-Del	Del_11q25	0.969	1
22q-Del	Del_1q32.1	0.969	1
22q-Del	Del_Xq21.33	0.969	1
Amp_3q26.33	Del_1p36.11	0.969	1
Amp_17q12	Del_16q23.1	0.969	1
Amp_17q23.3	Del_18q23	0.969	1
Del_1q32.1	Del_9p23	0.969	1
Del_13q14.2	Del_Xq21.33	0.969	1
ELF3	ZBTB7B	0.97	1
ELF3	Del_4q34.2	0.97	1
ERCC2	RHOB	0.97	1
FAT1	PSIP1	0.97	1
KLF5	MLL	0.97	1
KLF5	ZNF185	0.97	1
PSIP1	Del_9p21.3	0.97	1
RB1	Amp_10p14	0.97	1
RB1	Del_19p13.3	0.97	1
RUNX1	Del_12p13.1	0.97	1
SPTAN1	5q-Del	0.97	1
TP53	Amp_8p11.21	0.97	1
ZNF185	7p-Amp	0.97	1
19q-Amp	Amp_4p16.3	0.97	1
19q-Amp	Del_9p23	0.97	1
7p-Amp	Del_6p25.3	0.97	1
10q-Del	Amp_10p14	0.97	1
16p-Del	Del_4q34.2	0.97	1
22q-Del	9q-Del	0.97	1
22q-Del	Del_4q34.2	0.97	1
4q-Del	Amp_13q22.1	0.97	1
4q-Del	Del_16q23.1	0.97	1
9p-Del	Del_19p13.3	0.97	1
Amp_1p34.2	Amp_19q13.43	0.97	1
Amp_1q23.3	Del_7q36.3	0.97	1
Amp_4p16.3	Del_7q36.3	0.97	1
Amp_5p15.33	Del_22q13.32	0.97	1
Amp_6p22.3	Del_22q13.32	0.97	1
Amp_7p21.1	Del_14q24.1	0.97	1
Amp_11q13.3	Amp_19q13.43	0.97	1
Del_2q34	Del_18q23	0.97	1
Del_9p21.3	Del_12p13.1	0.97	1
Del_11q25	Del_14q24.1	0.97	1
ASXL2	19p-Del	0.971	1
ATM	FBXW7	0.971	1
ATM	THRAP3	0.971	1
ATM	1q-Amp	0.971	1
BCL2L1	FBXW7	0.971	1
C3orf70	MLL	0.971	1
C3orf70	Del_11p15.5	0.971	1
CNNM4	ZBTB7B	0.971	1
CNNM4	Amp_3p25.2	0.971	1
CNNM4	Amp_6q21	0.971	1
CNOT1	CREBBP	0.971	1
CNOT1	Del_6q27	0.971	1
CTNNB1	SCARF2	0.971	1
CUL1	Amp_1p34.2	0.971	1
CUL1	Del_16q23.1	0.971	1
DNAH6	NRAS	0.971	1
DNAH6	5p-Amp	0.971	1
ERBB2	ERCC2	0.971	1
ERBB3	22q-Del	0.971	1
FGFR3	Del_18q23	0.971	1
FOXA1	7q-Amp	0.971	1
FOXQ1	19p-Del	0.971	1
HES1	NF2	0.971	1
HES1	SF1	0.971	1
IDH1	Amp_8q22.3	0.971	1
METTL3	Del_11p15.5	0.971	1
MLL3	1q-Amp	0.971	1
NF2	Amp_6q21	0.971	1
NRAS	TXNIP	0.971	1
PSIP1	THRAP3	0.971	1
PSIP1	1q-Amp	0.971	1
PTEN	SCARF2	0.971	1
PTEN	Del_2q37.1	0.971	1
RAI1	Del_6q27	0.971	1
RBM10	Del_6q27	0.971	1
SCARF2	THRAP3	0.971	1
THRAP3	7q-Amp	0.971	1
THRAP3	15q-Del	0.971	1
THRAP3	Del_2q37.1	0.971	1
TXNIP	UNC93B1	0.971	1
TXNIP	Del_3p14.2	0.971	1
ZFP36L1	Amp_1p34.2	0.971	1
3p-Amp	Amp_13q22.1	0.971	1
3p-Amp	Del_16q23.1	0.971	1
8q-Amp	Amp_10p14	0.971	1
11p-Del	Del_8p23.3	0.971	1
8p-Del	Amp_8p11.23	0.971	1
Del_16p13.3	Del_18q23	0.971	1
ARID1B	CNOT1	0.972	1
ARID1B	Amp_1q23.3	0.972	1
CNOT1	KLF5	0.972	1
CNOT1	Del_18q23	0.972	1
CSMD3	Amp_13q22.1	0.972	1
ERBB3	TMCO4	0.972	1
ERBB3	UNC93B1	0.972	1
ERCC2	Amp_4p16.3	0.972	1
FAM47C	7p-Amp	0.972	1
FOXA1	11q-Del	0.972	1
FOXA1	Del_19p13.3	0.972	1
FOXQ1	Del_17p12	0.972	1
MLL	Amp_1p34.2	0.972	1
MLL2	Del_Xq21.33	0.972	1
PLCXD3	Amp_8p11.21	0.972	1
PLCXD3	Del_2q22.1	0.972	1
TP53	Amp_1q21.3	0.972	1
20p-Amp	Del_5q12.1	0.972	1
20p-Amp	Del_6p25.3	0.972	1
10q-Del	Del_11p15.5	0.972	1
14q-Del	Amp_17q23.3	0.972	1
18q-Del	Del_14q24.1	0.972	1
6q-Del	Del_11p15.5	0.972	1
8p-Del	Del_3p14.2	0.972	1
Amp_1q21.3	Amp_8p11.21	0.972	1
Amp_1q21.3	Del_4q34.2	0.972	1
Amp_1q23.3	Del_5q12.1	0.972	1
Amp_8p11.21	Del_4q22.1	0.972	1
Amp_8q22.3	Amp_16p13.2	0.972	1
Amp_10p14	Del_8p23.3	0.972	1
Amp_13q22.1	Del_22q13.32	0.972	1
Del_1p36.11	Del_17p12	0.972	1
Del_2q22.1	Del_4q22.1	0.972	1
ARID1B	TMCO4	0.973	1
ARID1B	Amp_3q26.33	0.973	1
ARID1B	Amp_16p13.2	0.973	1
C3orf70	MLL2	0.973	1
C3orf70	TXNIP	0.973	1
CSMD3	IDH1	0.973	1
DNAH6	METTL3	0.973	1
ELF3	TSC1	0.973	1
ERBB3	SPTAN1	0.973	1
FAM47C	Del_Xp11.3	0.973	1
HES1	ZFP36L1	0.973	1
IDH1	MBD1	0.973	1
IDH1	STAG2	0.973	1
IDH1	TMCO4	0.973	1
IDH1	Amp_16p13.2	0.973	1
IDH1	Del_1q32.1	0.973	1
IDH1	Del_Xq21.33	0.973	1
KIAA1267	PSIP1	0.973	1
KLF5	MBD1	0.973	1
KLF5	17q-Amp	0.973	1
KLF5	Del_Xq21.33	0.973	1
MLL2	Del_10q23.31	0.973	1
NF1	TXNIP	0.973	1
PARD3	ZNF185	0.973	1
PIK3CA	RPTN	0.973	1
PLCXD3	RHOA	0.973	1
PSIP1	5p-Amp	0.973	1
RB1	Del_8p23.3	0.973	1
RXRA	15q-Del	0.973	1
TMCO4	4q-Del	0.973	1
TSC1	Amp_17q23.3	0.973	1
5p-Amp	7q-Amp	0.973	1
7p-Amp	Amp_16p13.2	0.973	1
7p-Amp	Del_10q23.31	0.973	1
7p-Amp	Del_Xq21.33	0.973	1
7q-Amp	Amp_11q22.2	0.973	1
15q-Del	Del_2q22.1	0.973	1
19p-Del	Del_13q14.2	0.973	1
Amp_5p15.33	Del_19p13.3	0.973	1
Amp_6q21	Amp_22q12.2	0.973	1
Amp_11q13.3	Del_16p13.3	0.973	1
Del_2q34	Del_11q25	0.973	1
Del_13q14.2	Del_17p12	0.973	1
CDKN1A	5q-Del	0.974	1
CREBBP	ERCC2	0.974	1
CSMD3	RUNX1	0.974	1
CUL1	Del_22q13.32	0.974	1
EP300	Del_Xq21.33	0.974	1
ERBB3	NF1	0.974	1
GNA13	Del_8p23.3	0.974	1
HLA-A	RPTN	0.974	1
KDM6A	RXRA	0.974	1
MLL3	RAI1	0.974	1
NF1	Del_15q13.1	0.974	1
NRAS	19q-Amp	0.974	1
NUDT11	19q-Amp	0.974	1
PIK3CA	18q-Del	0.974	1
PKHD1	Amp_16p13.2	0.974	1
RPTN	Del_15q13.1	0.974	1
SPTAN1	Del_11p15.5	0.974	1
TP53	16p-Del	0.974	1
TSC1	Amp_1p34.2	0.974	1
10q-Del	Amp_8p11.23	0.974	1
15q-Del	Amp_1q23.3	0.974	1
22q-Del	Del_11p15.5	0.974	1
4q-Del	Del_22q13.32	0.974	1
5q-Del	Del_16q23.1	0.974	1
Amp_3q26.33	Del_11q23.3	0.974	1
Amp_4q13.3	Amp_19q12	0.974	1
Amp_4q13.3	Del_15q13.1	0.974	1
Amp_7p21.1	Del_13q14.2	0.974	1
Amp_8q22.3	Del_6q27	0.974	1
Amp_17q23.3	Del_14q24.1	0.974	1
Amp_19q12	Del_7q36.3	0.974	1
Del_6p25.3	Del_19p13.3	0.974	1
Del_10q23.31	Del_11q23.3	0.974	1
BCL2L1	4p-Del	0.975	1
BCL2L1	Amp_3p25.2	0.975	1
CDKN1A	PSIP1	0.975	1
CDKN2A	SHANK1	0.975	1
CNOT1	ZNF185	0.975	1
CTNNB1	Amp_19q13.43	0.975	1
ELF3	Del_17p12	0.975	1
ERCC2	ZFP36L1	0.975	1
ERCC2	6q-Del	0.975	1
FAM47C	ZNF185	0.975	1
FBXW7	Del_22q13.32	0.975	1
IDH1	NF1	0.975	1
KRAS	19p-Del	0.975	1
MLL	Amp_1q23.3	0.975	1
MLL2	ZNF185	0.975	1
PARD3	6q-Del	0.975	1
PSIP1	11q-Del	0.975	1
PSIP1	5q-Del	0.975	1
RB1	8p-Del	0.975	1
RXRA	Del_2q34	0.975	1
TP53	Del_8p21.3	0.975	1
ZBTB7B	Amp_7p11.2	0.975	1
1q-Amp	Amp_4p16.3	0.975	1
5p-Amp	Amp_11q22.2	0.975	1
10q-Del	Del_12p13.1	0.975	1
17p-Del	Del_2q22.1	0.975	1
8p-Del	9p-Del	0.975	1
8p-Del	Amp_20q11.21	0.975	1
8p-Del	Del_18q23	0.975	1
9q-Del	Del_2q34	0.975	1
Amp_1q23.3	Amp_12q15	0.975	1
Amp_1q23.3	Del_3p14.2	0.975	1
Amp_6q21	Amp_7p11.2	0.975	1
Amp_8p11.23	Del_4q22.1	0.975	1
Amp_10p14	Del_13q14.2	0.975	1
Amp_22q12.2	Del_2q22.1	0.975	1
Del_1p36.11	Del_2q34	0.975	1
Del_5q12.1	Del_9p21.3	0.975	1
Del_8p21.3	Del_11q25	0.975	1
ASXL2	RUNX1	0.976	1
CNNM4	KDM6A	0.976	1
CNNM4	Amp_19q12	0.976	1
CNOT1	TSC1	0.976	1
CUL1	PLCXD3	0.976	1
DNAH6	Amp_1p34.2	0.976	1
ERBB3	Amp_12q15	0.976	1
ERBB3	Del_6p25.3	0.976	1
FOXA1	9p-Del	0.976	1
HLA-A	Del_9p21.3	0.976	1
MBD1	Amp_1q23.3	0.976	1
MLL	Amp_19q12	0.976	1
NRAS	18q-Del	0.976	1
NRAS	Del_8p21.3	0.976	1
NRAS	Del_14q24.1	0.976	1
PARD3	RAI1	0.976	1
PKHD1	Amp_4q13.3	0.976	1
PKHD1	Del_7q36.3	0.976	1
PSIP1	Del_11p15.5	0.976	1
RAI1	TSC1	0.976	1
SPTAN1	TXNIP	0.976	1
17q-Amp	8q-Amp	0.976	1
17q-Amp	Amp_1q23.3	0.976	1
1q-Amp	9p-Del	0.976	1
11q-Del	Amp_3p25.2	0.976	1
22q-Del	Amp_6q21	0.976	1
6q-Del	9q-Del	0.976	1
Amp_3p25.2	Amp_12q15	0.976	1
Amp_4p16.3	Amp_5p15.33	0.976	1
Amp_4p16.3	Del_5q12.1	0.976	1
Amp_5p15.33	Amp_22q12.2	0.976	1
Amp_7p21.1	Del_7q36.3	0.976	1
Amp_8p11.21	Amp_17q12	0.976	1
Amp_8p11.21	Del_22q13.32	0.976	1
Amp_12q15	Del_12p13.1	0.976	1
ATM	SHANK1	0.977	1
BCL2L1	RHOB	0.977	1
C3orf70	ERBB3	0.977	1
C3orf70	STAG2	0.977	1
CDKN2A	CNNM4	0.977	1
CDKN2A	NF2	0.977	1
CUL1	Del_16p13.3	0.977	1
ERBB3	METTL3	0.977	1
FAT1	THRAP3	0.977	1
FAT1	Del_1p36.11	0.977	1
FBXW7	IDH1	0.977	1
FGFR3	Del_11p15.5	0.977	1
FOXA1	Del_11q23.3	0.977	1
IDH1	Amp_1p34.2	0.977	1
METTL3	14q-Del	0.977	1
METTL3	4p-Del	0.977	1
METTL3	Del_16p13.3	0.977	1
PSIP1	RUNX1	0.977	1
PSIP1	Del_11q25	0.977	1
RXRA	18q-Del	0.977	1
ZFP36L1	Amp_19q12	0.977	1
ZNF185	7q-Amp	0.977	1
20p-Amp	Del_19p13.3	0.977	1
3p-Amp	Amp_8p11.23	0.977	1
3p-Amp	Del_2q37.1	0.977	1
3q-Amp	Del_3p14.2	0.977	1
5p-Amp	Amp_7p21.1	0.977	1
8q-Amp	Del_18q23	0.977	1
11p-Del	19p-Del	0.977	1
15q-Del	Del_6q27	0.977	1
18q-Del	Del_8p23.3	0.977	1
22q-Del	Amp_4p16.3	0.977	1
Amp_3p25.2	Del_2q34	0.977	1
Amp_6q21	Amp_13q22.1	0.977	1
Amp_8p11.23	Del_22q13.32	0.977	1
Amp_8p11.21	Del_17p12	0.977	1
Del_1p36.11	Del_11q23.3	0.977	1
Del_7q36.3	Del_13q14.2	0.977	1
ATM	IDH1	0.978	1
BCL2L1	MLL3	0.978	1
CDKN2A	RHOB	0.978	1
CREBBP	STAG2	0.978	1
CTNNB1	SHANK1	0.978	1
CUL1	RPTN	0.978	1
CUL1	19q-Amp	0.978	1
DNAH6	Del_16q23.1	0.978	1
ERCC2	SHANK1	0.978	1
ERCC2	Del_3p14.2	0.978	1
FOXA1	HLA-A	0.978	1
FOXA1	RHOA	0.978	1
FOXQ1	NRAS	0.978	1
HLA-A	PTEN	0.978	1
HLA-A	Del_1p36.11	0.978	1
MBD1	Amp_1q21.3	0.978	1
NRAS	Del_1p36.11	0.978	1
PARD3	PKHD1	0.978	1
SHANK1	Del_1p36.11	0.978	1
SPTAN1	14q-Del	0.978	1
STAG2	Del_9p21.3	0.978	1
THRAP3	UNC93B1	0.978	1
TMCO4	Amp_1q21.3	0.978	1
17q-Amp	Amp_1q21.3	0.978	1
20q-Amp	22q-Del	0.978	1
20q-Amp	Del_19p13.3	0.978	1
10q-Del	Del_17p12	0.978	1
15q-Del	Amp_19q13.43	0.978	1
19p-Del	Del_1q32.1	0.978	1
22q-Del	Del_11q23.3	0.978	1
Amp_1q21.3	Del_Xq21.33	0.978	1
Amp_4q13.3	Amp_17q23.3	0.978	1
Amp_6q21	Del_5q12.1	0.978	1
Amp_7p21.1	Del_4q22.1	0.978	1
Amp_7p11.2	Amp_10p14	0.978	1
Amp_12q15	Amp_19q13.43	0.978	1
Amp_19q13.43	Del_19p13.3	0.978	1
Amp_20q11.21	Del_2q22.1	0.978	1
Del_8p23.3	Del_12p13.1	0.978	1
ARID1A	RUNX1	0.979	1
ARID1B	HES1	0.979	1
ARID1B	Amp_6q21	0.979	1
ASXL2	ERBB2	0.979	1
ATM	PIK3CA	0.979	1
ATM	RUNX1	0.979	1
CNOT1	SPTAN1	0.979	1
CNOT1	6q-Del	0.979	1
CTNNB1	MLL2	0.979	1
HES1	KLF5	0.979	1
KLF5	ZBTB7B	0.979	1
MBD1	RAI1	0.979	1
MLL2	PTEN	0.979	1
MLL2	Amp_7p21.1	0.979	1
NRAS	Del_8p23.3	0.979	1
NUDT11	9p-Del	0.979	1
NUDT11	Del_8p23.3	0.979	1
PIK3CA	PKHD1	0.979	1
PIK3CA	Del_4q34.2	0.979	1
PLCXD3	TXNIP	0.979	1
RAI1	17q-Amp	0.979	1
RAI1	Del_1q32.1	0.979	1
RAI1	Del_Xq21.33	0.979	1
RB1	UNC93B1	0.979	1
RB1	Del_22q13.32	0.979	1
RBM10	3q-Amp	0.979	1
RXRA	17p-Del	0.979	1
SCARF2	6q-Del	0.979	1
SCARF2	Del_15q13.1	0.979	1
SHANK1	ZFP36L1	0.979	1
SHANK1	Amp_22q12.2	0.979	1
UNC93B1	Del_4q22.1	0.979	1
ZBTB7B	Del_13q14.2	0.979	1
19q-Amp	5p-Amp	0.979	1
1q-Amp	Del_2q22.1	0.979	1
20p-Amp	Del_12p13.1	0.979	1
7p-Amp	Amp_3p25.2	0.979	1
8q-Amp	Amp_3q26.33	0.979	1
11p-Del	Amp_12q15	0.979	1
15q-Del	Del_18q23	0.979	1
17p-Del	Del_6p25.3	0.979	1
4p-Del	Del_10q23.31	0.979	1
8p-Del	Amp_3q26.33	0.979	1
9p-Del	Amp_1q23.3	0.979	1
Amp_1q21.3	Amp_4q13.3	0.979	1
Amp_3q26.33	Amp_5p15.33	0.979	1
Amp_7p21.1	Amp_16p13.2	0.979	1
Amp_7p21.1	Del_16q23.1	0.979	1
Amp_8q22.3	Del_18q23	0.979	1
Amp_10p14	Del_8p21.3	0.979	1
Del_1p36.11	Del_15q13.1	0.979	1
Del_4q22.1	Del_14q24.1	0.979	1
Del_11p15.5	Del_13q14.2	0.979	1
Del_12p13.1	Del_22q13.32	0.979	1
CDKN1A	Amp_4p16.3	0.98	1
CDKN2A	CUL1	0.98	1
CNNM4	ZFP36L1	0.98	1
ELF3	PSIP1	0.98	1
ERCC2	Amp_8q22.3	0.98	1
FAM47C	RAI1	0.98	1
IDH1	Amp_20q11.21	0.98	1
KDM6A	Del_15q13.1	0.98	1
KIAA1267	Del_2q37.1	0.98	1
MLL3	RXRA	0.98	1
NF1	Amp_19q12	0.98	1
PIK3CA	Del_9p23	0.98	1
RAI1	RBM10	0.98	1
RHOB	3p-Amp	0.98	1
RXRA	Del_2q37.1	0.98	1
SPTAN1	18q-Del	0.98	1
TMCO4	Amp_20q11.21	0.98	1
20q-Amp	Amp_17q23.3	0.98	1
8q-Amp	Amp_6p22.3	0.98	1
11q-Del	Del_2q22.1	0.98	1
Amp_3p25.2	Del_11p15.5	0.98	1
Amp_4p16.3	Del_Xp11.3	0.98	1
Amp_5p15.33	Amp_7p21.1	0.98	1
Amp_8q22.3	Del_3p14.2	0.98	1
Del_2q22.1	Del_11q25	0.98	1
ASXL2	NUDT11	0.981	1
CDKN1A	TSC1	0.981	1
CNOT1	Del_6p25.3	0.981	1
CSMD3	FAM47C	0.981	1
DNAH6	Amp_4q13.3	0.981	1
ELF3	PKHD1	0.981	1
ELF3	9p-Del	0.981	1
ERBB2	Amp_3q26.33	0.981	1
FAM47C	Del_16p13.3	0.981	1
FOXA1	Amp_10p14	0.981	1
HES1	PARD3	0.981	1
KDM6A	Amp_1p34.2	0.981	1
KIAA1267	SHANK1	0.981	1
KRAS	NUDT11	0.981	1
METTL3	Amp_11q13.3	0.981	1
NF2	RB1	0.981	1
NRAS	RUNX1	0.981	1
NUDT11	Del_Xp11.3	0.981	1
PARD3	ZBTB7B	0.981	1
PLCXD3	RPTN	0.981	1
PLCXD3	Del_16q23.1	0.981	1
PSIP1	Del_1q32.1	0.981	1
RAI1	STAG2	0.981	1
RUNX1	UNC93B1	0.981	1
RXRA	8q-Amp	0.981	1
RXRA	Del_18q23	0.981	1
TMCO4	15q-Del	0.981	1
UNC93B1	Del_Xp11.3	0.981	1
20p-Amp	Amp_1q23.3	0.981	1
3p-Amp	Del_9p23	0.981	1
10q-Del	Amp_1q21.3	0.981	1
16p-Del	Del_18q23	0.981	1
18q-Del	Del_2q34	0.981	1
6q-Del	Amp_1q21.3	0.981	1
Amp_3p25.2	Amp_10p14	0.981	1
Amp_8q22.3	Amp_11q13.3	0.981	1
Amp_11q22.2	Del_18q23	0.981	1
Amp_12q15	Del_8p21.3	0.981	1
Amp_17q12	Amp_22q12.2	0.981	1
Del_2q34	Del_14q24.1	0.981	1
ARID1B	FAT1	0.982	1
BCL2L1	4q-Del	0.982	1
CNNM4	KIAA1267	0.982	1
CNNM4	16p-Del	0.982	1
CNNM4	22q-Del	0.982	1
DNAH6	ERBB3	0.982	1
FAM47C	Amp_16p13.2	0.982	1
FGFR3	PIK3CA	0.982	1
FGFR3	TMCO4	0.982	1
FOXQ1	8p-Del	0.982	1
KIAA1267	MLL2	0.982	1
KIAA1267	NF2	0.982	1
KIAA1267	14q-Del	0.982	1
KIAA1267	Del_4q22.1	0.982	1
MLL	Amp_1q21.3	0.982	1
NF2	16p-Del	0.982	1
NFE2L2	Del_4q22.1	0.982	1
NRAS	5q-Del	0.982	1
NUDT11	11q-Del	0.982	1
PIK3CA	STAG2	0.982	1
PTEN	3p-Amp	0.982	1
RBM10	Amp_16p13.2	0.982	1
RHOA	20q-Amp	0.982	1
RXRA	SF1	0.982	1
SF1	16p-Del	0.982	1
SF1	Amp_11q22.2	0.982	1
SHANK1	ZNF185	0.982	1
SPTAN1	Del_15q13.1	0.982	1
TP53	Del_3p14.2	0.982	1
UNC93B1	Del_19p13.3	0.982	1
1q-Amp	Amp_16p13.2	0.982	1
20p-Amp	Amp_11q13.3	0.982	1
20p-Amp	Del_10q23.31	0.982	1
8q-Amp	Amp_5p15.33	0.982	1
8q-Amp	Amp_20q11.21	0.982	1
8q-Amp	Del_16q23.1	0.982	1
10q-Del	Del_4q34.2	0.982	1
14q-Del	16p-Del	0.982	1
16p-Del	Del_4q22.1	0.982	1
5q-Del	Amp_8q22.3	0.982	1
9q-Del	Amp_11q13.3	0.982	1
Amp_1q21.3	Amp_7p21.1	0.982	1
Amp_1q21.3	Del_6q27	0.982	1
Amp_1q23.3	Del_18q23	0.982	1
Amp_3q26.33	Del_22q13.32	0.982	1
Amp_6p22.3	Amp_17q12	0.982	1
Amp_7p11.2	Amp_20q11.21	0.982	1
Amp_8p11.23	Amp_20q11.21	0.982	1
Amp_8p11.23	Del_3p14.2	0.982	1
Amp_8q22.3	Del_5q12.1	0.982	1
Amp_8q22.3	Del_16q23.1	0.982	1
Amp_10p14	Amp_13q22.1	0.982	1
Amp_13q22.1	Del_4q34.2	0.982	1
Amp_19q12	Del_17p12	0.982	1
Amp_22q12.2	Del_3p14.2	0.982	1
Del_3p14.2	Del_16q23.1	0.982	1
ARID1A	MLL	0.983	1
ARID1A	Amp_6p22.3	0.983	1
ATM	C3orf70	0.983	1
CNNM4	Amp_5p15.33	0.983	1
CNOT1	HES1	0.983	1
CSMD3	TXNIP	0.983	1
CTNNB1	Amp_7p21.1	0.983	1
EP300	HES1	0.983	1
EP300	Del_4q22.1	0.983	1
ERBB3	PIK3CA	0.983	1
FAM47C	7q-Amp	0.983	1
FBXW7	PARD3	0.983	1
GNA13	UNC93B1	0.983	1
HES1	RBM10	0.983	1
NF1	STAG2	0.983	1
NF1	Del_6q27	0.983	1
NUDT11	TMCO4	0.983	1
RAI1	7q-Amp	0.983	1
RBM10	20p-Amp	0.983	1
SPTAN1	9q-Del	0.983	1
TMCO4	Amp_17q12	0.983	1
1q-Amp	Del_11q25	0.983	1
20q-Amp	9p-Del	0.983	1
3p-Amp	Amp_22q12.2	0.983	1
11p-Del	Del_22q13.32	0.983	1
19p-Del	Del_16p13.3	0.983	1
Amp_4p16.3	Del_11q25	0.983	1
Amp_6q21	Del_14q24.1	0.983	1
Amp_17q12	Del_1q32.1	0.983	1
Amp_17q23.3	Del_11p15.5	0.983	1
Amp_19q12	Del_19p13.3	0.983	1
Amp_22q12.2	Del_19p13.3	0.983	1
Del_2q34	Del_11q23.3	0.983	1
ARID1B	EP300	0.984	1
ARID1B	SHANK1	0.984	1
ASXL2	PKHD1	0.984	1
ATM	ERBB2	0.984	1
CDKN2A	Del_10q23.31	0.984	1
CNNM4	Amp_12q15	0.984	1
CNNM4	Del_16q23.1	0.984	1
CNOT1	MLL2	0.984	1
CNOT1	NF1	0.984	1
CTNNB1	Amp_17q23.3	0.984	1
ELF3	1q-Amp	0.984	1
ERBB2	IDH1	0.984	1
FOXQ1	PLCXD3	0.984	1
FOXQ1	Del_3p14.2	0.984	1
IDH1	Amp_1q23.3	0.984	1
KIAA1267	Del_6q27	0.984	1
MBD1	Amp_4p16.3	0.984	1
MLL3	PKHD1	0.984	1
MLL3	5q-Del	0.984	1
MLL3	Amp_16p13.2	0.984	1
MLL3	Del_5q12.1	0.984	1
NF1	PTEN	0.984	1
NRAS	Amp_19q13.43	0.984	1
NUDT11	9q-Del	0.984	1
PARD3	Del_13q14.2	0.984	1
PIK3CA	Del_4q22.1	0.984	1
RB1	RUNX1	0.984	1
RBM10	Amp_5p15.33	0.984	1
RHOB	Amp_11q13.3	0.984	1
RPTN	Amp_4q13.3	0.984	1
RPTN	Del_16q23.1	0.984	1
RUNX1	3q-Amp	0.984	1
RUNX1	Del_15q13.1	0.984	1
TMCO4	11q-Del	0.984	1
19q-Amp	Amp_13q22.1	0.984	1
19q-Amp	Del_7q36.3	0.984	1
19q-Amp	Del_18q23	0.984	1
20q-Amp	Del_14q24.1	0.984	1
3q-Amp	11q-Del	0.984	1
3q-Amp	17p-Del	0.984	1
8q-Amp	Del_8p21.3	0.984	1
10q-Del	14q-Del	0.984	1
11q-Del	Del_15q13.1	0.984	1
11q-Del	Del_16p13.3	0.984	1
11q-Del	Del_Xq21.33	0.984	1
4p-Del	Del_15q13.1	0.984	1
6q-Del	Amp_8q22.3	0.984	1
Amp_4q13.3	Del_7q36.3	0.984	1
Amp_6p22.3	Amp_13q22.1	0.984	1
Amp_10p14	Del_6q27	0.984	1
Amp_11q13.3	Del_11p15.5	0.984	1
Amp_11q22.2	Del_11q25	0.984	1
Amp_17q12	Amp_20q11.21	0.984	1
Del_2q37.1	Del_19p13.3	0.984	1
Del_11q23.3	Del_14q24.1	0.984	1
ATM	Amp_1q23.3	0.985	1
BCL2L1	FAM47C	0.985	1
BCL2L1	RBM10	0.985	1
BCL2L1	Del_5q12.1	0.985	1
CDKN1A	Del_11q25	0.985	1
CDKN2A	KIAA1267	0.985	1
CDKN2A	Del_4q34.2	0.985	1
CNNM4	SCARF2	0.985	1
CTNNB1	HRAS	0.985	1
CUL1	22q-Del	0.985	1
ERBB3	RBM10	0.985	1
ERBB3	Del_10q23.31	0.985	1
ERCC2	HES1	0.985	1
ERCC2	ZBTB7B	0.985	1
ERCC2	Amp_1p34.2	0.985	1
ERCC2	Amp_6q21	0.985	1
FAT1	Amp_1q21.3	0.985	1
FOXA1	HRAS	0.985	1
HLA-A	TSC1	0.985	1
IDH1	ZFP36L1	0.985	1
KDM6A	NRAS	0.985	1
KDM6A	UNC93B1	0.985	1
KIAA1267	METTL3	0.985	1
MLL	Del_15q13.1	0.985	1
NUDT11	5p-Amp	0.985	1
PLCXD3	TP53	0.985	1
RB1	Amp_1q21.3	0.985	1
RHOB	RXRA	0.985	1
RHOB	Amp_13q22.1	0.985	1
RHOB	Del_4q34.2	0.985	1
RPTN	Amp_3p25.2	0.985	1
SHANK1	Del_8p21.3	0.985	1
THRAP3	Del_13q14.2	0.985	1
TMCO4	Del_10q23.31	0.985	1
ZFP36L1	Amp_10p14	0.985	1
3p-Amp	Del_9p21.3	0.985	1
7q-Amp	Del_16q23.1	0.985	1
8q-Amp	Amp_7p21.1	0.985	1
11q-Del	Del_6q27	0.985	1
14q-Del	Del_2q34	0.985	1
19p-Del	Amp_3q26.33	0.985	1
6q-Del	Amp_13q22.1	0.985	1
9q-Del	Del_4q34.2	0.985	1
9q-Del	Del_14q24.1	0.985	1
Amp_3p25.2	Del_12p13.1	0.985	1
Amp_5p15.33	Amp_8p11.23	0.985	1
Amp_8p11.21	Del_Xp11.3	0.985	1
Del_2q34	Del_12p13.1	0.985	1
Del_11q25	Del_19p13.3	0.985	1
Del_12p13.1	Del_14q24.1	0.985	1
ATM	Del_Xq21.33	0.986	1
BCL2L1	PSIP1	0.986	1
BCL2L1	5p-Amp	0.986	1
ERBB2	RUNX1	0.986	1
ERBB2	ZNF185	0.986	1
FBXW7	RAI1	0.986	1
FGFR3	PSIP1	0.986	1
HES1	HLA-A	0.986	1
HLA-A	Amp_6q21	0.986	1
KIAA1267	Del_3p14.2	0.986	1
MBD1	SHANK1	0.986	1
METTL3	Del_2q34	0.986	1
MLL2	RHOB	0.986	1
NFE2L2	Del_3p14.2	0.986	1
NRAS	Amp_6q21	0.986	1
NRAS	Del_15q13.1	0.986	1
NUDT11	10q-Del	0.986	1
PLCXD3	Del_Xp11.3	0.986	1
PSIP1	STAG2	0.986	1
RAI1	Del_4q34.2	0.986	1
RHOA	Amp_19q13.43	0.986	1
RHOB	20p-Amp	0.986	1
RXRA	Amp_17q23.3	0.986	1
TXNIP	Amp_1q23.3	0.986	1
19q-Amp	Del_11p15.5	0.986	1
1q-Amp	Amp_1p34.2	0.986	1
3q-Amp	Amp_19q13.43	0.986	1
7p-Amp	8q-Amp	0.986	1
8q-Amp	Del_15q13.1	0.986	1
11p-Del	Del_2q34	0.986	1
11q-Del	16p-Del	0.986	1
11q-Del	22q-Del	0.986	1
15q-Del	Amp_6q21	0.986	1
16p-Del	Amp_1q21.3	0.986	1
22q-Del	Amp_1q21.3	0.986	1
6q-Del	Amp_19q13.43	0.986	1
Amp_1p34.2	Amp_3p25.2	0.986	1
Amp_1q23.3	Del_19p13.3	0.986	1
Amp_6q21	Del_4q22.1	0.986	1
Amp_7p11.2	Amp_22q12.2	0.986	1
Amp_10p14	Amp_20q11.21	0.986	1
Amp_10p14	Del_22q13.32	0.986	1
Amp_17q23.3	Amp_19q12	0.986	1
Amp_20q11.21	Del_9p23	0.986	1
Del_2q34	Del_15q13.1	0.986	1
Del_3p14.2	Del_8p23.3	0.986	1
Del_8p23.3	Del_16q23.1	0.986	1
ARID1B	C3orf70	0.987	1
BCL2L1	11p-Del	0.987	1
BCL2L1	17p-Del	0.987	1
CDKN1A	PKHD1	0.987	1
CDKN2A	4q-Del	0.987	1
ELF3	KDM6A	0.987	1
ERCC2	Amp_1q21.3	0.987	1
FOXQ1	RPTN	0.987	1
FOXQ1	Amp_7p11.2	0.987	1
HLA-A	PKHD1	0.987	1
IDH1	MLL3	0.987	1
IDH1	NFE2L2	0.987	1
IDH1	Amp_11q22.2	0.987	1
KDM6A	9q-Del	0.987	1
NUDT11	11p-Del	0.987	1
PSIP1	20p-Amp	0.987	1
RAI1	Amp_1q23.3	0.987	1
RHOB	RPTN	0.987	1
RHOB	4q-Del	0.987	1
RPTN	THRAP3	0.987	1
RXRA	Del_17p12	0.987	1
TSC1	17q-Amp	0.987	1
TXNIP	Del_4q34.2	0.987	1
20p-Amp	7q-Amp	0.987	1
3p-Amp	Del_11q23.3	0.987	1
3q-Amp	Amp_1q23.3	0.987	1
3q-Amp	Del_9p21.3	0.987	1
11p-Del	8p-Del	0.987	1
11q-Del	Amp_3q26.33	0.987	1
14q-Del	Del_11q23.3	0.987	1
16p-Del	Amp_6p22.3	0.987	1
16p-Del	Amp_22q12.2	0.987	1
18q-Del	Del_8p21.3	0.987	1
19p-Del	4p-Del	0.987	1
5q-Del	Amp_16p13.2	0.987	1
Amp_1q21.3	Amp_6q21	0.987	1
Amp_3q26.33	Amp_6p22.3	0.987	1
Amp_6p22.3	Del_3p14.2	0.987	1
Amp_7p11.2	Del_16q23.1	0.987	1
Amp_8p11.21	Del_11p15.5	0.987	1
Amp_11q13.3	Del_3p14.2	0.987	1
Amp_20q11.21	Del_19p13.3	0.987	1
Amp_22q12.2	Del_10q23.31	0.987	1
Del_1p36.11	Del_7q36.3	0.987	1
Del_4q22.1	Del_8p23.3	0.987	1
Del_5q12.1	Del_16q23.1	0.987	1
ARID1A	Del_Xq21.33	0.988	1
ASXL2	PLCXD3	0.988	1
ASXL2	Del_18q23	0.988	1
C3orf70	TMCO4	0.988	1
CNNM4	5p-Amp	0.988	1
CREBBP	KRAS	0.988	1
CSMD3	Amp_6q21	0.988	1
CUL1	Del_1q32.1	0.988	1
ELF3	RHOA	0.988	1
ERBB3	7q-Amp	0.988	1
ERCC2	Amp_6p22.3	0.988	1
ERCC2	Del_22q13.32	0.988	1
FGFR3	KIAA1267	0.988	1
FOXA1	Amp_6p22.3	0.988	1
HES1	Amp_6p22.3	0.988	1
IDH1	KLF5	0.988	1
IDH1	19p-Del	0.988	1
MLL3	PLCXD3	0.988	1
NF1	Amp_7p11.2	0.988	1
NF2	UNC93B1	0.988	1
NRAS	SF1	0.988	1
PKHD1	Amp_13q22.1	0.988	1
PTEN	Del_16q23.1	0.988	1
RBM10	Del_14q24.1	0.988	1
RXRA	TXNIP	0.988	1
SF1	Amp_8q22.3	0.988	1
SPTAN1	9p-Del	0.988	1
THRAP3	Del_6p25.3	0.988	1
TP53	Amp_3q26.33	0.988	1
ZFP36L1	Del_16q23.1	0.988	1
20q-Amp	Amp_8p11.21	0.988	1
3q-Amp	Del_11q23.3	0.988	1
8q-Amp	Amp_17q23.3	0.988	1
11p-Del	Del_12p13.1	0.988	1
14q-Del	Del_12p13.1	0.988	1
Amp_1p34.2	Del_4q22.1	0.988	1
Amp_1q21.3	Amp_6p22.3	0.988	1
Amp_1q21.3	Amp_19q13.43	0.988	1
Amp_3p25.2	Amp_8p11.23	0.988	1
Amp_3p25.2	Del_2q37.1	0.988	1
Amp_6p22.3	Amp_6q21	0.988	1
Amp_7p21.1	Amp_17q23.3	0.988	1
Amp_7p21.1	Amp_19q13.43	0.988	1
Amp_7p21.1	Del_5q12.1	0.988	1
Amp_7p11.2	Amp_8p11.21	0.988	1
Amp_8p11.23	Del_7q36.3	0.988	1
Amp_19q13.43	Del_14q24.1	0.988	1
Del_1q32.1	Del_2q34	0.988	1
Del_2q22.1	Del_11q23.3	0.988	1
Del_6p25.3	Del_17p12	0.988	1
Del_6q27	Del_Xp11.3	0.988	1
Del_7q36.3	Del_16p13.3	0.988	1
Del_8p23.3	Del_9p23	0.988	1
Del_11q23.3	Del_15q13.1	0.988	1
ARID1A	KLF5	0.989	1
ARID1B	ELF3	0.989	1
ARID1B	ZFP36L1	0.989	1
ATM	ELF3	0.989	1
ATM	NF1	0.989	1
BCL2L1	RHOA	0.989	1
CDKN1A	HES1	0.989	1
CDKN1A	ZBTB7B	0.989	1
CDKN1A	9p-Del	0.989	1
CNNM4	EP300	0.989	1
CNOT1	SHANK1	0.989	1
CTNNB1	8q-Amp	0.989	1
ELF3	Amp_20q11.21	0.989	1
EP300	NF2	0.989	1
ERBB2	PARD3	0.989	1
ERBB3	10q-Del	0.989	1
FAT1	GNA13	0.989	1
HES1	SHANK1	0.989	1
IDH1	Del_16q23.1	0.989	1
KIAA1267	SPTAN1	0.989	1
MLL	ZNF185	0.989	1
NF2	PSIP1	0.989	1
PARD3	Del_4q22.1	0.989	1
PIK3CA	Del_9p21.3	0.989	1
PKHD1	Amp_20q11.21	0.989	1
PTEN	Del_22q13.32	0.989	1
RAI1	SHANK1	0.989	1
RAI1	Del_2q34	0.989	1
RHOA	8q-Amp	0.989	1
RHOB	Amp_8q22.3	0.989	1
STAG2	9q-Del	0.989	1
TSC1	9q-Del	0.989	1
20p-Amp	9q-Del	0.989	1
20q-Amp	Del_1q32.1	0.989	1
3p-Amp	Del_12p13.1	0.989	1
3q-Amp	Amp_22q12.2	0.989	1
3q-Amp	Del_2q22.1	0.989	1
14q-Del	Amp_6p22.3	0.989	1
16p-Del	Amp_10p14	0.989	1
19p-Del	Del_11q23.3	0.989	1
22q-Del	Amp_10p14	0.989	1
6q-Del	Amp_22q12.2	0.989	1
6q-Del	Del_Xq21.33	0.989	1
8p-Del	Amp_8q22.3	0.989	1
8p-Del	Del_4q22.1	0.989	1
Amp_1q23.3	Amp_10p14	0.989	1
Amp_1q23.3	Del_6p25.3	0.989	1
Amp_3p25.2	Del_15q13.1	0.989	1
Amp_4p16.3	Amp_12q15	0.989	1
Amp_6p22.3	Del_2q37.1	0.989	1
Amp_6p22.3	Del_4q34.2	0.989	1
Amp_7p11.2	Amp_8q22.3	0.989	1
Amp_8p11.21	Del_15q13.1	0.989	1
Amp_16p13.2	Amp_20q11.21	0.989	1
Amp_16p13.2	Del_22q13.32	0.989	1
Amp_20q11.21	Del_22q13.32	0.989	1
Amp_22q12.2	Del_4q34.2	0.989	1
Amp_22q12.2	Del_11p15.5	0.989	1
Del_5q12.1	Del_Xp11.3	0.989	1
ARID1A	ERBB3	0.99	1
ARID1A	METTL3	0.99	1
ASXL2	MLL	0.99	1
ASXL2	Del_11p15.5	0.99	1
CDKN2A	FAT1	0.99	1
CDKN2A	PTEN	0.99	1
CDKN2A	THRAP3	0.99	1
CTNNB1	FOXA1	0.99	1
CTNNB1	PTEN	0.99	1
CTNNB1	THRAP3	0.99	1
DNAH6	TMCO4	0.99	1
DNAH6	17q-Amp	0.99	1
EP300	Del_8p21.3	0.99	1
ERBB2	SCARF2	0.99	1
ERBB3	Amp_6p22.3	0.99	1
FAM47C	Amp_8q22.3	0.99	1
FAT1	Del_10q23.31	0.99	1
FOXA1	RHOB	0.99	1
HES1	Amp_19q13.43	0.99	1
KDM6A	NF1	0.99	1
KDM6A	Amp_17q12	0.99	1
KDM6A	Del_8p23.3	0.99	1
KRAS	ZNF185	0.99	1
KRAS	19q-Amp	0.99	1
MBD1	PKHD1	0.99	1
MBD1	Amp_8p11.21	0.99	1
MLL	RB1	0.99	1
MLL2	Del_7q36.3	0.99	1
NFE2L2	Amp_3q26.33	0.99	1
NRAS	Amp_1p34.2	0.99	1
PLCXD3	ZBTB7B	0.99	1
PLCXD3	Amp_6q21	0.99	1
PSIP1	Amp_20q11.21	0.99	1
RHOB	THRAP3	0.99	1
RHOB	20q-Amp	0.99	1
RUNX1	ZNF185	0.99	1
RUNX1	Amp_1q23.3	0.99	1
RXRA	Del_6p25.3	0.99	1
SCARF2	ZFP36L1	0.99	1
SF1	TP53	0.99	1
TMCO4	9p-Del	0.99	1
TP53	Del_16q23.1	0.99	1
TP53	Del_17p12	0.99	1
17q-Amp	Amp_8p11.21	0.99	1
17q-Amp	Del_17p12	0.99	1
20p-Amp	Del_8p23.3	0.99	1
5p-Amp	Amp_13q22.1	0.99	1
5p-Amp	Del_16q23.1	0.99	1
14q-Del	Amp_19q12	0.99	1
16p-Del	Del_6p25.3	0.99	1
18q-Del	Del_10q23.31	0.99	1
18q-Del	Del_11q25	0.99	1
22q-Del	Del_6p25.3	0.99	1
5q-Del	Del_4q22.1	0.99	1
9p-Del	Del_Xq21.33	0.99	1
Amp_3p25.2	Amp_13q22.1	0.99	1
Amp_7p11.2	Amp_19q12	0.99	1
Amp_8p11.23	Amp_13q22.1	0.99	1
Amp_8p11.21	Del_6p25.3	0.99	1
Amp_8q22.3	Del_17p12	0.99	1
Amp_16p13.2	Del_Xq21.33	0.99	1
Del_1q32.1	Del_17p12	0.99	1
Del_11p15.5	Del_16p13.3	0.99	1
ARID1A	IDH1	0.991	1
ATM	NFE2L2	0.991	1
ATM	RPTN	0.991	1
ATM	ZBTB7B	0.991	1
ATM	Amp_1p34.2	0.991	1
ATM	Amp_8p11.23	0.991	1
C3orf70	RAI1	0.991	1
CDKN1A	Del_18q23	0.991	1
CDKN2A	NF1	0.991	1
CSMD3	HLA-A	0.991	1
CSMD3	UNC93B1	0.991	1
CSMD3	Del_13q14.2	0.991	1
DNAH6	PARD3	0.991	1
ERBB3	IDH1	0.991	1
FAM47C	IDH1	0.991	1
HRAS	Del_12p13.1	0.991	1
IDH1	RBM10	0.991	1
IDH1	Amp_10p14	0.991	1
KDM6A	Amp_6q21	0.991	1
KDM6A	Del_8p21.3	0.991	1
METTL3	Del_3p14.2	0.991	1
NF1	TMCO4	0.991	1
NUDT11	4p-Del	0.991	1
PKHD1	SHANK1	0.991	1
PSIP1	Del_5q12.1	0.991	1
RB1	Del_2q34	0.991	1
SCARF2	Amp_7p21.1	0.991	1
SHANK1	Del_2q37.1	0.991	1
TP53	8p-Del	0.991	1
TP53	Del_13q14.2	0.991	1
TXNIP	11q-Del	0.991	1
UNC93B1	4p-Del	0.991	1
7p-Amp	Amp_6p22.3	0.991	1
11p-Del	Del_13q14.2	0.991	1
11q-Del	Del_12p13.1	0.991	1
15q-Del	Del_17p12	0.991	1
16p-Del	4q-Del	0.991	1
16p-Del	Amp_4q13.3	0.991	1
16p-Del	Del_15q13.1	0.991	1
18q-Del	Del_3p14.2	0.991	1
19p-Del	22q-Del	0.991	1
19p-Del	Del_11q25	0.991	1
9p-Del	Del_6q27	0.991	1
Amp_1q23.3	Amp_3q26.33	0.991	1
Amp_1q23.3	Amp_16p13.2	0.991	1
Del_3p14.2	Del_14q24.1	0.991	1
Del_8p21.3	Del_12p13.1	0.991	1
Del_17p12	Del_22q13.32	0.991	1
C3orf70	PSIP1	0.992	1
CDKN2A	UNC93B1	0.992	1
CNNM4	PLCXD3	0.992	1
CTNNB1	KRAS	0.992	1
CTNNB1	RUNX1	0.992	1
CUL1	MLL2	0.992	1
CUL1	15q-Del	0.992	1
DNAH6	HES1	0.992	1
DNAH6	Amp_19q12	0.992	1
ELF3	GNA13	0.992	1
EP300	MLL2	0.992	1
ERBB3	FAT1	0.992	1
FBXW7	MBD1	0.992	1
FGFR3	Del_11q25	0.992	1
GNA13	Del_6q27	0.992	1
MBD1	ZNF185	0.992	1
MBD1	Del_7q36.3	0.992	1
MLL2	SCARF2	0.992	1
NF1	8q-Amp	0.992	1
NF2	PLCXD3	0.992	1
PSIP1	20q-Amp	0.992	1
PSIP1	14q-Del	0.992	1
PSIP1	Del_11q23.3	0.992	1
PTEN	Amp_22q12.2	0.992	1
SHANK1	Del_16q23.1	0.992	1
SPTAN1	Del_18q23	0.992	1
STAG2	1q-Amp	0.992	1
STAG2	4p-Del	0.992	1
TMCO4	Amp_1p34.2	0.992	1
TMCO4	Amp_4q13.3	0.992	1
TMCO4	Amp_17q23.3	0.992	1
TMCO4	Del_11q25	0.992	1
TXNIP	Amp_6q21	0.992	1
17q-Amp	19q-Amp	0.992	1
19q-Amp	9p-Del	0.992	1
1q-Amp	Del_16p13.3	0.992	1
20p-Amp	22q-Del	0.992	1
20q-Amp	7q-Amp	0.992	1
20q-Amp	Amp_7p21.1	0.992	1
20q-Amp	Del_5q12.1	0.992	1
3p-Amp	Del_11p15.5	0.992	1
3q-Amp	Del_11q25	0.992	1
7p-Amp	Amp_8q22.3	0.992	1
7p-Amp	Amp_10p14	0.992	1
10q-Del	Amp_16p13.2	0.992	1
10q-Del	Del_5q12.1	0.992	1
10q-Del	Del_11q25	0.992	1
11p-Del	Amp_19q13.43	0.992	1
11p-Del	Del_6p25.3	0.992	1
11q-Del	Del_2q34	0.992	1
14q-Del	Del_3p14.2	0.992	1
14q-Del	Del_16p13.3	0.992	1
17p-Del	Del_Xp11.3	0.992	1
18q-Del	Del_1p36.11	0.992	1
18q-Del	Del_4q34.2	0.992	1
19p-Del	Del_8p23.3	0.992	1
4p-Del	Del_3p14.2	0.992	1
4q-Del	Del_7q36.3	0.992	1
5q-Del	Del_9p21.3	0.992	1
8p-Del	Amp_8p11.21	0.992	1
9p-Del	Del_7q36.3	0.992	1
Amp_1p34.2	Amp_1q21.3	0.992	1
Amp_1q23.3	Del_22q13.32	0.992	1
Amp_3p25.2	Del_8p23.3	0.992	1
Amp_5p15.33	Amp_6p22.3	0.992	1
Amp_7p21.1	Del_8p23.3	0.992	1
Amp_7p11.2	Amp_19q13.43	0.992	1
Amp_8q22.3	Del_11p15.5	0.992	1
Amp_12q15	Del_11p15.5	0.992	1
Amp_19q12	Del_6p25.3	0.992	1
Amp_22q12.2	Del_1p36.11	0.992	1
Del_1p36.11	Del_16p13.3	0.992	1
Del_1p36.11	Del_Xp11.3	0.992	1
Del_2q22.1	Del_22q13.32	0.992	1
Del_6q27	Del_Xq21.33	0.992	1
Del_7q36.3	Del_9p23	0.992	1
Del_8p21.3	Del_16q23.1	0.992	1
Del_11q25	Del_15q13.1	0.992	1
ARID1A	ATM	0.993	1
ARID1B	Del_6p25.3	0.993	1
ASXL2	Amp_1q21.3	0.993	1
ATM	ERCC2	0.993	1
BCL2L1	FOXA1	0.993	1
CDKN1A	11q-Del	0.993	1
CDKN2A	Del_4q22.1	0.993	1
CDKN2A	Del_6q27	0.993	1
CNNM4	METTL3	0.993	1
CNOT1	ZFP36L1	0.993	1
CTNNB1	Del_Xq21.33	0.993	1
ERBB2	Del_10q23.31	0.993	1
ERCC2	ZNF185	0.993	1
FAT1	Amp_4q13.3	0.993	1
FOXA1	17q-Amp	0.993	1
IDH1	5p-Amp	0.993	1
KDM6A	Del_11q25	0.993	1
MLL3	SCARF2	0.993	1
NF1	Del_2q22.1	0.993	1
NFE2L2	Del_1p36.11	0.993	1
NRAS	Amp_22q12.2	0.993	1
PIK3CA	UNC93B1	0.993	1
PTEN	Del_1q32.1	0.993	1
RAI1	TXNIP	0.993	1
RAI1	Amp_22q12.2	0.993	1
RAI1	Del_2q37.1	0.993	1
RHOA	20p-Amp	0.993	1
RHOB	Amp_20q11.21	0.993	1
RPTN	Del_2q34	0.993	1
THRAP3	Del_Xq21.33	0.993	1
TMCO4	1q-Amp	0.993	1
TMCO4	9q-Del	0.993	1
TMCO4	Del_8p21.3	0.993	1
TP53	4p-Del	0.993	1
1q-Amp	16p-Del	0.993	1
1q-Amp	Del_Xq21.33	0.993	1
20p-Amp	7p-Amp	0.993	1
8q-Amp	Amp_22q12.2	0.993	1
10q-Del	4q-Del	0.993	1
10q-Del	Del_3p14.2	0.993	1
11q-Del	Del_22q13.32	0.993	1
14q-Del	Amp_3p25.2	0.993	1
14q-Del	Del_9p23	0.993	1
15q-Del	Amp_3p25.2	0.993	1
15q-Del	Del_4q22.1	0.993	1
22q-Del	Amp_16p13.2	0.993	1
4p-Del	Del_11p15.5	0.993	1
8p-Del	Amp_16p13.2	0.993	1
Amp_3p25.2	Amp_3q26.33	0.993	1
Amp_6p22.3	Del_2q34	0.993	1
Amp_7p21.1	Del_6p25.3	0.993	1
Amp_16p13.2	Del_14q24.1	0.993	1
Del_1p36.11	Del_2q37.1	0.993	1
Del_1p36.11	Del_10q23.31	0.993	1
Del_1p36.11	Del_Xq21.33	0.993	1
Del_4q22.1	Del_6q27	0.993	1
Del_4q22.1	Del_8p21.3	0.993	1
Del_6p25.3	Del_10q23.31	0.993	1
Del_9p23	Del_Xq21.33	0.993	1
ARID1B	Amp_3p25.2	0.994	1
ASXL2	TSC1	0.994	1
BCL2L1	ELF3	0.994	1
CNOT1	19q-Amp	0.994	1
CTNNB1	7p-Amp	0.994	1
CUL1	MLL	0.994	1
ELF3	RHOB	0.994	1
EP300	PLCXD3	0.994	1
EP300	16p-Del	0.994	1
FAT1	NFE2L2	0.994	1
FBXW7	Del_11q23.3	0.994	1
FOXA1	Del_4q34.2	0.994	1
GNA13	SPTAN1	0.994	1
HLA-A	NUDT11	0.994	1
KDM6A	PLCXD3	0.994	1
KIAA1267	NRAS	0.994	1
KIAA1267	PIK3CA	0.994	1
KIAA1267	UNC93B1	0.994	1
KLF5	PARD3	0.994	1
KLF5	PKHD1	0.994	1
MBD1	Del_8p23.3	0.994	1
METTL3	Del_2q37.1	0.994	1
METTL3	Del_16q23.1	0.994	1
MLL2	TMCO4	0.994	1
MLL3	STAG2	0.994	1
NF2	TXNIP	0.994	1
NRAS	RXRA	0.994	1
PSIP1	11p-Del	0.994	1
PTEN	Del_4q34.2	0.994	1
RAI1	RXRA	0.994	1
SCARF2	Amp_12q15	0.994	1
THRAP3	Del_4q34.2	0.994	1
TMCO4	14q-Del	0.994	1
TMCO4	Del_8p23.3	0.994	1
TP53	Del_8p23.3	0.994	1
17q-Amp	Del_16q23.1	0.994	1
20p-Amp	Del_8p21.3	0.994	1
20q-Amp	Amp_1q23.3	0.994	1
20q-Amp	Amp_8q22.3	0.994	1
3p-Amp	Amp_1q23.3	0.994	1
5p-Amp	Del_5q12.1	0.994	1
7p-Amp	Del_4q34.2	0.994	1
7q-Amp	Amp_8q22.3	0.994	1
7q-Amp	Amp_22q12.2	0.994	1
10q-Del	Del_4q22.1	0.994	1
11p-Del	15q-Del	0.994	1
11p-Del	16p-Del	0.994	1
11q-Del	Del_5q12.1	0.994	1
14q-Del	9q-Del	0.994	1
14q-Del	Del_1q32.1	0.994	1
18q-Del	Del_4q22.1	0.994	1
19p-Del	Del_16q23.1	0.994	1
4p-Del	9q-Del	0.994	1
4p-Del	Del_19p13.3	0.994	1
6q-Del	Del_10q23.31	0.994	1
8p-Del	Del_16q23.1	0.994	1
9p-Del	Amp_11q13.3	0.994	1
9p-Del	Del_4q22.1	0.994	1
Amp_1q21.3	Amp_11q13.3	0.994	1
Amp_1q21.3	Amp_22q12.2	0.994	1
Amp_1q21.3	Del_5q12.1	0.994	1
Amp_1q21.3	Del_14q24.1	0.994	1
Amp_1q23.3	Amp_7p21.1	0.994	1
Amp_1q23.3	Del_12p13.1	0.994	1
Amp_3p25.2	Del_8p21.3	0.994	1
Amp_3q26.33	Del_6q27	0.994	1
Amp_3q26.33	Del_11q25	0.994	1
Amp_4q13.3	Del_2q22.1	0.994	1
Amp_6p22.3	Del_14q24.1	0.994	1
Amp_6p22.3	Del_16q23.1	0.994	1
Amp_7p21.1	Amp_10p14	0.994	1
Amp_10p14	Del_7q36.3	0.994	1
Amp_10p14	Del_16q23.1	0.994	1
Amp_11q22.2	Del_11q23.3	0.994	1
Amp_12q15	Del_Xq21.33	0.994	1
Amp_13q22.1	Del_Xq21.33	0.994	1
Amp_16p13.2	Del_5q12.1	0.994	1
Amp_17q23.3	Del_16q23.1	0.994	1
Amp_19q13.43	Del_8p21.3	0.994	1
Amp_19q13.43	Del_11p15.5	0.994	1
Amp_19q13.43	Del_17p12	0.994	1
Amp_20q11.21	Del_8p21.3	0.994	1
Del_1p36.11	Del_4q34.2	0.994	1
Del_2q22.1	Del_7q36.3	0.994	1
Del_3p14.2	Del_16p13.3	0.994	1
Del_4q22.1	Del_10q23.31	0.994	1
Del_6p25.3	Del_8p23.3	0.994	1
Del_10q23.31	Del_11p15.5	0.994	1
Del_11p15.5	Del_22q13.32	0.994	1
ARID1A	FAM47C	0.995	1
ARID1A	RBM10	0.995	1
ARID1B	RAI1	0.995	1
ARID1B	UNC93B1	0.995	1
CDKN1A	FGFR3	0.995	1
CDKN2A	PLCXD3	0.995	1
CNNM4	RPTN	0.995	1
CSMD3	PLCXD3	0.995	1
CTNNB1	PARD3	0.995	1
EP300	MBD1	0.995	1
EP300	Del_16p13.3	0.995	1
ERCC2	RUNX1	0.995	1
FAM47C	Amp_7p11.2	0.995	1
FBXW7	METTL3	0.995	1
FOXQ1	HES1	0.995	1
FOXQ1	ZBTB7B	0.995	1
GNA13	11p-Del	0.995	1
GNA13	Del_Xp11.3	0.995	1
HES1	PTEN	0.995	1
KRAS	RXRA	0.995	1
KRAS	Amp_8q22.3	0.995	1
NF1	PIK3CA	0.995	1
NF1	7p-Amp	0.995	1
NF1	Amp_7p21.1	0.995	1
NRAS	Amp_19q12	0.995	1
PARD3	THRAP3	0.995	1
PTEN	Del_2q34	0.995	1
RBM10	STAG2	0.995	1
RHOB	TMCO4	0.995	1
RPTN	15q-Del	0.995	1
RXRA	Del_8p23.3	0.995	1
RXRA	Del_14q24.1	0.995	1
TMCO4	Amp_1q23.3	0.995	1
TP53	Amp_6q21	0.995	1
TXNIP	Amp_3p25.2	0.995	1
UNC93B1	4q-Del	0.995	1
3q-Amp	Amp_20q11.21	0.995	1
7q-Amp	8q-Amp	0.995	1
8q-Amp	Amp_11q22.2	0.995	1
10q-Del	17p-Del	0.995	1
11p-Del	Amp_1q21.3	0.995	1
11p-Del	Amp_1q23.3	0.995	1
11p-Del	Del_15q13.1	0.995	1
11q-Del	15q-Del	0.995	1
11q-Del	Amp_1q23.3	0.995	1
14q-Del	Amp_1q23.3	0.995	1
14q-Del	Amp_13q22.1	0.995	1
15q-Del	Del_19p13.3	0.995	1
16p-Del	Amp_5p15.33	0.995	1
17p-Del	Del_1q32.1	0.995	1
17p-Del	Del_2q34	0.995	1
17p-Del	Del_15q13.1	0.995	1
17p-Del	Del_16p13.3	0.995	1
22q-Del	Amp_5p15.33	0.995	1
4p-Del	Del_2q37.1	0.995	1
4p-Del	Del_16q23.1	0.995	1
5q-Del	Del_2q37.1	0.995	1
5q-Del	Del_16p13.3	0.995	1
6q-Del	Amp_20q11.21	0.995	1
9p-Del	Amp_20q11.21	0.995	1
Amp_1p34.2	Amp_8p11.21	0.995	1
Amp_1p34.2	Del_15q13.1	0.995	1
Amp_1q23.3	Amp_4p16.3	0.995	1
Amp_1q23.3	Amp_8p11.21	0.995	1
Amp_1q23.3	Amp_17q23.3	0.995	1
Amp_3q26.33	Del_8p23.3	0.995	1
Amp_4q13.3	Amp_7p21.1	0.995	1
Amp_5p15.33	Del_14q24.1	0.995	1
Amp_7p21.1	Del_4q34.2	0.995	1
Amp_8p11.23	Del_Xp11.3	0.995	1
Amp_8q22.3	Amp_20q11.21	0.995	1
Amp_10p14	Del_2q34	0.995	1
Amp_11q13.3	Amp_20q11.21	0.995	1
Amp_11q13.3	Del_9p21.3	0.995	1
Amp_17q23.3	Amp_22q12.2	0.995	1
Amp_20q11.21	Del_6p25.3	0.995	1
Amp_20q11.21	Del_14q24.1	0.995	1
Del_1q32.1	Del_22q13.32	0.995	1
Del_2q22.1	Del_11p15.5	0.995	1
Del_4q22.1	Del_18q23	0.995	1
Del_4q34.2	Del_12p13.1	0.995	1
Del_4q34.2	Del_22q13.32	0.995	1
Del_5q12.1	Del_6p25.3	0.995	1
Del_6q27	Del_7q36.3	0.995	1
Del_6q27	Del_18q23	0.995	1
Del_8p21.3	Del_9p23	0.995	1
Del_9p23	Del_14q24.1	0.995	1
Del_11q25	Del_18q23	0.995	1
ARID1B	FBXW7	0.996	1
ARID1B	MLL3	0.996	1
ARID1B	PSIP1	0.996	1
ARID1B	Amp_1p34.2	0.996	1
ASXL2	11p-Del	0.996	1
ATM	MLL2	0.996	1
CDKN1A	18q-Del	0.996	1
CDKN2A	MLL2	0.996	1
CDKN2A	ZFP36L1	0.996	1
CNNM4	NF1	0.996	1
CNOT1	PARD3	0.996	1
CNOT1	Amp_10p14	0.996	1
ERBB2	RB1	0.996	1
ERBB2	5p-Amp	0.996	1
ERBB3	GNA13	0.996	1
ERCC2	FBXW7	0.996	1
ERCC2	NF1	0.996	1
ERCC2	Amp_17q12	0.996	1
FGFR3	SPTAN1	0.996	1
FGFR3	18q-Del	0.996	1
FOXQ1	RAI1	0.996	1
FOXQ1	Amp_19q13.43	0.996	1
GNA13	KIAA1267	0.996	1
GNA13	MBD1	0.996	1
HES1	Del_16q23.1	0.996	1
KDM6A	PIK3CA	0.996	1
METTL3	Del_14q24.1	0.996	1
MLL	PIK3CA	0.996	1
RAI1	THRAP3	0.996	1
RAI1	Del_6p25.3	0.996	1
RB1	16p-Del	0.996	1
RB1	22q-Del	0.996	1
RBM10	Del_6p25.3	0.996	1
RHOA	Amp_5p15.33	0.996	1
RPTN	3q-Amp	0.996	1
RXRA	17q-Amp	0.996	1
SCARF2	SHANK1	0.996	1
SHANK1	TXNIP	0.996	1
SHANK1	Amp_6p22.3	0.996	1
SPTAN1	15q-Del	0.996	1
TP53	4q-Del	0.996	1
19q-Amp	Amp_17q23.3	0.996	1
19q-Amp	Del_3p14.2	0.996	1
1q-Amp	Del_11q23.3	0.996	1
3q-Amp	8q-Amp	0.996	1
3q-Amp	Amp_3p25.2	0.996	1
5p-Amp	Amp_7p11.2	0.996	1
8q-Amp	Del_1q32.1	0.996	1
10q-Del	Del_6p25.3	0.996	1
10q-Del	Del_7q36.3	0.996	1
10q-Del	Del_18q23	0.996	1
10q-Del	Del_19p13.3	0.996	1
11p-Del	4q-Del	0.996	1
11q-Del	Del_14q24.1	0.996	1
14q-Del	Amp_22q12.2	0.996	1
15q-Del	Del_1p36.11	0.996	1
16p-Del	Del_Xq21.33	0.996	1
17p-Del	Amp_4p16.3	0.996	1
18q-Del	Del_17p12	0.996	1
19p-Del	Del_5q12.1	0.996	1
4p-Del	Del_2q34	0.996	1
4q-Del	Del_8p21.3	0.996	1
4q-Del	Del_14q24.1	0.996	1
6q-Del	Del_7q36.3	0.996	1
8p-Del	Amp_1q23.3	0.996	1
Amp_1q21.3	Amp_8q22.3	0.996	1
Amp_1q21.3	Amp_10p14	0.996	1
Amp_1q23.3	Amp_11q13.3	0.996	1
Amp_1q23.3	Del_8p21.3	0.996	1
Amp_1q23.3	Del_17p12	0.996	1
Amp_3p25.2	Del_13q14.2	0.996	1
Amp_5p15.33	Amp_19q12	0.996	1
Amp_6p22.3	Amp_16p13.2	0.996	1
Amp_7p11.2	Amp_8p11.23	0.996	1
Amp_8p11.23	Del_8p23.3	0.996	1
Amp_8p11.21	Del_14q24.1	0.996	1
Amp_8q22.3	Amp_11q22.2	0.996	1
Amp_10p14	Del_2q37.1	0.996	1
Amp_16p13.2	Amp_17q12	0.996	1
Amp_17q23.3	Amp_20q11.21	0.996	1
Amp_17q23.3	Del_17p12	0.996	1
Amp_19q13.43	Del_5q12.1	0.996	1
Amp_19q13.43	Del_8p23.3	0.996	1
Amp_19q13.43	Del_16p13.3	0.996	1
Amp_20q11.21	Del_1q32.1	0.996	1
Amp_20q11.21	Del_8p23.3	0.996	1
Amp_20q11.21	Del_Xq21.33	0.996	1
Del_1p36.11	Del_9p23	0.996	1
Del_1q32.1	Del_14q24.1	0.996	1
Del_2q34	Del_22q13.32	0.996	1
Del_3p14.2	Del_7q36.3	0.996	1
Del_9p21.3	Del_Xq21.33	0.996	1
ATM	FAT1	0.997	1
CDKN2A	TP53	0.997	1
CREBBP	RB1	0.997	1
DNAH6	SCARF2	0.997	1
ERCC2	MBD1	0.997	1
ERCC2	Amp_8p11.21	0.997	1
FAT1	Del_5q12.1	0.997	1
GNA13	Del_11p15.5	0.997	1
HES1	MLL2	0.997	1
HES1	RXRA	0.997	1
HES1	17q-Amp	0.997	1
IDH1	PKHD1	0.997	1
IDH1	1q-Amp	0.997	1
IDH1	Amp_4q13.3	0.997	1
KIAA1267	RHOB	0.997	1
MBD1	PARD3	0.997	1
MBD1	ZBTB7B	0.997	1
MLL2	Amp_1q21.3	0.997	1
MLL2	Amp_1q23.3	0.997	1
PIK3CA	9p-Del	0.997	1
RAI1	Amp_3p25.2	0.997	1
RHOA	5p-Amp	0.997	1
RHOB	TP53	0.997	1
RXRA	8p-Del	0.997	1
SPTAN1	Del_9p23	0.997	1
THRAP3	Amp_7p21.1	0.997	1
TMCO4	Del_11p15.5	0.997	1
TP53	Amp_1p34.2	0.997	1
TP53	Amp_7p11.2	0.997	1
TP53	Del_16p13.3	0.997	1
TSC1	Del_9p21.3	0.997	1
19q-Amp	Amp_5p15.33	0.997	1
1q-Amp	9q-Del	0.997	1
20p-Amp	Del_16p13.3	0.997	1
20q-Amp	Amp_11q13.3	0.997	1
20q-Amp	Del_12p13.1	0.997	1
3p-Amp	Del_2q34	0.997	1
10q-Del	4p-Del	0.997	1
10q-Del	Del_2q22.1	0.997	1
10q-Del	Del_11q23.3	0.997	1
11q-Del	19p-Del	0.997	1
11q-Del	Del_18q23	0.997	1
14q-Del	18q-Del	0.997	1
14q-Del	Del_15q13.1	0.997	1
14q-Del	Del_18q23	0.997	1
15q-Del	Del_10q23.31	0.997	1
15q-Del	Del_16q23.1	0.997	1
17p-Del	Amp_3q26.33	0.997	1
17p-Del	Del_8p23.3	0.997	1
17p-Del	Del_12p13.1	0.997	1
18q-Del	Del_6q27	0.997	1
4q-Del	Del_8p23.3	0.997	1
5q-Del	Del_4q34.2	0.997	1
6q-Del	Del_11q23.3	0.997	1
8p-Del	Amp_1q21.3	0.997	1
9p-Del	Del_2q34	0.997	1
9p-Del	Del_Xp11.3	0.997	1
Amp_1q21.3	Del_17p12	0.997	1
Amp_1q23.3	Amp_6p22.3	0.997	1
Amp_1q23.3	Amp_19q13.43	0.997	1
Amp_1q23.3	Del_14q24.1	0.997	1
Amp_3p25.2	Del_1q32.1	0.997	1
Amp_3p25.2	Del_3p14.2	0.997	1
Amp_3p25.2	Del_6p25.3	0.997	1
Amp_3p25.2	Del_14q24.1	0.997	1
Amp_3q26.33	Amp_19q13.43	0.997	1
Amp_5p15.33	Amp_19q13.43	0.997	1
Amp_5p15.33	Del_16p13.3	0.997	1
Amp_6q21	Del_22q13.32	0.997	1
Amp_7p21.1	Amp_8p11.23	0.997	1
Amp_8q22.3	Amp_12q15	0.997	1
Amp_10p14	Amp_19q12	0.997	1
Amp_11q13.3	Del_Xq21.33	0.997	1
Amp_17q23.3	Amp_19q13.43	0.997	1
Amp_19q12	Del_9p23	0.997	1
Amp_19q12	Del_16p13.3	0.997	1
Amp_19q13.43	Amp_22q12.2	0.997	1
Amp_19q13.43	Del_3p14.2	0.997	1
Amp_20q11.21	Del_16p13.3	0.997	1
Amp_22q12.2	Del_8p21.3	0.997	1
Del_1p36.11	Del_3p14.2	0.997	1
Del_1p36.11	Del_5q12.1	0.997	1
Del_1q32.1	Del_12p13.1	0.997	1
Del_2q22.1	Del_12p13.1	0.997	1
Del_2q22.1	Del_16q23.1	0.997	1
Del_2q34	Del_9p23	0.997	1
Del_2q34	Del_17p12	0.997	1
Del_2q37.1	Del_12p13.1	0.997	1
Del_4q22.1	Del_13q14.2	0.997	1
Del_4q22.1	Del_16q23.1	0.997	1
Del_4q34.2	Del_19p13.3	0.997	1
Del_5q12.1	Del_18q23	0.997	1
Del_6p25.3	Del_16p13.3	0.997	1
Del_8p21.3	Del_18q23	0.997	1
Del_11q23.3	Del_12p13.1	0.997	1
Del_11q25	Del_16p13.3	0.997	1
Del_13q14.2	Del_16p13.3	0.997	1
Del_13q14.2	Del_22q13.32	0.997	1
Del_15q13.1	Del_17p12	0.997	1
Del_16q23.1	Del_22q13.32	0.997	1
Del_18q23	Del_19p13.3	0.997	1
ARID1A	NF1	0.998	1
ARID1B	Amp_20q11.21	0.998	1
ATM	TXNIP	0.998	1
ATM	Amp_1q21.3	0.998	1
ATM	Amp_8p11.21	0.998	1
BCL2L1	11q-Del	0.998	1
BCL2L1	5q-Del	0.998	1
BCL2L1	Amp_20q11.21	0.998	1
BCL2L1	Del_9p23	0.998	1
C3orf70	CREBBP	0.998	1
C3orf70	KIAA1267	0.998	1
CDKN1A	9q-Del	0.998	1
CDKN1A	Del_11q23.3	0.998	1
CSMD3	19q-Amp	0.998	1
CTNNB1	FBXW7	0.998	1
CTNNB1	Del_16q23.1	0.998	1
CUL1	EP300	0.998	1
CUL1	HLA-A	0.998	1
CUL1	PTEN	0.998	1
CUL1	16p-Del	0.998	1
DNAH6	ZFP36L1	0.998	1
EP300	8p-Del	0.998	1
ERBB2	METTL3	0.998	1
ERBB2	MLL	0.998	1
ERBB3	RXRA	0.998	1
ERBB3	Amp_22q12.2	0.998	1
ERCC2	HRAS	0.998	1
ERCC2	RAI1	0.998	1
ERCC2	Del_15q13.1	0.998	1
FAM47C	PLCXD3	0.998	1
FAM47C	Del_Xq21.33	0.998	1
FBXW7	RBM10	0.998	1
FGFR3	17p-Del	0.998	1
FOXA1	19p-Del	0.998	1
FOXQ1	Amp_3p25.2	0.998	1
GNA13	Del_4q34.2	0.998	1
GNA13	Del_19p13.3	0.998	1
KDM6A	TXNIP	0.998	1
KDM6A	Del_17p12	0.998	1
KLF5	SHANK1	0.998	1
METTL3	22q-Del	0.998	1
MLL	NF1	0.998	1
MLL2	NFE2L2	0.998	1
MLL2	Amp_1p34.2	0.998	1
MLL2	Del_4q34.2	0.998	1
MLL3	RBM10	0.998	1
NF1	7q-Amp	0.998	1
NF1	Amp_8q22.3	0.998	1
NRAS	8p-Del	0.998	1
NUDT11	18q-Del	0.998	1
PARD3	SHANK1	0.998	1
PSIP1	Amp_4p16.3	0.998	1
PTEN	Amp_3p25.2	0.998	1
RAI1	ZBTB7B	0.998	1
RHOA	Amp_8q22.3	0.998	1
RHOB	7p-Amp	0.998	1
RHOB	Del_12p13.1	0.998	1
RPTN	3p-Amp	0.998	1
RPTN	Del_8p21.3	0.998	1
RXRA	Del_8p21.3	0.998	1
THRAP3	Del_16q23.1	0.998	1
TMCO4	Del_11q23.3	0.998	1
TMCO4	Del_17p12	0.998	1
TP53	Amp_3p25.2	0.998	1
TP53	Amp_5p15.33	0.998	1
TP53	Del_19p13.3	0.998	1
ZFP36L1	6q-Del	0.998	1
19q-Amp	Amp_3q26.33	0.998	1
1q-Amp	Del_16q23.1	0.998	1
20q-Amp	Del_16p13.3	0.998	1
3p-Amp	Del_2q22.1	0.998	1
5p-Amp	10q-Del	0.998	1
5p-Amp	16p-Del	0.998	1
7p-Amp	Amp_8p11.23	0.998	1
7q-Amp	Del_Xq21.33	0.998	1
8q-Amp	Amp_3p25.2	0.998	1
8q-Amp	Amp_19q13.43	0.998	1
10q-Del	Amp_20q11.21	0.998	1
11p-Del	Del_6q27	0.998	1
11q-Del	5q-Del	0.998	1
11q-Del	Del_1q32.1	0.998	1
14q-Del	Del_4q22.1	0.998	1
14q-Del	Del_5q12.1	0.998	1
14q-Del	Del_7q36.3	0.998	1
15q-Del	Amp_1p34.2	0.998	1
15q-Del	Del_4q34.2	0.998	1
15q-Del	Del_5q12.1	0.998	1
15q-Del	Del_11p15.5	0.998	1
15q-Del	Del_14q24.1	0.998	1
15q-Del	Del_Xq21.33	0.998	1
16p-Del	Del_8p21.3	0.998	1
16p-Del	Del_13q14.2	0.998	1
17p-Del	8p-Del	0.998	1
17p-Del	Del_1p36.11	0.998	1
17p-Del	Del_4q22.1	0.998	1
17p-Del	Del_6q27	0.998	1
17p-Del	Del_8p21.3	0.998	1
17p-Del	Del_18q23	0.998	1
18q-Del	Del_5q12.1	0.998	1
18q-Del	Del_15q13.1	0.998	1
19p-Del	6q-Del	0.998	1
19p-Del	Del_10q23.31	0.998	1
22q-Del	Del_16q23.1	0.998	1
4p-Del	Del_16p13.3	0.998	1
4q-Del	9q-Del	0.998	1
4q-Del	Del_3p14.2	0.998	1
4q-Del	Del_5q12.1	0.998	1
5q-Del	Del_2q34	0.998	1
6q-Del	Del_13q14.2	0.998	1
6q-Del	Del_14q24.1	0.998	1
8p-Del	Amp_13q22.1	0.998	1
8p-Del	Del_11p15.5	0.998	1
9p-Del	Del_4q34.2	0.998	1
9q-Del	Del_Xp11.3	0.998	1
Amp_1q21.3	Amp_3q26.33	0.998	1
Amp_1q21.3	Del_11p15.5	0.998	1
Amp_1q21.3	Del_16p13.3	0.998	1
Amp_1q21.3	Del_16q23.1	0.998	1
Amp_1q23.3	Del_11p15.5	0.998	1
Amp_3p25.2	Amp_16p13.2	0.998	1
Amp_3p25.2	Del_5q12.1	0.998	1
Amp_3q26.33	Del_17p12	0.998	1
Amp_4p16.3	Del_1q32.1	0.998	1
Amp_4p16.3	Del_12p13.1	0.998	1
Amp_4q13.3	Del_16p13.3	0.998	1
Amp_7p21.1	Amp_8p11.21	0.998	1
Amp_7p21.1	Amp_20q11.21	0.998	1
Amp_7p21.1	Del_10q23.31	0.998	1
Amp_8p11.21	Del_5q12.1	0.998	1
Amp_8q22.3	Amp_22q12.2	0.998	1
Amp_8q22.3	Del_1q32.1	0.998	1
Amp_10p14	Amp_19q13.43	0.998	1
Amp_13q22.1	Amp_19q12	0.998	1
Amp_19q12	Del_15q13.1	0.998	1
Amp_19q13.43	Del_6p25.3	0.998	1
Amp_19q13.43	Del_16q23.1	0.998	1
Amp_20q11.21	Del_10q23.31	0.998	1
Amp_22q12.2	Del_2q34	0.998	1
Amp_22q12.2	Del_2q37.1	0.998	1
Del_1q32.1	Del_11q23.3	0.998	1
Del_4q22.1	Del_16p13.3	0.998	1
Del_4q34.2	Del_7q36.3	0.998	1
Del_4q34.2	Del_13q14.2	0.998	1
Del_4q34.2	Del_14q24.1	0.998	1
Del_4q34.2	Del_18q23	0.998	1
Del_4q34.2	Del_Xq21.33	0.998	1
Del_5q12.1	Del_15q13.1	0.998	1
Del_9p21.3	Del_18q23	0.998	1
Del_11q23.3	Del_16p13.3	0.998	1
Del_14q24.1	Del_18q23	0.998	1
Del_18q23	Del_22q13.32	0.998	1
ARID1B	FOXQ1	0.999	1
ARID1B	3q-Amp	0.999	1
ATM	MLL3	0.999	1
ATM	PARD3	0.999	1
BCL2L1	ZNF185	0.999	1
BCL2L1	9p-Del	0.999	1
BCL2L1	9q-Del	0.999	1
C3orf70	FBXW7	0.999	1
C3orf70	PARD3	0.999	1
C3orf70	ZBTB7B	0.999	1
C3orf70	ZNF185	0.999	1
CDKN1A	Del_9p23	0.999	1
CDKN1A	Del_11p15.5	0.999	1
CDKN2A	CNOT1	0.999	1
CDKN2A	SCARF2	0.999	1
CNNM4	ERCC2	0.999	1
CNOT1	DNAH6	0.999	1
CSMD3	PARD3	0.999	1
CSMD3	Amp_8p11.21	0.999	1
CTNNB1	Amp_17q12	0.999	1
DNAH6	1q-Amp	0.999	1
DNAH6	Del_15q13.1	0.999	1
ELF3	9q-Del	0.999	1
EP300	Del_8p23.3	0.999	1
ERBB2	GNA13	0.999	1
ERCC2	KDM6A	0.999	1
ERCC2	THRAP3	0.999	1
ERCC2	Del_6p25.3	0.999	1
ERCC2	Del_13q14.2	0.999	1
FGFR3	NUDT11	0.999	1
FGFR3	11p-Del	0.999	1
FGFR3	11q-Del	0.999	1
GNA13	SHANK1	0.999	1
HES1	SCARF2	0.999	1
HES1	TSC1	0.999	1
HLA-A	Del_Xp11.3	0.999	1
KDM6A	Del_3p14.2	0.999	1
KDM6A	Del_11q23.3	0.999	1
KIAA1267	NF1	0.999	1
KRAS	8q-Amp	0.999	1
METTL3	PIK3CA	0.999	1
METTL3	RUNX1	0.999	1
METTL3	Del_15q13.1	0.999	1
METTL3	Del_22q13.32	0.999	1
MLL	TP53	0.999	1
MLL2	7p-Amp	0.999	1
MLL2	4q-Del	0.999	1
MLL3	PSIP1	0.999	1
NFE2L2	19p-Del	0.999	1
PLCXD3	Del_5q12.1	0.999	1
PSIP1	9p-Del	0.999	1
PSIP1	Del_9p23	0.999	1
RBM10	RXRA	0.999	1
RHOB	Amp_1q23.3	0.999	1
RHOB	Amp_7p11.2	0.999	1
RPTN	Amp_17q12	0.999	1
RUNX1	Amp_6p22.3	0.999	1
SF1	Amp_19q13.43	0.999	1
SPTAN1	Del_9p21.3	0.999	1
THRAP3	TXNIP	0.999	1
TMCO4	UNC93B1	0.999	1
TMCO4	10q-Del	0.999	1
TMCO4	11p-Del	0.999	1
TMCO4	17p-Del	0.999	1
TMCO4	Del_5q12.1	0.999	1
ZFP36L1	Del_6q27	0.999	1
17q-Amp	Amp_19q12	0.999	1
19q-Amp	Amp_10p14	0.999	1
19q-Amp	Del_19p13.3	0.999	1
1q-Amp	Amp_4q13.3	0.999	1
20p-Amp	17p-Del	0.999	1
20p-Amp	Del_17p12	0.999	1
20q-Amp	8q-Amp	0.999	1
20q-Amp	9q-Del	0.999	1
20q-Amp	Del_10q23.31	0.999	1
3p-Amp	Del_6p25.3	0.999	1
8q-Amp	Del_3p14.2	0.999	1
8q-Amp	Del_6p25.3	0.999	1
10q-Del	11p-Del	0.999	1
11p-Del	Amp_11q13.3	0.999	1
11p-Del	Del_2q37.1	0.999	1
11p-Del	Del_19p13.3	0.999	1
11p-Del	Del_Xq21.33	0.999	1
11q-Del	14q-Del	0.999	1
11q-Del	Amp_4p16.3	0.999	1
11q-Del	Amp_11q13.3	0.999	1
14q-Del	6q-Del	0.999	1
14q-Del	9p-Del	0.999	1
14q-Del	Del_10q23.31	0.999	1
14q-Del	Del_19p13.3	0.999	1
15q-Del	Amp_19q12	0.999	1
15q-Del	Del_8p21.3	0.999	1
16p-Del	4p-Del	0.999	1
16p-Del	Del_6q27	0.999	1
17p-Del	18q-Del	0.999	1
17p-Del	22q-Del	0.999	1
17p-Del	Del_2q37.1	0.999	1
17p-Del	Del_10q23.31	0.999	1
17p-Del	Del_11q25	0.999	1
18q-Del	Del_6p25.3	0.999	1
18q-Del	Del_9p21.3	0.999	1
18q-Del	Del_19p13.3	0.999	1
19p-Del	Del_3p14.2	0.999	1
19p-Del	Del_6q27	0.999	1
19p-Del	Del_8p21.3	0.999	1
22q-Del	4p-Del	0.999	1
22q-Del	8p-Del	0.999	1
22q-Del	Amp_20q11.21	0.999	1
22q-Del	Del_3p14.2	0.999	1
22q-Del	Del_18q23	0.999	1
4p-Del	9p-Del	0.999	1
4p-Del	Del_8p21.3	0.999	1
4p-Del	Del_18q23	0.999	1
4p-Del	Del_22q13.32	0.999	1
4q-Del	Del_1p36.11	0.999	1
4q-Del	Del_15q13.1	0.999	1
4q-Del	Del_18q23	0.999	1
5q-Del	Amp_5p15.33	0.999	1
5q-Del	Del_10q23.31	0.999	1
6q-Del	9p-Del	0.999	1
6q-Del	Del_16q23.1	0.999	1
6q-Del	Del_18q23	0.999	1
8p-Del	Amp_6p22.3	0.999	1
8p-Del	Amp_19q13.43	0.999	1
8p-Del	Del_4q34.2	0.999	1
8p-Del	Del_10q23.31	0.999	1
8p-Del	Del_14q24.1	0.999	1
8p-Del	Del_17p12	0.999	1
9p-Del	Del_1p36.11	0.999	1
9p-Del	Del_14q24.1	0.999	1
9p-Del	Del_18q23	0.999	1
9q-Del	Amp_20q11.21	0.999	1
9q-Del	Del_18q23	0.999	1
Amp_1p34.2	Amp_6q21	0.999	1
Amp_1q21.3	Del_13q14.2	0.999	1
Amp_1q21.3	Del_15q13.1	0.999	1
Amp_1q23.3	Del_1q32.1	0.999	1
Amp_3p25.2	Amp_4q13.3	0.999	1
Amp_3p25.2	Amp_6q21	0.999	1
Amp_3p25.2	Amp_17q12	0.999	1
Amp_3p25.2	Del_4q34.2	0.999	1
Amp_3p25.2	Del_16q23.1	0.999	1
Amp_3p25.2	Del_22q13.32	0.999	1
Amp_3q26.33	Amp_10p14	0.999	1
Amp_3q26.33	Amp_19q12	0.999	1
Amp_4p16.3	Del_11q23.3	0.999	1
Amp_4p16.3	Del_14q24.1	0.999	1
Amp_4q13.3	Del_13q14.2	0.999	1
Amp_5p15.33	Amp_7p11.2	0.999	1
Amp_5p15.33	Amp_16p13.2	0.999	1
Amp_5p15.33	Del_8p21.3	0.999	1
Amp_6p22.3	Amp_7p11.2	0.999	1
Amp_6p22.3	Amp_22q12.2	0.999	1
Amp_7p21.1	Amp_22q12.2	0.999	1
Amp_8p11.21	Amp_13q22.1	0.999	1
Amp_8q22.3	Del_6p25.3	0.999	1
Amp_8q22.3	Del_15q13.1	0.999	1
Amp_8q22.3	Del_16p13.3	0.999	1
Amp_10p14	Del_10q23.31	0.999	1
Amp_11q13.3	Del_9p23	0.999	1
Amp_12q15	Amp_22q12.2	0.999	1
Amp_13q22.1	Del_8p21.3	0.999	1
Amp_16p13.2	Del_6p25.3	0.999	1
Amp_16p13.2	Del_8p23.3	0.999	1
Amp_17q12	Del_17p12	0.999	1
Amp_17q23.3	Del_3p14.2	0.999	1
Amp_19q12	Del_8p23.3	0.999	1
Amp_19q12	Del_11p15.5	0.999	1
Amp_19q13.43	Amp_20q11.21	0.999	1
Amp_19q13.43	Del_15q13.1	0.999	1
Amp_20q11.21	Del_5q12.1	0.999	1
Amp_20q11.21	Del_12p13.1	0.999	1
Amp_22q12.2	Del_6p25.3	0.999	1
Amp_22q12.2	Del_6q27	0.999	1
Amp_22q12.2	Del_16q23.1	0.999	1
Del_1p36.11	Del_4q22.1	0.999	1
Del_1q32.1	Del_3p14.2	0.999	1
Del_2q22.1	Del_6p25.3	0.999	1
Del_2q22.1	Del_16p13.3	0.999	1
Del_2q22.1	Del_Xq21.33	0.999	1
Del_2q34	Del_3p14.2	0.999	1
Del_2q34	Del_4q22.1	0.999	1
Del_2q34	Del_7q36.3	0.999	1
Del_2q37.1	Del_4q22.1	0.999	1
Del_2q37.1	Del_11q23.3	0.999	1
Del_2q37.1	Del_15q13.1	0.999	1
Del_2q37.1	Del_18q23	0.999	1
Del_3p14.2	Del_9p21.3	0.999	1
Del_3p14.2	Del_11q25	0.999	1
Del_3p14.2	Del_13q14.2	0.999	1
Del_3p14.2	Del_18q23	0.999	1
Del_4q22.1	Del_17p12	0.999	1
Del_4q34.2	Del_11p15.5	0.999	1
Del_4q34.2	Del_16p13.3	0.999	1
Del_4q34.2	Del_16q23.1	0.999	1
Del_6p25.3	Del_12p13.1	0.999	1
Del_6p25.3	Del_22q13.32	0.999	1
Del_6q27	Del_11q23.3	0.999	1
Del_6q27	Del_11q25	0.999	1
Del_10q23.31	Del_17p12	0.999	1
Del_11p15.5	Del_15q13.1	0.999	1
Del_11p15.5	Del_19p13.3	0.999	1
Del_13q14.2	Del_15q13.1	0.999	1
Del_13q14.2	Del_18q23	0.999	1
Del_14q24.1	Del_19p13.3	0.999	1
Del_15q13.1	Del_18q23	0.999	1
Del_15q13.1	Del_19p13.3	0.999	1
Del_17p12	Del_18q23	0.999	1
ARID1A	CNNM4	1	1
ARID1B	PKHD1	1	1
ATM	CSMD3	1	1
BCL2L1	20p-Amp	1	1
BCL2L1	20q-Amp	1	1
BCL2L1	7p-Amp	1	1
BCL2L1	7q-Amp	1	1
BCL2L1	Amp_7p21.1	1	1
BCL2L1	Amp_7p11.2	1	1
C3orf70	ERBB2	1	1
C3orf70	GNA13	1	1
CDKN1A	11p-Del	1	1
CNNM4	Del_1q32.1	1	1
CTNNB1	17q-Amp	1	1
CTNNB1	7q-Amp	1	1
DNAH6	IDH1	1	1
ERCC2	Amp_3p25.2	1	1
ERCC2	Del_16q23.1	1	1
FAT1	MLL2	1	1
FGFR3	KDM6A	1	1
FGFR3	STAG2	1	1
FGFR3	9p-Del	1	1
FGFR3	9q-Del	1	1
FGFR3	Del_9p23	1	1
FGFR3	Del_9p21.3	1	1
FGFR3	Del_11q23.3	1	1
FOXQ1	17q-Amp	1	1
GNA13	TSC1	1	1
HES1	Del_6p25.3	1	1
KDM6A	STAG2	1	1
MBD1	ZFP36L1	1	1
METTL3	16p-Del	1	1
MLL	THRAP3	1	1
MLL2	MLL3	1	1
MLL3	RPTN	1	1
NF1	PSIP1	1	1
NF1	RAI1	1	1
NF1	THRAP3	1	1
NFE2L2	Del_9p21.3	1	1
PARD3	SCARF2	1	1
PKHD1	ZFP36L1	1	1
PLCXD3	5p-Amp	1	1
PLCXD3	Amp_5p15.33	1	1
PSIP1	TMCO4	1	1
PSIP1	9q-Del	1	1
RB1	TP53	1	1
RB1	5p-Amp	1	1
RB1	10q-Del	1	1
RB1	Amp_5p15.33	1	1
RB1	Amp_16p13.2	1	1
RB1	Del_10q23.31	1	1
RB1	Del_13q14.2	1	1
RB1	Del_16p13.3	1	1
RPTN	Amp_13q22.1	1	1
RUNX1	SF1	1	1
RUNX1	Amp_1q21.3	1	1
SHANK1	THRAP3	1	1
SHANK1	Del_6p25.3	1	1
SPTAN1	TSC1	1	1
STAG2	TMCO4	1	1
TMCO4	8p-Del	1	1
TMCO4	Amp_11q13.3	1	1
TMCO4	Del_14q24.1	1	1
TP53	UNC93B1	1	1
TP53	5p-Amp	1	1
TP53	Amp_6p22.3	1	1
TP53	Amp_10p14	1	1
TP53	Amp_16p13.2	1	1
TP53	Del_4q22.1	1	1
TP53	Del_4q34.2	1	1
17q-Amp	Amp_17q12	1	1
17q-Amp	Amp_17q23.3	1	1
17q-Amp	Amp_19q13.43	1	1
17q-Amp	Amp_22q12.2	1	1
19q-Amp	Amp_19q12	1	1
19q-Amp	Amp_19q13.43	1	1
1q-Amp	Amp_1q21.3	1	1
1q-Amp	Amp_1q23.3	1	1
20p-Amp	20q-Amp	1	1
20p-Amp	10q-Del	1	1
20p-Amp	Amp_20q11.21	1	1
20q-Amp	7p-Amp	1	1
20q-Amp	10q-Del	1	1
20q-Amp	17p-Del	1	1
20q-Amp	Amp_20q11.21	1	1
20q-Amp	Del_17p12	1	1
3p-Amp	3q-Amp	1	1
3p-Amp	Amp_3p25.2	1	1
3p-Amp	Amp_3q26.33	1	1
3q-Amp	Amp_3q26.33	1	1
3q-Amp	Del_6p25.3	1	1
5p-Amp	Amp_5p15.33	1	1
7p-Amp	7q-Amp	1	1
7p-Amp	Amp_7p21.1	1	1
7p-Amp	Amp_7p11.2	1	1
7p-Amp	Amp_20q11.21	1	1
7q-Amp	Amp_7p21.1	1	1
7q-Amp	Amp_7p11.2	1	1
7q-Amp	Amp_20q11.21	1	1
8q-Amp	Amp_8p11.23	1	1
8q-Amp	Amp_8p11.21	1	1
8q-Amp	Amp_8q22.3	1	1
10q-Del	11q-Del	1	1
10q-Del	15q-Del	1	1
10q-Del	16p-Del	1	1
10q-Del	18q-Del	1	1
10q-Del	19p-Del	1	1
10q-Del	22q-Del	1	1
10q-Del	5q-Del	1	1
10q-Del	6q-Del	1	1
10q-Del	8p-Del	1	1
10q-Del	Amp_5p15.33	1	1
10q-Del	Del_2q34	1	1
10q-Del	Del_2q37.1	1	1
10q-Del	Del_6q27	1	1
10q-Del	Del_8p23.3	1	1
10q-Del	Del_8p21.3	1	1
10q-Del	Del_10q23.31	1	1
10q-Del	Del_13q14.2	1	1
10q-Del	Del_15q13.1	1	1
10q-Del	Del_16p13.3	1	1
10q-Del	Del_16q23.1	1	1
10q-Del	Del_22q13.32	1	1
11p-Del	11q-Del	1	1
11p-Del	14q-Del	1	1
11p-Del	17p-Del	1	1
11p-Del	18q-Del	1	1
11p-Del	4p-Del	1	1
11p-Del	5q-Del	1	1
11p-Del	6q-Del	1	1
11p-Del	9p-Del	1	1
11p-Del	9q-Del	1	1
11p-Del	Amp_4p16.3	1	1
11p-Del	Del_3p14.2	1	1
11p-Del	Del_5q12.1	1	1
11p-Del	Del_9p23	1	1
11p-Del	Del_9p21.3	1	1
11p-Del	Del_11p15.5	1	1
11p-Del	Del_11q23.3	1	1
11p-Del	Del_11q25	1	1
11p-Del	Del_14q24.1	1	1
11p-Del	Del_17p12	1	1
11p-Del	Del_18q23	1	1
11q-Del	17p-Del	1	1
11q-Del	18q-Del	1	1
11q-Del	6q-Del	1	1
11q-Del	9p-Del	1	1
11q-Del	9q-Del	1	1
11q-Del	Del_2q37.1	1	1
11q-Del	Del_3p14.2	1	1
11q-Del	Del_9p23	1	1
11q-Del	Del_9p21.3	1	1
11q-Del	Del_11p15.5	1	1
11q-Del	Del_11q23.3	1	1
11q-Del	Del_11q25	1	1
11q-Del	Del_17p12	1	1
14q-Del	15q-Del	1	1
14q-Del	17p-Del	1	1
14q-Del	22q-Del	1	1
14q-Del	4p-Del	1	1
14q-Del	4q-Del	1	1
14q-Del	5q-Del	1	1
14q-Del	8p-Del	1	1
14q-Del	Amp_4p16.3	1	1
14q-Del	Del_2q37.1	1	1
14q-Del	Del_4q34.2	1	1
14q-Del	Del_6q27	1	1
14q-Del	Del_8p23.3	1	1
14q-Del	Del_8p21.3	1	1
14q-Del	Del_11p15.5	1	1
14q-Del	Del_14q24.1	1	1
14q-Del	Del_17p12	1	1
14q-Del	Del_22q13.32	1	1
15q-Del	16p-Del	1	1
15q-Del	17p-Del	1	1
15q-Del	18q-Del	1	1
15q-Del	22q-Del	1	1
15q-Del	4p-Del	1	1
15q-Del	4q-Del	1	1
15q-Del	5q-Del	1	1
15q-Del	6q-Del	1	1
15q-Del	8p-Del	1	1
15q-Del	Del_3p14.2	1	1
15q-Del	Del_8p23.3	1	1
15q-Del	Del_15q13.1	1	1
15q-Del	Del_16p13.3	1	1
15q-Del	Del_22q13.32	1	1
16p-Del	18q-Del	1	1
16p-Del	22q-Del	1	1
16p-Del	5q-Del	1	1
16p-Del	6q-Del	1	1
16p-Del	8p-Del	1	1
16p-Del	Del_2q22.1	1	1
16p-Del	Del_2q34	1	1
16p-Del	Del_2q37.1	1	1
16p-Del	Del_8p23.3	1	1
16p-Del	Del_10q23.31	1	1
16p-Del	Del_16p13.3	1	1
16p-Del	Del_16q23.1	1	1
16p-Del	Del_22q13.32	1	1
17p-Del	4p-Del	1	1
17p-Del	4q-Del	1	1
17p-Del	5q-Del	1	1
17p-Del	6q-Del	1	1
17p-Del	9p-Del	1	1
17p-Del	9q-Del	1	1
17p-Del	Amp_20q11.21	1	1
17p-Del	Del_3p14.2	1	1
17p-Del	Del_4q34.2	1	1
17p-Del	Del_5q12.1	1	1
17p-Del	Del_9p23	1	1
17p-Del	Del_9p21.3	1	1
17p-Del	Del_11p15.5	1	1
17p-Del	Del_11q23.3	1	1
17p-Del	Del_14q24.1	1	1
17p-Del	Del_17p12	1	1
17p-Del	Del_19p13.3	1	1
18q-Del	22q-Del	1	1
18q-Del	4p-Del	1	1
18q-Del	4q-Del	1	1
18q-Del	5q-Del	1	1
18q-Del	6q-Del	1	1
18q-Del	8p-Del	1	1
18q-Del	9p-Del	1	1
18q-Del	9q-Del	1	1
18q-Del	Del_2q37.1	1	1
18q-Del	Del_9p23	1	1
18q-Del	Del_11p15.5	1	1
18q-Del	Del_18q23	1	1
18q-Del	Del_22q13.32	1	1
19p-Del	5q-Del	1	1
19p-Del	8p-Del	1	1
19p-Del	Del_19p13.3	1	1
19p-Del	Del_22q13.32	1	1
22q-Del	5q-Del	1	1
22q-Del	6q-Del	1	1
22q-Del	Del_2q22.1	1	1
22q-Del	Del_2q34	1	1
22q-Del	Del_2q37.1	1	1
22q-Del	Del_5q12.1	1	1
22q-Del	Del_6q27	1	1
22q-Del	Del_8p23.3	1	1
22q-Del	Del_8p21.3	1	1
22q-Del	Del_10q23.31	1	1
22q-Del	Del_13q14.2	1	1
22q-Del	Del_14q24.1	1	1
22q-Del	Del_15q13.1	1	1
22q-Del	Del_16p13.3	1	1
22q-Del	Del_17p12	1	1
22q-Del	Del_19p13.3	1	1
22q-Del	Del_22q13.32	1	1
4p-Del	4q-Del	1	1
4p-Del	5q-Del	1	1
4p-Del	6q-Del	1	1
4p-Del	8p-Del	1	1
4p-Del	Del_4q22.1	1	1
4p-Del	Del_4q34.2	1	1
4p-Del	Del_5q12.1	1	1
4p-Del	Del_6q27	1	1
4p-Del	Del_8p23.3	1	1
4p-Del	Del_13q14.2	1	1
4p-Del	Del_17p12	1	1
4q-Del	5q-Del	1	1
4q-Del	6q-Del	1	1
4q-Del	8p-Del	1	1
4q-Del	9p-Del	1	1
4q-Del	Del_4q22.1	1	1
4q-Del	Del_4q34.2	1	1
4q-Del	Del_17p12	1	1
5q-Del	6q-Del	1	1
5q-Del	8p-Del	1	1
5q-Del	9p-Del	1	1
5q-Del	9q-Del	1	1
5q-Del	Amp_8p11.23	1	1
5q-Del	Del_3p14.2	1	1
5q-Del	Del_5q12.1	1	1
5q-Del	Del_6q27	1	1
5q-Del	Del_8p23.3	1	1
5q-Del	Del_8p21.3	1	1
5q-Del	Del_9p23	1	1
5q-Del	Del_11p15.5	1	1
5q-Del	Del_14q24.1	1	1
5q-Del	Del_15q13.1	1	1
5q-Del	Del_17p12	1	1
5q-Del	Del_18q23	1	1
5q-Del	Del_19p13.3	1	1
5q-Del	Del_22q13.32	1	1
6q-Del	8p-Del	1	1
6q-Del	Del_2q34	1	1
6q-Del	Del_2q37.1	1	1
6q-Del	Del_3p14.2	1	1
6q-Del	Del_4q22.1	1	1
6q-Del	Del_4q34.2	1	1
6q-Del	Del_5q12.1	1	1
6q-Del	Del_6p25.3	1	1
6q-Del	Del_6q27	1	1
6q-Del	Del_8p23.3	1	1
6q-Del	Del_8p21.3	1	1
6q-Del	Del_11q25	1	1
6q-Del	Del_15q13.1	1	1
6q-Del	Del_16p13.3	1	1
6q-Del	Del_17p12	1	1
6q-Del	Del_19p13.3	1	1
6q-Del	Del_22q13.32	1	1
8p-Del	Amp_5p15.33	1	1
8p-Del	Del_2q34	1	1
8p-Del	Del_2q37.1	1	1
8p-Del	Del_5q12.1	1	1
8p-Del	Del_6q27	1	1
8p-Del	Del_7q36.3	1	1
8p-Del	Del_8p23.3	1	1
8p-Del	Del_8p21.3	1	1
8p-Del	Del_15q13.1	1	1
8p-Del	Del_16p13.3	1	1
8p-Del	Del_19p13.3	1	1
8p-Del	Del_22q13.32	1	1
9p-Del	9q-Del	1	1
9p-Del	Amp_4p16.3	1	1
9p-Del	Del_2q37.1	1	1
9p-Del	Del_3p14.2	1	1
9p-Del	Del_5q12.1	1	1
9p-Del	Del_9p23	1	1
9p-Del	Del_9p21.3	1	1
9p-Del	Del_11p15.5	1	1
9p-Del	Del_11q23.3	1	1
9p-Del	Del_11q25	1	1
9p-Del	Del_17p12	1	1
9q-Del	Amp_4p16.3	1	1
9q-Del	Del_2q37.1	1	1
9q-Del	Del_5q12.1	1	1
9q-Del	Del_9p23	1	1
9q-Del	Del_9p21.3	1	1
9q-Del	Del_11p15.5	1	1
9q-Del	Del_11q23.3	1	1
9q-Del	Del_11q25	1	1
9q-Del	Del_17p12	1	1
Amp_1p34.2	Amp_4q13.3	1	1
Amp_1q21.3	Amp_1q23.3	1	1
Amp_1q21.3	Amp_3p25.2	1	1
Amp_1q21.3	Amp_16p13.2	1	1
Amp_1q21.3	Amp_19q12	1	1
Amp_1q21.3	Del_8p23.3	1	1
Amp_1q21.3	Del_8p21.3	1	1
Amp_1q21.3	Del_10q23.31	1	1
Amp_1q23.3	Amp_3p25.2	1	1
Amp_1q23.3	Amp_8q22.3	1	1
Amp_1q23.3	Amp_19q12	1	1
Amp_1q23.3	Amp_20q11.21	1	1
Amp_1q23.3	Amp_22q12.2	1	1
Amp_1q23.3	Del_8p23.3	1	1
Amp_3p25.2	Amp_6p22.3	1	1
Amp_3p25.2	Amp_7p21.1	1	1
Amp_3p25.2	Amp_8p11.21	1	1
Amp_3p25.2	Amp_8q22.3	1	1
Amp_3p25.2	Amp_19q12	1	1
Amp_3p25.2	Amp_22q12.2	1	1
Amp_3p25.2	Del_17p12	1	1
Amp_3q26.33	Del_3p14.2	1	1
Amp_3q26.33	Del_6p25.3	1	1
Amp_3q26.33	Del_19p13.3	1	1
Amp_4p16.3	Del_9p23	1	1
Amp_4p16.3	Del_9p21.3	1	1
Amp_4p16.3	Del_11p15.5	1	1
Amp_4p16.3	Del_17p12	1	1
Amp_5p15.33	Del_5q12.1	1	1
Amp_5p15.33	Del_8p23.3	1	1
Amp_5p15.33	Del_16q23.1	1	1
Amp_6p22.3	Amp_7p21.1	1	1
Amp_6p22.3	Amp_8p11.21	1	1
Amp_6p22.3	Amp_8q22.3	1	1
Amp_6p22.3	Amp_10p14	1	1
Amp_6p22.3	Amp_19q12	1	1
Amp_6p22.3	Amp_19q13.43	1	1
Amp_6p22.3	Del_6p25.3	1	1
Amp_6p22.3	Del_8p23.3	1	1
Amp_6p22.3	Del_8p21.3	1	1
Amp_6p22.3	Del_13q14.2	1	1
Amp_7p21.1	Amp_7p11.2	1	1
Amp_7p21.1	Amp_8q22.3	1	1
Amp_7p21.1	Amp_19q12	1	1
Amp_8p11.23	Amp_8p11.21	1	1
Amp_8p11.23	Amp_8q22.3	1	1
Amp_8p11.23	Del_5q12.1	1	1
Amp_8p11.23	Del_8p21.3	1	1
Amp_8p11.21	Amp_8q22.3	1	1
Amp_8p11.21	Amp_19q12	1	1
Amp_8p11.21	Amp_19q13.43	1	1
Amp_8p11.21	Amp_22q12.2	1	1
Amp_8p11.21	Del_8p23.3	1	1
Amp_8p11.21	Del_8p21.3	1	1
Amp_8q22.3	Amp_10p14	1	1
Amp_8q22.3	Amp_19q12	1	1
Amp_8q22.3	Amp_19q13.43	1	1
Amp_8q22.3	Del_7q36.3	1	1
Amp_8q22.3	Del_8p23.3	1	1
Amp_8q22.3	Del_8p21.3	1	1
Amp_10p14	Amp_16p13.2	1	1
Amp_11q13.3	Amp_11q22.2	1	1
Amp_11q13.3	Del_11q23.3	1	1
Amp_11q13.3	Del_11q25	1	1
Amp_13q22.1	Del_8p23.3	1	1
Amp_16p13.2	Del_10q23.31	1	1
Amp_16p13.2	Del_16p13.3	1	1
Amp_17q12	Amp_17q23.3	1	1
Amp_19q12	Amp_19q13.43	1	1
Amp_19q12	Amp_22q12.2	1	1
Amp_19q12	Del_8p21.3	1	1
Amp_19q12	Del_14q24.1	1	1
Amp_20q11.21	Del_17p12	1	1
Amp_22q12.2	Del_8p23.3	1	1
Amp_22q12.2	Del_14q24.1	1	1
Amp_22q12.2	Del_16p13.3	1	1
Amp_22q12.2	Del_22q13.32	1	1
Del_1p36.11	Del_9p21.3	1	1
Del_2q22.1	Del_2q34	1	1
Del_2q22.1	Del_2q37.1	1	1
Del_2q22.1	Del_10q23.31	1	1
Del_2q34	Del_2q37.1	1	1
Del_2q34	Del_4q34.2	1	1
Del_2q34	Del_5q12.1	1	1
Del_2q34	Del_6p25.3	1	1
Del_2q34	Del_6q27	1	1
Del_2q34	Del_8p23.3	1	1
Del_2q34	Del_8p21.3	1	1
Del_2q34	Del_10q23.31	1	1
Del_2q34	Del_11p15.5	1	1
Del_2q34	Del_13q14.2	1	1
Del_2q34	Del_16p13.3	1	1
Del_2q34	Del_16q23.1	1	1
Del_2q37.1	Del_3p14.2	1	1
Del_2q37.1	Del_4q34.2	1	1
Del_2q37.1	Del_5q12.1	1	1
Del_2q37.1	Del_6p25.3	1	1
Del_2q37.1	Del_6q27	1	1
Del_2q37.1	Del_7q36.3	1	1
Del_2q37.1	Del_8p23.3	1	1
Del_2q37.1	Del_8p21.3	1	1
Del_2q37.1	Del_9p23	1	1
Del_2q37.1	Del_10q23.31	1	1
Del_2q37.1	Del_11p15.5	1	1
Del_2q37.1	Del_13q14.2	1	1
Del_2q37.1	Del_14q24.1	1	1
Del_2q37.1	Del_16p13.3	1	1
Del_2q37.1	Del_16q23.1	1	1
Del_2q37.1	Del_17p12	1	1
Del_2q37.1	Del_22q13.32	1	1
Del_3p14.2	Del_4q22.1	1	1
Del_3p14.2	Del_4q34.2	1	1
Del_3p14.2	Del_5q12.1	1	1
Del_3p14.2	Del_6q27	1	1
Del_3p14.2	Del_8p21.3	1	1
Del_3p14.2	Del_9p23	1	1
Del_3p14.2	Del_11p15.5	1	1
Del_3p14.2	Del_11q23.3	1	1
Del_3p14.2	Del_15q13.1	1	1
Del_3p14.2	Del_17p12	1	1
Del_3p14.2	Del_19p13.3	1	1
Del_3p14.2	Del_22q13.32	1	1
Del_4q22.1	Del_4q34.2	1	1
Del_4q22.1	Del_5q12.1	1	1
Del_4q22.1	Del_7q36.3	1	1
Del_4q34.2	Del_5q12.1	1	1
Del_4q34.2	Del_6q27	1	1
Del_4q34.2	Del_8p23.3	1	1
Del_4q34.2	Del_8p21.3	1	1
Del_4q34.2	Del_10q23.31	1	1
Del_4q34.2	Del_15q13.1	1	1
Del_4q34.2	Del_17p12	1	1
Del_5q12.1	Del_6q27	1	1
Del_5q12.1	Del_8p23.3	1	1
Del_5q12.1	Del_8p21.3	1	1
Del_5q12.1	Del_9p23	1	1
Del_5q12.1	Del_10q23.31	1	1
Del_5q12.1	Del_11p15.5	1	1
Del_5q12.1	Del_14q24.1	1	1
Del_5q12.1	Del_16p13.3	1	1
Del_5q12.1	Del_17p12	1	1
Del_5q12.1	Del_19p13.3	1	1
Del_5q12.1	Del_22q13.32	1	1
Del_6p25.3	Del_6q27	1	1
Del_6p25.3	Del_14q24.1	1	1
Del_6p25.3	Del_16q23.1	1	1
Del_6p25.3	Del_18q23	1	1
Del_6q27	Del_8p23.3	1	1
Del_6q27	Del_8p21.3	1	1
Del_6q27	Del_10q23.31	1	1
Del_6q27	Del_11p15.5	1	1
Del_6q27	Del_13q14.2	1	1
Del_6q27	Del_14q24.1	1	1
Del_6q27	Del_15q13.1	1	1
Del_6q27	Del_16p13.3	1	1
Del_6q27	Del_16q23.1	1	1
Del_6q27	Del_17p12	1	1
Del_6q27	Del_19p13.3	1	1
Del_6q27	Del_22q13.32	1	1
Del_7q36.3	Del_8p23.3	1	1
Del_7q36.3	Del_8p21.3	1	1
Del_8p23.3	Del_8p21.3	1	1
Del_8p23.3	Del_10q23.31	1	1
Del_8p23.3	Del_11p15.5	1	1
Del_8p23.3	Del_14q24.1	1	1
Del_8p23.3	Del_15q13.1	1	1
Del_8p23.3	Del_16p13.3	1	1
Del_8p23.3	Del_17p12	1	1
Del_8p23.3	Del_19p13.3	1	1
Del_8p23.3	Del_22q13.32	1	1
Del_8p21.3	Del_10q23.31	1	1
Del_8p21.3	Del_11p15.5	1	1
Del_8p21.3	Del_14q24.1	1	1
Del_8p21.3	Del_15q13.1	1	1
Del_8p21.3	Del_16p13.3	1	1
Del_8p21.3	Del_17p12	1	1
Del_8p21.3	Del_19p13.3	1	1
Del_8p21.3	Del_22q13.32	1	1
Del_9p23	Del_9p21.3	1	1
Del_9p23	Del_11p15.5	1	1
Del_9p23	Del_11q23.3	1	1
Del_9p23	Del_11q25	1	1
Del_9p23	Del_17p12	1	1
Del_9p23	Del_18q23	1	1
Del_9p21.3	Del_11p15.5	1	1
Del_9p21.3	Del_11q23.3	1	1
Del_9p21.3	Del_11q25	1	1
Del_9p21.3	Del_17p12	1	1
Del_10q23.31	Del_13q14.2	1	1
Del_10q23.31	Del_14q24.1	1	1
Del_10q23.31	Del_15q13.1	1	1
Del_10q23.31	Del_16p13.3	1	1
Del_10q23.31	Del_16q23.1	1	1
Del_10q23.31	Del_18q23	1	1
Del_10q23.31	Del_22q13.32	1	1
Del_11p15.5	Del_11q23.3	1	1
Del_11p15.5	Del_11q25	1	1
Del_11p15.5	Del_14q24.1	1	1
Del_11p15.5	Del_17p12	1	1
Del_11p15.5	Del_18q23	1	1
Del_11p15.5	Del_Xq21.33	1	1
Del_11q23.3	Del_11q25	1	1
Del_11q23.3	Del_17p12	1	1
Del_11q25	Del_17p12	1	1
Del_12p13.1	Del_17p12	1	1
Del_13q14.2	Del_16q23.1	1	1
Del_14q24.1	Del_15q13.1	1	1
Del_14q24.1	Del_16p13.3	1	1
Del_14q24.1	Del_17p12	1	1
Del_14q24.1	Del_22q13.32	1	1
Del_15q13.1	Del_16p13.3	1	1
Del_15q13.1	Del_16q23.1	1	1
Del_15q13.1	Del_22q13.32	1	1
Del_16p13.3	Del_16q23.1	1	1
Del_16p13.3	Del_17p12	1	1
Del_16p13.3	Del_22q13.32	1	1
Del_17p12	Del_19p13.3	1	1
Del_19p13.3	Del_22q13.32	1	1
TP53	Del_9p21.3	1.18e-05	1
RB1	9q-Del	1.4e-05	1
TP53	Amp_12q15	1.6e-11	1
RB1	9p-Del	2.23e-07	1
RB1	Del_9p21.3	3.07e-16	1
FGFR3	TP53	4.37e-05	1
TP53	9q-Del	7.03e-05	1
Amp_6p22.3	Del_9p21.3	7.94e-05	1
RB1	Del_9p23	8.5e-07	1
