gene1	gene2	pval	qval
14q-Del	Del_8p23.3	0.000105	1
Del_2q34	Del_8p21.3	0.000105	1
Del_2q37.1	Del_3p14.2	0.000109	1
Del_10q23.31	Del_22q13.32	0.000109	1
18q-Del	4q-Del	0.000112	1
10q-Del	Del_16p13.3	0.000113	1
6q-Del	Del_16p13.3	0.000113	1
11p-Del	Del_3p14.2	0.000116	1
6q-Del	Del_2q37.1	0.000121	1
10q-Del	Del_8p23.3	0.000122	1
6q-Del	Del_8p23.3	0.000122	1
Amp_8p11.23	Del_5q12.1	0.000122	1
11p-Del	Amp_4p16.3	0.000123	1
8q-Amp	Amp_8p11.23	0.000124	1
ARID1B	PKHD1	0.000131	1
Amp_22q12.2	Del_8p23.3	0.000131	1
Amp_1q21.3	Del_8p21.3	0.00014	1
Del_2q37.1	Del_6p25.3	0.000142	1
GNA13	TSC1	0.000146	1
17p-Del	Del_5q12.1	0.000146	1
Del_10q23.31	Del_16q23.1	0.00015	1
14q-Del	Del_22q13.32	0.000151	1
Amp_4p16.3	Del_11p15.5	0.000151	1
14q-Del	Del_8p21.3	0.000155	1
Amp_6p22.3	Del_13q14.2	0.000158	1
Del_2q37.1	Del_9p23	0.000158	1
8p-Del	Del_15q13.1	0.000161	1
Del_8p23.3	Del_19p13.3	0.000167	1
5q-Del	Del_14q24.1	0.000173	1
RB1	Amp_5p15.33	0.000176	1
Amp_22q12.2	Del_16p13.3	0.00018	1
TP53	Del_4q22.1	0.000181	1
Amp_8p11.21	Amp_19q12	0.000182	1
3q-Amp	Del_6p25.3	0.000183	1
5q-Del	Del_3p14.2	0.000185	1
Del_6p25.3	Del_16q23.1	0.000186	1
Del_8p23.3	Del_17p12	0.000186	1
Del_16p13.3	Del_17p12	0.000186	1
14q-Del	5q-Del	0.000191	1
11p-Del	Del_14q24.1	0.000194	1
17p-Del	Del_14q24.1	0.000194	1
Amp_13q22.1	Del_8p23.3	0.000199	1
17p-Del	5q-Del	0.000203	1
17p-Del	Del_19p13.3	0.000203	1
10q-Del	Del_2q34	0.000204	1
6q-Del	Del_2q34	0.000204	1
20q-Amp	Del_17p12	0.000207	1
RB1	Amp_16p13.2	0.000215	1
9p-Del	Del_3p14.2	0.000221	1
Amp_6p22.3	Amp_7p21.1	0.000221	1
16p-Del	22q-Del	0.000227	1
Del_2q34	Del_6q27	0.000232	1
Del_2q37.1	Del_13q14.2	0.000234	1
NF1	THRAP3	0.000237	1
16p-Del	6q-Del	0.000238	1
Amp_5p15.33	Del_16q23.1	0.00024	1
Amp_22q12.2	Del_14q24.1	0.000241	1
TP53	Amp_16p13.2	0.000242	1
14q-Del	Del_4q34.2	0.000242	1
Del_9p23	Del_11q25	0.000242	1
4p-Del	Del_17p12	0.000248	1
5q-Del	9p-Del	0.000253	1
PKHD1	ZFP36L1	0.000258	1
5q-Del	Del_8p21.3	0.000258	1
Amp_16p13.2	Del_10q23.31	0.000261	1
Amp_1q21.3	Del_10q23.31	0.000267	1
ATM	CSMD3	0.000273	1
16p-Del	Del_2q34	0.000279	1
Del_14q24.1	Del_16p13.3	0.000289	1
Amp_8p11.23	Del_8p21.3	0.00029	1
10q-Del	Amp_5p15.33	0.000291	1
Del_7q36.3	Del_8p23.3	0.000294	1
Del_5q12.1	Del_22q13.32	0.000301	1
Amp_1p34.2	Amp_4q13.3	0.000305	1
16p-Del	Del_2q37.1	0.000308	1
Del_3p14.2	Del_22q13.32	0.000309	1
Del_2q37.1	Del_5q12.1	0.000311	1
16p-Del	Del_22q13.32	0.000312	1
5q-Del	Del_9p23	0.000314	1
Del_2q34	Del_6p25.3	0.000316	1
Del_6q27	Del_13q14.2	0.000317	1
4p-Del	Del_13q14.2	0.000318	1
Del_2q34	Del_11p15.5	0.00032	1
Amp_1q21.3	Amp_3p25.2	0.000327	1
4q-Del	5q-Del	0.000337	1
Del_3p14.2	Del_4q22.1	0.000343	1
HES1	Del_6p25.3	0.000378	1
Del_7q36.3	Del_8p21.3	0.000385	1
9q-Del	Del_11q25	0.000393	1
Del_14q24.1	Del_15q13.1	0.000393	1
20q-Amp	17p-Del	0.000395	1
Amp_1q23.3	Del_8p23.3	0.000404	1
22q-Del	Del_13q14.2	0.000425	1
9q-Del	Del_5q12.1	0.000429	1
Amp_1q23.3	Amp_20q11.21	0.000429	1
CTNNB1	17q-Amp	0.000433	1
14q-Del	8p-Del	0.000438	1
4p-Del	8p-Del	0.000438	1
Amp_8q22.3	Amp_19q13.43	0.000438	1
BCL2L1	7q-Amp	0.000443	1
10q-Del	Del_6q27	0.000444	1
Amp_8p11.21	Del_8p21.3	0.000449	1
15q-Del	6q-Del	0.000453	1
17p-Del	Del_3p14.2	0.000457	1
22q-Del	Del_8p21.3	0.000458	1
Amp_5p15.33	Del_8p23.3	0.00046	1
7q-Amp	Amp_20q11.21	0.000467	1
16p-Del	5q-Del	0.000473	1
22q-Del	Del_19p13.3	0.000473	1
Del_8p23.3	Del_11p15.5	0.000479	1
8p-Del	Del_6q27	0.000485	1
Amp_1q21.3	Del_8p23.3	0.000487	1
Amp_1q23.3	Amp_22q12.2	0.000493	1
19p-Del	Del_22q13.32	0.000494	1
TP53	Amp_10p14	0.000496	1
14q-Del	22q-Del	0.000516	1
Del_6q27	Del_16q23.1	0.000517	1
18q-Del	8p-Del	0.000523	1
Amp_1q23.3	Amp_8q22.3	0.000562	1
Del_3p14.2	Del_11q23.3	0.000565	1
Del_6p25.3	Del_18q23	0.000573	1
MLL2	MLL3	0.000576	1
Amp_10p14	Amp_16p13.2	0.000579	1
15q-Del	16p-Del	0.000605	1
6q-Del	Del_5q12.1	0.000607	1
Amp_3q26.33	Del_6p25.3	0.000623	1
4q-Del	9p-Del	0.00063	1
15q-Del	Del_16p13.3	0.000635	1
Del_4q34.2	Del_5q12.1	0.000638	1
Amp_6p22.3	Del_6p25.3	0.000642	1
Del_9p23	Del_18q23	0.00065	1
Amp_7p21.1	Amp_8q22.3	0.00066	1
ERCC2	Amp_3p25.2	0.000677	1
BCL2L1	7p-Amp	0.000684	1
Del_3p14.2	Del_11p15.5	0.000722	1
5q-Del	Del_18q23	0.000725	1
10q-Del	Del_8p21.3	0.000729	1
6q-Del	Del_8p21.3	0.000729	1
RB1	Del_10q23.31	0.000747	1
Amp_3p25.2	Del_17p12	0.000752	1
20p-Amp	10q-Del	0.000766	1
5q-Del	Del_17p12	0.00077	1
Del_17p12	Del_19p13.3	0.00077	1
Del_10q23.31	Del_14q24.1	0.000793	1
20q-Amp	10q-Del	0.000805	1
Del_2q22.1	Del_10q23.31	0.000812	1
10q-Del	11q-Del	0.000823	1
10q-Del	5q-Del	0.000823	1
11q-Del	6q-Del	0.000823	1
5q-Del	Del_15q13.1	0.000823	1
Amp_8p11.21	Del_8p23.3	0.000837	1
15q-Del	Del_3p14.2	0.000841	1
Del_4q22.1	Del_5q12.1	0.000862	1
CDKN1A	11p-Del	0.000866	1
Del_1p36.11	Del_9p21.3	0.000875	1
14q-Del	Amp_4p16.3	0.000886	1
20q-Amp	7p-Amp	0.000893	1
11q-Del	18q-Del	0.000894	1
Amp_19q12	Del_8p21.3	0.000895	1
Amp_6p22.3	Del_8p23.3	0.000897	1
Del_10q23.31	Del_18q23	0.000917	1
Amp_19q12	Del_14q24.1	0.000934	1
11p-Del	14q-Del	0.000939	1
11p-Del	4p-Del	0.000939	1
14q-Del	17p-Del	0.000939	1
9q-Del	Del_2q37.1	0.000939	1
Amp_4p16.3	Del_9p21.3	0.000941	1
10q-Del	Del_16q23.1	0.000942	1
Del_15q13.1	Del_16q23.1	0.000942	1
22q-Del	Del_17p12	0.00096	1
C3orf70	GNA13	0.000978	1
TP53	5p-Amp	0.000988	1
Del_6q27	Del_11p15.5	0.000989	1
Amp_3q26.33	Del_19p13.3	0.00099	1
Del_2q34	Del_13q14.2	0.000997	1
Amp_8q22.3	Amp_19q12	0.00101	1
Del_9p21.3	Del_17p12	0.00102	1
ERCC2	Del_16q23.1	0.00103	1
Amp_6p22.3	Amp_19q13.43	0.00103	1
16p-Del	18q-Del	0.00106	1
18q-Del	22q-Del	0.00106	1
18q-Del	Del_22q13.32	0.00106	1
RB1	Del_13q14.2	0.00109	1
8p-Del	Amp_5p15.33	0.00109	1
16p-Del	Del_2q22.1	0.0011	1
22q-Del	Del_2q22.1	0.0011	1
TMCO4	8p-Del	0.00112	1
Amp_8p11.23	Amp_8q22.3	0.00113	1
14q-Del	4p-Del	0.00115	1
Del_3p14.2	Del_8p21.3	0.00118	1
4q-Del	6q-Del	0.0012	1
Amp_4p16.3	Del_17p12	0.0012	1
14q-Del	15q-Del	0.00121	1
15q-Del	4p-Del	0.00121	1
14q-Del	Del_2q37.1	0.00122	1
Del_2q34	Del_5q12.1	0.00122	1
Amp_1q21.3	Amp_19q12	0.00124	1
15q-Del	17p-Del	0.00126	1
Del_4q22.1	Del_7q36.3	0.00126	1
17p-Del	6q-Del	0.00129	1
6q-Del	Del_4q22.1	0.00129	1
Amp_19q12	Amp_22q12.2	0.00132	1
Del_6p25.3	Del_14q24.1	0.00132	1
RB1	10q-Del	0.00134	1
8p-Del	Del_22q13.32	0.00134	1
Amp_1q21.3	Amp_16p13.2	0.00134	1
Del_5q12.1	Del_6q27	0.00136	1
Amp_3q26.33	Del_3p14.2	0.00137	1
RUNX1	Amp_1q21.3	0.00139	1
6q-Del	Del_4q34.2	0.00139	1
Del_4q34.2	Del_15q13.1	0.00139	1
Amp_6p22.3	Amp_8p11.21	0.00141	1
5q-Del	Amp_8p11.23	0.00142	1
FAT1	MLL2	0.00143	1
Del_12p13.1	Del_17p12	0.00143	1
17p-Del	Amp_20q11.21	0.00144	1
22q-Del	Del_8p23.3	0.00144	1
9q-Del	Amp_20q11.21	0.00148	1
SHANK1	Del_6p25.3	0.00149	1
SPTAN1	TSC1	0.00151	1
Amp_8p11.21	Amp_22q12.2	0.00155	1
Amp_3p25.2	Amp_19q12	0.00159	1
FGFR3	Del_11q23.3	0.0016	1
8p-Del	Del_17p12	0.0016	1
11q-Del	Del_2q37.1	0.00162	1
Amp_19q12	Del_8p23.3	0.00164	1
Del_10q23.31	Del_15q13.1	0.00165	1
15q-Del	18q-Del	0.00166	1
5q-Del	9q-Del	0.00169	1
Amp_1q21.3	Del_13q14.2	0.00171	1
Amp_7p21.1	Amp_19q12	0.00171	1
Del_4q22.1	Del_17p12	0.00173	1
18q-Del	Del_2q37.1	0.00174	1
Del_2q37.1	Del_14q24.1	0.00174	1
4q-Del	8p-Del	0.00177	1
14q-Del	Del_11p15.5	0.0018	1
Del_4q34.2	Del_11p15.5	0.00182	1
FGFR3	11p-Del	0.00184	1
Amp_8q22.3	Del_15q13.1	0.00186	1
17q-Amp	Amp_19q13.43	0.00187	1
20p-Amp	17p-Del	0.00187	1
PSIP1	TMCO4	0.00189	1
Del_4q34.2	Del_16q23.1	0.00189	1
MLL	THRAP3	0.0019	1
4p-Del	Del_8p23.3	0.0019	1
8p-Del	Del_14q24.1	0.0019	1
SPTAN1	Del_9p21.3	0.00191	1
Del_3p14.2	Del_9p21.3	0.00194	1
10q-Del	18q-Del	0.00196	1
Amp_1q21.3	Del_15q13.1	0.00198	1
KDM6A	Del_3p14.2	0.00199	1
Del_17p12	Del_18q23	0.00199	1
C3orf70	ERBB2	0.00201	1
6q-Del	Del_11q25	0.00202	1
8q-Amp	Del_6p25.3	0.00204	1
10q-Del	19p-Del	0.00205	1
PSIP1	9q-Del	0.00206	1
Del_13q14.2	Del_15q13.1	0.00206	1
Del_2q37.1	Del_15q13.1	0.00207	1
17p-Del	Del_11q25	0.00208	1
METTL3	16p-Del	0.00211	1
14q-Del	Del_6q27	0.00212	1
4p-Del	Del_6q27	0.00212	1
10q-Del	Del_15q13.1	0.00213	1
Amp_5p15.33	Del_8p21.3	0.00213	1
MLL3	RPTN	0.00215	1
Del_2q37.1	Del_7q36.3	0.00215	1
7p-Amp	Amp_20q11.21	0.00217	1
Amp_3p25.2	Del_4q34.2	0.00218	1
NF1	PSIP1	0.00219	1
Del_2q37.1	Del_18q23	0.00219	1
Amp_3q26.33	Amp_19q12	0.00221	1
22q-Del	Del_5q12.1	0.00231	1
15q-Del	8p-Del	0.00232	1
8p-Del	Amp_6p22.3	0.00232	1
CNNM4	Del_1q32.1	0.00234	1
16p-Del	Del_10q23.31	0.00234	1
SHANK1	THRAP3	0.00236	1
Amp_22q12.2	Del_22q13.32	0.00243	1
Del_10q23.31	Del_17p12	0.00243	1
8p-Del	Del_4q34.2	0.00245	1
Amp_11q13.3	Del_9p23	0.00245	1
CDKN1A	Del_11p15.5	0.0025	1
TMCO4	Amp_11q13.3	0.0025	1
Del_11p15.5	Del_19p13.3	0.0025	1
Amp_5p15.33	Amp_16p13.2	0.00252	1
Amp_3p25.2	Del_22q13.32	0.00254	1
Del_2q34	Del_3p14.2	0.00257	1
4p-Del	Del_8p21.3	0.00258	1
22q-Del	8p-Del	0.00262	1
Del_6q27	Del_11q23.3	0.00262	1
Del_6p25.3	Del_22q13.32	0.00263	1
ERCC2	KDM6A	0.00265	1
11p-Del	Del_2q37.1	0.00277	1
17p-Del	Del_2q37.1	0.00277	1
EP300	Del_8p23.3	0.00278	1
KDM6A	Del_11q23.3	0.00279	1
Del_3p14.2	Del_13q14.2	0.00279	1
Amp_6p22.3	Amp_7p11.2	0.00281	1
17p-Del	18q-Del	0.00283	1
Del_13q14.2	Del_18q23	0.00285	1
Amp_12q15	Amp_22q12.2	0.00286	1
Amp_22q12.2	Del_6p25.3	0.00286	1
Amp_22q12.2	Del_16q23.1	0.00286	1
NF1	RAI1	0.0029	1
Amp_8q22.3	Del_16p13.3	0.0029	1
ARID1A	CNNM4	0.00291	1
RPTN	Amp_13q22.1	0.00291	1
19p-Del	5q-Del	0.00291	1
20q-Amp	9q-Del	0.00294	1
Amp_8q22.3	Del_6p25.3	0.00296	1
Amp_13q22.1	Del_8p21.3	0.00298	1
RUNX1	SF1	0.00301	1
18q-Del	Del_9p21.3	0.00301	1
Amp_8p11.21	Amp_13q22.1	0.00303	1
Del_2q22.1	Del_6p25.3	0.00303	1
ATM	MLL3	0.00305	1
STAG2	TMCO4	0.00306	1
15q-Del	Del_8p21.3	0.00307	1
Del_2q37.1	Del_4q22.1	0.00308	1
Amp_19q13.43	Amp_20q11.21	0.00309	1
Del_11p15.5	Del_15q13.1	0.0031	1
8p-Del	Del_10q23.31	0.00311	1
Amp_3p25.2	Amp_4q13.3	0.00312	1
Del_4q34.2	Del_16p13.3	0.00314	1
Amp_17q23.3	Del_3p14.2	0.00317	1
Amp_16p13.2	Del_6p25.3	0.00322	1
11p-Del	Del_19p13.3	0.00323	1
Amp_19q13.43	Del_15q13.1	0.00326	1
14q-Del	9p-Del	0.00327	1
4p-Del	9p-Del	0.00327	1
ELF3	9q-Del	0.00331	1
22q-Del	Amp_20q11.21	0.00334	1
20p-Amp	Del_17p12	0.00335	1
RHOB	Amp_1q23.3	0.00336	1
9p-Del	Del_18q23	0.00336	1
22q-Del	Del_3p14.2	0.00338	1
Amp_3p25.2	Del_16q23.1	0.0034	1
14q-Del	6q-Del	0.00342	1
20q-Amp	Del_10q23.31	0.00343	1
4p-Del	Del_18q23	0.00344	1
Amp_5p15.33	Amp_7p11.2	0.00344	1
16p-Del	4p-Del	0.00345	1
22q-Del	4p-Del	0.00345	1
ERCC2	Del_13q14.2	0.00348	1
9q-Del	Del_18q23	0.00348	1
11p-Del	Amp_11q13.3	0.00349	1
17p-Del	Del_10q23.31	0.00349	1
20q-Amp	8q-Amp	0.00352	1
MLL2	7p-Amp	0.00354	1
MLL2	4q-Del	0.00354	1
TMCO4	Del_14q24.1	0.00356	1
9p-Del	Del_14q24.1	0.00356	1
CTNNB1	7q-Amp	0.00358	1
PSIP1	9p-Del	0.00361	1
4q-Del	Del_18q23	0.00365	1
Amp_16p13.2	Del_8p23.3	0.00369	1
Amp_3q26.33	Amp_10p14	0.00373	1
Amp_10p14	Del_10q23.31	0.00373	1
Amp_17q12	Del_17p12	0.00373	1
5q-Del	Amp_5p15.33	0.00375	1
11q-Del	Amp_11q13.3	0.00379	1
5q-Del	Del_10q23.31	0.00379	1
Del_2q34	Del_4q22.1	0.0038	1
11q-Del	Amp_4p16.3	0.00381	1
CDKN1A	Del_9p23	0.00382	1
Amp_20q11.21	Del_5q12.1	0.00386	1
Del_3p14.2	Del_11q25	0.00389	1
16p-Del	Del_6q27	0.00391	1
18q-Del	Del_19p13.3	0.00392	1
Del_14q24.1	Del_19p13.3	0.00392	1
Amp_19q12	Del_11p15.5	0.00395	1
Amp_3p25.2	Amp_17q12	0.00396	1
Del_15q13.1	Del_19p13.3	0.00398	1
MLL2	Del_4q34.2	0.00399	1
DNAH6	IDH1	0.00405	1
Del_2q37.1	Del_11q23.3	0.00405	1
CSMD3	Amp_8p11.21	0.00406	1
Del_2q22.1	Del_16p13.3	0.00406	1
MLL	TP53	0.00409	1
Amp_1q21.3	Del_16p13.3	0.00411	1
PLCXD3	Amp_5p15.33	0.00412	1
6q-Del	Del_16q23.1	0.00412	1
METTL3	PIK3CA	0.00413	1
TP53	Amp_5p15.33	0.00414	1
ERCC2	Del_6p25.3	0.00415	1
6q-Del	Del_18q23	0.00419	1
Del_15q13.1	Del_18q23	0.00419	1
4p-Del	Del_22q13.32	0.00422	1
BCL2L1	20p-Amp	0.00426	1
8q-Amp	Del_3p14.2	0.00427	1
Del_3p14.2	Del_18q23	0.00427	1
17p-Del	Del_18q23	0.00435	1
19p-Del	8p-Del	0.00437	1
17p-Del	Del_8p21.3	0.0044	1
RHOB	Amp_7p11.2	0.00443	1
Amp_1q21.3	Del_11p15.5	0.00449	1
Del_9p21.3	Del_18q23	0.0045	1
Amp_1q23.3	Del_11p15.5	0.00452	1
MBD1	ZFP36L1	0.00453	1
17q-Amp	Amp_22q12.2	0.00453	1
8q-Amp	Amp_3p25.2	0.00458	1
TP53	Amp_3p25.2	0.00463	1
ATM	PARD3	0.00469	1
Amp_20q11.21	Del_10q23.31	0.00469	1
Del_6q27	Del_11q25	0.00475	1
6q-Del	9p-Del	0.00478	1
10q-Del	11p-Del	0.00482	1
TMCO4	11p-Del	0.00485	1
TMCO4	17p-Del	0.00485	1
11p-Del	Del_Xq21.33	0.00485	1
Del_4q34.2	Del_13q14.2	0.00488	1
KDM6A	Del_17p12	0.00489	1
BCL2L1	Amp_7p11.2	0.0049	1
MLL3	PSIP1	0.00493	1
Amp_4q13.3	Del_13q14.2	0.00493	1
ATM	Amp_1q21.3	0.00502	1
20q-Amp	Del_16p13.3	0.00502	1
9p-Del	Del_4q34.2	0.00502	1
Del_11q23.3	Del_16p13.3	0.00502	1
8p-Del	Amp_19q13.43	0.00503	1
Amp_1q23.3	Del_1q32.1	0.00505	1
PSIP1	Del_9p23	0.00508	1
18q-Del	Del_6p25.3	0.00512	1
10q-Del	Amp_20q11.21	0.00513	1
22q-Del	Del_18q23	0.00513	1
Del_18q23	Del_22q13.32	0.00513	1
C3orf70	FBXW7	0.00516	1
FGFR3	11q-Del	0.00518	1
EP300	8p-Del	0.0052	1
17p-Del	8p-Del	0.0052	1
ZFP36L1	Del_6q27	0.00522	1
Amp_7p21.1	Amp_22q12.2	0.00522	1
Amp_22q12.2	Del_6q27	0.00522	1
9p-Del	Del_1p36.11	0.00523	1
18q-Del	Del_5q12.1	0.00528	1
FGFR3	17p-Del	0.00533	1
METTL3	Del_22q13.32	0.00535	1
MLL2	Amp_1p34.2	0.00537	1
CTNNB1	Amp_17q12	0.00539	1
MLL2	Amp_1q23.3	0.00539	1
Amp_4p16.3	Del_11q23.3	0.00546	1
ARID1A	NF1	0.00547	1
17p-Del	Del_4q22.1	0.00551	1
Amp_6p22.3	Amp_22q12.2	0.00552	1
8p-Del	Amp_13q22.1	0.00556	1
Amp_3p25.2	Del_5q12.1	0.00556	1
TP53	Del_19p13.3	0.00558	1
Amp_7p21.1	Amp_20q11.21	0.00558	1
Amp_1p34.2	Amp_6q21	0.00559	1
Amp_7p21.1	Del_10q23.31	0.00562	1
Amp_20q11.21	Del_12p13.1	0.00565	1
Del_6p25.3	Del_12p13.1	0.00567	1
8p-Del	Del_11p15.5	0.00574	1
Amp_10p14	Amp_19q13.43	0.00577	1
CDKN1A	9q-Del	0.00578	1
17p-Del	22q-Del	0.00578	1
MLL2	NFE2L2	0.00584	1
RBM10	RXRA	0.00587	1
11q-Del	14q-Del	0.00591	1
14q-Del	Del_19p13.3	0.00591	1
BCL2L1	Amp_7p21.1	0.00596	1
14q-Del	Del_10q23.31	0.00596	1
15q-Del	Amp_19q12	0.00596	1
PIK3CA	9p-Del	0.00602	1
DNAH6	Del_15q13.1	0.00605	1
3p-Amp	Del_6p25.3	0.00605	1
TP53	Del_16p13.3	0.00606	1
KIAA1267	NF1	0.0061	1
Amp_1q21.3	Del_17p12	0.0061	1
Del_1p36.11	Del_4q22.1	0.00611	1
ARID1B	FOXQ1	0.00613	1
4q-Del	Del_1p36.11	0.00613	1
Amp_3q26.33	Del_17p12	0.00621	1
11p-Del	Del_6q27	0.00632	1
17p-Del	Del_6q27	0.00632	1
5p-Amp	10q-Del	0.00633	1
Amp_1q21.3	Amp_3q26.33	0.00642	1
Amp_19q13.43	Del_6p25.3	0.00648	1
Amp_19q13.43	Del_16q23.1	0.00648	1
19q-Amp	Amp_10p14	0.00649	1
14q-Del	Del_5q12.1	0.00649	1
4q-Del	9q-Del	0.00654	1
4q-Del	Del_5q12.1	0.00654	1
17p-Del	Del_8p23.3	0.00655	1
15q-Del	Del_11p15.5	0.00661	1
FOXQ1	17q-Amp	0.00662	1
19q-Amp	Del_19p13.3	0.00665	1
Del_4q34.2	Del_18q23	0.00667	1
Amp_8p11.21	Del_5q12.1	0.00669	1
Amp_5p15.33	Del_16p13.3	0.0067	1
CSMD3	PARD3	0.00674	1
Amp_4p16.3	Del_14q24.1	0.00677	1
Amp_8q22.3	Amp_22q12.2	0.00678	1
TMCO4	Del_5q12.1	0.00679	1
ARID1B	3q-Amp	0.00681	1
4q-Del	Del_15q13.1	0.00681	1
SF1	Amp_19q13.43	0.00686	1
Del_2q34	Del_17p12	0.00687	1
8p-Del	Amp_1q21.3	0.00688	1
ERCC2	THRAP3	0.00689	1
Amp_1q21.3	Del_16q23.1	0.00691	1
ERCC2	Del_15q13.1	0.00692	1
RXRA	Del_8p21.3	0.00694	1
16p-Del	Del_8p21.3	0.00694	1
Amp_7p21.1	Amp_8p11.21	0.00694	1
RHOA	Amp_8q22.3	0.00697	1
ATM	Amp_8p11.21	0.00702	1
CDKN1A	Del_11q23.3	0.00704	1
TP53	Amp_7p11.2	0.00707	1
NF1	Amp_8q22.3	0.00711	1
PLCXD3	5p-Amp	0.00712	1
TP53	UNC93B1	0.00713	1
Amp_1q23.3	Amp_6p22.3	0.00714	1
BCL2L1	20q-Amp	0.00716	1
8q-Amp	Amp_19q13.43	0.00717	1
PARD3	SCARF2	0.00718	1
MLL2	Amp_1q21.3	0.0072	1
Del_2q34	Del_7q36.3	0.00721	1
6q-Del	Del_13q14.2	0.00722	1
KRAS	8q-Amp	0.00726	1
5p-Amp	16p-Del	0.00729	1
11q-Del	5q-Del	0.00729	1
CNOT1	DNAH6	0.00732	1
MLL3	RBM10	0.00732	1
ERBB3	RXRA	0.00735	1
Amp_10p14	Amp_19q12	0.00736	1
Del_2q34	Del_9p23	0.00738	1
RUNX1	Amp_6p22.3	0.00742	1
SPTAN1	Del_9p23	0.00753	1
Amp_1q23.3	Del_17p12	0.00753	1
Amp_3p25.2	Del_3p14.2	0.00753	1
Amp_20q11.21	Del_16p13.3	0.00754	1
RPTN	Amp_17q12	0.00755	1
Del_1q32.1	Del_3p14.2	0.00757	1
Del_8p21.3	Del_18q23	0.00758	1
Amp_1q23.3	Del_14q24.1	0.0077	1
Amp_8q22.3	Amp_12q15	0.00772	1
4p-Del	Del_16p13.3	0.00773	1
Amp_5p15.33	Amp_19q13.43	0.00773	1
TSC1	Del_9p21.3	0.00774	1
Del_14q24.1	Del_18q23	0.00775	1
KDM6A	PIK3CA	0.00777	1
Amp_20q11.21	Del_8p23.3	0.00789	1
Amp_7p21.1	Amp_8p11.23	0.00794	1
Del_11q25	Del_16p13.3	0.00794	1
PLCXD3	Del_5q12.1	0.00802	1
METTL3	Del_15q13.1	0.00807	1
Amp_1q23.3	Del_8p21.3	0.00813	1
16p-Del	Del_13q14.2	0.00815	1
Del_15q13.1	Del_17p12	0.00818	1
18q-Del	Del_15q13.1	0.0082	1
5q-Del	Del_2q34	0.0082	1
6q-Del	Del_14q24.1	0.0082	1
Del_5q12.1	Del_15q13.1	0.0082	1
14q-Del	Del_4q22.1	0.00821	1
19p-Del	Del_3p14.2	0.00822	1
20p-Amp	Del_16p13.3	0.00825	1
8p-Del	Amp_1q23.3	0.00825	1
Amp_3p25.2	Amp_16p13.2	0.00825	1
FAT1	Del_5q12.1	0.00829	1
ARID1B	Amp_20q11.21	0.00832	1
Del_4q34.2	Del_14q24.1	0.00832	1
ERBB2	MLL	0.00833	1
Amp_13q22.1	Amp_19q12	0.00833	1
Amp_22q12.2	Del_2q37.1	0.00834	1
Del_4q22.1	Del_16p13.3	0.00838	1
Del_4q22.1	Del_13q14.2	0.00844	1
CDKN2A	CNOT1	0.00846	1
ATM	FAT1	0.0085	1
Amp_1q21.3	Amp_10p14	0.0085	1
Amp_8p11.23	Del_8p23.3	0.00851	1
9p-Del	Del_2q34	0.00853	1
Amp_19q12	Del_9p23	0.00853	1
CUL1	EP300	0.00857	1
Amp_1q23.3	Amp_11q13.3	0.0086	1
Del_4q34.2	Del_7q36.3	0.0088	1
Amp_1q21.3	Amp_8q22.3	0.00885	1
TP53	Amp_1p34.2	0.00888	1
19p-Del	Del_6q27	0.0089	1
Amp_22q12.2	Del_2q34	0.0089	1
19p-Del	Del_8p21.3	0.00891	1
15q-Del	Del_14q24.1	0.00896	1
15q-Del	Del_5q12.1	0.00903	1
C3orf70	ZBTB7B	0.00905	1
Del_13q14.2	Del_16p13.3	0.00905	1
HES1	TSC1	0.00906	1
Amp_19q12	Del_15q13.1	0.00911	1
Del_5q12.1	Del_18q23	0.00914	1
ERBB2	GNA13	0.00915	1
17q-Amp	Amp_19q12	0.00915	1
KDM6A	TXNIP	0.00916	1
Del_16q23.1	Del_22q13.32	0.00916	1
7p-Amp	Amp_8p11.23	0.00918	1
11q-Del	Del_18q23	0.0092	1
Del_18q23	Del_19p13.3	0.0092	1
FOXQ1	Amp_3p25.2	0.00921	1
PTEN	Amp_3p25.2	0.00921	1
CREBBP	RB1	0.00925	1
NFE2L2	19p-Del	0.00926	1
Amp_3p25.2	Del_14q24.1	0.0093	1
ERBB3	Amp_22q12.2	0.00941	1
Del_13q14.2	Del_22q13.32	0.00941	1
FGFR3	NUDT11	0.00945	1
ATM	MLL2	0.00953	1
Amp_3p25.2	Del_6p25.3	0.00953	1
C3orf70	CREBBP	0.00959	1
Amp_3p25.2	Amp_6q21	0.00961	1
17p-Del	Amp_3q26.33	0.00964	1
Amp_19q12	Del_16p13.3	0.00967	1
19q-Amp	Amp_3q26.33	0.00968	1
22q-Del	Del_16q23.1	0.00969	1
Amp_1q23.3	Amp_19q13.43	0.0097	1
Del_8p21.3	Del_9p23	0.00972	1
18q-Del	Del_17p12	0.00984	1
Amp_10p14	Del_2q37.1	0.00984	1
Del_2q22.1	Del_16q23.1	0.00986	1
Del_2q22.1	Del_Xq21.33	0.01	1
MLL	NF1	0.0101	1
RXRA	8p-Del	0.0101	1
TMCO4	Del_17p12	0.0101	1
20q-Amp	Amp_11q13.3	0.0101	1
Amp_3q26.33	Amp_19q13.43	0.0101	1
ERCC2	RAI1	0.0102	1
18q-Del	Del_6q27	0.0102	1
Del_6p25.3	Del_16p13.3	0.0102	1
CNNM4	ERCC2	0.0104	1
RHOB	Del_12p13.1	0.0104	1
TP53	Del_8p23.3	0.0105	1
10q-Del	Del_2q22.1	0.0105	1
Amp_17q23.3	Amp_19q13.43	0.0105	1
Amp_19q13.43	Del_3p14.2	0.0105	1
Del_2q37.1	Del_12p13.1	0.0105	1
ZFP36L1	6q-Del	0.0106	1
15q-Del	Del_4q34.2	0.0106	1
ERBB2	METTL3	0.0107	1
ERBB2	5p-Amp	0.0107	1
RAI1	Amp_3p25.2	0.0107	1
Amp_3p25.2	Del_13q14.2	0.0108	1
RPTN	Del_8p21.3	0.0109	1
Amp_8q22.3	Amp_20q11.21	0.0109	1
Amp_8q22.3	Del_1q32.1	0.0109	1
Amp_11q13.3	Del_9p21.3	0.0109	1
Amp_17q23.3	Del_17p12	0.0109	1
Amp_22q12.2	Del_8p21.3	0.0109	1
C3orf70	PARD3	0.011	1
TMCO4	Del_11q23.3	0.011	1
11p-Del	Amp_1q23.3	0.011	1
15q-Del	Amp_1p34.2	0.011	1
4q-Del	Del_3p14.2	0.011	1
5q-Del	Del_4q34.2	0.011	1
9q-Del	Del_Xp11.3	0.011	1
Del_1q32.1	Del_11q23.3	0.011	1
Del_4q34.2	Del_19p13.3	0.011	1
CDKN2A	TP53	0.0111	1
RHOB	TP53	0.0111	1
3q-Amp	Amp_3p25.2	0.0111	1
14q-Del	18q-Del	0.0111	1
4q-Del	Del_8p23.3	0.0111	1
9p-Del	Amp_20q11.21	0.0111	1
Amp_3q26.33	Del_8p23.3	0.0111	1
Amp_5p15.33	Amp_19q12	0.0111	1
Amp_1q23.3	Amp_17q23.3	0.0112	1
Del_2q34	Del_22q13.32	0.0112	1
Amp_1q23.3	Amp_8p11.21	0.0113	1
Amp_17q23.3	Amp_20q11.21	0.0113	1
TMCO4	10q-Del	0.0114	1
ERBB2	RB1	0.0115	1
ERCC2	Amp_8p11.21	0.0115	1
MLL	PIK3CA	0.0115	1
CSMD3	19q-Amp	0.0116	1
Amp_4q13.3	Del_16p13.3	0.0116	1
CDKN2A	SCARF2	0.0117	1
PSIP1	Amp_4p16.3	0.0117	1
17p-Del	Del_12p13.1	0.0117	1
Amp_11q13.3	Amp_20q11.21	0.0117	1
3p-Amp	Del_2q22.1	0.0118	1
15q-Del	Del_10q23.31	0.0118	1
Amp_19q13.43	Del_8p23.3	0.0118	1
CTNNB1	Del_16q23.1	0.0119	1
THRAP3	Del_16q23.1	0.0119	1
1q-Amp	Del_16q23.1	0.0119	1
Del_4q22.1	Del_16q23.1	0.0119	1
10q-Del	Del_11q23.3	0.0121	1
6q-Del	Del_11q23.3	0.0121	1
Del_2q22.1	Del_12p13.1	0.0121	1
17p-Del	Del_1p36.11	0.0122	1
FGFR3	SPTAN1	0.0124	1
Amp_7p11.2	Amp_8p11.23	0.0124	1
14q-Del	Del_18q23	0.0125	1
ATM	TXNIP	0.0126	1
5p-Amp	Amp_7p11.2	0.0126	1
RHOB	7p-Amp	0.0127	1
Amp_20q11.21	Del_8p21.3	0.0127	1
NF1	7q-Amp	0.0128	1
1q-Amp	Amp_4q13.3	0.0128	1
11p-Del	Amp_1q21.3	0.0128	1
Amp_1q21.3	Del_5q12.1	0.0128	1
Amp_6p22.3	Amp_16p13.2	0.0128	1
Amp_3p25.2	Del_8p21.3	0.0129	1
Del_9p23	Del_14q24.1	0.0129	1
ERCC2	HRAS	0.013	1
FGFR3	18q-Del	0.013	1
20q-Amp	Amp_8q22.3	0.0131	1
Amp_8q22.3	Amp_11q22.2	0.0132	1
Amp_19q13.43	Del_16p13.3	0.0132	1
Del_2q22.1	Del_11p15.5	0.0132	1
ASXL2	11p-Del	0.0133	1
Amp_20q11.21	Del_14q24.1	0.0134	1
Del_5q12.1	Del_6p25.3	0.0135	1
PARD3	SHANK1	0.0136	1
20q-Amp	Del_12p13.1	0.0136	1
11q-Del	Amp_1q23.3	0.0136	1
Del_11q23.3	Del_12p13.1	0.0136	1
FBXW7	RBM10	0.0137	1
Amp_5p15.33	Del_14q24.1	0.0137	1
Amp_7p21.1	Del_4q34.2	0.0137	1
Amp_19q13.43	Del_5q12.1	0.0137	1
Del_6p25.3	Del_8p23.3	0.0137	1
GNA13	SHANK1	0.0138	1
3q-Amp	8q-Amp	0.0138	1
10q-Del	Del_18q23	0.0138	1
Amp_10p14	Del_2q34	0.0138	1
CDKN2A	MLL2	0.0139	1
EP300	Del_16p13.3	0.0139	1
TP53	4q-Del	0.0139	1
20p-Amp	Del_8p21.3	0.0139	1
17p-Del	Del_16p13.3	0.0139	1
Amp_8p11.21	Del_14q24.1	0.0139	1
DNAH6	ZFP36L1	0.014	1
4q-Del	Del_8p21.3	0.014	1
Amp_20q11.21	Del_6p25.3	0.014	1
GNA13	Del_4q34.2	0.0141	1
Del_4q34.2	Del_Xq21.33	0.0141	1
17p-Del	Del_2q34	0.0142	1
Amp_19q13.43	Amp_22q12.2	0.0144	1
CTNNB1	FBXW7	0.0145	1
ERCC2	FBXW7	0.0145	1
19q-Amp	Amp_5p15.33	0.0145	1
3p-Amp	Del_2q34	0.0145	1
14q-Del	Del_7q36.3	0.0145	1
CDKN1A	18q-Del	0.0146	1
11q-Del	Del_14q24.1	0.0146	1
Del_4q22.1	Del_18q23	0.0146	1
ARID1B	MLL3	0.0147	1
15q-Del	Del_16q23.1	0.0147	1
ERCC2	Amp_17q12	0.0148	1
METTL3	RUNX1	0.0148	1
RHOA	5p-Amp	0.0148	1
19p-Del	Del_10q23.31	0.0148	1
4p-Del	Del_2q34	0.0148	1
20q-Amp	Amp_1q23.3	0.0149	1
Amp_1q23.3	Amp_7p21.1	0.0149	1
Del_6q27	Del_18q23	0.0149	1
Del_11q25	Del_18q23	0.0149	1
C3orf70	KIAA1267	0.0151	1
CUL1	16p-Del	0.0151	1
HES1	MLL2	0.0151	1
METTL3	22q-Del	0.0151	1
RB1	16p-Del	0.0151	1
RB1	22q-Del	0.0151	1
Amp_6p22.3	Del_14q24.1	0.0151	1
GNA13	Del_11p15.5	0.0152	1
MLL3	STAG2	0.0152	1
TMCO4	Del_11p15.5	0.0152	1
10q-Del	Del_6p25.3	0.0152	1
Del_4q34.2	Del_22q13.32	0.0152	1
CNOT1	Amp_10p14	0.0153	1
KIAA1267	RHOB	0.0153	1
3q-Amp	Amp_20q11.21	0.0153	1
6q-Del	Amp_20q11.21	0.0153	1
Amp_11q13.3	Del_Xq21.33	0.0153	1
BCL2L1	9q-Del	0.0154	1
8p-Del	Del_16q23.1	0.0154	1
Amp_19q13.43	Del_17p12	0.0154	1
DNAH6	1q-Amp	0.0155	1
THRAP3	TXNIP	0.0155	1
4p-Del	Del_2q37.1	0.0155	1
Amp_1q21.3	Amp_11q13.3	0.0155	1
10q-Del	17p-Del	0.0156	1
11p-Del	Del_15q13.1	0.0156	1
17p-Del	Del_15q13.1	0.0156	1
Amp_7p21.1	Amp_10p14	0.0156	1
Amp_19q13.43	Del_8p21.3	0.0156	1
NF1	PIK3CA	0.0157	1
5p-Amp	Del_5q12.1	0.0157	1
10q-Del	4p-Del	0.0157	1
11p-Del	4q-Del	0.0157	1
14q-Del	Del_15q13.1	0.0157	1
5q-Del	Del_2q37.1	0.0157	1
9p-Del	Amp_11q13.3	0.0157	1
Amp_16p13.2	Amp_17q12	0.0157	1
Del_10q23.31	Del_11p15.5	0.0157	1
GNA13	Del_19p13.3	0.0158	1
RHOA	Amp_5p15.33	0.0158	1
11q-Del	Del_1q32.1	0.0158	1
Amp_6p22.3	Del_16q23.1	0.0158	1
9p-Del	Del_Xp11.3	0.0159	1
Del_1p36.11	Del_3p14.2	0.0159	1
KLF5	SHANK1	0.016	1
10q-Del	Del_19p13.3	0.016	1
14q-Del	Amp_1q23.3	0.016	1
Amp_3q26.33	Del_6q27	0.016	1
Amp_3q26.33	Del_11q25	0.016	1
Amp_4p16.3	Del_1q32.1	0.0161	1
Amp_3p25.2	Del_1q32.1	0.0162	1
EP300	MLL2	0.0163	1
C3orf70	ZNF185	0.0164	1
CDKN1A	FGFR3	0.0164	1
KDM6A	Del_8p21.3	0.0164	1
SPTAN1	15q-Del	0.0164	1
5q-Del	Del_16p13.3	0.0164	1
Amp_3p25.2	Del_8p23.3	0.0164	1
Amp_8q22.3	Del_11p15.5	0.0164	1
ARID1A	FAM47C	0.0165	1
ARID1A	RBM10	0.0165	1
Amp_6p22.3	Del_2q34	0.0165	1
RAI1	ZBTB7B	0.0166	1
TMCO4	UNC93B1	0.0166	1
16p-Del	Amp_5p15.33	0.0166	1
22q-Del	Amp_5p15.33	0.0166	1
Amp_4p16.3	Del_12p13.1	0.0166	1
1q-Amp	9q-Del	0.0167	1
Del_1p36.11	Del_5q12.1	0.0167	1
ARID1A	ATM	0.0168	1
Amp_1q23.3	Amp_4p16.3	0.0168	1
Del_4q22.1	Del_8p21.3	0.0168	1
RXRA	Del_8p23.3	0.0169	1
Amp_1q21.3	Del_14q24.1	0.0169	1
Amp_19q13.43	Del_11p15.5	0.017	1
17p-Del	Amp_4p16.3	0.0171	1
Del_11p15.5	Del_22q13.32	0.0171	1
KDM6A	Del_11q25	0.0173	1
NRAS	8p-Del	0.0173	1
SHANK1	Amp_6p22.3	0.0173	1
11q-Del	Del_5q12.1	0.0173	1
Amp_5p15.33	Amp_6p22.3	0.0173	1
NF1	Amp_7p21.1	0.0175	1
THRAP3	Amp_7p21.1	0.0175	1
ERCC2	NF1	0.0176	1
Amp_10p14	Del_16q23.1	0.0176	1
TP53	Del_13q14.2	0.0178	1
KDM6A	Del_8p23.3	0.018	1
9p-Del	Del_4q22.1	0.018	1
Amp_3p25.2	Amp_3q26.33	0.018	1
Amp_17q23.3	Amp_22q12.2	0.018	1
Amp_17q23.3	Del_16q23.1	0.018	1
Del_3p14.2	Del_16p13.3	0.0181	1
Amp_1p34.2	Amp_8p11.21	0.0182	1
CDKN2A	ZFP36L1	0.0183	1
HES1	SCARF2	0.0183	1
CUL1	PTEN	0.0184	1
4q-Del	Del_14q24.1	0.0185	1
Amp_7p21.1	Del_8p23.3	0.0185	1
Amp_8q22.3	Del_17p12	0.0186	1
7q-Amp	Del_Xq21.33	0.0187	1
8q-Amp	Amp_11q22.2	0.0187	1
15q-Del	Del_Xq21.33	0.0187	1
Del_4q34.2	Del_12p13.1	0.0187	1
Del_8p21.3	Del_16q23.1	0.0187	1
RAI1	Del_6p25.3	0.0188	1
RBM10	Del_6p25.3	0.0188	1
TP53	8p-Del	0.019	1
Del_4q22.1	Del_10q23.31	0.019	1
BCL2L1	9p-Del	0.0191	1
ERBB2	Del_10q23.31	0.0191	1
METTL3	Del_14q24.1	0.0191	1
Amp_1q23.3	Amp_3q26.33	0.0191	1
TP53	Del_17p12	0.0192	1
14q-Del	Amp_13q22.1	0.0192	1
4p-Del	Del_16q23.1	0.0192	1
RBM10	STAG2	0.0193	1
Amp_1q23.3	Del_12p13.1	0.0193	1
Amp_16p13.2	Del_5q12.1	0.0193	1
HLA-A	Del_Xp11.3	0.0194	1
Amp_1q23.3	Del_22q13.32	0.0194	1
Amp_20q11.21	Del_1q32.1	0.0196	1
Amp_20q11.21	Del_Xq21.33	0.0196	1
Amp_1q21.3	Amp_22q12.2	0.0197	1
5q-Del	Del_9p21.3	0.0198	1
Del_1p36.11	Del_9p23	0.0198	1
7q-Amp	Amp_8q22.3	0.0199	1
KIAA1267	PIK3CA	0.0201	1
8p-Del	Amp_8p11.21	0.0201	1
ATM	ERCC2	0.0202	1
6q-Del	Del_10q23.31	0.0202	1
ASXL2	Amp_1q21.3	0.0203	1
ARID1B	FBXW7	0.0204	1
ARID1B	Amp_1p34.2	0.0204	1
PIK3CA	Del_9p21.3	0.0205	1
18q-Del	Del_4q22.1	0.0205	1
Del_9p21.3	Del_Xq21.33	0.0205	1
EP300	16p-Del	0.0206	1
FBXW7	Del_11q23.3	0.0206	1
11p-Del	16p-Del	0.0206	1
11p-Del	Del_6p25.3	0.0207	1
4p-Del	Del_11p15.5	0.0207	1
TP53	4p-Del	0.0208	1
ARID1B	Amp_3p25.2	0.0209	1
EP300	Del_8p21.3	0.0209	1
19p-Del	6q-Del	0.0209	1
FAM47C	Amp_7p11.2	0.021	1
KRAS	Amp_8q22.3	0.021	1
Amp_7p21.1	Del_6p25.3	0.021	1
ERCC2	MBD1	0.0211	1
RB1	Del_2q34	0.0211	1
20q-Amp	Del_5q12.1	0.0211	1
7q-Amp	8q-Amp	0.0211	1
Del_6p25.3	Del_10q23.31	0.0211	1
14q-Del	9q-Del	0.0213	1
14q-Del	Del_9p23	0.0213	1
4p-Del	9q-Del	0.0213	1
Amp_12q15	Del_11p15.5	0.0213	1
FAM47C	Del_Xq21.33	0.0214	1
FGFR3	Del_11q25	0.0215	1
14q-Del	Amp_22q12.2	0.0215	1
8p-Del	Amp_16p13.2	0.0215	1
Del_4q22.1	Del_6q27	0.0215	1
Amp_6q21	Del_22q13.32	0.0216	1
10q-Del	Del_4q22.1	0.0217	1
Amp_1q23.3	Amp_10p14	0.0217	1
TXNIP	Amp_3p25.2	0.0218	1
19q-Amp	Amp_17q23.3	0.0218	1
19q-Amp	Del_3p14.2	0.0218	1
Del_3p14.2	Del_7q36.3	0.0218	1
SPTAN1	Del_18q23	0.0219	1
11p-Del	Del_13q14.2	0.022	1
ASXL2	TSC1	0.0221	1
CSMD3	Del_13q14.2	0.0221	1
Del_8p23.3	Del_9p23	0.0222	1
Del_17p12	Del_22q13.32	0.0222	1
RHOB	Amp_20q11.21	0.0223	1
Amp_1p34.2	Amp_1q21.3	0.0223	1
Amp_1p34.2	Del_15q13.1	0.0223	1
ELF3	RHOB	0.0224	1
FAT1	NFE2L2	0.0224	1
NF1	Del_2q22.1	0.0224	1
RPTN	3p-Amp	0.0224	1
3p-Amp	Amp_1q23.3	0.0224	1
Amp_11q22.2	Del_11q23.3	0.0224	1
Amp_6p22.3	Del_2q37.1	0.0225	1
1q-Amp	Del_11q23.3	0.0226	1
14q-Del	Amp_3p25.2	0.0227	1
10q-Del	Del_3p14.2	0.0228	1
8p-Del	Amp_8q22.3	0.0228	1
RXRA	Del_14q24.1	0.0229	1
11q-Del	Del_22q13.32	0.0229	1
ERBB3	FAT1	0.0231	1
PSIP1	11p-Del	0.0231	1
11p-Del	15q-Del	0.0231	1
Del_1q32.1	Del_14q24.1	0.0231	1
Del_11p15.5	Del_16p13.3	0.0231	1
20q-Amp	Amp_7p21.1	0.0232	1
9p-Del	Del_6q27	0.0232	1
ARID1B	PSIP1	0.0233	1
ATM	Amp_8p11.23	0.0233	1
HES1	Del_16q23.1	0.0234	1
ARID1A	ERBB3	0.0235	1
METTL3	Del_2q37.1	0.0235	1
NF1	7p-Amp	0.0235	1
20p-Amp	Del_8p23.3	0.0236	1
CNOT1	PARD3	0.0237	1
TP53	Del_16q23.1	0.0237	1
TMCO4	Amp_1q23.3	0.0238	1
Amp_4q13.3	Amp_7p21.1	0.0238	1
Del_2q22.1	Del_22q13.32	0.0238	1
Del_6q27	Del_7q36.3	0.0238	1
8q-Amp	Del_1q32.1	0.0239	1
Amp_1q23.3	Amp_16p13.2	0.0239	1
Amp_3p25.2	Amp_13q22.1	0.024	1
HES1	RXRA	0.0241	1
NUDT11	18q-Del	0.0241	1
7p-Amp	Del_4q34.2	0.0241	1
ERBB3	Amp_6p22.3	0.0242	1
8q-Amp	Amp_22q12.2	0.0242	1
Amp_16p13.2	Del_14q24.1	0.0242	1
MBD1	PARD3	0.0243	1
11p-Del	Amp_19q13.43	0.0243	1
18q-Del	Del_4q34.2	0.0243	1
4p-Del	Del_19p13.3	0.0243	1
Amp_19q12	Del_6p25.3	0.0243	1
Del_1q32.1	Del_12p13.1	0.0243	1
10q-Del	Del_5q12.1	0.0244	1
Amp_1q21.3	Amp_6p22.3	0.0245	1
Amp_7p11.2	Amp_8q22.3	0.0245	1
PTEN	Del_2q34	0.0246	1
11q-Del	15q-Del	0.0246	1
15q-Del	Del_19p13.3	0.0246	1
7p-Amp	Amp_8q22.3	0.0249	1
Amp_3p25.2	Del_2q37.1	0.0249	1
Amp_6p22.3	Del_4q34.2	0.0249	1
CDKN2A	Del_6q27	0.0251	1
11q-Del	Del_2q34	0.0253	1
Amp_7p11.2	Amp_19q13.43	0.0253	1
FOXQ1	Amp_19q13.43	0.0254	1
MLL	RB1	0.0255	1
TP53	Amp_3q26.33	0.0255	1
Amp_1q23.3	Del_6p25.3	0.0255	1
EP300	MBD1	0.0256	1
GNA13	11p-Del	0.0256	1
RAI1	Del_2q37.1	0.0256	1
STAG2	9q-Del	0.0256	1
17p-Del	Del_1q32.1	0.0256	1
15q-Del	Amp_3p25.2	0.0257	1
KDM6A	Amp_17q12	0.0259	1
NF1	8q-Amp	0.0259	1
STAG2	4p-Del	0.0259	1
3q-Amp	Del_11q25	0.0259	1
10q-Del	Del_11q25	0.0259	1
14q-Del	Del_16p13.3	0.0259	1
Amp_8p11.23	Del_Xp11.3	0.0259	1
Del_11q25	Del_15q13.1	0.0259	1
KDM6A	9q-Del	0.026	1
CDKN1A	11q-Del	0.0261	1
CDKN2A	Del_4q22.1	0.0263	1
MBD1	Del_8p23.3	0.0264	1
RPTN	3q-Amp	0.0264	1
TMCO4	Del_8p23.3	0.0264	1
20p-Amp	7p-Amp	0.0264	1
10q-Del	Del_7q36.3	0.0264	1
18q-Del	Del_3p14.2	0.0264	1
6q-Del	Del_7q36.3	0.0264	1
Amp_3p25.2	Amp_8p11.23	0.0264	1
Del_3p14.2	Del_14q24.1	0.0264	1
FAT1	Del_10q23.31	0.0265	1
CDKN1A	Del_18q23	0.0266	1
5p-Amp	Amp_13q22.1	0.0267	1
5p-Amp	Del_16q23.1	0.0267	1
CUL1	MLL2	0.0268	1
KDM6A	NF1	0.0268	1
11q-Del	19p-Del	0.0268	1
KLF5	PKHD1	0.0269	1
Amp_20q11.21	Del_9p23	0.027	1
Amp_20q11.21	Del_22q13.32	0.0271	1
ELF3	Amp_20q11.21	0.0272	1
IDH1	PKHD1	0.0272	1
Del_8p21.3	Del_12p13.1	0.0273	1
ASXL2	Del_11p15.5	0.0275	1
ERBB3	GNA13	0.0275	1
7p-Amp	Amp_10p14	0.0275	1
14q-Del	Del_3p14.2	0.0275	1
4p-Del	Del_3p14.2	0.0275	1
Amp_8p11.23	Amp_13q22.1	0.0276	1
ARID1B	RAI1	0.0277	1
MLL2	TMCO4	0.0277	1
18q-Del	Del_10q23.31	0.0277	1
Amp_8p11.21	Del_6p25.3	0.028	1
Amp_10p14	Del_7q36.3	0.028	1
BCL2L1	Amp_20q11.21	0.0281	1
Del_6p25.3	Del_17p12	0.0282	1
20p-Amp	9q-Del	0.0283	1
15q-Del	Del_17p12	0.0283	1
Amp_4q13.3	Del_2q22.1	0.0283	1
Del_2q22.1	Del_7q36.3	0.0283	1
ERCC2	RUNX1	0.0284	1
CUL1	MLL	0.0285	1
METTL3	Del_16q23.1	0.0285	1
Amp_7p11.2	Amp_19q12	0.0285	1
19p-Del	Del_5q12.1	0.0287	1
FOXA1	Del_4q34.2	0.0288	1
PTEN	Del_4q34.2	0.0288	1
THRAP3	Del_4q34.2	0.0288	1
Del_1p36.11	Del_4q34.2	0.0288	1
ATM	Amp_1p34.2	0.0289	1
15q-Del	Del_1p36.11	0.0289	1
7p-Amp	Amp_6p22.3	0.029	1
3p-Amp	Del_11p15.5	0.0291	1
Amp_10p14	Amp_20q11.21	0.0292	1
Amp_7p21.1	Del_5q12.1	0.0293	1
Del_1p36.11	Del_2q37.1	0.0293	1
FBXW7	METTL3	0.0294	1
FOXA1	19p-Del	0.0294	1
ARID1B	Del_6p25.3	0.0295	1
ERCC2	Amp_6p22.3	0.0295	1
RHOB	Amp_8q22.3	0.0296	1
ELF3	KDM6A	0.0297	1
TP53	Amp_6q21	0.0297	1
11p-Del	8p-Del	0.0297	1
8p-Del	Del_4q22.1	0.0298	1
Del_1q32.1	Del_22q13.32	0.0299	1
CDKN1A	9p-Del	0.03	1
Del_4q22.1	Del_8p23.3	0.03	1
PSIP1	20q-Amp	0.0302	1
PSIP1	Del_11q23.3	0.0302	1
20q-Amp	7q-Amp	0.0302	1
Amp_3q26.33	Amp_6p22.3	0.0302	1
TSC1	9q-Del	0.0303	1
18q-Del	Del_11q25	0.0303	1
Del_7q36.3	Del_9p23	0.0303	1
ATM	ELF3	0.0304	1
18q-Del	Del_8p21.3	0.0304	1
Amp_3p25.2	Del_15q13.1	0.0304	1
Amp_6p22.3	Del_3p14.2	0.0304	1
ATM	NFE2L2	0.0305	1
FAM47C	Amp_8q22.3	0.0306	1
TMCO4	Del_8p21.3	0.0306	1
10q-Del	4q-Del	0.0306	1
FAT1	Amp_4q13.3	0.0307	1
10q-Del	Amp_16p13.2	0.0307	1
3q-Amp	Del_9p21.3	0.0308	1
15q-Del	Del_4q22.1	0.0308	1
Amp_8p11.21	Del_11p15.5	0.0308	1
Del_8p23.3	Del_16q23.1	0.0308	1
GNA13	KIAA1267	0.0309	1
RXRA	17q-Amp	0.0309	1
SPTAN1	9p-Del	0.0309	1
16p-Del	Del_Xq21.33	0.0309	1
Del_3p14.2	Del_8p23.3	0.0309	1
ASXL2	MLL	0.031	1
7q-Amp	Amp_22q12.2	0.0311	1
Del_1p36.11	Del_10q23.31	0.0311	1
ATM	Amp_1q23.3	0.0312	1
8q-Amp	Amp_17q23.3	0.0312	1
Amp_1q21.3	Amp_19q13.43	0.0312	1
Del_9p23	Del_Xq21.33	0.0312	1
SHANK1	TXNIP	0.0313	1
PKHD1	Amp_20q11.21	0.0314	1
Amp_16p13.2	Amp_20q11.21	0.0314	1
20q-Amp	Amp_8p11.21	0.0316	1
Del_2q22.1	Del_11q23.3	0.0316	1
RB1	Amp_1q21.3	0.0317	1
RAI1	RXRA	0.032	1
22q-Del	Amp_16p13.2	0.032	1
PSIP1	Amp_20q11.21	0.0321	1
14q-Del	Amp_6p22.3	0.0321	1
PSIP1	Del_5q12.1	0.0323	1
ASXL2	Del_18q23	0.0324	1
17q-Amp	Del_16q23.1	0.0324	1
20p-Amp	22q-Del	0.0324	1
Amp_5p15.33	Amp_8p11.23	0.0324	1
Amp_12q15	Del_Xq21.33	0.0324	1
Amp_13q22.1	Del_Xq21.33	0.0324	1
ERCC2	Amp_1q21.3	0.0325	1
KLF5	PARD3	0.0325	1
3q-Amp	Amp_1q23.3	0.0325	1
Amp_20q11.21	Del_19p13.3	0.0326	1
CUL1	HLA-A	0.0327	1
SHANK1	Del_2q37.1	0.0327	1
Amp_7p11.2	Amp_8p11.21	0.0327	1
3q-Amp	Del_2q22.1	0.0329	1
8q-Amp	Del_8p21.3	0.0329	1
Amp_8p11.21	Del_15q13.1	0.0329	1
FOXQ1	RAI1	0.033	1
RAI1	THRAP3	0.033	1
Amp_1q23.3	Del_19p13.3	0.033	1
ARID1A	Amp_6p22.3	0.0331	1
RHOA	20p-Amp	0.0331	1
RPTN	Del_2q34	0.0333	1
TMCO4	9q-Del	0.0333	1
MLL3	Del_5q12.1	0.0334	1
Amp_7p21.1	Amp_17q23.3	0.0334	1
NFE2L2	Amp_3q26.33	0.0336	1
ARID1A	KLF5	0.0337	1
CNNM4	NF1	0.0337	1
Del_5q12.1	Del_16q23.1	0.034	1
FAT1	Amp_1q21.3	0.0341	1
Amp_22q12.2	Del_11p15.5	0.0341	1
11p-Del	Del_2q34	0.0343	1
14q-Del	Amp_19q12	0.0343	1
DNAH6	Amp_19q12	0.0344	1
19q-Amp	9p-Del	0.0344	1
9p-Del	Del_7q36.3	0.0344	1
CDKN2A	FAT1	0.0346	1
RHOB	20q-Amp	0.0346	1
ARID1A	METTL3	0.0347	1
Amp_8q22.3	Del_5q12.1	0.0347	1
Amp_11q13.3	Del_3p14.2	0.0348	1
RPTN	15q-Del	0.0349	1
5q-Del	Del_4q22.1	0.0349	1
GNA13	SPTAN1	0.035	1
Amp_11q13.3	Del_11p15.5	0.035	1
MLL2	Del_7q36.3	0.0351	1
9q-Del	Del_4q34.2	0.0352	1
ATM	NF1	0.0353	1
16p-Del	Amp_10p14	0.0356	1
22q-Del	Amp_10p14	0.0356	1
Amp_10p14	Del_22q13.32	0.0356	1
Amp_16p13.2	Del_22q13.32	0.0357	1
8q-Amp	Amp_5p15.33	0.0358	1
FAM47C	PLCXD3	0.036	1
STAG2	1q-Amp	0.036	1
1q-Amp	Del_16p13.3	0.036	1
Del_1p36.11	Del_16p13.3	0.036	1
RXRA	Del_6p25.3	0.0361	1
16p-Del	Del_6p25.3	0.0361	1
22q-Del	Del_6p25.3	0.0361	1
11q-Del	Amp_3q26.33	0.0362	1
SHANK1	Del_16q23.1	0.0363	1
16p-Del	Del_15q13.1	0.0364	1
11q-Del	Del_12p13.1	0.0365	1
Amp_1q23.3	Del_18q23	0.0366	1
17p-Del	Del_Xp11.3	0.0367	1
BCL2L1	Del_9p23	0.0368	1
CNOT1	ZFP36L1	0.0368	1
RAI1	Amp_22q12.2	0.0368	1
8q-Amp	Amp_7p21.1	0.0368	1
ERCC2	Del_22q13.32	0.0369	1
3q-Amp	Del_11q23.3	0.0369	1
Amp_7p21.1	Amp_19q13.43	0.0369	1
Amp_7p11.2	Del_16q23.1	0.0369	1
Del_11q23.3	Del_15q13.1	0.0369	1
IDH1	1q-Amp	0.037	1
Amp_6p22.3	Amp_13q22.1	0.037	1
ERBB3	10q-Del	0.0372	1
8q-Amp	Amp_20q11.21	0.0372	1
PIK3CA	Del_9p23	0.0373	1
RXRA	Del_17p12	0.0373	1
CTNNB1	PARD3	0.0374	1
METTL3	Del_3p14.2	0.0374	1
MLL2	RHOB	0.0374	1
PARD3	THRAP3	0.0374	1
Amp_10p14	Del_6q27	0.0374	1
RAI1	Amp_1q23.3	0.0377	1
Amp_8q22.3	Amp_11q13.3	0.0378	1
ARID1A	MLL	0.0379	1
DNAH6	SCARF2	0.0379	1
FGFR3	PIK3CA	0.0379	1
PIK3CA	STAG2	0.0379	1
Amp_22q12.2	Del_4q34.2	0.0379	1
6q-Del	Amp_8q22.3	0.038	1
Amp_1p34.2	Amp_3p25.2	0.038	1
PIK3CA	Del_4q22.1	0.0381	1
NF1	Amp_7p11.2	0.0382	1
RHOB	TMCO4	0.0382	1
Amp_8p11.23	Amp_20q11.21	0.0383	1
Amp_17q23.3	Amp_19q12	0.0384	1
KRAS	RXRA	0.0385	1
TP53	Del_3p14.2	0.0385	1
16p-Del	Amp_6p22.3	0.0386	1
ATM	RPTN	0.0388	1
CDKN2A	NF1	0.0388	1
ERBB3	Del_10q23.31	0.0388	1
Amp_17q23.3	Del_11p15.5	0.0389	1
Amp_3p25.2	Amp_10p14	0.039	1
8q-Amp	Del_15q13.1	0.0392	1
11p-Del	Del_12p13.1	0.0392	1
9q-Del	Del_14q24.1	0.0393	1
Amp_19q12	Del_17p12	0.0393	1
Amp_8q22.3	Del_16q23.1	0.0394	1
Amp_19q13.43	Del_14q24.1	0.0394	1
ERBB2	PARD3	0.0395	1
Amp_3p25.2	Del_11p15.5	0.0396	1
CNOT1	19q-Amp	0.0398	1
RUNX1	Amp_1q23.3	0.0398	1
Amp_10p14	Del_8p21.3	0.0398	1
20q-Amp	9p-Del	0.0399	1
9p-Del	Amp_1q23.3	0.0399	1
KIAA1267	SPTAN1	0.0401	1
ARID1B	ELF3	0.0402	1
PKHD1	Amp_13q22.1	0.0402	1
CSMD3	PLCXD3	0.0404	1
ERBB3	PIK3CA	0.0404	1
FGFR3	KIAA1267	0.0404	1
MLL3	5q-Del	0.0404	1
PSIP1	14q-Del	0.0404	1
18q-Del	Del_1p36.11	0.0404	1
Del_2q37.1	Del_19p13.3	0.0404	1
SPTAN1	9q-Del	0.0405	1
Amp_12q15	Del_8p21.3	0.0405	1
ELF3	GNA13	0.0406	1
HES1	17q-Amp	0.0406	1
MBD1	ZBTB7B	0.0406	1
TMCO4	Amp_17q23.3	0.0406	1
IDH1	5p-Amp	0.0407	1
Amp_7p11.2	Amp_20q11.21	0.0407	1
Amp_8q22.3	Del_18q23	0.0407	1
Amp_17q12	Amp_20q11.21	0.0407	1
KDM6A	Amp_6q21	0.0409	1
MLL	Amp_1q21.3	0.041	1
ATM	ERBB2	0.0412	1
9q-Del	Amp_11q13.3	0.0412	1
Amp_1q21.3	Amp_7p21.1	0.0412	1
Amp_1q21.3	Del_6q27	0.0412	1
Del_2q34	Del_15q13.1	0.0412	1
TP53	Del_8p21.3	0.0414	1
BCL2L1	11q-Del	0.0415	1
BCL2L1	5q-Del	0.0415	1
16p-Del	Amp_1q21.3	0.0416	1
22q-Del	Amp_1q21.3	0.0416	1
Amp_22q12.2	Del_10q23.31	0.0416	1
RAI1	Del_2q34	0.0417	1
RHOA	8q-Amp	0.0417	1
5q-Del	Amp_8q22.3	0.0417	1
Amp_8q22.3	Del_3p14.2	0.0418	1
Del_2q34	Del_11q23.3	0.0419	1
8q-Amp	Amp_6p22.3	0.042	1
CTNNB1	7p-Amp	0.0421	1
IDH1	Amp_4q13.3	0.0422	1
STAG2	Del_9p21.3	0.0422	1
14q-Del	Del_11q23.3	0.0422	1
TMCO4	14q-Del	0.0423	1
14q-Del	Del_1q32.1	0.0423	1
MLL3	PKHD1	0.0424	1
MLL3	Amp_16p13.2	0.0424	1
NRAS	Amp_19q12	0.0424	1
20p-Amp	Amp_1q23.3	0.0425	1
17q-Amp	Del_17p12	0.0426	1
Amp_10p14	Amp_13q22.1	0.0426	1
Del_1q32.1	Del_17p12	0.0426	1
Del_11p15.5	Del_13q14.2	0.0427	1
MLL3	SCARF2	0.0428	1
3q-Amp	Amp_22q12.2	0.0428	1
11p-Del	Del_22q13.32	0.0428	1
6q-Del	Amp_22q12.2	0.0428	1
Amp_5p15.33	Amp_7p21.1	0.043	1
MLL2	Amp_7p21.1	0.0431	1
3q-Amp	17p-Del	0.0433	1
CDKN1A	Del_11q25	0.0434	1
EP300	Del_4q22.1	0.0434	1
11q-Del	Del_6q27	0.0434	1
Del_11q25	Del_19p13.3	0.0434	1
KDM6A	PLCXD3	0.0435	1
Amp_3q26.33	Amp_5p15.33	0.0435	1
GNA13	Del_6q27	0.0436	1
TMCO4	Del_11q25	0.0436	1
ZFP36L1	Del_16q23.1	0.0436	1
16p-Del	4q-Del	0.0436	1
Del_6q27	Del_Xq21.33	0.0436	1
Amp_1p34.2	Del_4q22.1	0.0438	1
19p-Del	Del_8p23.3	0.0441	1
PIK3CA	UNC93B1	0.0442	1
20q-Amp	Del_14q24.1	0.0442	1
Del_11q23.3	Del_14q24.1	0.0442	1
ELF3	9p-Del	0.0443	1
ATM	PIK3CA	0.0446	1
PIK3CA	Del_4q34.2	0.0446	1
Amp_6p22.3	Amp_17q12	0.0446	1
PKHD1	SHANK1	0.0447	1
TXNIP	11q-Del	0.0447	1
TMCO4	9p-Del	0.0448	1
9p-Del	Del_Xq21.33	0.0448	1
Amp_8p11.23	Del_3p14.2	0.0448	1
ARID1A	IDH1	0.045	1
ERCC2	Amp_8q22.3	0.045	1
8q-Amp	Del_16q23.1	0.045	1
11q-Del	Del_16p13.3	0.045	1
CNOT1	MLL2	0.0452	1
ZFP36L1	Amp_10p14	0.0452	1
Amp_4p16.3	Amp_12q15	0.0453	1
PARD3	Del_4q22.1	0.0454	1
20p-Amp	Amp_11q13.3	0.0455	1
20p-Amp	Del_10q23.31	0.0455	1
Amp_3q26.33	Del_22q13.32	0.0455	1
SHANK1	Del_8p21.3	0.0456	1
7p-Amp	8q-Amp	0.0456	1
MLL2	SCARF2	0.0458	1
TXNIP	Amp_1q23.3	0.0459	1
CDKN1A	PKHD1	0.0461	1
5q-Del	Amp_16p13.2	0.0461	1
Amp_3p25.2	Del_12p13.1	0.0461	1
Del_5q12.1	Del_9p21.3	0.0462	1
ERBB3	7q-Amp	0.0463	1
RBM10	Del_14q24.1	0.0463	1
CDKN2A	Del_4q34.2	0.0464	1
RHOB	Del_4q34.2	0.0464	1
SCARF2	Amp_12q15	0.0466	1
14q-Del	Del_2q34	0.0466	1
19p-Del	Del_16q23.1	0.0466	1
3q-Amp	Amp_19q13.43	0.0467	1
6q-Del	Amp_19q13.43	0.0467	1
8p-Del	Amp_3q26.33	0.0467	1
ERBB2	Amp_3q26.33	0.0468	1
RHOB	20p-Amp	0.0469	1
KDM6A	Del_15q13.1	0.047	1
NFE2L2	Del_1p36.11	0.047	1
1q-Amp	16p-Del	0.047	1
Amp_13q22.1	Del_4q34.2	0.047	1
CTNNB1	8q-Amp	0.0472	1
MLL	Del_15q13.1	0.0472	1
6q-Del	Amp_13q22.1	0.0472	1
Del_5q12.1	Del_Xp11.3	0.0472	1
ELF3	RHOA	0.0473	1
RAI1	TXNIP	0.0473	1
3p-Amp	Del_9p21.3	0.0473	1
8q-Amp	Amp_3q26.33	0.0473	1
10q-Del	Amp_1q21.3	0.0473	1
6q-Del	Amp_1q21.3	0.0473	1
FOXA1	Amp_6p22.3	0.0474	1
SCARF2	SHANK1	0.0474	1
ATM	ZBTB7B	0.0476	1
TP53	Amp_1q21.3	0.0477	1
NF1	STAG2	0.0478	1
GNA13	MBD1	0.0479	1
Amp_8p11.21	Del_17p12	0.048	1
RBM10	Amp_5p15.33	0.0481	1
Amp_8p11.23	Del_7q36.3	0.0481	1
Amp_20q11.21	Del_2q22.1	0.0481	1
Del_7q36.3	Del_16p13.3	0.0481	1
Amp_7p11.2	Amp_22q12.2	0.0483	1
Del_3p14.2	Del_16q23.1	0.0483	1
KDM6A	Amp_1p34.2	0.0485	1
KIAA1267	MLL2	0.0485	1
Amp_19q12	Del_19p13.3	0.0487	1
KIAA1267	Del_3p14.2	0.0488	1
NFE2L2	Del_3p14.2	0.0488	1
RXRA	Amp_17q23.3	0.0488	1
C3orf70	PSIP1	0.0489	1
CUL1	15q-Del	0.0489	1
FGFR3	Del_11p15.5	0.0489	1
RB1	Del_22q13.32	0.0491	1
ARID1A	Del_Xq21.33	0.0492	1
ERCC2	Amp_1p34.2	0.0493	1
8p-Del	Amp_20q11.21	0.0493	1
Amp_3p25.2	Del_2q34	0.0493	1
ARID1B	EP300	0.0495	1
RAI1	Del_4q34.2	0.0495	1
18q-Del	Del_2q34	0.0496	1
Del_2q34	Del_14q24.1	0.0496	1
ARID1B	ZFP36L1	0.0498	1
PARD3	Del_13q14.2	0.0498	1
20q-Amp	Amp_17q23.3	0.0499	1
IDH1	Amp_10p14	0.05	1
MBD1	Amp_8p11.21	0.05	1
17q-Amp	Amp_8p11.21	0.05	1
19q-Amp	Del_11p15.5	0.05	1
BCL2L1	ZNF185	0.0502	1
RB1	Del_8p23.3	0.0503	1
11p-Del	Amp_12q15	0.0503	1
17p-Del	Del_6p25.3	0.0503	1
FGFR3	PSIP1	0.0504	1
PSIP1	STAG2	0.0504	1
Del_2q22.1	Del_11q25	0.0504	1
Amp_7p11.2	Amp_10p14	0.0505	1
18q-Del	Del_8p23.3	0.0506	1
4q-Del	Del_7q36.3	0.0506	1
EP300	PLCXD3	0.0507	1
SF1	TP53	0.0507	1
TXNIP	Del_4q34.2	0.0507	1
PSIP1	20p-Amp	0.0508	1
20p-Amp	7q-Amp	0.0508	1
8q-Amp	Del_18q23	0.0508	1
10q-Del	Del_4q34.2	0.0508	1
CDKN2A	Del_10q23.31	0.0509	1
RHOB	Amp_11q13.3	0.0509	1
FBXW7	MBD1	0.051	1
TMCO4	Amp_1p34.2	0.051	1
CNNM4	RPTN	0.0515	1
PTEN	Del_22q13.32	0.0515	1
11q-Del	16p-Del	0.0516	1
11q-Del	22q-Del	0.0516	1
Del_8p21.3	Del_11q25	0.0516	1
Del_2q34	Del_12p13.1	0.0517	1
3p-Amp	Del_11q23.3	0.0518	1
CREBBP	STAG2	0.0519	1
Amp_10p14	Del_8p23.3	0.0519	1
RB1	8p-Del	0.052	1
RHOB	Amp_13q22.1	0.052	1
8p-Del	9p-Del	0.052	1
PIK3CA	PKHD1	0.0521	1
ASXL2	PKHD1	0.0522	1
Amp_1q23.3	Del_5q12.1	0.0522	1
PTEN	Amp_22q12.2	0.0523	1
Amp_22q12.2	Del_1p36.11	0.0523	1
Del_13q14.2	Del_17p12	0.0523	1
MLL2	Del_10q23.31	0.0524	1
Amp_1q23.3	Del_3p14.2	0.0524	1
5p-Amp	Amp_7p21.1	0.0525	1
Amp_10p14	Del_13q14.2	0.0528	1
SPTAN1	Del_15q13.1	0.0529	1
NF1	Del_6q27	0.053	1
RPTN	Amp_3p25.2	0.053	1
3q-Amp	11q-Del	0.0531	1
11q-Del	Del_15q13.1	0.0531	1
Amp_8q22.3	Del_6q27	0.0532	1
DNAH6	PARD3	0.0534	1
FAT1	GNA13	0.0534	1
HRAS	Del_12p13.1	0.0534	1
20q-Amp	Del_1q32.1	0.0534	1
10q-Del	Del_17p12	0.0535	1
KIAA1267	Del_6q27	0.0536	1
MLL	Amp_1q23.3	0.0536	1
Amp_1q23.3	Amp_12q15	0.0536	1
Amp_11q22.2	Del_11q25	0.0536	1
ELF3	Del_17p12	0.0537	1
8p-Del	Del_18q23	0.0537	1
CDKN2A	PLCXD3	0.0538	1
CNNM4	EP300	0.0538	1
EP300	NF2	0.0538	1
SF1	Amp_8q22.3	0.0538	1
Amp_3p25.2	Amp_12q15	0.0541	1
FOXQ1	HES1	0.0542	1
FOXQ1	ZBTB7B	0.0542	1
HES1	PTEN	0.0542	1
11q-Del	Del_2q22.1	0.0544	1
HES1	Amp_6p22.3	0.0545	1
Amp_6p22.3	Amp_6q21	0.0545	1
Amp_7p21.1	Del_16q23.1	0.0547	1
SPTAN1	18q-Del	0.0549	1
11p-Del	Del_8p23.3	0.0552	1
14q-Del	Del_12p13.1	0.0553	1
C3orf70	RAI1	0.0555	1
PTEN	Del_16q23.1	0.0555	1
THRAP3	Del_6p25.3	0.0555	1
7q-Amp	Del_16q23.1	0.0555	1
GNA13	Del_Xp11.3	0.0556	1
NF1	TMCO4	0.0556	1
Del_12p13.1	Del_14q24.1	0.0556	1
METTL3	Del_2q34	0.0558	1
9q-Del	Del_2q34	0.056	1
ELF3	PKHD1	0.0561	1
ERBB3	RBM10	0.0561	1
17p-Del	Del_2q22.1	0.0563	1
16p-Del	Amp_4q13.3	0.0564	1
CDKN2A	4q-Del	0.0566	1
RHOB	4q-Del	0.0566	1
RXRA	8q-Amp	0.0567	1
RXRA	Del_18q23	0.0567	1
16p-Del	Del_18q23	0.0567	1
Amp_11q22.2	Del_18q23	0.0567	1
ASXL2	ERBB2	0.0568	1
Del_1q32.1	Del_2q34	0.0569	1
CSMD3	Amp_6q21	0.057	1
KIAA1267	Del_2q37.1	0.057	1
MLL3	RXRA	0.057	1
RXRA	Del_2q37.1	0.057	1
Amp_8p11.23	Del_22q13.32	0.0571	1
ERBB3	IDH1	0.0572	1
16p-Del	Amp_22q12.2	0.0572	1
Amp_1q21.3	Amp_6q21	0.0572	1
CREBBP	KRAS	0.0575	1
Del_6q27	Del_Xp11.3	0.0575	1
10q-Del	14q-Del	0.0577	1
4p-Del	Del_15q13.1	0.0577	1
ARID1B	UNC93B1	0.0578	1
UNC93B1	4q-Del	0.0578	1
ARID1B	FAT1	0.0579	1
CDKN2A	PTEN	0.0579	1
CDKN2A	THRAP3	0.0579	1
FOXA1	RHOB	0.0579	1
RHOB	THRAP3	0.0579	1
NF2	TXNIP	0.0581	1
PIK3CA	18q-Del	0.0581	1
11q-Del	Amp_3p25.2	0.0581	1
Amp_1q21.3	Del_4q34.2	0.0581	1
TP53	Amp_8p11.21	0.0584	1
SPTAN1	Del_11p15.5	0.0585	1
Amp_22q12.2	Del_3p14.2	0.0585	1
NF1	Amp_19q12	0.0586	1
SCARF2	Amp_7p21.1	0.0587	1
19p-Del	Del_11q25	0.0587	1
Amp_7p21.1	Del_13q14.2	0.0587	1
Amp_7p21.1	Del_4q22.1	0.0588	1
CSMD3	Amp_8q22.3	0.0589	1
Amp_1q21.3	Amp_8p11.21	0.0591	1
RB1	Amp_10p14	0.0595	1
7p-Amp	Amp_3p25.2	0.0596	1
Del_8p23.3	Del_12p13.1	0.0596	1
CNNM4	5p-Amp	0.0598	1
FBXW7	RAI1	0.0598	1
FOXQ1	Amp_7p11.2	0.0598	1
Del_4q22.1	Del_14q24.1	0.0599	1
RHOA	Amp_19q13.43	0.0602	1
Amp_22q12.2	Del_19p13.3	0.0604	1
ERCC2	Del_3p14.2	0.0605	1
MBD1	PKHD1	0.0605	1
THRAP3	Del_13q14.2	0.0605	1
20q-Amp	Del_19p13.3	0.0605	1
Amp_16p13.2	Del_Xq21.33	0.0605	1
CDKN1A	TSC1	0.0606	1
Amp_8p11.21	Del_22q13.32	0.0607	1
HES1	Amp_19q13.43	0.0608	1
8q-Amp	Amp_10p14	0.0608	1
Amp_5p15.33	Amp_22q12.2	0.0608	1
RBM10	20p-Amp	0.0614	1
RXRA	17p-Del	0.0614	1
4p-Del	Del_10q23.31	0.0614	1
Amp_5p15.33	Del_19p13.3	0.0614	1
Amp_11q13.3	Del_16p13.3	0.0614	1
ERBB2	RUNX1	0.0615	1
3p-Amp	Del_9p23	0.0615	1
Amp_3q26.33	Del_11q23.3	0.0616	1
Del_10q23.31	Del_11q23.3	0.0616	1
MLL	Amp_19q12	0.0617	1
ERBB2	SCARF2	0.062	1
FGFR3	Del_18q23	0.0622	1
Amp_7p21.1	Amp_16p13.2	0.0622	1
Del_16p13.3	Del_18q23	0.0622	1
8p-Del	Amp_8p11.23	0.0624	1
CSMD3	TXNIP	0.0625	1
KIAA1267	NRAS	0.0625	1
KIAA1267	UNC93B1	0.0625	1
NRAS	RXRA	0.0625	1
3p-Amp	Del_12p13.1	0.0625	1
8p-Del	Del_3p14.2	0.0625	1
Amp_8p11.23	Del_4q22.1	0.0625	1
Amp_8q22.3	Amp_16p13.2	0.0625	1
19q-Amp	Del_18q23	0.0626	1
6q-Del	9q-Del	0.0626	1
CSMD3	FAM47C	0.0628	1
FAM47C	Del_16p13.3	0.0628	1
RAI1	STAG2	0.0628	1
RB1	RUNX1	0.0628	1
ARID1A	Del_16p13.3	0.063	1
Amp_3q26.33	Del_8p21.3	0.0631	1
Amp_8p11.21	Amp_17q12	0.0632	1
ERBB3	Amp_12q15	0.0634	1
ERBB3	Del_6p25.3	0.0634	1
CSMD3	HLA-A	0.0635	1
CSMD3	UNC93B1	0.0635	1
Amp_4p16.3	Del_11q25	0.0635	1
Amp_5p15.33	Del_22q13.32	0.0635	1
Amp_12q15	Amp_19q13.43	0.0635	1
KIAA1267	Del_4q22.1	0.0636	1
NFE2L2	Del_4q22.1	0.0636	1
16p-Del	Del_4q22.1	0.0636	1
CTNNB1	Del_Xq21.33	0.0637	1
FOXA1	17q-Amp	0.0637	1
PTEN	Del_1q32.1	0.0637	1
THRAP3	Del_Xq21.33	0.0637	1
TMCO4	1q-Amp	0.0637	1
1q-Amp	Del_Xq21.33	0.0637	1
Del_1p36.11	Del_Xq21.33	0.0637	1
20q-Amp	Del_9p23	0.0638	1
Amp_5p15.33	Amp_8p11.21	0.0638	1
CNOT1	SHANK1	0.0643	1
RAI1	SHANK1	0.0643	1
ATM	Del_Xq21.33	0.0644	1
ATM	C3orf70	0.0645	1
KDM6A	Amp_13q22.1	0.0645	1
Amp_6p22.3	Amp_20q11.21	0.0645	1
Del_2q34	Del_11q25	0.0645	1
IDH1	Del_16q23.1	0.0646	1
CDKN2A	KIAA1267	0.0648	1
RHOB	RXRA	0.0648	1
CNNM4	METTL3	0.0649	1
RHOA	20q-Amp	0.0649	1
20p-Amp	Del_5q12.1	0.0653	1
20p-Amp	Del_19p13.3	0.0653	1
Amp_3q26.33	Del_9p23	0.0653	1
CDKN1A	HES1	0.0654	1
CDKN1A	ZBTB7B	0.0654	1
3q-Amp	Del_3p14.2	0.0654	1
Amp_5p15.33	Amp_10p14	0.0654	1
6q-Del	Del_Xq21.33	0.0656	1
Amp_8p11.21	Del_Xp11.3	0.0657	1
Amp_6p22.3	Del_22q13.32	0.0658	1
KDM6A	Amp_3p25.2	0.066	1
CSMD3	Amp_13q22.1	0.0661	1
TP53	16p-Del	0.0661	1
IDH1	MLL3	0.0663	1
Del_2q34	Del_18q23	0.0665	1
CNOT1	NF1	0.0666	1
RXRA	TXNIP	0.0667	1
CNOT1	Del_6p25.3	0.067	1
Amp_17q12	Amp_22q12.2	0.067	1
10q-Del	Del_11p15.5	0.0671	1
6q-Del	Del_11p15.5	0.0671	1
KDM6A	RXRA	0.0673	1
NRAS	Amp_22q12.2	0.0674	1
CREBBP	ERCC2	0.0676	1
SPTAN1	14q-Del	0.0677	1
10q-Del	Amp_8p11.23	0.0678	1
15q-Del	Del_18q23	0.0678	1
MLL3	Amp_1q23.3	0.0679	1
FOXQ1	8p-Del	0.068	1
Amp_3p25.2	Amp_20q11.21	0.0682	1
TMCO4	Del_10q23.31	0.0683	1
Amp_4p16.3	Amp_5p15.33	0.0686	1
CTNNB1	Amp_17q23.3	0.0688	1
ELF3	1q-Amp	0.0688	1
FOXQ1	Del_3p14.2	0.0688	1
19p-Del	Del_11q23.3	0.0688	1
Amp_19q13.43	Del_19p13.3	0.0688	1
METTL3	Amp_11q13.3	0.0691	1
RHOB	RPTN	0.0692	1
BCL2L1	ELF3	0.0693	1
DNAH6	HES1	0.0693	1
TXNIP	Amp_6q21	0.0693	1
Amp_17q23.3	Del_14q24.1	0.0693	1
FBXW7	PARD3	0.0694	1
Amp_1q21.3	Amp_4q13.3	0.0697	1
RPTN	Del_16q23.1	0.0698	1
19q-Amp	Amp_13q22.1	0.0698	1
20q-Amp	22q-Del	0.0698	1
22q-Del	Del_11q23.3	0.0698	1
ARID1B	C3orf70	0.0699	1
ERCC2	Amp_1q23.3	0.0699	1
ZFP36L1	Amp_19q12	0.0701	1
11p-Del	Del_16p13.3	0.0701	1
15q-Del	Amp_1q23.3	0.0701	1
PSIP1	Del_11p15.5	0.0702	1
22q-Del	Del_11p15.5	0.0704	1
CTNNB1	MLL2	0.0705	1
MLL2	PTEN	0.0705	1
Amp_17q23.3	Del_18q23	0.0707	1
TSC1	17q-Amp	0.0708	1
Amp_1q21.3	Amp_17q23.3	0.071	1
Amp_3q26.33	Del_11p15.5	0.0712	1
ELF3	PSIP1	0.0713	1
Del_2q37.1	Del_11q25	0.0713	1
ELF3	Del_4q34.2	0.0714	1
ERBB3	SPTAN1	0.0714	1
RB1	Del_19p13.3	0.0715	1
5p-Amp	Amp_11q22.2	0.0715	1
9p-Del	Del_19p13.3	0.0715	1
Amp_12q15	Amp_20q11.21	0.0716	1
ARID1A	PIK3CA	0.0717	1
IDH1	Amp_1q23.3	0.0718	1
20p-Amp	Del_6p25.3	0.0718	1
Amp_13q22.1	Del_22q13.32	0.0718	1
FOXA1	Amp_10p14	0.0719	1
Amp_1q21.3	Del_22q13.32	0.0719	1
Amp_20q11.21	Del_2q37.1	0.0719	1
ARID1B	Amp_1q23.3	0.072	1
PIK3CA	SPTAN1	0.0721	1
20p-Amp	8p-Del	0.0721	1
10q-Del	Amp_1q23.3	0.0722	1
CDKN2A	UNC93B1	0.0723	1
MBD1	Del_7q36.3	0.0723	1
TMCO4	Amp_4q13.3	0.0723	1
17q-Amp	19q-Amp	0.0723	1
ARID1A	Amp_1p34.2	0.0725	1
8p-Del	Del_11q25	0.0725	1
Del_8p21.3	Del_13q14.2	0.0725	1
CNNM4	Amp_5p15.33	0.0726	1
CNOT1	SPTAN1	0.0729	1
5q-Del	Del_16q23.1	0.0729	1
Amp_8p11.21	Del_4q22.1	0.0729	1
Del_2q22.1	Del_4q22.1	0.0729	1
Del_6p25.3	Del_19p13.3	0.0729	1
KIAA1267	14q-Del	0.073	1
14q-Del	16p-Del	0.073	1
20p-Amp	Del_12p13.1	0.0732	1
18q-Del	Amp_20q11.21	0.0732	1
Del_12p13.1	Del_22q13.32	0.0732	1
ARID1A	RUNX1	0.0734	1
Amp_1q21.3	Amp_20q11.21	0.0734	1
CTNNB1	Amp_7p21.1	0.0736	1
1q-Amp	Del_11q25	0.0736	1
CTNNB1	KRAS	0.0738	1
CTNNB1	RUNX1	0.0738	1
FAM47C	Amp_16p13.2	0.0738	1
RBM10	Amp_16p13.2	0.0738	1
Del_1p36.11	Del_Xp11.3	0.0738	1
Del_6q27	Del_9p23	0.0739	1
MLL3	RAI1	0.074	1
11p-Del	Del_8p21.3	0.074	1
DNAH6	ERBB3	0.0741	1
10q-Del	Amp_10p14	0.0742	1
EP300	HES1	0.0749	1
TMCO4	Amp_20q11.21	0.0749	1
19q-Amp	5p-Amp	0.0751	1
KDM6A	TP53	0.0752	1
3p-Amp	Del_2q37.1	0.0752	1
Amp_6q21	Del_4q22.1	0.0752	1
ERBB2	ERCC2	0.0753	1
ERCC2	6q-Del	0.0753	1
3q-Amp	Del_9p23	0.0754	1
6q-Del	Del_9p23	0.0754	1
FBXW7	Del_22q13.32	0.0755	1
ELF3	TSC1	0.0756	1
TSC1	Amp_17q23.3	0.0756	1
Amp_4p16.3	Del_5q12.1	0.0757	1
RXRA	Del_2q34	0.0758	1
Del_9p21.3	Del_12p13.1	0.0758	1
ERCC2	ZNF185	0.0759	1
SPTAN1	Amp_8p11.23	0.0759	1
1q-Amp	Amp_1p34.2	0.0762	1
Amp_22q12.2	Del_2q22.1	0.0764	1
FGFR3	TMCO4	0.0766	1
18q-Del	Del_14q24.1	0.0767	1
PSIP1	Del_9p21.3	0.0768	1
KDM6A	Del_9p21.3	0.0769	1
PSIP1	Del_11q25	0.0771	1
15q-Del	Del_6q27	0.0771	1
RXRA	18q-Del	0.0772	1
Amp_5p15.33	Amp_13q22.1	0.0772	1
Amp_5p15.33	Del_6p25.3	0.0772	1
Amp_11q13.3	Amp_19q13.43	0.0772	1
C3orf70	MLL2	0.0773	1
Amp_7p21.1	Del_14q24.1	0.0773	1
Del_11q25	Del_14q24.1	0.0773	1
NUDT11	4p-Del	0.0774	1
UNC93B1	4p-Del	0.0774	1
Amp_8q22.3	Amp_13q22.1	0.0774	1
Del_4q22.1	Del_11p15.5	0.0774	1
20q-Amp	Del_6p25.3	0.0775	1
Amp_1q23.3	Del_13q14.2	0.0776	1
Amp_13q22.1	Del_2q37.1	0.0776	1
CDKN1A	5q-Del	0.0777	1
CUL1	22q-Del	0.0777	1
KIAA1267	METTL3	0.0777	1
MLL	Amp_6p22.3	0.0782	1
CDKN1A	Amp_4p16.3	0.0783	1
PKHD1	Del_8p21.3	0.0783	1
Amp_8p11.21	Del_13q14.2	0.0783	1
Amp_16p13.2	Del_8p21.3	0.0783	1
FAM47C	IDH1	0.0784	1
IDH1	RBM10	0.0784	1
TP53	Amp_1q23.3	0.0784	1
ELF3	17p-Del	0.0785	1
11p-Del	Amp_17q23.3	0.0785	1
17p-Del	Amp_17q23.3	0.0785	1
CSMD3	Amp_8p11.23	0.0786	1
ERBB3	NF1	0.0787	1
C3orf70	STAG2	0.079	1
CUL1	Del_16p13.3	0.079	1
METTL3	Del_16p13.3	0.079	1
3p-Amp	Amp_8p11.23	0.079	1
Amp_3q26.33	Del_9p21.3	0.079	1
NUDT11	11p-Del	0.0791	1
ATM	FBXW7	0.0792	1
Del_7q36.3	Del_13q14.2	0.0795	1
FGFR3	TSC1	0.0796	1
Amp_12q15	Del_12p13.1	0.0797	1
ELF3	Amp_11q13.3	0.0798	1
Amp_17q23.3	Del_10q23.31	0.0798	1
Del_3p14.2	Del_10q23.31	0.0798	1
ARID1B	Amp_3q26.33	0.08	1
7p-Amp	Del_10q23.31	0.08	1
Amp_8q22.3	Amp_17q23.3	0.08	1
ATM	SHANK1	0.0803	1
19p-Del	22q-Del	0.0803	1
ERCC2	HES1	0.0804	1
ERCC2	ZBTB7B	0.0804	1
ERCC2	Amp_6q21	0.0804	1
KDM6A	17p-Del	0.0805	1
RUNX1	3q-Amp	0.0806	1
RUNX1	Del_15q13.1	0.0806	1
ARID1B	SHANK1	0.0807	1
Amp_22q12.2	Del_9p23	0.0807	1
MLL	Amp_13q22.1	0.0809	1
Amp_13q22.1	Del_6p25.3	0.0809	1
SPTAN1	5q-Del	0.081	1
Del_13q14.2	Del_14q24.1	0.081	1
KDM6A	NRAS	0.0811	1
KDM6A	UNC93B1	0.0811	1
MLL3	PLCXD3	0.0811	1
DNAH6	TMCO4	0.0812	1
DNAH6	17q-Amp	0.0812	1
CNOT1	6q-Del	0.0813	1
RBM10	3q-Amp	0.0813	1
14q-Del	Amp_17q23.3	0.0814	1
ERCC2	ZFP36L1	0.0816	1
MLL2	7q-Amp	0.0819	1
RHOB	Del_8p23.3	0.0819	1
TMCO4	11q-Del	0.082	1
11q-Del	Del_Xq21.33	0.082	1
PIK3CA	Del_2q37.1	0.0821	1
MBD1	Amp_1q21.3	0.0822	1
TMCO4	Amp_1q21.3	0.0822	1
17q-Amp	Amp_1q21.3	0.0822	1
Amp_1q21.3	Del_Xq21.33	0.0822	1
Amp_5p15.33	Del_10q23.31	0.0824	1
22q-Del	9q-Del	0.0826	1
CREBBP	MLL2	0.0827	1
PKHD1	20q-Amp	0.0828	1
20q-Amp	Amp_16p13.2	0.0828	1
MBD1	Amp_1q23.3	0.0829	1
NF1	PTEN	0.0829	1
17q-Amp	Amp_1q23.3	0.0829	1
20q-Amp	Del_11q23.3	0.0829	1
Amp_17q12	Del_16q23.1	0.083	1
MLL	Amp_1p34.2	0.0831	1
PSIP1	5p-Amp	0.0831	1
5p-Amp	7q-Amp	0.0831	1
CDKN2A	RHOB	0.0832	1
KRAS	19q-Amp	0.0836	1
NF2	RB1	0.0836	1
1q-Amp	Del_2q22.1	0.0836	1
19p-Del	Amp_3q26.33	0.0836	1
Amp_6p22.3	Del_16p13.3	0.0836	1
CNOT1	Del_18q23	0.0837	1
FAM47C	7q-Amp	0.0837	1
RAI1	7q-Amp	0.0837	1
Amp_1q21.3	Del_11q25	0.0837	1
ATM	RUNX1	0.0839	1
Amp_10p14	Del_17p12	0.0839	1
15q-Del	Amp_19q13.43	0.0841	1
TSC1	Amp_1p34.2	0.0842	1
ARID1A	Del_6q27	0.0843	1
CTNNB1	FOXA1	0.0844	1
CTNNB1	PTEN	0.0844	1
CTNNB1	THRAP3	0.0844	1
FOXA1	9p-Del	0.0844	1
1q-Amp	9p-Del	0.0844	1
Del_4q22.1	Del_22q13.32	0.0845	1
FAM47C	TP53	0.0848	1
9q-Del	Del_10q23.31	0.0848	1
Amp_3q26.33	Del_5q12.1	0.0848	1
ARID1A	ARID1B	0.0849	1
7p-Amp	Amp_5p15.33	0.0849	1
ERCC2	SHANK1	0.0851	1
ERBB2	IDH1	0.0852	1
NF1	Del_15q13.1	0.0852	1
PARD3	PKHD1	0.0852	1
Amp_1q21.3	Del_6p25.3	0.0852	1
CNNM4	Amp_12q15	0.0853	1
CNNM4	Del_16q23.1	0.0853	1
PIK3CA	RPTN	0.0853	1
14q-Del	Amp_1q21.3	0.0853	1
PKHD1	Amp_16p13.2	0.0855	1
DNAH6	Del_16q23.1	0.0857	1
HES1	SHANK1	0.0857	1
Amp_6q21	Del_14q24.1	0.0857	1
NUDT11	5p-Amp	0.0858	1
Amp_4q13.3	Amp_17q23.3	0.0859	1
3p-Amp	Amp_22q12.2	0.086	1
4q-Del	Del_22q13.32	0.0862	1
SCARF2	ZFP36L1	0.0863	1
KIAA1267	Amp_8q22.3	0.0865	1
NF1	TP53	0.0867	1
TP53	Del_10q23.31	0.0868	1
ZBTB7B	Del_13q14.2	0.0869	1
9p-Del	Del_8p23.3	0.087	1
NF2	PSIP1	0.0871	1
6q-Del	Amp_8p11.21	0.0874	1
Amp_5p15.33	Amp_20q11.21	0.0876	1
TMCO4	Amp_17q12	0.0878	1
20q-Amp	Amp_7p11.2	0.0878	1
8q-Amp	Del_11p15.5	0.0878	1
Amp_17q12	Del_1q32.1	0.0878	1
CSMD3	5p-Amp	0.088	1
NRAS	Amp_1p34.2	0.088	1
5p-Amp	Del_16p13.3	0.088	1
Amp_1q23.3	Del_9p23	0.0883	1
EP300	PKHD1	0.0886	1
16p-Del	Del_4q34.2	0.0886	1
22q-Del	Del_4q34.2	0.0886	1
IDH1	Amp_20q11.21	0.0887	1
14q-Del	Amp_7p21.1	0.0888	1
14q-Del	Del_11q25	0.0888	1
C3orf70	Del_11p15.5	0.0889	1
FAT1	THRAP3	0.0889	1
FAT1	Del_1p36.11	0.0889	1
FOXA1	Del_11q23.3	0.0889	1
METTL3	Del_11p15.5	0.0889	1
Del_1p36.11	Del_11q23.3	0.0889	1
ASXL2	Amp_1q23.3	0.0891	1
RBM10	Del_11p15.5	0.0891	1
Amp_1q23.3	Amp_17q12	0.0891	1
ERBB3	RB1	0.0892	1
Amp_3q26.33	Del_4q34.2	0.0892	1
CNOT1	TSC1	0.0893	1
RAI1	TSC1	0.0893	1
Amp_1q23.3	Del_7q36.3	0.0893	1
CDKN1A	Amp_11q13.3	0.0894	1
Del_10q23.31	Del_19p13.3	0.0894	1
C3orf70	ERBB3	0.0896	1
ERBB3	METTL3	0.0896	1
GNA13	Del_8p23.3	0.0896	1
KIAA1267	SHANK1	0.0896	1
15q-Del	Del_2q22.1	0.0896	1
1q-Amp	Amp_16p13.2	0.0898	1
Amp_7p21.1	Del_6q27	0.0898	1
RHOB	Amp_8p11.21	0.0899	1
Del_10q23.31	Del_11q25	0.0904	1
C3orf70	TMCO4	0.0905	1
CUL1	Del_1q32.1	0.0905	1
8q-Amp	Del_17p12	0.0905	1
Amp_16p13.2	Del_2q34	0.0905	1
ARID1A	Amp_8q22.3	0.0906	1
MLL	Amp_7p11.2	0.0906	1
Amp_5p15.33	Amp_8q22.3	0.0906	1
Amp_7p11.2	Amp_13q22.1	0.0906	1
FOXQ1	Del_17p12	0.0907	1
Del_1p36.11	Del_17p12	0.0907	1
Amp_1q21.3	Del_2q37.1	0.0908	1
Amp_5p15.33	Del_2q34	0.0908	1
Amp_20q11.21	Del_15q13.1	0.0909	1
KDM6A	Del_12p13.1	0.091	1
CNNM4	KDM6A	0.0912	1
Amp_6q21	Del_5q12.1	0.0912	1
19p-Del	Del_16p13.3	0.0915	1
Amp_7p21.1	Del_7q36.3	0.0916	1
ERBB2	TSC1	0.0917	1
Amp_10p14	Del_4q34.2	0.0917	1
CDKN1A	PSIP1	0.0918	1
PSIP1	11q-Del	0.0918	1
PSIP1	5q-Del	0.0918	1
TP53	Amp_13q22.1	0.0918	1
SPTAN1	TXNIP	0.0919	1
ERBB3	22q-Del	0.0922	1
IDH1	KLF5	0.0922	1
CNOT1	CREBBP	0.0923	1
CNOT1	Del_6q27	0.0923	1
RAI1	Del_6q27	0.0923	1
RBM10	Del_6q27	0.0923	1
Del_2q22.1	Del_17p12	0.0923	1
8q-Amp	Amp_19q12	0.0924	1
CSMD3	Amp_19q13.43	0.0925	1
Amp_8p11.23	Amp_19q13.43	0.0925	1
NF1	Del_4q34.2	0.0926	1
STAG2	4q-Del	0.0927	1
4q-Del	Del_16p13.3	0.0927	1
NUDT11	9q-Del	0.0928	1
Del_9p23	Del_12p13.1	0.093	1
MLL2	Del_Xq21.33	0.0931	1
ZFP36L1	Del_13q14.2	0.0932	1
8q-Amp	Del_5q12.1	0.0932	1
DNAH6	Amp_1q21.3	0.0933	1
KLF5	MLL	0.0936	1
7p-Amp	Del_6p25.3	0.0936	1
4q-Del	Amp_13q22.1	0.0936	1
4q-Del	Del_16q23.1	0.0936	1
Amp_1p34.2	Amp_19q13.43	0.0936	1
PARD3	6q-Del	0.0937	1
10q-Del	Del_12p13.1	0.0937	1
ERCC2	RHOB	0.0939	1
19q-Amp	Del_9p23	0.0939	1
17p-Del	Del_13q14.2	0.0939	1
FAM47C	RAI1	0.0943	1
RAI1	RBM10	0.0943	1
7q-Amp	Amp_6p22.3	0.0943	1
7q-Amp	Del_5q12.1	0.0943	1
KDM6A	11q-Del	0.0944	1
Del_1p36.11	Del_2q34	0.0944	1
Amp_8p11.23	Del_11p15.5	0.0945	1
CDKN2A	CUL1	0.0946	1
RHOB	3p-Amp	0.0946	1
17q-Amp	8q-Amp	0.0947	1
16p-Del	Amp_1q23.3	0.0948	1
MLL	ZNF185	0.0949	1
Del_13q14.2	Del_19p13.3	0.0951	1
20q-Amp	Del_8p21.3	0.0952	1
Del_8p21.3	Del_11q23.3	0.0952	1
FOXQ1	RPTN	0.0954	1
NF1	Del_16q23.1	0.0954	1
RPTN	THRAP3	0.0954	1
Del_1p36.11	Del_7q36.3	0.0954	1
NFE2L2	Del_10q23.31	0.0955	1
Amp_19q13.43	Del_6q27	0.0955	1
Amp_19q13.43	Del_11q25	0.0955	1
8p-Del	Del_2q22.1	0.0956	1
20q-Amp	6q-Del	0.0957	1
11p-Del	Del_4q34.2	0.0958	1
DNAH6	5p-Amp	0.0959	1
FAT1	PSIP1	0.0961	1
CUL1	Del_22q13.32	0.0963	1
RB1	Amp_6p22.3	0.0964	1
STAG2	9p-Del	0.0964	1
ERBB2	14q-Del	0.0965	1
Amp_7p21.1	Del_8p21.3	0.0966	1
TP53	TXNIP	0.0967	1
Del_1p36.11	Del_15q13.1	0.0969	1
ASXL2	PLCXD3	0.0973	1
EP300	RB1	0.0973	1
Del_4q22.1	Del_19p13.3	0.0973	1
ARID1A	C3orf70	0.0975	1
ARID1B	Amp_16p13.2	0.0975	1
CUL1	Amp_5p15.33	0.0975	1
7p-Amp	Amp_16p13.2	0.0975	1
3q-Amp	Amp_6p22.3	0.0976	1
10q-Del	Amp_6p22.3	0.0976	1
Amp_4q13.3	Amp_19q12	0.0976	1
Amp_19q12	Del_7q36.3	0.0976	1
CSMD3	ELF3	0.0982	1
MLL3	1q-Amp	0.0982	1
PTEN	Del_2q37.1	0.0982	1
THRAP3	Del_2q37.1	0.0982	1
9q-Del	Amp_1q21.3	0.0984	1
ERBB3	Del_8p21.3	0.0987	1
ELF3	5q-Del	0.0988	1
Amp_17q23.3	Del_19p13.3	0.0988	1
Del_5q12.1	Del_11q23.3	0.0988	1
SHANK1	ZFP36L1	0.0989	1
SHANK1	Amp_22q12.2	0.0989	1
19p-Del	4p-Del	0.0989	1
ERBB3	5p-Amp	0.099	1
CSMD3	RUNX1	0.0991	1
HLA-A	PKHD1	0.0991	1
ERCC2	Del_8p21.3	0.0994	1
IDH1	NFE2L2	0.0994	1
IDH1	Amp_11q22.2	0.0994	1
EP300	Del_Xq21.33	0.0995	1
15q-Del	Amp_1q21.3	0.0996	1
Amp_22q12.2	Del_5q12.1	0.0998	1
CREBBP	TP53	0.0999	1
ELF3	Amp_8p11.21	0.0999	1
TP53	Amp_7p21.1	0.0999	1
Amp_8p11.21	Amp_17q23.3	0.0999	1
Amp_8p11.21	Del_3p14.2	0.0999	1
ARID1A	ERBB2	0.1	1
ELF3	20p-Amp	0.1	1
ERBB2	Amp_7p21.1	0.1	1
ERCC2	Amp_4p16.3	0.1	1
MBD1	SHANK1	0.1	1
MBD1	Del_8p21.3	0.1	1
Amp_19q12	Del_6q27	0.1	1
C3orf70	Del_18q23	0.101	1
FAT1	PIK3CA	0.101	1
PIK3CA	Del_3p14.2	0.101	1
3p-Amp	8q-Amp	0.101	1
3p-Amp	Del_18q23	0.101	1
Amp_1p34.2	Del_16p13.3	0.101	1
Amp_17q23.3	Del_12p13.1	0.101	1
Del_6p25.3	Del_11p15.5	0.101	1
ATM	Amp_8q22.3	0.102	1
ERBB3	Amp_5p15.33	0.102	1
RBM10	5p-Amp	0.102	1
TP53	Amp_8q22.3	0.102	1
8q-Amp	Del_12p13.1	0.102	1
22q-Del	Amp_4p16.3	0.102	1
Amp_1q23.3	Del_16q23.1	0.102	1
Amp_8q22.3	Del_4q34.2	0.102	1
ARID1A	CTNNB1	0.103	1
ARID1A	FOXA1	0.103	1
C3orf70	MLL	0.103	1
CDKN1A	Del_5q12.1	0.103	1
CUL1	Del_16q23.1	0.103	1
ERBB3	Amp_20q11.21	0.103	1
FBXW7	11q-Del	0.103	1
KIAA1267	Amp_1q21.3	0.103	1
NRAS	Del_8p23.3	0.103	1
NUDT11	Del_8p23.3	0.103	1
PTEN	Amp_5p15.33	0.103	1
ZFP36L1	Amp_1p34.2	0.103	1
3p-Amp	Amp_13q22.1	0.103	1
3p-Amp	Del_16q23.1	0.103	1
15q-Del	Amp_6q21	0.103	1
15q-Del	Del_2q34	0.103	1
METTL3	14q-Del	0.104	1
METTL3	4p-Del	0.104	1
NF1	SPTAN1	0.104	1
TP53	Del_2q22.1	0.104	1
Amp_1q21.3	Amp_17q12	0.104	1
Amp_3p25.2	Amp_19q13.43	0.104	1
ATM	Del_9p21.3	0.105	1
ERCC2	8q-Amp	0.105	1
NRAS	Del_15q13.1	0.105	1
NUDT11	10q-Del	0.105	1
PARD3	RAI1	0.105	1
PLCXD3	TP53	0.105	1
TXNIP	Del_3p14.2	0.105	1
20q-Amp	18q-Del	0.105	1
3q-Amp	Amp_1q21.3	0.105	1
14q-Del	Amp_8p11.21	0.105	1
14q-Del	Del_2q22.1	0.105	1
Amp_3q26.33	Amp_20q11.21	0.105	1
Amp_11q22.2	Del_8p23.3	0.105	1
Amp_20q11.21	Del_11p15.5	0.105	1
ATM	MLL	0.106	1
ATM	THRAP3	0.106	1
ATM	1q-Amp	0.106	1
DNAH6	Amp_1p34.2	0.106	1
ERCC2	MLL	0.106	1
ERCC2	Amp_12q15	0.106	1
KDM6A	Amp_8p11.21	0.106	1
PKHD1	Amp_4q13.3	0.106	1
PKHD1	Del_7q36.3	0.106	1
TMCO4	Del_9p23	0.106	1
Del_1q32.1	Del_9p23	0.106	1
Del_4q34.2	Del_6p25.3	0.106	1
ASXL2	RUNX1	0.107	1
CTNNB1	HRAS	0.107	1
FAM47C	Amp_8p11.21	0.107	1
FOXA1	HRAS	0.107	1
IDH1	ZFP36L1	0.107	1
METTL3	11p-Del	0.107	1
MLL2	SHANK1	0.107	1
RAI1	Del_2q22.1	0.107	1
20p-Amp	18q-Del	0.107	1
3q-Amp	6q-Del	0.107	1
Amp_8p11.23	Del_19p13.3	0.107	1
Del_16p13.3	Del_19p13.3	0.107	1
ARID1A	16p-Del	0.108	1
ASXL2	MLL2	0.108	1
ATM	IDH1	0.108	1
RPTN	Amp_4q13.3	0.108	1
RXRA	Amp_5p15.33	0.108	1
19q-Amp	Del_7q36.3	0.108	1
11p-Del	Amp_3q26.33	0.108	1
11p-Del	Del_10q23.31	0.108	1
Amp_4q13.3	Del_7q36.3	0.108	1
Amp_8q22.3	Amp_17q12	0.108	1
CDKN2A	SHANK1	0.109	1
ERBB3	Del_16p13.3	0.109	1
FAM47C	MLL2	0.109	1
KIAA1267	Del_16q23.1	0.109	1
Amp_6q21	Amp_13q22.1	0.109	1
Amp_16p13.2	Del_16q23.1	0.109	1
Del_11q25	Del_12p13.1	0.109	1
CSMD3	KIAA1267	0.11	1
MBD1	Amp_4p16.3	0.11	1
MLL	Amp_3p25.2	0.11	1
RXRA	STAG2	0.11	1
SPTAN1	3p-Amp	0.11	1
TP53	14q-Del	0.11	1
3p-Amp	Amp_7p11.2	0.11	1
4q-Del	Del_9p21.3	0.11	1
Amp_17q12	Del_13q14.2	0.11	1
ATM	STAG2	0.111	1
CNNM4	Amp_19q12	0.111	1
ELF3	20q-Amp	0.111	1
EP300	Amp_3p25.2	0.111	1
HLA-A	TSC1	0.111	1
IDH1	Amp_8q22.3	0.111	1
MLL2	4p-Del	0.111	1
NUDT11	9p-Del	0.111	1
RB1	UNC93B1	0.111	1
TSC1	Del_18q23	0.111	1
20p-Amp	Amp_7p21.1	0.111	1
11p-Del	Amp_3p25.2	0.111	1
Amp_19q13.43	Del_9p23	0.111	1
Del_2q22.1	Del_8p23.3	0.111	1
Del_11p15.5	Del_12p13.1	0.111	1
CNNM4	Amp_1q23.3	0.112	1
CNNM4	Amp_3p25.2	0.112	1
CNOT1	HES1	0.112	1
CTNNB1	Amp_19q13.43	0.112	1
HES1	RBM10	0.112	1
NRAS	Del_8p21.3	0.112	1
PTEN	Del_10q23.31	0.112	1
THRAP3	Del_10q23.31	0.112	1
1q-Amp	Amp_11q13.3	0.112	1
8q-Amp	Amp_7p11.2	0.112	1
Amp_3q26.33	Del_1p36.11	0.112	1
Amp_7p21.1	Del_2q22.1	0.112	1
Amp_8q22.3	Del_14q24.1	0.112	1
ARID1A	Amp_8p11.23	0.113	1
PIK3CA	TXNIP	0.113	1
3q-Amp	Del_17p12	0.113	1
11p-Del	19p-Del	0.113	1
Amp_1q21.3	Del_2q22.1	0.113	1
Amp_3q26.33	Amp_22q12.2	0.113	1
Amp_11q13.3	Del_17p12	0.113	1
EP300	ERCC2	0.114	1
RHOB	Amp_3p25.2	0.114	1
20p-Amp	Amp_8q22.3	0.114	1
4q-Del	Del_2q37.1	0.114	1
Amp_1q21.3	Amp_5p15.33	0.114	1
Amp_6p22.3	Del_4q22.1	0.114	1
Amp_8q22.3	Del_22q13.32	0.114	1
ASXL2	RAI1	0.115	1
EP300	Del_2q22.1	0.115	1
ERBB2	ZNF185	0.115	1
ERBB3	Del_2q37.1	0.115	1
GNA13	Del_13q14.2	0.115	1
KIAA1267	PSIP1	0.115	1
MBD1	Del_13q14.2	0.115	1
METTL3	Amp_6p22.3	0.115	1
NF1	TXNIP	0.115	1
NFE2L2	9p-Del	0.115	1
RB1	Del_8p21.3	0.115	1
RPTN	Del_15q13.1	0.115	1
RXRA	15q-Del	0.115	1
TMCO4	Del_13q14.2	0.115	1
ZBTB7B	Amp_7p11.2	0.115	1
7q-Amp	Amp_11q22.2	0.115	1
11p-Del	Amp_8p11.21	0.115	1
11p-Del	Del_2q22.1	0.115	1
22q-Del	9p-Del	0.115	1
9p-Del	Del_8p21.3	0.115	1
9q-Del	Del_3p14.2	0.115	1
Amp_4q13.3	Del_15q13.1	0.115	1
Amp_6q21	Amp_7p11.2	0.115	1
Amp_20q11.21	Del_3p14.2	0.115	1
Del_13q14.2	Del_Xq21.33	0.115	1
Del_16q23.1	Del_17p12	0.115	1
BCL2L1	11p-Del	0.116	1
BCL2L1	17p-Del	0.116	1
HLA-A	Del_9p21.3	0.116	1
KDM6A	Del_4q34.2	0.116	1
NRAS	Amp_19q13.43	0.116	1
ARID1B	CNOT1	0.117	1
ARID1B	TSC1	0.117	1
ATM	PSIP1	0.117	1
CNOT1	KLF5	0.117	1
ERCC2	7q-Amp	0.117	1
ERCC2	Amp_7p11.2	0.117	1
FAM47C	7p-Amp	0.117	1
PSIP1	Del_4q34.2	0.117	1
7q-Amp	Del_4q34.2	0.117	1
4p-Del	Del_14q24.1	0.117	1
4q-Del	Del_9p23	0.117	1
Amp_3q26.33	Del_4q22.1	0.117	1
ARID1A	RAI1	0.118	1
ARID1A	Amp_8p11.21	0.118	1
CSMD3	NF1	0.118	1
CTNNB1	Amp_3p25.2	0.118	1
ELF3	Del_9p23	0.118	1
FBXW7	Del_6q27	0.118	1
FGFR3	Amp_4p16.3	0.118	1
FOXA1	Amp_3p25.2	0.118	1
SPTAN1	22q-Del	0.118	1
5p-Amp	Del_13q14.2	0.118	1
Amp_12q15	Del_8p23.3	0.118	1
Amp_13q22.1	Del_14q24.1	0.118	1
Amp_16p13.2	Amp_19q13.43	0.118	1
Del_11q23.3	Del_18q23	0.118	1
Del_14q24.1	Del_16q23.1	0.118	1
ATM	SPTAN1	0.119	1
DNAH6	ERBB2	0.119	1
ERBB2	TXNIP	0.119	1
HLA-A	NUDT11	0.119	1
PTEN	3p-Amp	0.119	1
RHOA	Amp_3p25.2	0.119	1
RHOB	9q-Del	0.119	1
SHANK1	Amp_3p25.2	0.119	1
Amp_1q23.3	Amp_5p15.33	0.119	1
CNNM4	KIAA1267	0.12	1
CNNM4	16p-Del	0.12	1
CNNM4	22q-Del	0.12	1
DNAH6	Amp_4q13.3	0.12	1
ERBB3	TMCO4	0.12	1
FOXA1	11q-Del	0.12	1
FOXA1	Del_19p13.3	0.12	1
GNA13	Del_5q12.1	0.12	1
KIAA1267	NF2	0.12	1
NF2	16p-Del	0.12	1
PKHD1	Del_5q12.1	0.12	1
PSIP1	Del_1q32.1	0.12	1
RXRA	SF1	0.12	1
SF1	16p-Del	0.12	1
SF1	Amp_11q22.2	0.12	1
SF1	Del_8p23.3	0.12	1
TMCO4	15q-Del	0.12	1
TSC1	11p-Del	0.12	1
3p-Amp	Amp_8q22.3	0.12	1
9q-Del	Del_Xq21.33	0.12	1
Del_5q12.1	Del_Xq21.33	0.12	1
MLL3	Amp_4p16.3	0.121	1
NFE2L2	3q-Amp	0.121	1
RUNX1	8q-Amp	0.121	1
8q-Amp	Del_Xp11.3	0.121	1
Amp_4p16.3	Del_2q37.1	0.121	1
Del_18q23	Del_Xp11.3	0.121	1
ASXL2	Del_17p12	0.122	1
CDKN1A	Del_12p13.1	0.122	1
CSMD3	8q-Amp	0.122	1
CUL1	Amp_1p34.2	0.122	1
ERCC2	Del_4q34.2	0.122	1
HES1	PARD3	0.122	1
NRAS	5q-Del	0.122	1
NUDT11	11q-Del	0.122	1
PARD3	ZBTB7B	0.122	1
RB1	Del_2q37.1	0.122	1
RBM10	Del_2q34	0.122	1
UNC93B1	Del_19p13.3	0.122	1
19q-Amp	Del_9p21.3	0.122	1
8q-Amp	Del_16p13.3	0.122	1
BCL2L1	5p-Amp	0.123	1
DNAH6	Amp_1q23.3	0.123	1
EP300	TP53	0.123	1
SPTAN1	11p-Del	0.123	1
3q-Amp	Del_16q23.1	0.123	1
5p-Amp	Amp_19q12	0.123	1
Amp_3p25.2	Del_19p13.3	0.123	1
Amp_13q22.1	Del_15q13.1	0.123	1
Amp_17q12	Del_8p21.3	0.123	1
Del_7q36.3	Del_17p12	0.123	1
ARID1A	Del_4q34.2	0.124	1
CSMD3	IDH1	0.124	1
ERBB2	Amp_8p11.21	0.124	1
FGFR3	1q-Amp	0.124	1
FOXA1	STAG2	0.124	1
IDH1	STAG2	0.124	1
MLL	Amp_7p21.1	0.124	1
MLL2	NF2	0.124	1
NF1	Amp_17q23.3	0.124	1
NF1	Del_3p14.2	0.124	1
RHOA	Del_18q23	0.124	1
4p-Del	Del_9p23	0.124	1
Amp_3q26.33	Del_16p13.3	0.124	1
Amp_7p21.1	Amp_13q22.1	0.124	1
Amp_8p11.23	Amp_19q12	0.124	1
Amp_16p13.2	Amp_22q12.2	0.124	1
PSIP1	Amp_11q13.3	0.125	1
RUNX1	TP53	0.125	1
ZFP36L1	Del_6p25.3	0.125	1
20q-Amp	Amp_19q13.43	0.125	1
8p-Del	Amp_10p14	0.125	1
Amp_13q22.1	Amp_22q12.2	0.125	1
GNA13	8p-Del	0.126	1
MBD1	8p-Del	0.126	1
MLL	MLL2	0.126	1
PSIP1	Del_14q24.1	0.126	1
RPTN	Del_2q37.1	0.126	1
3p-Amp	Amp_17q23.3	0.126	1
7q-Amp	Del_14q24.1	0.126	1
19p-Del	Del_13q14.2	0.126	1
8p-Del	Amp_17q23.3	0.126	1
Amp_3p25.2	Amp_7p11.2	0.126	1
Amp_4p16.3	Del_Xp11.3	0.126	1
ATM	Amp_3p25.2	0.127	1
ELF3	ZBTB7B	0.127	1
4q-Del	Del_6q27	0.127	1
ASXL2	NUDT11	0.128	1
CNNM4	ZFP36L1	0.128	1
ERBB2	Amp_1p34.2	0.128	1
Amp_1q23.3	Del_10q23.31	0.128	1
Amp_19q13.43	Del_18q23	0.128	1
ATM	Del_13q14.2	0.129	1
CNOT1	KIAA1267	0.129	1
CSMD3	MLL3	0.129	1
EP300	4q-Del	0.129	1
FAM47C	NFE2L2	0.129	1
HES1	MLL3	0.129	1
HES1	Del_2q37.1	0.129	1
MLL3	Amp_6q21	0.129	1
RBM10	16p-Del	0.129	1
ZFP36L1	Del_16p13.3	0.129	1
20q-Amp	11p-Del	0.129	1
5q-Del	Amp_8p11.21	0.129	1
9p-Del	Amp_19q13.43	0.129	1
ATM	Del_7q36.3	0.13	1
BCL2L1	Del_5q12.1	0.13	1
CREBBP	Del_5q12.1	0.13	1
MBD1	RAI1	0.13	1
PKHD1	5q-Del	0.13	1
PKHD1	Del_8p23.3	0.13	1
RAI1	17q-Amp	0.13	1
RAI1	Del_1q32.1	0.13	1
RAI1	Del_Xq21.33	0.13	1
RPTN	Del_4q34.2	0.13	1
4q-Del	Del_12p13.1	0.13	1
9q-Del	Del_6q27	0.13	1
Amp_1q21.3	Del_11q23.3	0.13	1
Amp_4q13.3	Del_4q34.2	0.13	1
Amp_20q11.21	Del_18q23	0.13	1
Del_5q12.1	Del_11q25	0.13	1
ARID1B	HES1	0.131	1
ARID1B	Amp_6q21	0.131	1
CTNNB1	SHANK1	0.131	1
FOXA1	RHOA	0.131	1
HES1	KLF5	0.131	1
KDM6A	PTEN	0.131	1
KDM6A	THRAP3	0.131	1
KLF5	ZBTB7B	0.131	1
MBD1	Amp_10p14	0.131	1
SHANK1	SPTAN1	0.131	1
SHANK1	Del_1p36.11	0.131	1
20q-Amp	Del_8p23.3	0.131	1
Amp_10p14	Del_1q32.1	0.131	1
ASXL2	Del_12p13.1	0.132	1
C3orf70	NF1	0.132	1
EP300	MLL3	0.132	1
ERBB3	20q-Amp	0.132	1
MLL2	Del_4q22.1	0.132	1
MLL3	20p-Amp	0.132	1
SF1	Del_8p21.3	0.132	1
Amp_19q13.43	Del_7q36.3	0.132	1
Amp_20q11.21	Del_6q27	0.132	1
Amp_20q11.21	Del_11q25	0.132	1
Del_9p23	Del_19p13.3	0.132	1
CREBBP	CUL1	0.133	1
CUL1	RPTN	0.133	1
CUL1	19q-Amp	0.133	1
DNAH6	6q-Del	0.133	1
FAT1	HRAS	0.133	1
HRAS	20q-Amp	0.133	1
KDM6A	ZBTB7B	0.133	1
METTL3	Del_6q27	0.133	1
PLCXD3	Del_16q23.1	0.133	1
SCARF2	6q-Del	0.133	1
SCARF2	Del_15q13.1	0.133	1
TXNIP	3q-Amp	0.133	1
TXNIP	Del_11q23.3	0.133	1
3p-Amp	Amp_7p21.1	0.133	1
3p-Amp	Del_11q25	0.133	1
10q-Del	Amp_3q26.33	0.133	1
6q-Del	Amp_3q26.33	0.133	1
Amp_11q13.3	Del_15q13.1	0.133	1
ERBB2	Amp_17q12	0.134	1
ERCC2	5p-Amp	0.134	1
GNA13	Amp_12q15	0.134	1
GNA13	Del_6p25.3	0.134	1
MLL2	RUNX1	0.134	1
SPTAN1	3q-Amp	0.134	1
TMCO4	Del_16q23.1	0.134	1
Amp_1q21.3	Del_3p14.2	0.134	1
Amp_4p16.3	Del_22q13.32	0.134	1
Amp_6q21	Amp_7p21.1	0.134	1
Del_1q32.1	Del_16q23.1	0.134	1
Del_6p25.3	Del_Xq21.33	0.134	1
Del_16q23.1	Del_Xq21.33	0.134	1
ARID1A	Del_8p21.3	0.135	1
EP300	FGFR3	0.135	1
UNC93B1	Del_4q22.1	0.135	1
20p-Amp	Del_2q22.1	0.135	1
4q-Del	Del_11p15.5	0.135	1
BCL2L1	FOXA1	0.136	1
ELF3	KIAA1267	0.136	1
1q-Amp	Del_4q22.1	0.136	1
6q-Del	Amp_5p15.33	0.136	1
Amp_5p15.33	Del_15q13.1	0.136	1
Amp_12q15	Amp_19q12	0.136	1
Amp_19q12	Del_16q23.1	0.136	1
Del_6p25.3	Del_9p23	0.136	1
Del_8p23.3	Del_11q25	0.136	1
ASXL2	PIK3CA	0.137	1
CDKN2A	CNNM4	0.137	1
CDKN2A	NF2	0.137	1
RPTN	Del_10q23.31	0.137	1
20q-Amp	Amp_19q12	0.137	1
9q-Del	Del_4q22.1	0.137	1
Amp_4q13.3	Del_10q23.31	0.137	1
Amp_7p21.1	Del_2q37.1	0.137	1
Amp_10p14	Amp_17q23.3	0.137	1
Del_7q36.3	Del_10q23.31	0.137	1
ARID1A	Amp_4q13.3	0.138	1
EP300	Amp_19q13.43	0.138	1
FBXW7	IDH1	0.138	1
IDH1	Amp_1p34.2	0.138	1
PSIP1	RUNX1	0.138	1
8q-Amp	Del_8p23.3	0.138	1
11q-Del	4q-Del	0.138	1
4q-Del	Del_19p13.3	0.138	1
9q-Del	Del_12p13.1	0.138	1
Amp_13q22.1	Amp_20q11.21	0.138	1
Amp_20q11.21	Del_16q23.1	0.138	1
ATM	FAM47C	0.139	1
ATM	RAI1	0.139	1
CDKN2A	7q-Amp	0.139	1
RHOB	7q-Amp	0.139	1
TP53	Del_2q37.1	0.139	1
10q-Del	9q-Del	0.139	1
Amp_10p14	Amp_17q12	0.139	1
Amp_12q15	Del_16p13.3	0.139	1
5p-Amp	Del_Xp11.3	0.14	1
Amp_6q21	Amp_19q12	0.14	1
Amp_16p13.2	Amp_17q23.3	0.14	1
ATM	CNNM4	0.141	1
NF1	14q-Del	0.141	1
PTEN	Amp_6p22.3	0.141	1
SPTAN1	TMCO4	0.141	1
20p-Amp	Amp_19q13.43	0.141	1
20q-Amp	11q-Del	0.141	1
20q-Amp	5q-Del	0.141	1
7q-Amp	Amp_8p11.23	0.141	1
19p-Del	Amp_10p14	0.141	1
22q-Del	Amp_6q21	0.141	1
Amp_7p11.2	Del_8p23.3	0.141	1
Del_7q36.3	Del_19p13.3	0.141	1
ASXL2	Amp_16p13.2	0.142	1
CDKN2A	MLL	0.142	1
CDKN2A	Del_16q23.1	0.142	1
MLL	RHOB	0.142	1
PKHD1	Amp_17q12	0.142	1
4q-Del	Amp_3p25.2	0.142	1
ARID1A	Amp_12q15	0.143	1
ASXL2	Amp_3p25.2	0.143	1
MLL2	ZNF185	0.143	1
1q-Amp	Amp_4p16.3	0.143	1
6q-Del	Amp_1q23.3	0.143	1
Amp_1q23.3	Del_15q13.1	0.143	1
Del_9p23	Del_Xp11.3	0.143	1
CNNM4	PLCXD3	0.144	1
ERCC2	MLL3	0.144	1
KIAA1267	PARD3	0.144	1
KIAA1267	Del_9p23	0.144	1
NF2	PLCXD3	0.144	1
RXRA	Del_12p13.1	0.144	1
16p-Del	Amp_19q13.43	0.144	1
Amp_5p15.33	Amp_11q13.3	0.144	1
Amp_11q22.2	Amp_19q13.43	0.144	1
Amp_11q22.2	Del_12p13.1	0.144	1
Del_6p25.3	Del_8p21.3	0.144	1
CTNNB1	ERCC2	0.145	1
EP300	Amp_1p34.2	0.145	1
EP300	Del_2q34	0.145	1
MBD1	ZNF185	0.145	1
RBM10	18q-Del	0.145	1
20q-Amp	Del_9p21.3	0.145	1
7p-Amp	Amp_8p11.21	0.145	1
Amp_8q22.3	Del_2q37.1	0.145	1
Amp_8q22.3	Del_13q14.2	0.145	1
Del_5q12.1	Del_13q14.2	0.145	1
CREBBP	KIAA1267	0.146	1
FOXQ1	Amp_1q21.3	0.146	1
IDH1	NF1	0.146	1
TP53	Amp_8p11.23	0.146	1
20p-Amp	Del_22q13.32	0.146	1
5p-Amp	7p-Amp	0.146	1
11p-Del	Amp_20q11.21	0.146	1
16p-Del	Del_11q25	0.146	1
22q-Del	Del_11q25	0.146	1
8p-Del	Del_12p13.1	0.146	1
CNOT1	Amp_3q26.33	0.147	1
FAM47C	Amp_11q13.3	0.147	1
KDM6A	KIAA1267	0.147	1
NRAS	18q-Del	0.147	1
NRAS	Del_14q24.1	0.147	1
20q-Amp	Del_22q13.32	0.147	1
3p-Amp	Amp_10p14	0.147	1
Amp_1p34.2	Amp_1q23.3	0.147	1
Del_11q23.3	Del_22q13.32	0.147	1
CSMD3	Amp_6p22.3	0.148	1
FAT1	Amp_1p34.2	0.148	1
KDM6A	Amp_19q13.43	0.148	1
MLL3	15q-Del	0.148	1
PSIP1	Del_2q37.1	0.148	1
SHANK1	Del_3p14.2	0.148	1
TSC1	ZFP36L1	0.148	1
15q-Del	Del_2q37.1	0.148	1
Amp_6p22.3	Amp_8p11.23	0.148	1
Amp_17q23.3	Del_4q34.2	0.148	1
ARID1A	FBXW7	0.149	1
ARID1A	TMCO4	0.149	1
C3orf70	TXNIP	0.149	1
DNAH6	METTL3	0.149	1
FAM47C	Del_Xp11.3	0.149	1
MBD1	RB1	0.149	1
MBD1	Amp_5p15.33	0.149	1
NF1	Amp_1q21.3	0.149	1
TMCO4	Amp_5p15.33	0.149	1
19q-Amp	Amp_8q22.3	0.149	1
Amp_3q26.33	Del_14q24.1	0.149	1
ERCC2	Del_8p23.3	0.15	1
FGFR3	Del_17p12	0.15	1
HES1	Amp_3p25.2	0.15	1
MLL	MLL3	0.15	1
MLL2	Amp_7p11.2	0.15	1
3p-Amp	Amp_8p11.21	0.15	1
5q-Del	Amp_20q11.21	0.15	1
9q-Del	Amp_1q23.3	0.15	1
Amp_4q13.3	Amp_17q12	0.15	1
ERBB2	SPTAN1	0.151	1
HES1	ZFP36L1	0.151	1
NF1	SHANK1	0.151	1
SHANK1	Amp_1q21.3	0.151	1
Amp_1p34.2	Amp_8q22.3	0.151	1
Amp_5p15.33	Del_2q37.1	0.151	1
Amp_6q21	Amp_22q12.2	0.151	1
Amp_19q12	Amp_20q11.21	0.151	1
Del_1p36.11	Del_18q23	0.151	1
ARID1B	TMCO4	0.152	1
CDKN1A	Del_2q34	0.152	1
CDKN2A	6q-Del	0.152	1
CNOT1	PIK3CA	0.152	1
EP300	22q-Del	0.152	1
FAM47C	PIK3CA	0.152	1
FGFR3	19q-Amp	0.152	1
KLF5	MBD1	0.152	1
KLF5	17q-Amp	0.152	1
KLF5	Del_Xq21.33	0.152	1
MLL3	Amp_1q21.3	0.152	1
PIK3CA	RBM10	0.152	1
RHOB	3q-Amp	0.152	1
RHOB	Amp_1q21.3	0.152	1
RPTN	Amp_8p11.23	0.152	1
TMCO4	4q-Del	0.152	1
19q-Amp	Amp_8p11.23	0.152	1
7p-Amp	Del_Xq21.33	0.152	1
11p-Del	22q-Del	0.152	1
Amp_4q13.3	Amp_8p11.23	0.152	1
Del_2q34	Del_19p13.3	0.152	1
C3orf70	10q-Del	0.153	1
CUL1	3q-Amp	0.153	1
CUL1	10q-Del	0.153	1
ERCC2	PARD3	0.153	1
ERCC2	Amp_7p21.1	0.153	1
ERCC2	Del_6q27	0.153	1
METTL3	6q-Del	0.153	1
SHANK1	Del_13q14.2	0.153	1
Amp_1q21.3	Del_12p13.1	0.153	1
Del_1p36.11	Del_14q24.1	0.153	1
Del_22q13.32	Del_Xp11.3	0.153	1
FGFR3	20q-Amp	0.154	1
IDH1	Amp_16p13.2	0.154	1
KLF5	Del_13q14.2	0.154	1
STAG2	10q-Del	0.154	1
20q-Amp	Amp_3p25.2	0.154	1
3q-Amp	Amp_8p11.23	0.154	1
14q-Del	Amp_16p13.2	0.154	1
19p-Del	Amp_1q23.3	0.154	1
4q-Del	Del_13q14.2	0.154	1
Amp_13q22.1	Amp_19q13.43	0.154	1
ARID1A	Amp_3p25.2	0.155	1
ARID1B	20q-Amp	0.155	1
CNNM4	PIK3CA	0.155	1
Amp_1q21.3	Del_18q23	0.155	1
CDKN1A	Amp_11q22.2	0.156	1
ELF3	MBD1	0.156	1
ELF3	18q-Del	0.156	1
ERBB2	NFE2L2	0.156	1
ERCC2	STAG2	0.156	1
FOXA1	7q-Amp	0.156	1
KDM6A	RAI1	0.156	1
KRAS	ZNF185	0.156	1
NFE2L2	Del_19p13.3	0.156	1
PSIP1	THRAP3	0.156	1
PSIP1	1q-Amp	0.156	1
RUNX1	ZNF185	0.156	1
RXRA	Del_19p13.3	0.156	1
THRAP3	7q-Amp	0.156	1
THRAP3	15q-Del	0.156	1
17q-Amp	Del_3p14.2	0.156	1
16p-Del	Amp_19q12	0.156	1
16p-Del	Del_19p13.3	0.156	1
Amp_17q23.3	Del_1q32.1	0.156	1
Amp_17q23.3	Del_Xq21.33	0.156	1
Del_3p14.2	Del_Xq21.33	0.156	1
ELF3	3q-Amp	0.157	1
SHANK1	Del_6q27	0.157	1
20p-Amp	5q-Del	0.157	1
ARID1A	Del_2q34	0.158	1
C3orf70	FAT1	0.158	1
EP300	FOXQ1	0.158	1
EP300	PTEN	0.158	1
METTL3	Del_11q23.3	0.158	1
MLL3	TXNIP	0.158	1
NRAS	Amp_6p22.3	0.158	1
PLCXD3	ZBTB7B	0.158	1
PLCXD3	Amp_6q21	0.158	1
18q-Del	Amp_1q23.3	0.158	1
Amp_1p34.2	Amp_4p16.3	0.158	1
Amp_7p11.2	Del_13q14.2	0.158	1
ARID1B	RXRA	0.159	1
BCL2L1	MLL3	0.159	1
CNNM4	Amp_8p11.23	0.159	1
KLF5	NFE2L2	0.159	1
NF2	STAG2	0.159	1
NFE2L2	4q-Del	0.159	1
SF1	STAG2	0.159	1
TXNIP	Del_17p12	0.159	1
3q-Amp	Del_8p23.3	0.159	1
7p-Amp	Amp_11q22.2	0.159	1
22q-Del	4q-Del	0.159	1
Amp_17q23.3	Del_9p21.3	0.159	1
CDKN1A	Del_9p21.3	0.16	1
ERBB3	UNC93B1	0.16	1
PSIP1	Amp_1q23.3	0.16	1
19q-Amp	Amp_4p16.3	0.16	1
20p-Amp	Amp_12q15	0.16	1
Amp_4p16.3	Del_7q36.3	0.16	1
MLL	RUNX1	0.161	1
MLL	14q-Del	0.161	1
RUNX1	Del_12p13.1	0.161	1
RUNX1	Del_16q23.1	0.161	1
RXRA	Del_11p15.5	0.161	1
SHANK1	Amp_8q22.3	0.161	1
SHANK1	Del_5q12.1	0.161	1
7p-Amp	Del_4q22.1	0.161	1
14q-Del	Amp_20q11.21	0.161	1
14q-Del	Del_6p25.3	0.161	1
16p-Del	Del_11p15.5	0.161	1
Amp_1q21.3	Amp_8p11.23	0.161	1
Amp_3q26.33	Amp_17q23.3	0.161	1
Amp_12q15	Del_Xp11.3	0.161	1
Del_6p25.3	Del_Xp11.3	0.161	1
ASXL2	19p-Del	0.162	1
5p-Amp	Amp_8p11.23	0.162	1
Amp_1q23.3	Amp_6q21	0.162	1
CDKN1A	TXNIP	0.163	1
CTNNB1	Amp_1q23.3	0.163	1
FBXW7	Del_8p23.3	0.163	1
FOXQ1	Amp_1q23.3	0.163	1
KIAA1267	TMCO4	0.163	1
KIAA1267	Del_1q32.1	0.163	1
MBD1	16p-Del	0.163	1
RHOA	TXNIP	0.163	1
THRAP3	Amp_1q23.3	0.163	1
17q-Amp	16p-Del	0.163	1
7p-Amp	Del_5q12.1	0.163	1
22q-Del	Del_1q32.1	0.163	1
22q-Del	Del_Xq21.33	0.163	1
Amp_13q22.1	Del_11q23.3	0.163	1
C3orf70	METTL3	0.164	1
CUL1	TSC1	0.164	1
FBXW7	NF2	0.164	1
KDM6A	MLL3	0.164	1
MBD1	Del_6q27	0.164	1
SF1	Amp_1p34.2	0.164	1
20p-Amp	Del_11p15.5	0.164	1
5p-Amp	Del_2q37.1	0.164	1
18q-Del	Del_12p13.1	0.164	1
18q-Del	Del_13q14.2	0.164	1
8p-Del	Del_6p25.3	0.164	1
9q-Del	Del_2q22.1	0.164	1
Amp_7p21.1	Del_Xq21.33	0.164	1
Del_1q32.1	Del_11q25	0.164	1
Del_2q22.1	Del_5q12.1	0.164	1
Del_11q25	Del_Xq21.33	0.164	1
ARID1A	RB1	0.165	1
CNOT1	CSMD3	0.165	1
DNAH6	Amp_11q13.3	0.165	1
DNAH6	Del_10q23.31	0.165	1
KDM6A	SHANK1	0.165	1
MLL	15q-Del	0.165	1
NF2	TP53	0.165	1
PLCXD3	Amp_8p11.21	0.165	1
PLCXD3	Del_2q22.1	0.165	1
PSIP1	Del_16q23.1	0.165	1
SPTAN1	Amp_8p11.21	0.165	1
7q-Amp	Amp_12q15	0.165	1
7q-Amp	Del_6p25.3	0.165	1
8q-Amp	Amp_17q12	0.165	1
4q-Del	Del_2q34	0.165	1
Amp_3p25.2	Del_4q22.1	0.165	1
ERBB2	SHANK1	0.166	1
RHOA	Amp_19q12	0.166	1
TSC1	Del_11p15.5	0.166	1
ZFP36L1	8q-Amp	0.166	1
15q-Del	Del_9p21.3	0.166	1
Amp_20q11.21	Del_9p21.3	0.166	1
Amp_22q12.2	Del_18q23	0.166	1
MBD1	MLL3	0.167	1
MBD1	Del_2q37.1	0.167	1
MLL3	TMCO4	0.167	1
MLL3	Del_1q32.1	0.167	1
MLL3	Del_Xq21.33	0.167	1
NF2	UNC93B1	0.167	1
NFE2L2	Del_2q22.1	0.167	1
NRAS	SF1	0.167	1
Amp_7p21.1	Del_3p14.2	0.167	1
Amp_8p11.21	Amp_11q22.2	0.167	1
Amp_22q12.2	Del_11q25	0.167	1
Del_1q32.1	Del_2q37.1	0.167	1
ASXL2	KIAA1267	0.168	1
FAT1	NF1	0.168	1
RBM10	14q-Del	0.168	1
CNOT1	THRAP3	0.169	1
CUL1	RB1	0.169	1
ERCC2	PKHD1	0.169	1
ERCC2	Amp_4q13.3	0.169	1
FAM47C	FOXQ1	0.169	1
FAM47C	THRAP3	0.169	1
METTL3	9p-Del	0.169	1
PTEN	RBM10	0.169	1
3p-Amp	9p-Del	0.169	1
CREBBP	10q-Del	0.17	1
NF1	Amp_4p16.3	0.17	1
SPTAN1	Del_Xp11.3	0.17	1
TP53	3q-Amp	0.17	1
TP53	10q-Del	0.17	1
3q-Amp	Del_6q27	0.17	1
11q-Del	Amp_1q21.3	0.17	1
11q-Del	Amp_12q15	0.17	1
5q-Del	Del_6p25.3	0.17	1
6q-Del	Amp_7p21.1	0.17	1
Amp_1q21.3	Del_19p13.3	0.17	1
Amp_4p16.3	Amp_20q11.21	0.17	1
Amp_7p21.1	Del_15q13.1	0.17	1
Amp_7p11.2	Del_8p21.3	0.17	1
Amp_13q22.1	Del_19p13.3	0.17	1
Amp_19q13.43	Del_10q23.31	0.17	1
Del_16q23.1	Del_19p13.3	0.17	1
ATM	Amp_11q13.3	0.171	1
ERBB3	FOXA1	0.171	1
IDH1	19p-Del	0.171	1
PARD3	Del_10q23.31	0.171	1
RB1	Amp_17q12	0.171	1
14q-Del	Amp_6q21	0.171	1
Amp_4q13.3	Amp_20q11.21	0.171	1
Amp_8p11.21	Amp_20q11.21	0.171	1
BCL2L1	RHOA	0.172	1
ERBB2	TMCO4	0.172	1
TMCO4	Amp_19q12	0.172	1
20p-Amp	8q-Amp	0.172	1
3q-Amp	Del_4q22.1	0.172	1
8q-Amp	Del_22q13.32	0.172	1
19p-Del	Del_2q37.1	0.172	1
Del_4q22.1	Del_15q13.1	0.172	1
ARID1B	ERCC2	0.173	1
ARID1B	Del_Xp11.3	0.173	1
ASXL2	Del_22q13.32	0.173	1
EP300	Amp_7p21.1	0.173	1
ERCC2	7p-Amp	0.173	1
HLA-A	MLL	0.173	1
KLF5	KRAS	0.173	1
MLL	UNC93B1	0.173	1
MLL3	NF1	0.173	1
PTEN	5p-Amp	0.173	1
TSC1	Amp_17q12	0.173	1
ERBB2	Amp_5p15.33	0.174	1
GNA13	Amp_22q12.2	0.174	1
KLF5	ZFP36L1	0.174	1
MBD1	Amp_22q12.2	0.174	1
NF1	SF1	0.174	1
PSIP1	Amp_4q13.3	0.174	1
TSC1	Amp_8p11.23	0.174	1
ZFP36L1	17q-Amp	0.174	1
ZFP36L1	Del_1q32.1	0.174	1
19q-Amp	15q-Del	0.174	1
5p-Amp	Amp_4p16.3	0.174	1
7p-Amp	Amp_22q12.2	0.174	1
15q-Del	Amp_4q13.3	0.174	1
18q-Del	Del_16p13.3	0.174	1
Amp_22q12.2	Del_Xq21.33	0.174	1
BCL2L1	Amp_3p25.2	0.175	1
20p-Amp	Del_9p21.3	0.175	1
3p-Amp	Amp_19q13.43	0.175	1
3p-Amp	Del_8p23.3	0.175	1
CDKN2A	Del_3p14.2	0.176	1
SHANK1	Amp_8p11.21	0.176	1
9p-Del	Amp_1q21.3	0.176	1
Amp_10p14	Del_6p25.3	0.176	1
FAM47C	MLL3	0.177	1
FBXW7	7q-Amp	0.177	1
PLCXD3	Del_2q34	0.177	1
PSIP1	Amp_1p34.2	0.177	1
RAI1	Del_22q13.32	0.177	1
RBM10	Del_2q37.1	0.177	1
RBM10	Del_22q13.32	0.177	1
RHOA	Amp_10p14	0.177	1
RXRA	Amp_8q22.3	0.177	1
20q-Amp	Amp_11q22.2	0.177	1
16p-Del	Amp_8q22.3	0.177	1
16p-Del	Del_11q23.3	0.177	1
17p-Del	Amp_17q12	0.177	1
Amp_8p11.23	Del_13q14.2	0.177	1
Amp_13q22.1	Del_2q34	0.177	1
Del_4q34.2	Del_9p23	0.177	1
ARID1B	MLL2	0.178	1
EP300	Del_4q34.2	0.178	1
KLF5	MLL2	0.178	1
PSIP1	Del_17p12	0.178	1
19q-Amp	Amp_6p22.3	0.178	1
Del_17p12	Del_Xp11.3	0.178	1
ARID1A	DNAH6	0.179	1
DNAH6	Amp_5p15.33	0.179	1
GNA13	Amp_8p11.21	0.179	1
TMCO4	Amp_8p11.21	0.179	1
TMCO4	Del_2q22.1	0.179	1
TSC1	Del_9p23	0.179	1
19q-Amp	18q-Del	0.179	1
7q-Amp	Amp_3p25.2	0.179	1
Amp_8p11.21	Del_9p23	0.179	1
Del_2q22.1	Del_9p23	0.179	1
Del_7q36.3	Del_14q24.1	0.179	1
C3orf70	SHANK1	0.18	1
CSMD3	KDM6A	0.18	1
CTNNB1	Del_13q14.2	0.18	1
ERBB2	Del_4q34.2	0.18	1
METTL3	SHANK1	0.18	1
NUDT11	SPTAN1	0.18	1
PIK3CA	SHANK1	0.18	1
SPTAN1	UNC93B1	0.18	1
1q-Amp	Del_13q14.2	0.18	1
8q-Amp	Amp_11q13.3	0.18	1
22q-Del	Del_4q22.1	0.18	1
Amp_1q23.3	Del_4q34.2	0.18	1
Amp_3q26.33	Del_18q23	0.18	1
Del_4q22.1	Del_9p23	0.18	1
CDKN1A	Del_2q37.1	0.181	1
FOXA1	Del_22q13.32	0.181	1
FOXQ1	MLL2	0.181	1
MLL2	THRAP3	0.181	1
MLL2	Del_1p36.11	0.181	1
MLL3	11q-Del	0.181	1
9p-Del	Del_12p13.1	0.181	1
Amp_3p25.2	Del_16p13.3	0.181	1
DNAH6	STAG2	0.182	1
ELF3	5p-Amp	0.182	1
FOXQ1	PARD3	0.182	1
HES1	HLA-A	0.182	1
HLA-A	Amp_6q21	0.182	1
KDM6A	Del_1q32.1	0.182	1
METTL3	MLL2	0.182	1
NRAS	Amp_6q21	0.182	1
PIK3CA	Del_22q13.32	0.182	1
1q-Amp	Del_12p13.1	0.182	1
Amp_1q21.3	Amp_7p11.2	0.182	1
ELF3	ERBB2	0.183	1
ERBB2	3q-Amp	0.183	1
HES1	Amp_3q26.33	0.183	1
NF2	Amp_16p13.2	0.183	1
ZBTB7B	Amp_11q13.3	0.183	1
19q-Amp	8q-Amp	0.183	1
3q-Amp	Amp_19q12	0.183	1
8p-Del	Amp_7p11.2	0.183	1
Amp_6q21	Del_10q23.31	0.183	1
FOXA1	Del_9p23	0.184	1
PLCXD3	Del_Xp11.3	0.184	1
SCARF2	18q-Del	0.184	1
TXNIP	Del_4q22.1	0.184	1
Amp_6p22.3	Del_17p12	0.184	1
ATM	METTL3	0.185	1
ATM	3p-Amp	0.185	1
C3orf70	Del_4q34.2	0.185	1
CDKN1A	SPTAN1	0.185	1
CDKN2A	GNA13	0.185	1
CDKN2A	MBD1	0.185	1
CDKN2A	Del_1q32.1	0.185	1
EP300	15q-Del	0.185	1
FAT1	SHANK1	0.185	1
PIK3CA	Del_12p13.1	0.185	1
PSIP1	17p-Del	0.185	1
SHANK1	Del_11q23.3	0.185	1
SPTAN1	Del_19p13.3	0.185	1
20p-Amp	11p-Del	0.185	1
3q-Amp	Del_8p21.3	0.185	1
17p-Del	Del_22q13.32	0.185	1
Amp_1q21.3	Amp_4p16.3	0.185	1
Amp_1q21.3	Del_7q36.3	0.185	1
ARID1B	ATM	0.186	1
CUL1	5q-Del	0.186	1
CUL1	Del_19p13.3	0.186	1
ERCC2	3q-Amp	0.186	1
KIAA1267	KRAS	0.186	1
NF2	Del_18q23	0.186	1
RHOA	TSC1	0.186	1
RUNX1	16p-Del	0.186	1
RUNX1	Amp_8q22.3	0.186	1
SHANK1	TSC1	0.186	1
17q-Amp	Del_11p15.5	0.186	1
3p-Amp	11q-Del	0.186	1
4p-Del	Del_12p13.1	0.186	1
Amp_13q22.1	Del_11p15.5	0.186	1
Del_1q32.1	Del_11p15.5	0.186	1
DNAH6	Amp_3p25.2	0.187	1
FAT1	TMCO4	0.187	1
FBXW7	PKHD1	0.187	1
FBXW7	Amp_16p13.2	0.187	1
FOXQ1	Del_9p21.3	0.187	1
MBD1	Del_11q23.3	0.187	1
TMCO4	20q-Amp	0.187	1
ZFP36L1	Amp_17q12	0.187	1
Amp_1p34.2	Del_5q12.1	0.187	1
Amp_5p15.33	Del_17p12	0.187	1
Del_2q22.1	Del_9p21.3	0.187	1
Del_11q23.3	Del_Xq21.33	0.187	1
CNNM4	SCARF2	0.188	1
ERBB3	Del_12p13.1	0.188	1
FAM47C	Del_6p25.3	0.188	1
FAT1	PKHD1	0.188	1
FOXA1	9q-Del	0.188	1
PLCXD3	Del_4q34.2	0.188	1
RAI1	Del_16q23.1	0.188	1
RB1	4p-Del	0.188	1
RHOB	Amp_7p21.1	0.188	1
TP53	7p-Amp	0.188	1
9q-Del	Del_1p36.11	0.188	1
Amp_3q26.33	Del_10q23.31	0.188	1
Amp_6p22.3	Del_11p15.5	0.188	1
ARID1B	RHOB	0.189	1
KIAA1267	Del_2q34	0.189	1
ZNF185	Del_13q14.2	0.189	1
Amp_1q23.3	Del_11q23.3	0.189	1
BCL2L1	PSIP1	0.19	1
CDKN2A	MLL3	0.19	1
ELF3	Amp_8p11.23	0.19	1
FOXA1	Del_16q23.1	0.19	1
FOXQ1	Del_6p25.3	0.19	1
NF1	15q-Del	0.19	1
PTEN	Del_6p25.3	0.19	1
RHOB	Del_2q37.1	0.19	1
RXRA	Del_5q12.1	0.19	1
ZFP36L1	16p-Del	0.19	1
11q-Del	Del_10q23.31	0.19	1
11q-Del	Del_19p13.3	0.19	1
16p-Del	Del_5q12.1	0.19	1
Amp_11q22.2	Amp_22q12.2	0.19	1
Amp_12q15	Del_1p36.11	0.19	1
Amp_13q22.1	Del_1p36.11	0.19	1
CDKN2A	8q-Amp	0.191	1
ERBB2	17p-Del	0.191	1
KDM6A	8q-Amp	0.191	1
NUDT11	Del_9p23	0.191	1
RHOB	8q-Amp	0.191	1
RHOB	Del_8p21.3	0.191	1
8q-Amp	Amp_12q15	0.191	1
8p-Del	Del_9p23	0.191	1
Del_16q23.1	Del_18q23	0.191	1
EP300	RPTN	0.192	1
EP300	Del_7q36.3	0.192	1
KIAA1267	Del_17p12	0.192	1
19q-Amp	11p-Del	0.192	1
11q-Del	Del_13q14.2	0.192	1
17p-Del	Del_7q36.3	0.192	1
5q-Del	Del_13q14.2	0.192	1
Amp_4p16.3	Amp_19q12	0.192	1
Amp_6p22.3	Del_15q13.1	0.192	1
Amp_20q11.21	Del_11q23.3	0.192	1
CDKN2A	5q-Del	0.193	1
DNAH6	PSIP1	0.193	1
ERCC2	RXRA	0.193	1
FOXQ1	Del_8p21.3	0.193	1
KDM6A	Amp_17q23.3	0.193	1
NF2	10q-Del	0.193	1
NRAS	Amp_17q23.3	0.193	1
RHOB	Del_19p13.3	0.193	1
Amp_3p25.2	Del_Xq21.33	0.193	1
TMCO4	Del_9p21.3	0.194	1
17q-Amp	Del_9p21.3	0.194	1
20p-Amp	9p-Del	0.194	1
5p-Amp	Amp_8q22.3	0.194	1
CTNNB1	KLF5	0.195	1
CUL1	Amp_3q26.33	0.195	1
CUL1	Del_8p21.3	0.195	1
CUL1	Del_10q23.31	0.195	1
FOXA1	KLF5	0.195	1
FOXA1	7p-Amp	0.195	1
METTL3	Del_8p21.3	0.195	1
MLL3	20q-Amp	0.195	1
SHANK1	Del_2q34	0.195	1
THRAP3	7p-Amp	0.195	1
20q-Amp	Del_2q37.1	0.195	1
3p-Amp	Amp_11q13.3	0.195	1
3p-Amp	Del_8p21.3	0.195	1
Amp_4p16.3	Del_15q13.1	0.195	1
Amp_8p11.21	Del_18q23	0.195	1
ARID1A	Del_Xp11.3	0.196	1
ASXL2	IDH1	0.196	1
FAM47C	Amp_1p34.2	0.196	1
KRAS	Amp_5p15.33	0.196	1
MBD1	Del_2q34	0.196	1
3p-Amp	Amp_4p16.3	0.196	1
3q-Amp	Amp_8p11.21	0.196	1
8p-Del	Del_1p36.11	0.196	1
Amp_5p15.33	Del_Xp11.3	0.196	1
Amp_6p22.3	Del_10q23.31	0.196	1
Amp_8q22.3	Del_10q23.31	0.196	1
Del_2q22.1	Del_15q13.1	0.196	1
ATM	Amp_17q12	0.197	1
FOXQ1	PLCXD3	0.197	1
GNA13	UNC93B1	0.197	1
GNA13	4p-Del	0.197	1
MBD1	4p-Del	0.197	1
NUDT11	TMCO4	0.197	1
RHOA	SHANK1	0.197	1
TMCO4	4p-Del	0.197	1
TP53	Del_22q13.32	0.197	1
7q-Amp	Amp_17q23.3	0.197	1
14q-Del	Amp_5p15.33	0.197	1
14q-Del	Amp_19q13.43	0.197	1
16p-Del	Amp_20q11.21	0.197	1
4q-Del	Amp_3q26.33	0.197	1
4q-Del	Del_10q23.31	0.197	1
ASXL2	C3orf70	0.198	1
ASXL2	CUL1	0.198	1
ASXL2	METTL3	0.198	1
BCL2L1	FAM47C	0.198	1
BCL2L1	RBM10	0.198	1
HES1	STAG2	0.198	1
RUNX1	Amp_22q12.2	0.198	1
SHANK1	Amp_19q13.43	0.198	1
ZBTB7B	Amp_8p11.23	0.198	1
5p-Amp	Amp_6p22.3	0.198	1
Amp_6q21	Amp_8p11.23	0.198	1
Amp_8p11.21	Del_4q34.2	0.198	1
Amp_22q12.2	Del_Xp11.3	0.198	1
Del_2q22.1	Del_4q34.2	0.198	1
ERBB3	RPTN	0.199	1
8q-Amp	Del_2q37.1	0.199	1
Del_2q22.1	Del_3p14.2	0.199	1
C3orf70	Del_17p12	0.2	1
CTNNB1	Amp_7p11.2	0.2	1
ERBB3	SCARF2	0.2	1
NF1	Del_13q14.2	0.2	1
SPTAN1	THRAP3	0.2	1
FAT1	ZFP36L1	0.201	1
20q-Amp	Amp_22q12.2	0.201	1
3q-Amp	Del_14q24.1	0.201	1
3q-Amp	Del_18q23	0.201	1
8q-Amp	6q-Del	0.201	1
10q-Del	Del_14q24.1	0.201	1
15q-Del	Amp_5p15.33	0.201	1
Amp_22q12.2	Del_4q22.1	0.201	1
NF1	ZBTB7B	0.202	1
PTEN	TP53	0.202	1
RHOB	17p-Del	0.202	1
ASXL2	SPTAN1	0.203	1
BCL2L1	Del_9p21.3	0.203	1
CTNNB1	Amp_10p14	0.203	1
FAM47C	Del_11p15.5	0.203	1
PTEN	Amp_10p14	0.203	1
Amp_4p16.3	Del_2q22.1	0.203	1
Amp_4q13.3	Del_12p13.1	0.203	1
Amp_7p11.2	Amp_17q12	0.203	1
HES1	PIK3CA	0.204	1
PKHD1	PSIP1	0.204	1
7q-Amp	Amp_16p13.2	0.204	1
Amp_8p11.23	Del_4q34.2	0.204	1
ERBB2	Del_Xp11.3	0.205	1
ERBB3	Amp_7p21.1	0.205	1
ERBB3	Del_6q27	0.205	1
IDH1	RB1	0.205	1
RUNX1	Amp_19q12	0.205	1
ASXL2	KDM6A	0.206	1
EP300	Del_16q23.1	0.206	1
MLL2	NF1	0.206	1
PLCXD3	Amp_8p11.23	0.206	1
PLCXD3	Del_16p13.3	0.206	1
20p-Amp	Del_9p23	0.206	1
11p-Del	Amp_13q22.1	0.206	1
Amp_7p21.1	Del_17p12	0.206	1
ASXL2	CDKN1A	0.207	1
CDKN2A	NFE2L2	0.207	1
ERBB2	UNC93B1	0.207	1
KDM6A	Del_16q23.1	0.207	1
KIAA1267	18q-Del	0.207	1
KIAA1267	Amp_6p22.3	0.207	1
PIK3CA	Del_6p25.3	0.207	1
PIK3CA	Del_16q23.1	0.207	1
RHOB	Amp_11q22.2	0.207	1
RXRA	Amp_6p22.3	0.207	1
SPTAN1	Amp_1q23.3	0.207	1
ZFP36L1	Amp_22q12.2	0.207	1
20p-Amp	Amp_17q23.3	0.207	1
18q-Del	Amp_11q22.2	0.207	1
Amp_4p16.3	Amp_8q22.3	0.207	1
Amp_6p22.3	Amp_11q22.2	0.207	1
Amp_17q23.3	Del_22q13.32	0.207	1
MLL	Del_4q34.2	0.208	1
RPTN	5p-Amp	0.208	1
TSC1	Amp_4p16.3	0.208	1
15q-Del	Del_11q25	0.208	1
CREBBP	Amp_8p11.23	0.209	1
CTNNB1	RXRA	0.209	1
CTNNB1	16p-Del	0.209	1
FOXA1	KIAA1267	0.209	1
FOXA1	NFE2L2	0.209	1
FOXQ1	RXRA	0.209	1
KIAA1267	THRAP3	0.209	1
KIAA1267	1q-Amp	0.209	1
METTL3	Del_4q22.1	0.209	1
PTEN	22q-Del	0.209	1
RXRA	THRAP3	0.209	1
1q-Amp	Amp_11q22.2	0.209	1
22q-Del	Del_1p36.11	0.209	1
Amp_7p21.1	Del_16p13.3	0.209	1
Del_2q37.1	Del_Xp11.3	0.209	1
ARID1A	PKHD1	0.21	1
CDKN1A	SHANK1	0.21	1
ERBB3	7p-Amp	0.21	1
ERBB3	18q-Del	0.21	1
PLCXD3	RPTN	0.21	1
SHANK1	ZNF185	0.21	1
TP53	Amp_19q12	0.21	1
20p-Amp	Amp_5p15.33	0.21	1
20p-Amp	Del_7q36.3	0.21	1
20q-Amp	Del_15q13.1	0.21	1
Amp_4q13.3	Del_22q13.32	0.21	1
ARID1B	RB1	0.211	1
ASXL2	Amp_3q26.33	0.211	1
ASXL2	Del_10q23.31	0.211	1
CSMD3	MLL2	0.211	1
ELF3	Del_5q12.1	0.211	1
EP300	Amp_8p11.21	0.211	1
ERBB3	MLL3	0.211	1
FAM47C	NF1	0.211	1
KIAA1267	Del_4q34.2	0.211	1
MLL2	STAG2	0.211	1
MLL2	Amp_8p11.23	0.211	1
RXRA	Del_4q34.2	0.211	1
4p-Del	Amp_7p21.1	0.211	1
9q-Del	Amp_17q23.3	0.211	1
ATM	GNA13	0.212	1
ATM	TMCO4	0.212	1
ATM	Del_1q32.1	0.212	1
ERBB3	Amp_16p13.2	0.212	1
KRAS	NUDT11	0.212	1
MLL2	14q-Del	0.212	1
NRAS	RUNX1	0.212	1
NUDT11	Del_Xp11.3	0.212	1
PARD3	Amp_12q15	0.212	1
PARD3	Del_6p25.3	0.212	1
PIK3CA	8q-Amp	0.212	1
PIK3CA	Del_18q23	0.212	1
RUNX1	UNC93B1	0.212	1
TMCO4	Del_4q34.2	0.212	1
UNC93B1	Del_Xp11.3	0.212	1
11q-Del	4p-Del	0.212	1
Amp_13q22.1	Del_12p13.1	0.212	1
Del_1q32.1	Del_4q34.2	0.212	1
HES1	PKHD1	0.213	1
METTL3	PSIP1	0.213	1
METTL3	15q-Del	0.213	1
3p-Amp	15q-Del	0.213	1
Amp_1q23.3	Amp_4q13.3	0.213	1
Amp_6q21	Amp_16p13.2	0.213	1
C3orf70	FGFR3	0.214	1
CSMD3	CUL1	0.214	1
CSMD3	METTL3	0.214	1
EP300	10q-Del	0.214	1
ERCC2	IDH1	0.214	1
KRAS	Amp_8p11.21	0.214	1
METTL3	STAG2	0.214	1
NRAS	Amp_8p11.21	0.214	1
PIK3CA	Del_19p13.3	0.214	1
17q-Amp	Amp_20q11.21	0.214	1
3p-Amp	Del_16p13.3	0.214	1
3q-Amp	11p-Del	0.214	1
7q-Amp	Del_13q14.2	0.214	1
15q-Del	Del_13q14.2	0.214	1
18q-Del	Del_11q23.3	0.214	1
5q-Del	Amp_17q23.3	0.214	1
Amp_3q26.33	Del_2q22.1	0.214	1
Amp_11q13.3	Del_2q22.1	0.214	1
Del_2q22.1	Del_Xp11.3	0.214	1
ERCC2	Amp_22q12.2	0.215	1
RBM10	11p-Del	0.215	1
RHOA	Del_4q34.2	0.215	1
SCARF2	Del_16q23.1	0.215	1
BCL2L1	4q-Del	0.216	1
MLL3	Del_2q34	0.216	1
RBM10	Del_8p23.3	0.216	1
SF1	Amp_5p15.33	0.216	1
CSMD3	PIK3CA	0.217	1
RB1	Amp_13q22.1	0.217	1
RB1	Del_6p25.3	0.217	1
RB1	Del_16q23.1	0.217	1
RPTN	4q-Del	0.217	1
STAG2	5q-Del	0.217	1
7p-Amp	Del_7q36.3	0.217	1
9p-Del	Del_6p25.3	0.217	1
ATM	Del_4q22.1	0.218	1
FGFR3	MLL3	0.218	1
HRAS	8q-Amp	0.218	1
NF1	Amp_11q13.3	0.218	1
PIK3CA	Amp_4p16.3	0.218	1
PSIP1	Del_15q13.1	0.218	1
TXNIP	Del_18q23	0.218	1
11q-Del	8p-Del	0.218	1
Amp_1q23.3	Del_Xq21.33	0.218	1
ARID1A	22q-Del	0.219	1
ELF3	FOXA1	0.219	1
FOXA1	Amp_17q23.3	0.219	1
FOXA1	Del_3p14.2	0.219	1
FOXQ1	Amp_17q23.3	0.219	1
MLL3	8p-Del	0.219	1
PIK3CA	14q-Del	0.219	1
PIK3CA	4p-Del	0.219	1
THRAP3	Amp_17q23.3	0.219	1
ZFP36L1	Amp_8q22.3	0.219	1
1q-Amp	Amp_17q23.3	0.219	1
Amp_5p15.33	Amp_11q22.2	0.219	1
ERBB3	Del_5q12.1	0.22	1
FBXW7	Del_Xq21.33	0.22	1
KLF5	PIK3CA	0.22	1
MBD1	Amp_1p34.2	0.22	1
PIK3CA	4q-Del	0.22	1
TSC1	18q-Del	0.22	1
19q-Amp	Amp_12q15	0.22	1
Amp_1p34.2	Amp_8p11.23	0.22	1
Amp_4q13.3	Del_16q23.1	0.22	1
Amp_12q15	Del_7q36.3	0.22	1
Amp_13q22.1	Del_7q36.3	0.22	1
Del_6p25.3	Del_7q36.3	0.22	1
Del_7q36.3	Del_16q23.1	0.22	1
CREBBP	KDM6A	0.221	1
DNAH6	KDM6A	0.221	1
ERBB2	ERBB3	0.221	1
ERCC2	METTL3	0.221	1
ERCC2	3p-Amp	0.221	1
FAT1	UNC93B1	0.221	1
HLA-A	Del_17p12	0.221	1
MBD1	Amp_6p22.3	0.221	1
MBD1	Amp_11q13.3	0.221	1
RHOB	Del_11p15.5	0.221	1
17q-Amp	Amp_6p22.3	0.221	1
Amp_3q26.33	Del_Xq21.33	0.221	1
Amp_6p22.3	Del_1q32.1	0.221	1
Del_10q23.31	Del_Xq21.33	0.221	1
CDKN1A	NF2	0.222	1
CTNNB1	ZFP36L1	0.222	1
CTNNB1	Amp_22q12.2	0.222	1
FOXA1	ZFP36L1	0.222	1
PSIP1	Amp_1q21.3	0.222	1
RHOB	Del_4q22.1	0.222	1
SPTAN1	Del_4q22.1	0.222	1
19p-Del	Amp_1q21.3	0.222	1
19p-Del	Del_1q32.1	0.222	1
Amp_8p11.23	Del_10q23.31	0.222	1
Del_2q22.1	Del_8p21.3	0.222	1
ASXL2	SHANK1	0.223	1
CNOT1	Amp_17q23.3	0.223	1
CNOT1	Del_3p14.2	0.223	1
FAM47C	Del_3p14.2	0.223	1
FAT1	Del_Xp11.3	0.223	1
NFE2L2	4p-Del	0.223	1
PLCXD3	TXNIP	0.223	1
RUNX1	4p-Del	0.223	1
RXRA	14q-Del	0.223	1
RXRA	Amp_11q13.3	0.223	1
SPTAN1	Amp_3p25.2	0.223	1
22q-Del	Amp_3q26.33	0.223	1
ARID1B	20p-Amp	0.224	1
MLL2	RAI1	0.224	1
PARD3	TXNIP	0.224	1
RBM10	Del_9p21.3	0.224	1
3q-Amp	Amp_6q21	0.224	1
3q-Amp	Del_2q34	0.224	1
10q-Del	Amp_6q21	0.224	1
15q-Del	9q-Del	0.224	1
6q-Del	Amp_6q21	0.224	1
Amp_3q26.33	Amp_12q15	0.224	1
Amp_3q26.33	Del_16q23.1	0.224	1
Amp_6q21	Del_15q13.1	0.224	1
Amp_12q15	Del_10q23.31	0.224	1
ARID1A	Del_11q23.3	0.225	1
ELF3	Amp_13q22.1	0.225	1
FAM47C	PKHD1	0.225	1
MLL	Amp_17q23.3	0.225	1
Amp_13q22.1	Del_3p14.2	0.225	1
Amp_17q23.3	Del_6p25.3	0.225	1
Del_3p14.2	Del_6p25.3	0.225	1
FOXA1	HLA-A	0.226	1
FOXA1	Del_17p12	0.226	1
FOXQ1	NRAS	0.226	1
HLA-A	PTEN	0.226	1
HLA-A	Del_1p36.11	0.226	1
METTL3	Amp_3p25.2	0.226	1
NRAS	Del_1p36.11	0.226	1
SHANK1	Del_10q23.31	0.226	1
THRAP3	UNC93B1	0.226	1
19q-Amp	9q-Del	0.226	1
5p-Amp	Del_4q22.1	0.226	1
Amp_4q13.3	Del_5q12.1	0.226	1
Amp_10p14	Del_16p13.3	0.226	1
Amp_16p13.2	Del_13q14.2	0.226	1
Del_5q12.1	Del_7q36.3	0.226	1
ASXL2	4p-Del	0.227	1
EP300	HRAS	0.227	1
EP300	Amp_7p11.2	0.227	1
MLL3	3q-Amp	0.227	1
MLL3	6q-Del	0.227	1
MLL3	Del_15q13.1	0.227	1
RPTN	Del_8p23.3	0.227	1
20p-Amp	Del_14q24.1	0.227	1
3q-Amp	Del_2q37.1	0.227	1
GNA13	Amp_1q21.3	0.228	1
NF2	8p-Del	0.228	1
PIK3CA	9q-Del	0.228	1
PKHD1	20p-Amp	0.228	1
PTEN	RB1	0.228	1
RHOA	TP53	0.228	1
SHANK1	TP53	0.228	1
20p-Amp	Amp_16p13.2	0.228	1
Amp_1q21.3	Del_1q32.1	0.228	1
Amp_22q12.2	Del_17p12	0.228	1
ASXL2	Del_5q12.1	0.229	1
C3orf70	RBM10	0.229	1
CNOT1	CUL1	0.229	1
CNOT1	METTL3	0.229	1
CREBBP	PTEN	0.229	1
CREBBP	1q-Amp	0.229	1
CSMD3	ERBB2	0.229	1
FOXA1	Del_6q27	0.229	1
FOXA1	Del_11q25	0.229	1
FOXQ1	Del_6q27	0.229	1
METTL3	RBM10	0.229	1
PTEN	Amp_7p21.1	0.229	1
PTEN	Del_6q27	0.229	1
RAI1	3p-Amp	0.229	1
RBM10	3p-Amp	0.229	1
THRAP3	Del_6q27	0.229	1
1q-Amp	Del_6q27	0.229	1
5p-Amp	Del_10q23.31	0.229	1
Del_1p36.11	Del_6q27	0.229	1
Del_1p36.11	Del_11q25	0.229	1
MLL2	Del_18q23	0.23	1
PLCXD3	8q-Amp	0.23	1
PLCXD3	Del_18q23	0.23	1
5q-Del	Amp_7p21.1	0.23	1
5q-Del	Del_11q25	0.23	1
8p-Del	Amp_22q12.2	0.23	1
Amp_1p34.2	Amp_6p22.3	0.23	1
Amp_20q11.21	Amp_22q12.2	0.23	1
Del_8p23.3	Del_Xq21.33	0.23	1
FAT1	17p-Del	0.231	1
RB1	Amp_20q11.21	0.231	1
RPTN	SPTAN1	0.231	1
ZNF185	7q-Amp	0.231	1
ASXL2	NF2	0.232	1
ASXL2	SF1	0.232	1
CNNM4	Amp_17q12	0.232	1
GNA13	NF1	0.232	1
NF1	Del_1q32.1	0.232	1
NFE2L2	Del_7q36.3	0.232	1
PSIP1	RHOA	0.232	1
PSIP1	SHANK1	0.232	1
16p-Del	Del_7q36.3	0.232	1
Amp_11q22.2	Del_7q36.3	0.232	1
C3orf70	Del_14q24.1	0.233	1
CUL1	18q-Del	0.233	1
ERBB3	3q-Amp	0.233	1
ERBB3	6q-Del	0.233	1
ERBB3	Del_15q13.1	0.233	1
3p-Amp	18q-Del	0.233	1
Amp_3p25.2	Amp_5p15.33	0.233	1
Amp_12q15	Del_9p23	0.233	1
Del_8p23.3	Del_13q14.2	0.233	1
MLL2	RPTN	0.234	1
MLL3	ZNF185	0.234	1
RPTN	8p-Del	0.234	1
5p-Amp	8q-Amp	0.234	1
5p-Amp	Del_18q23	0.234	1
9p-Del	Del_10q23.31	0.234	1
Amp_16p13.2	Del_11p15.5	0.234	1
CREBBP	FAT1	0.235	1
CREBBP	RAI1	0.235	1
CUL1	PLCXD3	0.235	1
ELF3	Amp_17q12	0.235	1
ERBB3	8p-Del	0.235	1
FGFR3	20p-Amp	0.235	1
NF1	Del_9p21.3	0.235	1
RBM10	Del_11q25	0.235	1
20p-Amp	Del_2q37.1	0.235	1
20q-Amp	Del_11q25	0.235	1
Amp_4p16.3	Del_19p13.3	0.235	1
Amp_17q12	Del_3p14.2	0.235	1
Del_12p13.1	Del_18q23	0.235	1
CDKN2A	CTNNB1	0.236	1
FOXQ1	RHOB	0.236	1
IDH1	MLL2	0.236	1
MLL	5p-Amp	0.236	1
MLL2	Amp_19q13.43	0.236	1
SHANK1	Del_4q22.1	0.236	1
Amp_11q22.2	Del_8p21.3	0.236	1
ARID1A	UNC93B1	0.237	1
CDKN2A	ERCC2	0.237	1
FBXW7	7p-Amp	0.237	1
KLF5	Amp_13q22.1	0.237	1
KLF5	Del_6p25.3	0.237	1
MBD1	MLL2	0.237	1
7p-Amp	Amp_13q22.1	0.237	1
4q-Del	Amp_1p34.2	0.237	1
Del_9p21.3	Del_14q24.1	0.237	1
CREBBP	MLL3	0.238	1
CSMD3	TMCO4	0.238	1
ERBB3	Del_2q22.1	0.238	1
KRAS	19p-Del	0.238	1
MBD1	Amp_8p11.23	0.238	1
MBD1	Del_16p13.3	0.238	1
MLL3	Del_6q27	0.238	1
NF1	TSC1	0.238	1
STAG2	Del_Xq21.33	0.238	1
TMCO4	Del_16p13.3	0.238	1
9p-Del	Amp_8p11.21	0.238	1
9p-Del	Del_2q22.1	0.238	1
Amp_3p25.2	Del_10q23.31	0.238	1
Amp_8p11.23	Del_Xq21.33	0.238	1
Del_16p13.3	Del_Xq21.33	0.238	1
CDKN2A	Del_2q34	0.239	1
ERBB2	THRAP3	0.239	1
FOXQ1	Amp_19q12	0.239	1
HRAS	20p-Amp	0.239	1
MLL2	Amp_3p25.2	0.239	1
PSIP1	TP53	0.239	1
RUNX1	Amp_3p25.2	0.239	1
TSC1	17p-Del	0.239	1
19p-Del	Amp_17q23.3	0.239	1
5q-Del	Amp_1q23.3	0.239	1
6q-Del	Amp_16p13.2	0.239	1
Amp_16p13.2	Del_15q13.1	0.239	1
Amp_19q12	Del_1p36.11	0.239	1
ARID1B	DNAH6	0.24	1
ARID1B	HRAS	0.24	1
CNOT1	Del_15q13.1	0.24	1
RAI1	3q-Amp	0.24	1
TXNIP	7p-Amp	0.24	1
20q-Amp	Del_11p15.5	0.24	1
ASXL2	CSMD3	0.241	1
BCL2L1	RHOB	0.241	1
HLA-A	RPTN	0.241	1
NF2	Del_4q22.1	0.241	1
NRAS	19q-Amp	0.241	1
NUDT11	19q-Amp	0.241	1
RB1	Amp_7p11.2	0.241	1
20p-Amp	Amp_19q12	0.241	1
Amp_6p22.3	Del_6q27	0.241	1
ATM	HLA-A	0.242	1
ATM	UNC93B1	0.242	1
CNOT1	ZNF185	0.242	1
ERCC2	11q-Del	0.242	1
FAM47C	ZNF185	0.242	1
UNC93B1	Del_4q34.2	0.242	1
7p-Amp	Del_2q37.1	0.242	1
Amp_10p14	Del_3p14.2	0.242	1
ASXL2	8p-Del	0.243	1
ELF3	FBXW7	0.243	1
ELF3	Amp_1p34.2	0.243	1
FAM47C	Amp_5p15.33	0.243	1
MLL	PKHD1	0.243	1
PKHD1	Amp_12q15	0.243	1
PKHD1	Del_6p25.3	0.243	1
RB1	Amp_11q22.2	0.243	1
20q-Amp	15q-Del	0.243	1
15q-Del	Del_11q23.3	0.243	1
Amp_1p34.2	Amp_17q23.3	0.243	1
Amp_7p21.1	Amp_12q15	0.243	1
Amp_12q15	Del_11q25	0.243	1
Amp_13q22.1	Del_6q27	0.243	1
BCL2L1	Del_17p12	0.244	1
MLL2	PKHD1	0.244	1
RHOA	Del_17p12	0.244	1
SPTAN1	Amp_3q26.33	0.244	1
TMCO4	Amp_16p13.2	0.244	1
TSC1	Del_17p12	0.244	1
5p-Amp	Amp_8p11.21	0.244	1
7q-Amp	Amp_10p14	0.244	1
Amp_3q26.33	Amp_7p11.2	0.244	1
Amp_7p11.2	Amp_11q13.3	0.244	1
PTEN	Amp_8q22.3	0.245	1
18q-Del	Del_16q23.1	0.245	1
Amp_8q22.3	Del_1p36.11	0.245	1
ARID1A	8p-Del	0.246	1
IDH1	MBD1	0.246	1
IDH1	TMCO4	0.246	1
IDH1	Del_1q32.1	0.246	1
IDH1	Del_Xq21.33	0.246	1
METTL3	PARD3	0.246	1
METTL3	Del_12p13.1	0.246	1
PARD3	17p-Del	0.246	1
TXNIP	5p-Amp	0.246	1
ZBTB7B	Amp_19q13.43	0.246	1
Amp_5p15.33	Del_6q27	0.246	1
Amp_6q21	Amp_19q13.43	0.246	1
CNOT1	Del_13q14.2	0.247	1
CREBBP	19p-Del	0.247	1
PLCXD3	RHOA	0.247	1
RAI1	Del_13q14.2	0.247	1
RB1	Del_5q12.1	0.247	1
SCARF2	Del_6q27	0.247	1
SCARF2	Del_11q25	0.247	1
ZFP36L1	Amp_4q13.3	0.247	1
8q-Amp	Amp_1q21.3	0.247	1
Amp_3q26.33	Del_13q14.2	0.247	1
Amp_4q13.3	Amp_22q12.2	0.247	1
Amp_22q12.2	Del_7q36.3	0.247	1
ARID1A	PTEN	0.248	1
ARID1A	1q-Amp	0.248	1
CDKN2A	Del_5q12.1	0.248	1
ERBB2	RAI1	0.248	1
KIAA1267	Del_16p13.3	0.248	1
RBM10	Amp_19q12	0.248	1
RXRA	20p-Amp	0.248	1
STAG2	Del_9p23	0.248	1
TP53	Del_6p25.3	0.248	1
20p-Amp	16p-Del	0.248	1
16p-Del	Amp_8p11.23	0.248	1
Amp_8p11.23	Del_9p23	0.248	1
BCL2L1	4p-Del	0.249	1
FBXW7	RUNX1	0.249	1
FBXW7	Del_Xp11.3	0.249	1
FOXQ1	Amp_8p11.21	0.249	1
FOXQ1	Del_2q22.1	0.249	1
IDH1	Del_22q13.32	0.249	1
KRAS	Amp_1p34.2	0.249	1
PIK3CA	3q-Amp	0.249	1
PIK3CA	6q-Del	0.249	1
PIK3CA	Del_15q13.1	0.249	1
PTEN	Del_2q22.1	0.249	1
20p-Amp	3q-Amp	0.249	1
20p-Amp	6q-Del	0.249	1
20p-Amp	Del_15q13.1	0.249	1
3q-Amp	Del_22q13.32	0.249	1
8p-Del	Amp_7p21.1	0.249	1
Amp_1p34.2	Del_Xp11.3	0.249	1
Amp_8p11.21	Del_1p36.11	0.249	1
Amp_8p11.21	Del_16p13.3	0.249	1
Del_1p36.11	Del_2q22.1	0.249	1
CNNM4	ZBTB7B	0.25	1
CNNM4	Amp_6q21	0.25	1
CNOT1	RHOA	0.25	1
ELF3	Del_12p13.1	0.25	1
FAM47C	SHANK1	0.25	1
FOXQ1	14q-Del	0.25	1
GNA13	Del_8p21.3	0.25	1
HES1	NF2	0.25	1
HES1	SF1	0.25	1
NF2	Amp_6q21	0.25	1
RAI1	RHOA	0.25	1
4p-Del	Del_1p36.11	0.25	1
Del_1q32.1	Del_8p21.3	0.25	1
Del_3p14.2	Del_12p13.1	0.25	1
DNAH6	MLL	0.251	1
DNAH6	Amp_12q15	0.251	1
FAM47C	Amp_6p22.3	0.251	1
IDH1	Amp_3p25.2	0.251	1
KDM6A	7q-Amp	0.251	1
KDM6A	15q-Del	0.251	1
KDM6A	8p-Del	0.251	1
NF1	Amp_20q11.21	0.251	1
RUNX1	Del_4q34.2	0.251	1
TXNIP	Del_6p25.3	0.251	1
TXNIP	Del_16q23.1	0.251	1
ZFP36L1	Amp_11q13.3	0.251	1
20q-Amp	14q-Del	0.251	1
ELF3	RPTN	0.252	1
PARD3	ZNF185	0.252	1
RHOB	18q-Del	0.252	1
3p-Amp	Amp_20q11.21	0.252	1
Del_6p25.3	Del_13q14.2	0.252	1
ATM	3q-Amp	0.253	1
ATM	Del_15q13.1	0.253	1
C3orf70	Amp_8q22.3	0.253	1
FOXA1	Del_2q37.1	0.253	1
KDM6A	SF1	0.253	1
METTL3	8q-Amp	0.253	1
METTL3	Amp_8q22.3	0.253	1
METTL3	Del_18q23	0.253	1
MLL3	PTEN	0.253	1
PIK3CA	TP53	0.253	1
8q-Amp	Del_13q14.2	0.253	1
Amp_7p21.1	Del_2q34	0.253	1
ARID1A	ASXL2	0.254	1
CTNNB1	SCARF2	0.254	1
ERBB2	FAT1	0.254	1
ERBB3	TSC1	0.254	1
FOXQ1	19p-Del	0.254	1
PTEN	SCARF2	0.254	1
SCARF2	THRAP3	0.254	1
DNAH6	NRAS	0.255	1
DNAH6	Del_13q14.2	0.255	1
ERBB2	19p-Del	0.255	1
ERBB2	Del_5q12.1	0.255	1
NRAS	TXNIP	0.255	1
TXNIP	UNC93B1	0.255	1
Amp_19q13.43	Del_11q23.3	0.255	1
DNAH6	RXRA	0.256	1
ELF3	Del_4q22.1	0.256	1
GNA13	10q-Del	0.256	1
GNA13	6q-Del	0.256	1
KDM6A	14q-Del	0.256	1
KIAA1267	TXNIP	0.256	1
MBD1	6q-Del	0.256	1
TMCO4	Del_15q13.1	0.256	1
TP53	Amp_11q22.2	0.256	1
TXNIP	16p-Del	0.256	1
17q-Amp	6q-Del	0.256	1
10q-Del	Del_Xq21.33	0.256	1
5q-Del	Amp_6q21	0.256	1
Amp_3p25.2	Del_11q23.3	0.256	1
Del_15q13.1	Del_Xq21.33	0.256	1
FAM47C	Del_5q12.1	0.257	1
FGFR3	Amp_12q15	0.257	1
GNA13	PIK3CA	0.257	1
PARD3	Del_17p12	0.257	1
PIK3CA	TMCO4	0.257	1
PIK3CA	16p-Del	0.257	1
PIK3CA	22q-Del	0.257	1
SHANK1	Del_11p15.5	0.257	1
STAG2	Del_6p25.3	0.257	1
STAG2	Del_16q23.1	0.257	1
Amp_6q21	Del_17p12	0.257	1
Amp_8p11.23	Del_16q23.1	0.257	1
ARID1A	ZFP36L1	0.258	1
ERBB3	3p-Amp	0.258	1
FBXW7	NFE2L2	0.258	1
FBXW7	16p-Del	0.258	1
FBXW7	22q-Del	0.258	1
IDH1	MLL	0.258	1
3q-Amp	Del_15q13.1	0.258	1
15q-Del	Amp_8q22.3	0.258	1
Amp_1p34.2	Amp_7p21.1	0.258	1
Amp_1p34.2	Amp_11q22.2	0.258	1
Amp_1q23.3	Del_2q22.1	0.258	1
Amp_3q26.33	Amp_4p16.3	0.258	1
Amp_4p16.3	Amp_11q13.3	0.258	1
CTNNB1	20q-Amp	0.259	1
ERCC2	Del_2q37.1	0.259	1
20q-Amp	Del_1p36.11	0.259	1
8p-Del	Del_13q14.2	0.259	1
Amp_1q23.3	Del_2q37.1	0.259	1
FAM47C	Del_2q22.1	0.26	1
MLL2	Amp_8q22.3	0.26	1
PSIP1	Del_19p13.3	0.26	1
RUNX1	Amp_3q26.33	0.26	1
7q-Amp	5q-Del	0.26	1
Del_10q23.31	Del_Xp11.3	0.26	1
C3orf70	Amp_6p22.3	0.261	1
CNOT1	Amp_1q21.3	0.261	1
KDM6A	9p-Del	0.261	1
MLL3	Amp_13q22.1	0.261	1
RAI1	Amp_1q21.3	0.261	1
STAG2	Amp_8p11.23	0.261	1
TP53	Del_2q34	0.261	1
3p-Amp	Amp_6p22.3	0.261	1
9q-Del	Del_8p23.3	0.261	1
Amp_8p11.23	Del_16p13.3	0.261	1
CDKN2A	4p-Del	0.262	1
KLF5	ZNF185	0.262	1
MLL3	Del_4q34.2	0.262	1
NF1	RUNX1	0.262	1
RHOB	4p-Del	0.262	1
RPTN	Del_9p21.3	0.262	1
RXRA	Del_16q23.1	0.262	1
ZNF185	7p-Amp	0.262	1
22q-Del	Amp_13q22.1	0.262	1
Amp_11q22.2	Amp_13q22.1	0.262	1
Amp_11q22.2	Del_6p25.3	0.262	1
ARID1B	CUL1	0.263	1
ARID1B	3p-Amp	0.263	1
C3orf70	4q-Del	0.263	1
CREBBP	RPTN	0.263	1
DNAH6	SPTAN1	0.263	1
FGFR3	NRAS	0.263	1
METTL3	4q-Del	0.263	1
NUDT11	STAG2	0.263	1
NUDT11	Amp_8p11.23	0.263	1
PARD3	Amp_7p21.1	0.263	1
PARD3	Del_6q27	0.263	1
SPTAN1	Del_14q24.1	0.263	1
UNC93B1	Del_16p13.3	0.263	1
19q-Amp	Del_6q27	0.263	1
19q-Amp	Del_11q25	0.263	1
3p-Amp	7p-Amp	0.263	1
3q-Amp	Del_12p13.1	0.263	1
19p-Del	Del_2q22.1	0.263	1
Amp_20q11.21	Del_4q34.2	0.263	1
C3orf70	EP300	0.264	1
C3orf70	17p-Del	0.264	1
CDKN2A	Amp_8q22.3	0.264	1
CSMD3	Del_4q22.1	0.264	1
EP300	3p-Amp	0.264	1
METTL3	17p-Del	0.264	1
STAG2	Del_4q22.1	0.264	1
3p-Amp	11p-Del	0.264	1
3q-Amp	Del_11p15.5	0.264	1
Amp_1q21.3	Del_9p23	0.264	1
Amp_1q23.3	Del_16p13.3	0.264	1
ERBB3	20p-Amp	0.265	1
ERBB3	Del_22q13.32	0.265	1
TXNIP	Del_5q12.1	0.265	1
3q-Amp	Amp_12q15	0.265	1
4p-Del	Amp_3p25.2	0.265	1
Amp_11q13.3	Del_5q12.1	0.265	1
BCL2L1	FBXW7	0.266	1
RHOB	Del_17p12	0.266	1
3q-Amp	Amp_8q22.3	0.266	1
7p-Amp	Del_18q23	0.266	1
ASXL2	HES1	0.267	1
ERBB3	Amp_3p25.2	0.267	1
IDH1	SPTAN1	0.267	1
MLL2	TP53	0.267	1
SPTAN1	Amp_20q11.21	0.267	1
14q-Del	Del_13q14.2	0.267	1
Amp_3p25.2	Del_18q23	0.267	1
PARD3	RHOA	0.268	1
3q-Amp	Amp_11q13.3	0.268	1
11q-Del	Amp_20q11.21	0.268	1
6q-Del	Amp_11q13.3	0.268	1
Amp_3q26.33	Del_15q13.1	0.268	1
Amp_12q15	Del_5q12.1	0.268	1
Amp_17q12	Amp_19q12	0.268	1
ASXL2	Del_9p23	0.269	1
C3orf70	NUDT11	0.269	1
C3orf70	UNC93B1	0.269	1
CUL1	NRAS	0.269	1
RBM10	8p-Del	0.269	1
UNC93B1	3p-Amp	0.269	1
ARID1A	RHOA	0.27	1
ARID1A	SPTAN1	0.27	1
ASXL2	Amp_1p34.2	0.27	1
CNNM4	MBD1	0.27	1
CSMD3	FAT1	0.27	1
CUL1	20p-Amp	0.27	1
FAT1	Del_16p13.3	0.27	1
FOXA1	Del_2q34	0.27	1
FOXQ1	Del_2q34	0.27	1
RAI1	Amp_4p16.3	0.27	1
SCARF2	Del_7q36.3	0.27	1
STAG2	Del_11q23.3	0.27	1
THRAP3	Del_2q34	0.27	1
1q-Amp	Del_2q34	0.27	1
3p-Amp	Del_22q13.32	0.27	1
19p-Del	Del_7q36.3	0.27	1
Amp_1p34.2	Amp_17q12	0.27	1
CSMD3	PKHD1	0.271	1
HRAS	ZFP36L1	0.271	1
METTL3	Amp_1q21.3	0.271	1
MLL2	PARD3	0.271	1
PLCXD3	PSIP1	0.271	1
RB1	RPTN	0.271	1
SCARF2	Del_11q23.3	0.271	1
20q-Amp	19p-Del	0.271	1
Amp_8p11.23	Amp_16p13.2	0.271	1
ELF3	11p-Del	0.272	1
HES1	ZBTB7B	0.272	1
KDM6A	METTL3	0.272	1
RB1	Amp_1q23.3	0.272	1
ZBTB7B	Amp_6q21	0.272	1
17q-Amp	Del_9p23	0.272	1
8p-Del	Amp_19q12	0.272	1
CDKN1A	RB1	0.273	1
CDKN2A	Amp_10p14	0.273	1
CNOT1	FAT1	0.273	1
CNOT1	Del_11q23.3	0.273	1
ERBB3	Del_2q34	0.273	1
GNA13	Del_18q23	0.273	1
NF1	Del_17p12	0.273	1
RBM10	20q-Amp	0.273	1
RBM10	Del_11q23.3	0.273	1
RHOB	Amp_10p14	0.273	1
Del_4q22.1	Del_11q25	0.273	1
BCL2L1	NF1	0.274	1
ERBB2	RPTN	0.274	1
FAT1	Del_2q22.1	0.274	1
NF1	Del_19p13.3	0.274	1
20q-Amp	Del_2q22.1	0.274	1
Amp_1p34.2	Amp_19q12	0.274	1
Amp_16p13.2	Del_Xp11.3	0.274	1
ASXL2	PSIP1	0.275	1
ELF3	Amp_3p25.2	0.275	1
NF1	RXRA	0.275	1
PSIP1	Amp_17q12	0.275	1
Amp_3p25.2	Amp_17q23.3	0.275	1
ARID1A	Amp_19q12	0.276	1
RPTN	4p-Del	0.276	1
SPTAN1	Del_13q14.2	0.276	1
19q-Amp	14q-Del	0.276	1
15q-Del	9p-Del	0.276	1
4p-Del	Del_7q36.3	0.276	1
Del_9p21.3	Del_Xp11.3	0.276	1
ATM	8q-Amp	0.277	1
FBXW7	PTEN	0.277	1
FBXW7	THRAP3	0.277	1
FBXW7	1q-Amp	0.277	1
KIAA1267	Amp_7p11.2	0.277	1
MLL3	NFE2L2	0.277	1
PTEN	Amp_1p34.2	0.277	1
8q-Amp	Del_4q34.2	0.277	1
Amp_1p34.2	Del_1p36.11	0.277	1
Amp_7p11.2	Amp_11q22.2	0.277	1
CREBBP	8q-Amp	0.278	1
ELF3	ERCC2	0.278	1
ELF3	7p-Amp	0.278	1
ELF3	4q-Del	0.278	1
ERBB3	Del_18q23	0.278	1
HES1	Amp_5p15.33	0.278	1
IDH1	Amp_6p22.3	0.278	1
19q-Amp	Del_17p12	0.278	1
7p-Amp	Amp_17q23.3	0.278	1
7p-Amp	Del_3p14.2	0.278	1
8q-Amp	Del_6q27	0.278	1
22q-Del	Del_9p23	0.278	1
Amp_4q13.3	Del_17p12	0.278	1
Amp_7p21.1	Del_18q23	0.278	1
Del_11q23.3	Del_19p13.3	0.278	1
ATM	7q-Amp	0.279	1
C3orf70	NFE2L2	0.279	1
C3orf70	RXRA	0.279	1
C3orf70	Amp_11q22.2	0.279	1
CUL1	KIAA1267	0.279	1
CUL1	NFE2L2	0.279	1
FBXW7	Amp_22q12.2	0.279	1
METTL3	RXRA	0.279	1
RXRA	3p-Amp	0.279	1
1q-Amp	Del_11p15.5	0.279	1
3p-Amp	22q-Del	0.279	1
3p-Amp	Amp_11q22.2	0.279	1
18q-Del	Amp_3q26.33	0.279	1
19p-Del	Del_2q34	0.279	1
Del_1p36.11	Del_11p15.5	0.279	1
ASXL2	18q-Del	0.28	1
CDKN2A	Amp_3q26.33	0.28	1
CDKN2A	Amp_11q13.3	0.28	1
CNNM4	MLL3	0.28	1
CSMD3	KRAS	0.28	1
CSMD3	Del_Xp11.3	0.28	1
FAM47C	Amp_10p14	0.28	1
KRAS	Del_16p13.3	0.28	1
RBM10	Amp_10p14	0.28	1
RHOB	Amp_3q26.33	0.28	1
RUNX1	STAG2	0.28	1
SF1	Del_2q37.1	0.28	1
TP53	6q-Del	0.28	1
TSC1	Amp_5p15.33	0.28	1
8p-Del	9q-Del	0.28	1
Amp_8p11.21	Del_16q23.1	0.28	1
Amp_12q15	Del_2q22.1	0.28	1
Del_16p13.3	Del_Xp11.3	0.28	1
CNNM4	ERBB3	0.281	1
ERCC2	Del_4q22.1	0.281	1
ZNF185	Amp_1q21.3	0.281	1
3q-Amp	8p-Del	0.281	1
18q-Del	Amp_1q21.3	0.281	1
Amp_6p22.3	Del_19p13.3	0.281	1
BCL2L1	PKHD1	0.282	1
BCL2L1	Amp_16p13.2	0.282	1
FBXW7	MLL3	0.282	1
FBXW7	Del_2q37.1	0.282	1
HLA-A	SHANK1	0.282	1
IDH1	THRAP3	0.282	1
MBD1	11p-Del	0.282	1
MBD1	17p-Del	0.282	1
SHANK1	UNC93B1	0.282	1
ZFP36L1	ZNF185	0.282	1
11p-Del	Del_1q32.1	0.282	1
17p-Del	Del_Xq21.33	0.282	1
C3orf70	Amp_12q15	0.283	1
CREBBP	NF1	0.283	1
ERBB3	RHOB	0.283	1
METTL3	Amp_12q15	0.283	1
METTL3	Del_6p25.3	0.283	1
MLL	3p-Amp	0.283	1
3p-Amp	Amp_12q15	0.283	1
ELF3	Del_3p14.2	0.284	1
ERBB2	Amp_1q21.3	0.284	1
MLL2	10q-Del	0.284	1
MLL2	Del_15q13.1	0.284	1
ARID1B	RHOA	0.285	1
CUL1	5p-Amp	0.285	1
ERBB3	Del_16q23.1	0.285	1
IDH1	Amp_17q23.3	0.285	1
RHOA	4q-Del	0.285	1
RPTN	Amp_8p11.21	0.285	1
RPTN	Del_2q22.1	0.285	1
TXNIP	Amp_10p14	0.285	1
19q-Amp	Amp_8p11.21	0.285	1
Amp_1p34.2	Del_8p23.3	0.285	1
Amp_4q13.3	Amp_8p11.21	0.285	1
Amp_7p21.1	Del_11p15.5	0.285	1
Amp_8p11.23	Del_9p21.3	0.285	1
Amp_8p11.21	Del_7q36.3	0.285	1
Del_8p21.3	Del_9p21.3	0.285	1
CNOT1	5q-Del	0.286	1
CNOT1	Del_19p13.3	0.286	1
DNAH6	Amp_17q23.3	0.286	1
ELF3	TXNIP	0.286	1
FAM47C	5q-Del	0.286	1
RBM10	11q-Del	0.286	1
RBM10	5q-Del	0.286	1
Amp_6q21	Amp_10p14	0.286	1
Amp_19q13.43	Del_2q37.1	0.286	1
CDKN2A	TXNIP	0.287	1
KLF5	6q-Del	0.287	1
PARD3	Amp_5p15.33	0.287	1
3q-Amp	Del_Xp11.3	0.287	1
10q-Del	Del_Xp11.3	0.287	1
6q-Del	Del_Xp11.3	0.287	1
Amp_3q26.33	Del_2q37.1	0.287	1
KDM6A	Amp_1q21.3	0.288	1
THRAP3	Amp_3p25.2	0.288	1
1q-Amp	Amp_3p25.2	0.288	1
ARID1A	Del_4q22.1	0.289	1
ASXL2	TP53	0.289	1
CNNM4	KRAS	0.289	1
CNNM4	Del_Xp11.3	0.289	1
ERCC2	Amp_8p11.23	0.289	1
ERCC2	Del_16p13.3	0.289	1
FBXW7	Del_2q22.1	0.289	1
KRAS	SF1	0.289	1
MLL2	20p-Amp	0.289	1
TP53	Amp_17q12	0.289	1
Amp_1p34.2	Del_2q22.1	0.289	1
Amp_5p15.33	Del_4q22.1	0.289	1
ATM	CTNNB1	0.29	1
BCL2L1	Del_15q13.1	0.29	1
ELF3	PIK3CA	0.29	1
FOXQ1	Del_4q34.2	0.29	1
PARD3	Del_2q22.1	0.29	1
1q-Amp	Del_4q34.2	0.29	1
7q-Amp	Del_4q22.1	0.29	1
Amp_8p11.21	Del_12p13.1	0.29	1
CDKN1A	GNA13	0.291	1
CDKN1A	Del_Xq21.33	0.291	1
CNNM4	Del_22q13.32	0.291	1
CNOT1	PSIP1	0.291	1
CNOT1	15q-Del	0.291	1
FAM47C	15q-Del	0.291	1
GNA13	5q-Del	0.291	1
MBD1	11q-Del	0.291	1
MBD1	5q-Del	0.291	1
PARD3	Amp_6p22.3	0.291	1
PSIP1	RAI1	0.291	1
PSIP1	RBM10	0.291	1
PSIP1	Del_10q23.31	0.291	1
RBM10	15q-Del	0.291	1
SHANK1	8q-Amp	0.291	1
SHANK1	Del_18q23	0.291	1
TMCO4	5q-Del	0.291	1
7q-Amp	Amp_3q26.33	0.291	1
15q-Del	Amp_3q26.33	0.291	1
15q-Del	Amp_11q13.3	0.291	1
17p-Del	Amp_3p25.2	0.291	1
5q-Del	Del_Xq21.33	0.291	1
9p-Del	Amp_17q23.3	0.291	1
Del_1q32.1	Del_19p13.3	0.291	1
CDKN2A	ZNF185	0.292	1
CREBBP	7p-Amp	0.292	1
HES1	Del_9p21.3	0.292	1
KLF5	Del_6q27	0.292	1
NRAS	Del_18q23	0.292	1
NUDT11	Del_18q23	0.292	1
PKHD1	Amp_17q23.3	0.292	1
PKHD1	Del_3p14.2	0.292	1
PLCXD3	RB1	0.292	1
4q-Del	Amp_7p21.1	0.292	1
4q-Del	Del_11q25	0.292	1
HES1	MBD1	0.293	1
HES1	Del_Xq21.33	0.293	1
TP53	Amp_4q13.3	0.293	1
TP53	Del_7q36.3	0.293	1
ZBTB7B	Del_Xq21.33	0.293	1
17q-Amp	Amp_6q21	0.293	1
Amp_3q26.33	Amp_8q22.3	0.293	1
Del_5q12.1	Del_12p13.1	0.293	1
ATM	KDM6A	0.294	1
FOXA1	KDM6A	0.294	1
KRAS	Del_8p23.3	0.294	1
TSC1	Amp_3q26.33	0.294	1
Amp_11q13.3	Del_4q34.2	0.294	1
C3orf70	SPTAN1	0.295	1
C3orf70	Del_13q14.2	0.295	1
CUL1	SPTAN1	0.295	1
ERBB3	17p-Del	0.295	1
METTL3	Del_13q14.2	0.295	1
PLCXD3	Del_12p13.1	0.295	1
5q-Del	Amp_1q21.3	0.295	1
6q-Del	Amp_10p14	0.295	1
ATM	EP300	0.296	1
HLA-A	Amp_4p16.3	0.296	1
METTL3	ZFP36L1	0.296	1
METTL3	Amp_22q12.2	0.296	1
MLL2	Del_9p21.3	0.296	1
RHOA	Amp_20q11.21	0.296	1
SHANK1	Amp_20q11.21	0.296	1
Amp_19q13.43	Del_12p13.1	0.296	1
ERBB3	Del_19p13.3	0.297	1
FAT1	RPTN	0.297	1
PKHD1	Amp_6p22.3	0.297	1
20q-Amp	Amp_4q13.3	0.297	1
20q-Amp	Del_7q36.3	0.297	1
DNAH6	Del_6q27	0.298	1
FGFR3	10q-Del	0.298	1
KIAA1267	Del_18q23	0.298	1
SPTAN1	Amp_1q21.3	0.298	1
STAG2	6q-Del	0.298	1
TXNIP	Del_6q27	0.298	1
TXNIP	Del_11q25	0.298	1
3q-Amp	Del_16p13.3	0.298	1
8q-Amp	16p-Del	0.298	1
6q-Del	Amp_8p11.23	0.298	1
Amp_8p11.23	Del_15q13.1	0.298	1
ERBB2	NF1	0.299	1
HLA-A	17p-Del	0.299	1
IDH1	RPTN	0.299	1
MLL2	PIK3CA	0.299	1
MLL3	Del_7q36.3	0.299	1
NRAS	11p-Del	0.299	1
RHOB	Del_22q13.32	0.299	1
UNC93B1	17p-Del	0.299	1
20q-Amp	Amp_12q15	0.299	1
20q-Amp	Del_16q23.1	0.299	1
Amp_4q13.3	Del_2q37.1	0.299	1
Amp_11q13.3	Del_18q23	0.299	1
Amp_12q15	Del_11q23.3	0.299	1
Del_6p25.3	Del_11q23.3	0.299	1
CDKN2A	FBXW7	0.3	1
RHOB	Amp_1p34.2	0.3	1
TMCO4	5p-Amp	0.3	1
TSC1	Del_Xp11.3	0.3	1
Amp_17q12	Del_8p23.3	0.3	1
FOXA1	Del_10q23.31	0.301	1
FOXQ1	Amp_3q26.33	0.301	1
FOXQ1	Amp_11q13.3	0.301	1
METTL3	SCARF2	0.301	1
1q-Amp	Del_10q23.31	0.301	1
Amp_19q12	Del_18q23	0.301	1
CNNM4	MLL	0.302	1
CNNM4	Amp_13q22.1	0.302	1
NF2	Del_16q23.1	0.302	1
SF1	Del_16q23.1	0.302	1
SHANK1	11p-Del	0.302	1
5p-Amp	Del_8p23.3	0.302	1
ASXL2	FAT1	0.303	1
ASXL2	TMCO4	0.303	1
ASXL2	Del_1q32.1	0.303	1
CUL1	TP53	0.303	1
FAT1	Amp_17q12	0.303	1
NRAS	Amp_1q23.3	0.303	1
RHOA	RXRA	0.303	1
RHOA	16p-Del	0.303	1
TXNIP	14q-Del	0.303	1
UNC93B1	Amp_1q23.3	0.303	1
Amp_17q12	Del_Xq21.33	0.303	1
CREBBP	ELF3	0.304	1
ERCC2	15q-Del	0.304	1
SCARF2	Amp_11q13.3	0.304	1
17q-Amp	Amp_8q22.3	0.304	1
CTNNB1	Amp_16p13.2	0.305	1
ERBB3	Amp_7p11.2	0.305	1
NF1	Amp_1q23.3	0.305	1
PARD3	8p-Del	0.305	1
Amp_1q23.3	Del_11q25	0.305	1
ARID1B	ERBB2	0.306	1
ARID1B	PLCXD3	0.306	1
ARID1B	Amp_19q12	0.306	1
CUL1	Del_5q12.1	0.306	1
FBXW7	Del_7q36.3	0.306	1
METTL3	9q-Del	0.306	1
PLCXD3	4q-Del	0.306	1
RHOA	Amp_6p22.3	0.306	1
RPTN	Amp_1p34.2	0.306	1
TSC1	Amp_7p11.2	0.306	1
20p-Amp	Amp_13q22.1	0.306	1
16p-Del	Amp_17q23.3	0.306	1
4q-Del	Amp_19q12	0.306	1
Amp_1p34.2	Del_7q36.3	0.306	1
Amp_11q22.2	Amp_17q23.3	0.306	1
Amp_12q15	Del_22q13.32	0.306	1
ERCC2	PIK3CA	0.307	1
MLL3	9q-Del	0.307	1
Amp_5p15.33	Del_2q22.1	0.307	1
Amp_20q11.21	Del_13q14.2	0.307	1
CDKN2A	CSMD3	0.308	1
CNNM4	CTNNB1	0.308	1
CNNM4	FOXQ1	0.308	1
CNNM4	PTEN	0.308	1
CTNNB1	SF1	0.308	1
CUL1	PIK3CA	0.308	1
NF2	THRAP3	0.308	1
PTEN	SF1	0.308	1
RHOB	STAG2	0.308	1
RHOB	Amp_8p11.23	0.308	1
SF1	1q-Amp	0.308	1
Amp_4q13.3	Del_2q34	0.308	1
BCL2L1	Amp_1q23.3	0.309	1
ERBB3	Del_4q34.2	0.309	1
HLA-A	15q-Del	0.309	1
KDM6A	Del_14q24.1	0.309	1
NRAS	15q-Del	0.309	1
NUDT11	15q-Del	0.309	1
PSIP1	UNC93B1	0.309	1
14q-Del	Amp_3q26.33	0.309	1
4p-Del	Amp_3q26.33	0.309	1
Amp_16p13.2	Del_6q27	0.309	1
KIAA1267	6q-Del	0.31	1
NFE2L2	10q-Del	0.31	1
PIK3CA	Del_2q34	0.31	1
RXRA	3q-Amp	0.31	1
RXRA	6q-Del	0.31	1
RXRA	Del_15q13.1	0.31	1
17q-Amp	Del_13q14.2	0.31	1
3q-Amp	Amp_11q22.2	0.31	1
9q-Del	Amp_8p11.23	0.31	1
9q-Del	Del_16p13.3	0.31	1
Amp_4q13.3	Amp_8q22.3	0.31	1
CNNM4	MLL2	0.311	1
FAT1	TP53	0.311	1
PARD3	7q-Amp	0.311	1
PLCXD3	Del_2q37.1	0.311	1
RHOB	9p-Del	0.311	1
SF1	Amp_3p25.2	0.311	1
7p-Amp	Del_8p23.3	0.311	1
7q-Amp	Del_12p13.1	0.311	1
Amp_16p13.2	Del_17p12	0.311	1
CDKN1A	PARD3	0.312	1
CNNM4	Amp_7p11.2	0.312	1
CNOT1	RBM10	0.312	1
NFE2L2	17p-Del	0.312	1
PARD3	Del_19p13.3	0.312	1
RXRA	11p-Del	0.312	1
17p-Del	Amp_1q23.3	0.312	1
Del_12p13.1	Del_19p13.3	0.312	1
C3orf70	CDKN2A	0.313	1
C3orf70	RHOB	0.313	1
CDKN2A	METTL3	0.313	1
CDKN2A	3p-Amp	0.313	1
CNOT1	Amp_8q22.3	0.313	1
ERBB2	Del_11p15.5	0.313	1
HES1	RUNX1	0.313	1
IDH1	PIK3CA	0.313	1
IDH1	Amp_8p11.21	0.313	1
IDH1	Del_2q22.1	0.313	1
KIAA1267	Del_11p15.5	0.313	1
KRAS	Amp_19q13.43	0.313	1
METTL3	RHOB	0.313	1
MLL2	Amp_17q12	0.313	1
PIK3CA	RUNX1	0.313	1
RUNX1	Amp_6q21	0.313	1
ZBTB7B	Del_Xp11.3	0.313	1
Amp_6q21	Del_Xp11.3	0.313	1
Amp_19q12	Del_4q34.2	0.313	1
Amp_19q13.43	Del_Xp11.3	0.313	1
ASXL2	Amp_6p22.3	0.314	1
CTNNB1	Amp_20q11.21	0.314	1
ERCC2	Amp_19q12	0.314	1
FAT1	MLL3	0.314	1
FBXW7	Del_9p23	0.314	1
FOXQ1	Amp_20q11.21	0.314	1
RBM10	9p-Del	0.314	1
STAG2	Del_14q24.1	0.314	1
THRAP3	Amp_20q11.21	0.314	1
19p-Del	Amp_5p15.33	0.314	1
CDKN2A	Del_6p25.3	0.315	1
GNA13	TMCO4	0.315	1
GNA13	Del_Xq21.33	0.315	1
MBD1	TMCO4	0.315	1
MLL	SHANK1	0.315	1
MLL2	Del_2q37.1	0.315	1
RB1	TXNIP	0.315	1
RHOA	Amp_12q15	0.315	1
RHOA	Del_16q23.1	0.315	1
RHOB	Del_6p25.3	0.315	1
TMCO4	Del_4q22.1	0.315	1
TMCO4	Del_Xq21.33	0.315	1
17q-Amp	Del_1q32.1	0.315	1
17q-Amp	Del_Xq21.33	0.315	1
Amp_10p14	Del_2q22.1	0.315	1
Del_4q22.1	Del_Xq21.33	0.315	1
Del_8p23.3	Del_18q23	0.315	1
CDKN1A	MLL3	0.316	1
EP300	KDM6A	0.316	1
KDM6A	3q-Amp	0.316	1
MLL3	Del_19p13.3	0.316	1
NF1	Del_2q37.1	0.316	1
PKHD1	Amp_22q12.2	0.316	1
RHOA	SCARF2	0.316	1
SHANK1	19p-Del	0.316	1
STAG2	15q-Del	0.316	1
TP53	Amp_11q13.3	0.316	1
15q-Del	Amp_8p11.23	0.316	1
CDKN1A	6q-Del	0.317	1
CUL1	8p-Del	0.317	1
FAM47C	Del_4q22.1	0.317	1
METTL3	8p-Del	0.317	1
NF1	17p-Del	0.317	1
PLCXD3	16p-Del	0.317	1
3p-Amp	8p-Del	0.317	1
3q-Amp	Del_19p13.3	0.317	1
Amp_17q23.3	Del_15q13.1	0.317	1
MBD1	Del_17p12	0.318	1
8q-Amp	11p-Del	0.318	1
Del_17p12	Del_Xq21.33	0.318	1
ASXL2	EP300	0.319	1
EP300	Del_10q23.31	0.319	1
FOXA1	10q-Del	0.319	1
FOXA1	6q-Del	0.319	1
FOXQ1	3q-Amp	0.319	1
FOXQ1	6q-Del	0.319	1
PTEN	10q-Del	0.319	1
PTEN	Del_15q13.1	0.319	1
THRAP3	Del_15q13.1	0.319	1
17q-Amp	9q-Del	0.319	1
1q-Amp	10q-Del	0.319	1
1q-Amp	6q-Del	0.319	1
7q-Amp	18q-Del	0.319	1
10q-Del	Del_1p36.11	0.319	1
11p-Del	Amp_17q12	0.319	1
17p-Del	Amp_11q13.3	0.319	1
6q-Del	Del_1p36.11	0.319	1
9q-Del	Del_1q32.1	0.319	1
Amp_13q22.1	Del_17p12	0.319	1
ERBB2	11p-Del	0.32	1
FBXW7	ZNF185	0.32	1
FGFR3	SCARF2	0.32	1
FGFR3	19p-Del	0.32	1
MLL3	Del_9p21.3	0.32	1
PIK3CA	Del_6q27	0.32	1
STAG2	19p-Del	0.32	1
ZNF185	Amp_1p34.2	0.32	1
11p-Del	Amp_19q12	0.32	1
19p-Del	Amp_8p11.23	0.32	1
Del_2q37.1	Del_9p21.3	0.32	1
ARID1B	Amp_19q13.43	0.321	1
ASXL2	BCL2L1	0.321	1
BCL2L1	Amp_17q12	0.321	1
C3orf70	ELF3	0.321	1
CUL1	Del_3p14.2	0.321	1
ELF3	METTL3	0.321	1
KIAA1267	Amp_7p21.1	0.321	1
NF1	RPTN	0.321	1
NF1	19q-Amp	0.321	1
NF1	Amp_4q13.3	0.321	1
NF1	Del_7q36.3	0.321	1
RHOA	ZFP36L1	0.321	1
RXRA	Del_6q27	0.321	1
RXRA	Del_11q25	0.321	1
UNC93B1	Del_13q14.2	0.321	1
20q-Amp	8p-Del	0.321	1
14q-Del	Del_9p21.3	0.321	1
4p-Del	Del_9p21.3	0.321	1
8p-Del	Del_11q23.3	0.321	1
Amp_7p21.1	Amp_11q22.2	0.321	1
Del_8p23.3	Del_11q23.3	0.321	1
CNOT1	NRAS	0.322	1
CSMD3	FOXQ1	0.322	1
CSMD3	Del_1p36.11	0.322	1
CTNNB1	STAG2	0.322	1
ERCC2	Del_14q24.1	0.322	1
FAM47C	UNC93B1	0.322	1
FBXW7	Del_11p15.5	0.322	1
FGFR3	FOXA1	0.322	1
FGFR3	Del_1p36.11	0.322	1
FOXA1	Amp_8p11.23	0.322	1
FOXQ1	Amp_8p11.23	0.322	1
HLA-A	RBM10	0.322	1
IDH1	20q-Amp	0.322	1
KDM6A	ZFP36L1	0.322	1
KDM6A	Amp_22q12.2	0.322	1
NUDT11	RAI1	0.322	1
NUDT11	RBM10	0.322	1
PTEN	Del_16p13.3	0.322	1
RAI1	UNC93B1	0.322	1
SPTAN1	20q-Amp	0.322	1
TXNIP	Amp_8p11.21	0.322	1
14q-Del	Amp_1p34.2	0.322	1
BCL2L1	MLL2	0.323	1
CTNNB1	Amp_6p22.3	0.323	1
Amp_1p34.2	Del_14q24.1	0.323	1
ARID1A	ERCC2	0.324	1
ERCC2	Amp_5p15.33	0.324	1
RB1	20p-Amp	0.324	1
ARID1B	TP53	0.325	1
CNNM4	Del_8p21.3	0.325	1
CNOT1	Del_10q23.31	0.325	1
ERBB2	Amp_16p13.2	0.325	1
ERBB2	Amp_17q23.3	0.325	1
FAM47C	Del_10q23.31	0.325	1
KIAA1267	Amp_3p25.2	0.325	1
PSIP1	Del_8p23.3	0.325	1
RAI1	Amp_11q13.3	0.325	1
RBM10	Amp_3q26.33	0.325	1
RXRA	Amp_3p25.2	0.325	1
20p-Amp	14q-Del	0.325	1
8q-Amp	Del_2q22.1	0.325	1
16p-Del	Amp_3p25.2	0.325	1
22q-Del	Amp_3p25.2	0.325	1
Amp_3p25.2	Amp_11q22.2	0.325	1
Amp_19q12	Del_3p14.2	0.325	1
Del_2q22.1	Del_18q23	0.325	1
CDKN1A	Del_Xp11.3	0.326	1
CNNM4	19q-Amp	0.326	1
CNNM4	Amp_4q13.3	0.326	1
CREBBP	Amp_7p21.1	0.326	1
CSMD3	Del_3p14.2	0.326	1
ELF3	FGFR3	0.326	1
ELF3	STAG2	0.326	1
FAT1	Del_9p21.3	0.326	1
FGFR3	Amp_17q23.3	0.326	1
KDM6A	Del_5q12.1	0.326	1
NF2	Del_7q36.3	0.326	1
RUNX1	Del_19p13.3	0.326	1
SF1	19q-Amp	0.326	1
SPTAN1	Del_22q13.32	0.326	1
20p-Amp	Amp_7p11.2	0.326	1
Amp_8p11.23	Amp_17q23.3	0.326	1
Amp_17q23.3	Del_13q14.2	0.326	1
ERCC2	GNA13	0.327	1
ERCC2	17q-Amp	0.327	1
ERCC2	Del_1q32.1	0.327	1
ERCC2	Del_Xq21.33	0.327	1
METTL3	Del_9p23	0.327	1
MLL2	RB1	0.327	1
Amp_12q15	Amp_13q22.1	0.327	1
ARID1A	Del_2q37.1	0.328	1
ASXL2	PARD3	0.328	1
HLA-A	9q-Del	0.328	1
KIAA1267	TSC1	0.328	1
MLL3	Amp_5p15.33	0.328	1
NRAS	Del_5q12.1	0.328	1
PLCXD3	Amp_22q12.2	0.328	1
RPTN	Del_11p15.5	0.328	1
RXRA	TSC1	0.328	1
UNC93B1	Del_5q12.1	0.328	1
8q-Amp	Amp_4p16.3	0.328	1
8q-Amp	Amp_13q22.1	0.328	1
Amp_4q13.3	Del_11p15.5	0.328	1
ARID1B	Del_5q12.1	0.329	1
C3orf70	14q-Del	0.33	1
C3orf70	4p-Del	0.33	1
CUL1	14q-Del	0.33	1
NF1	ZNF185	0.33	1
NRAS	Del_9p21.3	0.33	1
NUDT11	Del_9p21.3	0.33	1
TP53	Amp_22q12.2	0.33	1
19q-Amp	Del_4q34.2	0.33	1
8q-Amp	Del_4q22.1	0.33	1
CDKN2A	SPTAN1	0.331	1
KLF5	7q-Amp	0.331	1
7q-Amp	4q-Del	0.331	1
ARID1B	Amp_5p15.33	0.332	1
C3orf70	IDH1	0.332	1
CNNM4	ELF3	0.332	1
CNNM4	Del_3p14.2	0.332	1
IDH1	METTL3	0.332	1
NF1	Del_11q23.3	0.332	1
RB1	Del_4q22.1	0.332	1
THRAP3	Amp_1q21.3	0.332	1
Amp_1q21.3	Del_1p36.11	0.332	1
C3orf70	Del_6q27	0.333	1
CNOT1	ERCC2	0.333	1
CREBBP	5p-Amp	0.333	1
CTNNB1	HES1	0.333	1
ERCC2	FAM47C	0.333	1
ERCC2	RBM10	0.333	1
FOXQ1	TSC1	0.333	1
FOXQ1	Amp_6q21	0.333	1
METTL3	Del_11q25	0.333	1
PTEN	ZBTB7B	0.333	1
THRAP3	ZBTB7B	0.333	1
Amp_16p13.2	Del_4q22.1	0.333	1
Amp_19q12	Del_10q23.31	0.333	1
DNAH6	Del_11q23.3	0.334	1
FAT1	TXNIP	0.334	1
10q-Del	Amp_22q12.2	0.334	1
Amp_20q11.21	Del_2q34	0.334	1
Amp_22q12.2	Del_15q13.1	0.334	1
ARID1A	ELF3	0.335	1
ATM	Del_2q22.1	0.335	1
CDKN1A	Amp_12q15	0.335	1
ELF3	ZFP36L1	0.335	1
FBXW7	TXNIP	0.335	1
HLA-A	PARD3	0.335	1
MLL	Del_19p13.3	0.335	1
MLL2	PSIP1	0.335	1
MLL2	15q-Del	0.335	1
NUDT11	8p-Del	0.335	1
TP53	Amp_20q11.21	0.335	1
TXNIP	Amp_1p34.2	0.335	1
UNC93B1	8p-Del	0.335	1
UNC93B1	Del_12p13.1	0.335	1
20q-Amp	4q-Del	0.335	1
11q-Del	Del_6p25.3	0.335	1
Amp_5p15.33	Del_3p14.2	0.335	1
Amp_8q22.3	Del_2q22.1	0.335	1
BCL2L1	ERCC2	0.336	1
CDKN2A	PIK3CA	0.336	1
CSMD3	Del_4q34.2	0.336	1
ERBB3	Amp_1q23.3	0.336	1
MLL3	ZBTB7B	0.336	1
PKHD1	RPTN	0.336	1
PLCXD3	Amp_3p25.2	0.336	1
RXRA	Amp_19q12	0.336	1
STAG2	Del_4q34.2	0.336	1
22q-Del	Amp_19q12	0.336	1
ASXL2	3q-Amp	0.337	1
FGFR3	Del_2q37.1	0.337	1
GNA13	RUNX1	0.337	1
KRAS	17q-Amp	0.337	1
KRAS	Del_1q32.1	0.337	1
MBD1	RUNX1	0.337	1
MLL2	20q-Amp	0.337	1
RUNX1	Del_1q32.1	0.337	1
TMCO4	Del_Xp11.3	0.337	1
17q-Amp	Amp_10p14	0.337	1
3q-Amp	Amp_17q12	0.337	1
6q-Del	Amp_17q12	0.337	1
Amp_3p25.2	Del_7q36.3	0.337	1
Amp_10p14	Del_Xq21.33	0.337	1
Amp_17q12	Del_15q13.1	0.337	1
Del_1q32.1	Del_Xp11.3	0.337	1
ARID1B	CDKN1A	0.338	1
CSMD3	4p-Del	0.338	1
ERBB2	Del_14q24.1	0.338	1
FGFR3	14q-Del	0.338	1
KLF5	5q-Del	0.338	1
RXRA	5p-Amp	0.338	1
STAG2	14q-Del	0.338	1
TSC1	Del_19p13.3	0.338	1
7p-Amp	5q-Del	0.338	1
18q-Del	Amp_19q12	0.338	1
4p-Del	Amp_8p11.23	0.338	1
ASXL2	KRAS	0.339	1
GNA13	18q-Del	0.339	1
KIAA1267	Amp_1q23.3	0.339	1
MLL2	Amp_10p14	0.339	1
RB1	Del_15q13.1	0.339	1
RUNX1	Amp_17q12	0.339	1
RXRA	Amp_1q23.3	0.339	1
17q-Amp	Del_14q24.1	0.339	1
3q-Amp	9p-Del	0.339	1
10q-Del	9p-Del	0.339	1
22q-Del	Amp_1q23.3	0.339	1
Amp_1q23.3	Amp_11q22.2	0.339	1
Amp_17q12	Del_Xp11.3	0.339	1
Del_14q24.1	Del_Xq21.33	0.339	1
20q-Amp	Amp_5p15.33	0.34	1
20q-Amp	Amp_10p14	0.34	1
7q-Amp	Del_17p12	0.34	1
PIK3CA	Del_14q24.1	0.341	1
20q-Amp	Amp_1q21.3	0.341	1
7p-Amp	8p-Del	0.341	1
Amp_6p22.3	Amp_17q23.3	0.341	1
ARID1A	GNA13	0.342	1
ARID1A	MBD1	0.342	1
ARID1A	Del_1q32.1	0.342	1
C3orf70	Del_8p23.3	0.342	1
CNNM4	Amp_7p21.1	0.342	1
CNNM4	Del_6q27	0.342	1
CNNM4	Del_11q25	0.342	1
CREBBP	NF2	0.342	1
CUL1	Del_8p23.3	0.342	1
METTL3	Del_8p23.3	0.342	1
RPTN	Amp_3q26.33	0.342	1
SF1	Amp_6p22.3	0.342	1
SF1	Amp_7p21.1	0.342	1
17q-Amp	Amp_5p15.33	0.342	1
19q-Amp	Del_10q23.31	0.342	1
4p-Del	Amp_13q22.1	0.342	1
Amp_1q23.3	Del_1p36.11	0.343	1
Amp_8p11.21	Amp_16p13.2	0.343	1
Amp_17q23.3	Del_8p21.3	0.343	1
ARID1B	Amp_1q21.3	0.344	1
BCL2L1	18q-Del	0.344	1
CNNM4	DNAH6	0.344	1
ERBB3	Amp_1q21.3	0.344	1
HES1	Amp_12q15	0.344	1
HRAS	SF1	0.344	1
MLL	Amp_6q21	0.344	1
9p-Del	Amp_19q12	0.344	1
Amp_8p11.23	Del_18q23	0.344	1
EP300	Amp_22q12.2	0.345	1
ERBB3	Amp_17q23.3	0.345	1
PARD3	Del_4q34.2	0.345	1
PSIP1	19p-Del	0.345	1
SCARF2	7q-Amp	0.345	1
11p-Del	Amp_22q12.2	0.345	1
15q-Del	19p-Del	0.345	1
16p-Del	Del_17p12	0.345	1
Del_4q22.1	Del_12p13.1	0.345	1
C3orf70	Amp_19q12	0.346	1
CUL1	ERBB2	0.346	1
CUL1	Amp_19q12	0.346	1
MLL3	Amp_3p25.2	0.346	1
RB1	14q-Del	0.346	1
RXRA	Amp_19q13.43	0.346	1
TXNIP	Del_2q37.1	0.346	1
3p-Amp	Amp_19q12	0.346	1
17p-Del	Amp_13q22.1	0.346	1
Amp_17q23.3	Del_2q22.1	0.346	1
ARID1B	NUDT11	0.347	1
FOXA1	Amp_19q13.43	0.347	1
HLA-A	KLF5	0.347	1
HLA-A	4q-Del	0.347	1
NUDT11	4q-Del	0.347	1
PKHD1	17p-Del	0.347	1
1q-Amp	Amp_19q13.43	0.347	1
11p-Del	Amp_16p13.2	0.347	1
11p-Del	Del_4q22.1	0.347	1
17p-Del	Amp_16p13.2	0.347	1
5q-Del	Amp_11q13.3	0.347	1
Amp_19q13.43	Del_1p36.11	0.347	1
MLL	SPTAN1	0.348	1
NF1	Del_14q24.1	0.348	1
RAI1	18q-Del	0.348	1
ZNF185	6q-Del	0.348	1
Del_9p21.3	Del_15q13.1	0.348	1
CNOT1	MLL3	0.349	1
ERBB3	PSIP1	0.349	1
KDM6A	Del_9p23	0.349	1
KRAS	5p-Amp	0.349	1
NF1	Del_2q34	0.349	1
RUNX1	5p-Amp	0.349	1
20q-Amp	Del_18q23	0.349	1
8q-Amp	Del_11q23.3	0.349	1
ARID1A	Amp_16p13.2	0.35	1
CDKN2A	Del_2q37.1	0.35	1
CNNM4	Amp_1q21.3	0.35	1
CREBBP	CSMD3	0.35	1
CREBBP	FGFR3	0.35	1
DNAH6	NF1	0.35	1
PLCXD3	4p-Del	0.35	1
PSIP1	Amp_11q22.2	0.35	1
STAG2	Del_11q25	0.35	1
7q-Amp	22q-Del	0.35	1
18q-Del	Amp_3p25.2	0.35	1
Amp_8p11.23	Del_6q27	0.35	1
Amp_16p13.2	Del_2q37.1	0.35	1
CNOT1	Amp_8p11.23	0.351	1
CSMD3	RAI1	0.351	1
CSMD3	Amp_10p14	0.351	1
RAI1	Del_16p13.3	0.351	1
RBM10	Amp_8p11.23	0.351	1
RBM10	Del_16p13.3	0.351	1
ZFP36L1	Del_11q25	0.351	1
19q-Amp	3q-Amp	0.351	1
19q-Amp	Del_15q13.1	0.351	1
10q-Del	Amp_4q13.3	0.351	1
Amp_8p11.23	Amp_10p14	0.351	1
Amp_8q22.3	Del_4q22.1	0.351	1
Del_7q36.3	Del_15q13.1	0.351	1
ASXL2	5p-Amp	0.352	1
CNNM4	ERBB2	0.352	1
CSMD3	Del_17p12	0.352	1
ERBB2	NF2	0.352	1
ERBB2	10q-Del	0.352	1
KRAS	Del_4q22.1	0.352	1
RUNX1	Del_4q22.1	0.352	1
SF1	Amp_19q12	0.352	1
5p-Amp	Amp_17q12	0.352	1
10q-Del	Amp_19q12	0.352	1
Amp_1p34.2	Del_4q34.2	0.352	1
Amp_4p16.3	Amp_6p22.3	0.352	1
Del_4q22.1	Del_Xp11.3	0.352	1
Del_11q25	Del_13q14.2	0.352	1
ARID1B	FAM47C	0.353	1
ARID1B	RBM10	0.353	1
FAM47C	KLF5	0.353	1
HES1	RPTN	0.353	1
HES1	19q-Amp	0.353	1
KDM6A	SCARF2	0.353	1
PSIP1	Amp_3p25.2	0.353	1
RAI1	7p-Amp	0.353	1
SCARF2	Del_18q23	0.353	1
ZBTB7B	Del_7q36.3	0.353	1
19p-Del	Del_18q23	0.353	1
9p-Del	Amp_12q15	0.353	1
Amp_4q13.3	Amp_6q21	0.353	1
Amp_6p22.3	Del_5q12.1	0.353	1
Amp_6q21	Del_7q36.3	0.353	1
FGFR3	Amp_19q13.43	0.354	1
SPTAN1	11q-Del	0.354	1
ARID1B	ASXL2	0.355	1
ARID1B	Amp_17q12	0.355	1
ASXL2	KLF5	0.355	1
ELF3	SHANK1	0.355	1
KDM6A	RPTN	0.355	1
KDM6A	19q-Amp	0.355	1
PSIP1	Del_8p21.3	0.355	1
SPTAN1	Amp_6q21	0.355	1
4q-Del	Amp_17q12	0.355	1
ASXL2	ATM	0.356	1
RHOA	4p-Del	0.356	1
5p-Amp	Del_8p21.3	0.356	1
Amp_17q12	Del_4q34.2	0.356	1
ELF3	Del_9p21.3	0.357	1
ATM	Del_16q23.1	0.358	1
BCL2L1	ERBB3	0.358	1
CDKN2A	3q-Amp	0.358	1
CTNNB1	TMCO4	0.358	1
CTNNB1	Del_1q32.1	0.358	1
FOXA1	Del_1q32.1	0.358	1
FOXA1	Del_Xq21.33	0.358	1
FOXQ1	MBD1	0.358	1
FOXQ1	Del_1q32.1	0.358	1
GNA13	THRAP3	0.358	1
IDH1	Amp_11q13.3	0.358	1
KDM6A	Amp_8q22.3	0.358	1
MBD1	1q-Amp	0.358	1
PKHD1	Amp_8q22.3	0.358	1
RHOB	10q-Del	0.358	1
RHOB	6q-Del	0.358	1
RHOB	Del_15q13.1	0.358	1
THRAP3	TMCO4	0.358	1
17q-Amp	1q-Amp	0.358	1
18q-Del	Amp_8p11.21	0.358	1
18q-Del	Del_2q22.1	0.358	1
Del_2q22.1	Del_14q24.1	0.358	1
Del_4q34.2	Del_11q23.3	0.358	1
ASXL2	Amp_13q22.1	0.359	1
ASXL2	Del_6p25.3	0.359	1
ASXL2	Del_16q23.1	0.359	1
C3orf70	Amp_8p11.21	0.359	1
CNOT1	SCARF2	0.359	1
CSMD3	Amp_11q13.3	0.359	1
KRAS	RUNX1	0.359	1
METTL3	Del_2q22.1	0.359	1
RAI1	SCARF2	0.359	1
RBM10	SCARF2	0.359	1
RUNX1	Del_13q14.2	0.359	1
4p-Del	Amp_7p11.2	0.359	1
8p-Del	Amp_1p34.2	0.359	1
Amp_3p25.2	Del_2q22.1	0.359	1
Amp_3q26.33	Amp_8p11.23	0.359	1
Amp_17q12	Del_6p25.3	0.359	1
Del_10q23.31	Del_12p13.1	0.359	1
C3orf70	RB1	0.36	1
ERBB3	Amp_1p34.2	0.36	1
FAT1	Amp_16p13.2	0.36	1
FOXQ1	Del_8p23.3	0.36	1
HLA-A	16p-Del	0.36	1
NRAS	Amp_11q22.2	0.36	1
NUDT11	RXRA	0.36	1
NUDT11	16p-Del	0.36	1
NUDT11	Amp_11q22.2	0.36	1
PTEN	Del_8p23.3	0.36	1
RXRA	UNC93B1	0.36	1
20p-Amp	Amp_6p22.3	0.36	1
Del_1p36.11	Del_8p23.3	0.36	1
ARID1A	Del_14q24.1	0.361	1
CDKN1A	PTEN	0.361	1
CDKN1A	1q-Amp	0.361	1
EP300	19p-Del	0.361	1
ERCC2	Del_12p13.1	0.361	1
FOXA1	5q-Del	0.361	1
KIAA1267	Del_8p23.3	0.361	1
SPTAN1	Amp_4p16.3	0.361	1
5p-Amp	Amp_3q26.33	0.361	1
5p-Amp	Amp_11q13.3	0.361	1
11q-Del	Del_1p36.11	0.361	1
17p-Del	19p-Del	0.361	1
5q-Del	Del_1p36.11	0.361	1
Amp_11q22.2	Amp_20q11.21	0.361	1
Del_1p36.11	Del_19p13.3	0.361	1
ARID1A	ZNF185	0.362	1
C3orf70	NF2	0.362	1
CNNM4	CUL1	0.362	1
CNNM4	Del_2q22.1	0.362	1
CUL1	NF2	0.362	1
METTL3	NF2	0.362	1
METTL3	SF1	0.362	1
SF1	Amp_8p11.21	0.362	1
5p-Amp	8p-Del	0.362	1
9p-Del	Amp_3q26.33	0.362	1
Amp_1q21.3	Del_4q22.1	0.362	1
C3orf70	Amp_1p34.2	0.363	1
ERBB3	Del_1q32.1	0.363	1
ERBB3	Del_Xq21.33	0.363	1
PIK3CA	8p-Del	0.363	1
CDKN1A	16p-Del	0.364	1
CDKN2A	ELF3	0.364	1
CDKN2A	Amp_17q23.3	0.364	1
CSMD3	Amp_4q13.3	0.364	1
ELF3	8p-Del	0.364	1
HLA-A	9p-Del	0.364	1
IDH1	Amp_4p16.3	0.364	1
KIAA1267	5q-Del	0.364	1
NFE2L2	5q-Del	0.364	1
PSIP1	Del_22q13.32	0.364	1
RHOB	Amp_4p16.3	0.364	1
RHOB	Amp_17q23.3	0.364	1
RXRA	5q-Del	0.364	1
TP53	Del_6q27	0.364	1
ZFP36L1	Amp_3p25.2	0.364	1
19q-Amp	Del_16p13.3	0.364	1
20p-Amp	15q-Del	0.364	1
7q-Amp	Del_22q13.32	0.364	1
CDKN2A	Del_18q23	0.365	1
ERBB3	Del_8p23.3	0.365	1
FOXA1	8q-Amp	0.365	1
FOXA1	Del_9p21.3	0.365	1
FOXQ1	Del_18q23	0.365	1
GNA13	RB1	0.365	1
HES1	Amp_1q23.3	0.365	1
NF1	Del_8p21.3	0.365	1
NFE2L2	Del_5q12.1	0.365	1
RB1	TMCO4	0.365	1
RHOB	Del_18q23	0.365	1
RPTN	TSC1	0.365	1
THRAP3	Del_18q23	0.365	1
17q-Amp	9p-Del	0.365	1
1q-Amp	8q-Amp	0.365	1
1q-Amp	Del_9p21.3	0.365	1
8q-Amp	Del_1p36.11	0.365	1
9p-Del	Del_1q32.1	0.365	1
ARID1A	Amp_13q22.1	0.366	1
BCL2L1	Del_22q13.32	0.366	1
CSMD3	17p-Del	0.366	1
DNAH6	PKHD1	0.366	1
DNAH6	Amp_16p13.2	0.366	1
EP300	Amp_8p11.23	0.366	1
ERBB3	FGFR3	0.366	1
HRAS	PKHD1	0.366	1
STAG2	11p-Del	0.366	1
19q-Amp	Amp_20q11.21	0.366	1
Del_9p23	Del_16p13.3	0.366	1
ERBB2	Amp_22q12.2	0.367	1
FAT1	KIAA1267	0.367	1
PSIP1	8q-Amp	0.367	1
RXRA	20q-Amp	0.367	1
20q-Amp	16p-Del	0.367	1
7q-Amp	Del_18q23	0.367	1
BCL2L1	Amp_8q22.3	0.368	1
ELF3	Del_11q23.3	0.368	1
ELF3	Del_22q13.32	0.368	1
FAT1	Amp_17q23.3	0.368	1
FAT1	Del_3p14.2	0.368	1
KDM6A	RHOB	0.368	1
MLL2	1q-Amp	0.368	1
20q-Amp	Del_3p14.2	0.368	1
Amp_1p34.2	Del_10q23.31	0.368	1
ARID1A	CREBBP	0.369	1
C3orf70	Del_8p21.3	0.369	1
CREBBP	Amp_5p15.33	0.369	1
CREBBP	Amp_8p11.21	0.369	1
ERBB2	Amp_19q12	0.369	1
PIK3CA	THRAP3	0.369	1
RHOA	Amp_7p21.1	0.369	1
SHANK1	Amp_7p21.1	0.369	1
SHANK1	Del_11q25	0.369	1
Amp_5p15.33	Del_11q25	0.369	1
Amp_8p11.21	Del_6q27	0.369	1
Del_2q22.1	Del_6q27	0.369	1
ATM	DNAH6	0.37	1
SHANK1	Amp_10p14	0.37	1
15q-Del	Amp_22q12.2	0.37	1
6q-Del	Del_2q22.1	0.37	1
Amp_1q21.3	Del_2q34	0.37	1
Amp_8q22.3	Del_12p13.1	0.37	1
ARID1A	7q-Amp	0.371	1
ARID1A	15q-Del	0.371	1
KDM6A	Amp_19q12	0.371	1
PSIP1	Amp_5p15.33	0.371	1
RB1	Del_2q22.1	0.371	1
7q-Amp	Amp_5p15.33	0.371	1
Del_4q22.1	Del_9p21.3	0.371	1
C3orf70	Del_11q23.3	0.372	1
CDKN1A	8p-Del	0.372	1
CNNM4	Del_11q23.3	0.372	1
CUL1	FAT1	0.372	1
DNAH6	ZBTB7B	0.372	1
FAT1	METTL3	0.372	1
FAT1	NF2	0.372	1
HES1	HRAS	0.372	1
KDM6A	Del_4q22.1	0.372	1
NF1	Amp_3p25.2	0.372	1
SF1	Del_11q23.3	0.372	1
TSC1	9p-Del	0.372	1
TXNIP	ZBTB7B	0.372	1
BCL2L1	MLL	0.373	1
BCL2L1	Amp_12q15	0.373	1
BCL2L1	Amp_13q22.1	0.373	1
PARD3	19p-Del	0.373	1
SPTAN1	17p-Del	0.373	1
ASXL2	1q-Amp	0.374	1
CNOT1	RXRA	0.374	1
CNOT1	22q-Del	0.374	1
FOXA1	Amp_17q12	0.374	1
KIAA1267	RAI1	0.374	1
RAI1	Amp_11q22.2	0.374	1
RBM10	22q-Del	0.374	1
THRAP3	Amp_17q12	0.374	1
TP53	17p-Del	0.374	1
1q-Amp	Amp_17q12	0.374	1
Amp_17q12	Del_10q23.31	0.374	1
ARID1B	PARD3	0.375	1
EP300	FOXA1	0.375	1
EP300	Del_1p36.11	0.375	1
FOXA1	17p-Del	0.375	1
GNA13	Del_22q13.32	0.375	1
MBD1	20p-Amp	0.375	1
MBD1	Del_22q13.32	0.375	1
PARD3	7p-Amp	0.375	1
THRAP3	17p-Del	0.375	1
TMCO4	20p-Amp	0.375	1
ZNF185	11q-Del	0.375	1
20p-Amp	Del_1q32.1	0.375	1
7p-Amp	Del_12p13.1	0.375	1
11p-Del	Del_1p36.11	0.375	1
Del_22q13.32	Del_Xq21.33	0.375	1
ERCC2	11p-Del	0.376	1
TP53	Del_5q12.1	0.376	1
TXNIP	Amp_8q22.3	0.376	1
Amp_6p22.3	Del_7q36.3	0.376	1
FAT1	18q-Del	0.377	1
RHOB	TSC1	0.377	1
SCARF2	5p-Amp	0.377	1
20p-Amp	Amp_1q21.3	0.377	1
18q-Del	Del_Xp11.3	0.377	1
5q-Del	Amp_3p25.2	0.377	1
Amp_1q23.3	Amp_8p11.23	0.377	1
EP300	6q-Del	0.378	1
GNA13	19q-Amp	0.378	1
MBD1	RPTN	0.378	1
MBD1	TP53	0.378	1
MBD1	Amp_4q13.3	0.378	1
NRAS	Amp_8q22.3	0.378	1
RPTN	TMCO4	0.378	1
RPTN	17q-Amp	0.378	1
RPTN	Del_1q32.1	0.378	1
RPTN	Del_Xq21.33	0.378	1
TMCO4	Del_7q36.3	0.378	1
17q-Amp	Amp_4q13.3	0.378	1
19q-Amp	Del_1q32.1	0.378	1
Amp_1p34.2	Del_22q13.32	0.378	1
Amp_3q26.33	Amp_13q22.1	0.378	1
Amp_4q13.3	Del_Xq21.33	0.378	1
ARID1A	RXRA	0.379	1
ATM	7p-Amp	0.379	1
CNOT1	Del_9p21.3	0.379	1
EP300	PSIP1	0.379	1
ERBB2	Del_13q14.2	0.379	1
IDH1	PSIP1	0.379	1
IDH1	15q-Del	0.379	1
MLL	PSIP1	0.379	1
MLL	7q-Amp	0.379	1
NF2	RHOA	0.379	1
RHOA	SF1	0.379	1
SF1	SHANK1	0.379	1
7q-Amp	Amp_13q22.1	0.379	1
15q-Del	Amp_12q15	0.379	1
15q-Del	Amp_13q22.1	0.379	1
Amp_19q12	Del_13q14.2	0.379	1
CDKN2A	EP300	0.38	1
CNNM4	Amp_8q22.3	0.38	1
CNOT1	ERBB3	0.38	1
METTL3	NF1	0.38	1
NF1	3p-Amp	0.38	1
RHOB	11p-Del	0.38	1
RHOB	Del_6q27	0.38	1
RHOB	Del_11q25	0.38	1
Amp_4q13.3	Amp_19q13.43	0.38	1
ARID1A	Amp_10p14	0.381	1
FOXQ1	KRAS	0.381	1
FOXQ1	Del_Xp11.3	0.381	1
KRAS	PTEN	0.381	1
KRAS	1q-Amp	0.381	1
NF2	PIK3CA	0.381	1
RUNX1	1q-Amp	0.381	1
ASXL2	NFE2L2	0.382	1
ASXL2	16p-Del	0.382	1
ASXL2	Amp_19q13.43	0.382	1
CDKN1A	Del_19p13.3	0.382	1
CNNM4	Del_2q34	0.382	1
CREBBP	Del_8p21.3	0.382	1
DNAH6	10q-Del	0.382	1
FGFR3	5q-Del	0.382	1
NF2	Del_2q34	0.382	1
RHOA	Amp_1q23.3	0.382	1
SF1	Del_2q34	0.382	1
SHANK1	Amp_1q23.3	0.382	1
SHANK1	Amp_19q12	0.382	1
SPTAN1	Del_4q34.2	0.382	1
STAG2	11q-Del	0.382	1
TXNIP	6q-Del	0.382	1
ZFP36L1	Amp_8p11.21	0.382	1
16p-Del	Amp_17q12	0.382	1
Amp_8q22.3	Del_9p23	0.382	1
Amp_13q22.1	Del_4q22.1	0.382	1
Amp_17q12	Amp_19q13.43	0.382	1
Del_4q22.1	Del_6p25.3	0.382	1
TXNIP	Amp_3q26.33	0.383	1
TXNIP	Amp_11q13.3	0.383	1
TXNIP	Del_10q23.31	0.383	1
ASXL2	ZNF185	0.384	1
MLL3	10q-Del	0.384	1
RHOB	UNC93B1	0.384	1
HLA-A	MLL3	0.385	1
MLL2	Del_5q12.1	0.385	1
MLL3	UNC93B1	0.385	1
RAI1	Del_11p15.5	0.385	1
Del_1p36.11	Del_8p21.3	0.385	1
ASXL2	9q-Del	0.386	1
ERBB3	Amp_19q12	0.386	1
KLF5	SCARF2	0.386	1
KLF5	19p-Del	0.386	1
METTL3	Del_17p12	0.386	1
NF1	Amp_1p34.2	0.386	1
RPTN	Amp_1q21.3	0.386	1
SCARF2	7p-Amp	0.386	1
THRAP3	TP53	0.386	1
19q-Amp	Amp_1q21.3	0.386	1
8q-Amp	Del_14q24.1	0.386	1
Amp_1q21.3	Amp_11q22.2	0.386	1
ERBB3	Del_14q24.1	0.387	1
FAT1	3q-Amp	0.387	1
FGFR3	Del_12p13.1	0.387	1
MBD1	Amp_13q22.1	0.387	1
MBD1	Del_6p25.3	0.387	1
MLL	Del_1q32.1	0.387	1
MLL	Del_Xq21.33	0.387	1
TMCO4	Amp_13q22.1	0.387	1
TMCO4	Del_6p25.3	0.387	1
17q-Amp	Amp_12q15	0.387	1
17q-Amp	Del_6p25.3	0.387	1
20q-Amp	3q-Amp	0.387	1
15q-Del	Amp_20q11.21	0.387	1
Amp_8p11.23	Del_12p13.1	0.387	1
Amp_13q22.1	Del_1q32.1	0.387	1
Amp_22q12.2	Del_13q14.2	0.387	1
CDKN1A	Amp_10p14	0.388	1
CREBBP	Amp_6q21	0.388	1
FOXA1	Del_4q22.1	0.388	1
MLL3	14q-Del	0.388	1
THRAP3	Del_4q22.1	0.388	1
ZBTB7B	Del_6q27	0.388	1
1q-Amp	Del_9p23	0.388	1
Amp_6q21	Del_6q27	0.388	1
CREBBP	Del_22q13.32	0.389	1
ERBB3	Del_17p12	0.389	1
ERCC2	KLF5	0.389	1
PSIP1	RHOB	0.389	1
Amp_7p21.1	Del_22q13.32	0.389	1
Del_11q25	Del_22q13.32	0.389	1
ARID1A	KDM6A	0.39	1
C3orf70	HES1	0.39	1
CUL1	HES1	0.39	1
CUL1	Amp_6q21	0.39	1
ERBB3	Amp_8q22.3	0.39	1
HES1	METTL3	0.39	1
METTL3	ZBTB7B	0.39	1
METTL3	Amp_6q21	0.39	1
11q-Del	Amp_22q12.2	0.39	1
Amp_4p16.3	Amp_17q23.3	0.39	1
Amp_4p16.3	Del_3p14.2	0.39	1
Del_1q32.1	Del_9p21.3	0.39	1
ARID1A	3q-Amp	0.391	1
FBXW7	SHANK1	0.391	1
KDM6A	TMCO4	0.391	1
KDM6A	Del_Xq21.33	0.391	1
MLL3	PARD3	0.391	1
MLL3	Del_12p13.1	0.391	1
PARD3	Del_2q37.1	0.391	1
SHANK1	Amp_1p34.2	0.391	1
Amp_1p34.2	Del_17p12	0.391	1
Amp_12q15	Amp_17q23.3	0.391	1
Amp_13q22.1	Amp_17q23.3	0.391	1
EP300	Amp_1q21.3	0.392	1
ERBB2	Del_2q22.1	0.392	1
IDH1	Amp_5p15.33	0.392	1
KDM6A	Del_16p13.3	0.392	1
KIAA1267	Amp_10p14	0.392	1
PIK3CA	PLCXD3	0.392	1
PKHD1	PLCXD3	0.392	1
20p-Amp	Amp_8p11.23	0.392	1
17p-Del	Amp_1q21.3	0.392	1
Amp_6p22.3	Amp_12q15	0.392	1
Amp_19q12	Del_2q22.1	0.392	1
C3orf70	MLL3	0.393	1
CDKN1A	ELF3	0.393	1
CUL1	MLL3	0.393	1
ELF3	11q-Del	0.393	1
GNA13	Del_2q37.1	0.393	1
MLL3	3p-Amp	0.393	1
RB1	Del_14q24.1	0.393	1
7p-Amp	Amp_11q13.3	0.393	1
8q-Amp	Amp_1q23.3	0.393	1
19p-Del	9q-Del	0.393	1
BCL2L1	Del_3p14.2	0.394	1
CDKN1A	19q-Amp	0.394	1
CNOT1	IDH1	0.394	1
FAM47C	ZFP36L1	0.394	1
IDH1	RAI1	0.394	1
KIAA1267	Del_8p21.3	0.394	1
PSIP1	SPTAN1	0.394	1
RAI1	ZFP36L1	0.394	1
5q-Del	Del_7q36.3	0.394	1
CNNM4	Amp_4p16.3	0.395	1
FAM47C	20p-Amp	0.395	1
FBXW7	Amp_12q15	0.396	1
HLA-A	14q-Del	0.396	1
HLA-A	4p-Del	0.396	1
NRAS	14q-Del	0.396	1
NUDT11	14q-Del	0.396	1
RHOA	Amp_8p11.21	0.396	1
UNC93B1	14q-Del	0.396	1
22q-Del	Del_12p13.1	0.396	1
Amp_1p34.2	Amp_13q22.1	0.396	1
CNOT1	Amp_3p25.2	0.397	1
DNAH6	TSC1	0.397	1
3q-Amp	18q-Del	0.397	1
7p-Amp	4q-Del	0.397	1
DNAH6	Del_Xq21.33	0.398	1
GNA13	TXNIP	0.398	1
HRAS	17q-Amp	0.398	1
SPTAN1	Del_Xq21.33	0.398	1
TXNIP	Del_1q32.1	0.398	1
TXNIP	Del_Xq21.33	0.398	1
ZFP36L1	20q-Amp	0.398	1
ZFP36L1	Del_11q23.3	0.398	1
17q-Amp	Amp_7p11.2	0.398	1
Amp_7p11.2	Del_Xq21.33	0.398	1
Amp_22q12.2	Del_11q23.3	0.398	1
ARID1B	KDM6A	0.399	1
ERBB2	HES1	0.399	1
FGFR3	Del_2q22.1	0.399	1
HES1	Amp_19q12	0.399	1
KDM6A	7p-Amp	0.399	1
PSIP1	Amp_6p22.3	0.399	1
KIAA1267	SCARF2	0.4	1
NFE2L2	SCARF2	0.4	1
PIK3CA	Amp_3q26.33	0.4	1
PIK3CA	Del_10q23.31	0.4	1
RXRA	SCARF2	0.4	1
SCARF2	16p-Del	0.4	1
TP53	7q-Amp	0.4	1
11q-Del	Del_8p23.3	0.4	1
16p-Del	19p-Del	0.4	1
19p-Del	Amp_11q22.2	0.4	1
ARID1A	Amp_7p11.2	0.401	1
ATM	NF2	0.401	1
CSMD3	Amp_1p34.2	0.401	1
ERBB2	MLL3	0.401	1
ERBB2	Del_2q37.1	0.401	1
ERCC2	FOXA1	0.401	1
ERCC2	FOXQ1	0.401	1
ERCC2	PTEN	0.401	1
NF2	Del_4q34.2	0.401	1
Amp_19q12	Del_2q37.1	0.401	1
PLCXD3	10q-Del	0.402	1
PLCXD3	Del_15q13.1	0.402	1
SHANK1	Del_8p23.3	0.402	1
ERBB3	Del_Xp11.3	0.403	1
RB1	17p-Del	0.403	1
SPTAN1	Amp_11q13.3	0.403	1
SPTAN1	Del_10q23.31	0.403	1
19q-Amp	Del_Xp11.3	0.403	1
Amp_4q13.3	Del_Xp11.3	0.403	1
Amp_7p11.2	Del_10q23.31	0.403	1
ASXL2	11q-Del	0.404	1
ASXL2	5q-Del	0.404	1
ASXL2	Del_19p13.3	0.404	1
CREBBP	Amp_4p16.3	0.404	1
CTNNB1	1q-Amp	0.404	1
EP300	18q-Del	0.404	1
FBXW7	Amp_1q21.3	0.404	1
FOXA1	PTEN	0.404	1
FOXA1	THRAP3	0.404	1
FOXA1	1q-Amp	0.404	1
FOXQ1	THRAP3	0.404	1
FOXQ1	1q-Amp	0.404	1
PARD3	TP53	0.404	1
PTEN	Del_1p36.11	0.404	1
THRAP3	1q-Amp	0.404	1
THRAP3	Del_1p36.11	0.404	1
TP53	Del_12p13.1	0.404	1
11q-Del	Amp_17q12	0.404	1
Amp_3q26.33	Del_2q34	0.404	1
Amp_4p16.3	Del_6q27	0.404	1
CNOT1	8q-Amp	0.405	1
FAM47C	8q-Amp	0.405	1
PLCXD3	Del_9p23	0.405	1
RAI1	Del_18q23	0.405	1
RBM10	8q-Amp	0.405	1
Del_2q22.1	Del_13q14.2	0.405	1
ELF3	8q-Amp	0.406	1
ELF3	Del_18q23	0.406	1
MLL3	Del_16q23.1	0.406	1
RHOB	Del_9p21.3	0.406	1
7p-Amp	18q-Del	0.406	1
7p-Amp	Del_14q24.1	0.406	1
CSMD3	Amp_5p15.33	0.407	1
DNAH6	FGFR3	0.407	1
DNAH6	Del_16p13.3	0.407	1
FOXA1	Del_13q14.2	0.407	1
FOXQ1	Del_13q14.2	0.407	1
HRAS	STAG2	0.407	1
NRAS	Del_11p15.5	0.407	1
NUDT11	Del_11p15.5	0.407	1
PIK3CA	Amp_6p22.3	0.407	1
RUNX1	Amp_5p15.33	0.407	1
ASXL2	Amp_22q12.2	0.408	1
BCL2L1	Amp_19q12	0.408	1
HES1	RHOA	0.408	1
PKHD1	Amp_1p34.2	0.408	1
PKHD1	Amp_3p25.2	0.408	1
PSIP1	4p-Del	0.408	1
RPTN	Amp_1q23.3	0.408	1
7q-Amp	14q-Del	0.408	1
7q-Amp	4p-Del	0.408	1
Amp_1p34.2	Amp_16p13.2	0.408	1
Del_6q27	Del_9p21.3	0.408	1
ARID1A	8q-Amp	0.409	1
IDH1	PARD3	0.409	1
ZBTB7B	Amp_8p11.21	0.409	1
Amp_1q21.3	Amp_12q15	0.409	1
Amp_5p15.33	Del_18q23	0.409	1
Amp_6q21	Amp_8p11.21	0.409	1
CUL1	Del_4q34.2	0.41	1
METTL3	Del_4q34.2	0.41	1
RPTN	8q-Amp	0.41	1
RPTN	Del_18q23	0.41	1
7q-Amp	Amp_1q21.3	0.41	1
8q-Amp	Amp_4q13.3	0.41	1
8q-Amp	Del_7q36.3	0.41	1
4p-Del	Del_11q25	0.41	1
Amp_5p15.33	Del_13q14.2	0.41	1
Del_7q36.3	Del_18q23	0.41	1
ASXL2	FGFR3	0.411	1
ATM	PKHD1	0.411	1
CNNM4	PSIP1	0.411	1
CNNM4	7q-Amp	0.411	1
CNNM4	Del_10q23.31	0.411	1
CNOT1	MLL	0.411	1
CSMD3	Amp_17q12	0.411	1
ERBB3	PKHD1	0.411	1
FAM47C	Del_16q23.1	0.411	1
MLL2	RHOA	0.411	1
NF2	Del_10q23.31	0.411	1
PKHD1	Del_4q34.2	0.411	1
RBM10	Del_16q23.1	0.411	1
SF1	15q-Del	0.411	1
SF1	Amp_3q26.33	0.411	1
5p-Amp	Del_15q13.1	0.411	1
Amp_16p13.2	Del_4q34.2	0.411	1
Amp_19q12	Del_22q13.32	0.411	1
ATM	KIAA1267	0.412	1
ATM	Amp_11q22.2	0.412	1
CREBBP	5q-Del	0.412	1
CREBBP	Del_19p13.3	0.412	1
CUL1	Del_15q13.1	0.412	1
DNAH6	Amp_19q13.43	0.412	1
IDH1	8q-Amp	0.412	1
IDH1	Del_18q23	0.412	1
METTL3	3q-Amp	0.412	1
NFE2L2	Del_4q34.2	0.412	1
PLCXD3	TSC1	0.412	1
RBM10	Del_8p21.3	0.412	1
3p-Amp	6q-Del	0.412	1
ARID1A	Del_11p15.5	0.413	1
HES1	Amp_1q21.3	0.413	1
SCARF2	Amp_22q12.2	0.413	1
ZFP36L1	19p-Del	0.413	1
19p-Del	Amp_22q12.2	0.413	1
Amp_4p16.3	Amp_10p14	0.413	1
Amp_13q22.1	Del_11q25	0.413	1
Del_6p25.3	Del_11q25	0.413	1
CDKN2A	FAM47C	0.414	1
NRAS	Amp_3p25.2	0.414	1
PARD3	Amp_1q23.3	0.414	1
RAI1	RHOB	0.414	1
RBM10	RHOB	0.414	1
SPTAN1	Amp_1p34.2	0.414	1
UNC93B1	Amp_3p25.2	0.414	1
9p-Del	Amp_8p11.23	0.414	1
9p-Del	Del_16p13.3	0.414	1
FAT1	TSC1	0.415	1
FOXQ1	18q-Del	0.415	1
RUNX1	Del_22q13.32	0.415	1
SPTAN1	Amp_17q23.3	0.415	1
SPTAN1	Del_3p14.2	0.415	1
THRAP3	Del_14q24.1	0.415	1
TP53	Del_15q13.1	0.415	1
Amp_1q23.3	Amp_13q22.1	0.415	1
Amp_7p11.2	Amp_17q23.3	0.415	1
MLL2	Amp_5p15.33	0.416	1
RHOB	11q-Del	0.416	1
C3orf70	MBD1	0.417	1
C3orf70	Del_1q32.1	0.417	1
C3orf70	Del_Xq21.33	0.417	1
CUL1	17q-Amp	0.417	1
ERCC2	KIAA1267	0.417	1
ERCC2	22q-Del	0.417	1
GNA13	METTL3	0.417	1
MBD1	METTL3	0.417	1
METTL3	Del_1q32.1	0.417	1
METTL3	Del_Xq21.33	0.417	1
PARD3	ZFP36L1	0.417	1
PARD3	Amp_22q12.2	0.417	1
TP53	Amp_19q13.43	0.417	1
3p-Amp	Del_1q32.1	0.417	1
3p-Amp	Del_Xq21.33	0.417	1
Amp_22q12.2	Del_12p13.1	0.417	1
ASXL2	Amp_17q23.3	0.418	1
CSMD3	Amp_3p25.2	0.418	1
FAM47C	11p-Del	0.418	1
FOXA1	Del_5q12.1	0.418	1
FOXQ1	Del_5q12.1	0.418	1
HRAS	Amp_20q11.21	0.418	1
PSIP1	Del_13q14.2	0.418	1
PTEN	Del_5q12.1	0.418	1
RB1	Amp_1p34.2	0.418	1
Amp_8p11.23	Amp_12q15	0.418	1
Amp_8p11.23	Del_6p25.3	0.418	1
Amp_13q22.1	Del_16p13.3	0.418	1
FBXW7	HLA-A	0.419	1
HLA-A	Amp_1p34.2	0.419	1
KIAA1267	7p-Amp	0.419	1
KLF5	22q-Del	0.419	1
RXRA	4q-Del	0.419	1
UNC93B1	Amp_1p34.2	0.419	1
FAT1	ZBTB7B	0.42	1
MBD1	Del_11p15.5	0.42	1
20q-Amp	Amp_6q21	0.42	1
ELF3	TMCO4	0.421	1
GNA13	Del_3p14.2	0.421	1
RPTN	17p-Del	0.421	1
TP53	20p-Amp	0.421	1
11p-Del	Amp_4q13.3	0.421	1
17p-Del	Amp_4q13.3	0.421	1
ARID1B	CSMD3	0.422	1
ARID1B	Del_16p13.3	0.422	1
CSMD3	7p-Amp	0.422	1
CSMD3	4q-Del	0.422	1
FGFR3	KLF5	0.422	1
FGFR3	4q-Del	0.422	1
KLF5	STAG2	0.422	1
PLCXD3	Amp_19q13.43	0.422	1
4p-Del	Amp_19q13.43	0.422	1
Amp_13q22.1	Del_5q12.1	0.422	1
ARID1B	IDH1	0.423	1
C3orf70	Amp_11q13.3	0.423	1
C3orf70	Del_10q23.31	0.423	1
HRAS	RUNX1	0.423	1
METTL3	Del_10q23.31	0.423	1
MLL3	Amp_11q13.3	0.423	1
RPTN	Del_4q22.1	0.423	1
RUNX1	TXNIP	0.423	1
Amp_4q13.3	Del_4q22.1	0.423	1
Amp_10p14	Del_11p15.5	0.423	1
ATM	Del_18q23	0.424	1
ELF3	7q-Amp	0.424	1
ERBB2	TP53	0.424	1
ERCC2	Amp_19q13.43	0.424	1
PSIP1	Amp_17q23.3	0.424	1
PSIP1	Del_3p14.2	0.424	1
20q-Amp	Amp_8p11.23	0.424	1
7q-Amp	Del_3p14.2	0.424	1
15q-Del	Amp_17q23.3	0.424	1
9q-Del	Del_8p21.3	0.424	1
PIK3CA	19q-Amp	0.425	1
PKHD1	RHOA	0.425	1
RHOB	SCARF2	0.425	1
RHOB	19p-Del	0.425	1
SCARF2	Del_8p21.3	0.425	1
TP53	20q-Amp	0.425	1
CTNNB1	19q-Amp	0.426	1
EP300	Del_3p14.2	0.426	1
FAM47C	SPTAN1	0.426	1
FOXA1	Amp_4q13.3	0.426	1
FOXQ1	19q-Amp	0.426	1
FOXQ1	Del_7q36.3	0.426	1
MLL2	Del_2q22.1	0.426	1
PKHD1	8p-Del	0.426	1
PTEN	RPTN	0.426	1
PTEN	19q-Amp	0.426	1
PTEN	Amp_4q13.3	0.426	1
PTEN	Del_7q36.3	0.426	1
RPTN	1q-Amp	0.426	1
THRAP3	Amp_4q13.3	0.426	1
19q-Amp	Del_8p23.3	0.426	1
Amp_4q13.3	Del_8p23.3	0.426	1
ASXL2	Amp_17q12	0.427	1
CDKN1A	HRAS	0.427	1
CNNM4	CNOT1	0.427	1
CNNM4	FAM47C	0.427	1
CNNM4	RAI1	0.427	1
CNOT1	NF2	0.427	1
ELF3	Del_8p23.3	0.427	1
KIAA1267	Del_10q23.31	0.427	1
KRAS	Del_16q23.1	0.427	1
NF2	RAI1	0.427	1
NF2	RBM10	0.427	1
RUNX1	Del_6p25.3	0.427	1
16p-Del	Amp_11q13.3	0.427	1
Amp_3q26.33	Amp_11q22.2	0.427	1
Amp_17q23.3	Del_8p23.3	0.427	1
C3orf70	TSC1	0.428	1
ERCC2	Del_17p12	0.428	1
FBXW7	Del_15q13.1	0.429	1
KDM6A	PKHD1	0.429	1
RXRA	Del_9p21.3	0.429	1
TXNIP	Amp_6p22.3	0.429	1
Amp_11q13.3	Amp_16p13.2	0.429	1
HLA-A	NF1	0.43	1
MLL	Del_14q24.1	0.43	1
MLL3	Del_2q22.1	0.43	1
NF1	NRAS	0.43	1
NF1	NUDT11	0.43	1
NF1	UNC93B1	0.43	1
TMCO4	Amp_3p25.2	0.43	1
17q-Amp	Amp_3p25.2	0.43	1
7q-Amp	9q-Del	0.43	1
Amp_8p11.21	Del_2q37.1	0.43	1
Amp_10p14	Amp_22q12.2	0.43	1
CNNM4	FGFR3	0.431	1
CNNM4	STAG2	0.431	1
CNNM4	Del_16p13.3	0.431	1
CSMD3	NF2	0.431	1
FGFR3	SF1	0.431	1
SF1	Amp_8p11.23	0.431	1
Amp_6q21	Del_2q34	0.431	1
CDKN1A	PLCXD3	0.432	1
EP300	Del_5q12.1	0.432	1
KLF5	Del_2q37.1	0.432	1
MLL3	7p-Amp	0.432	1
MLL3	4q-Del	0.432	1
NF1	Del_16p13.3	0.432	1
PLCXD3	11q-Del	0.432	1
PLCXD3	5q-Del	0.432	1
STAG2	Del_13q14.2	0.432	1
20p-Amp	Amp_8p11.21	0.432	1
Amp_4p16.3	Amp_8p11.21	0.432	1
Del_11q23.3	Del_13q14.2	0.432	1
CNOT1	14q-Del	0.433	1
CREBBP	GNA13	0.433	1
CREBBP	MBD1	0.433	1
CREBBP	Del_1q32.1	0.433	1
MBD1	Del_11q25	0.433	1
MLL3	PIK3CA	0.433	1
RB1	19p-Del	0.433	1
RBM10	Amp_20q11.21	0.433	1
TMCO4	Amp_7p21.1	0.433	1
TMCO4	Del_6q27	0.433	1
17q-Amp	Amp_7p21.1	0.433	1
17q-Amp	Del_6q27	0.433	1
17q-Amp	Del_11q25	0.433	1
8q-Amp	Del_11q25	0.433	1
11p-Del	Amp_8q22.3	0.433	1
16p-Del	9p-Del	0.433	1
19p-Del	9p-Del	0.433	1
9p-Del	Amp_11q22.2	0.433	1
Amp_1q23.3	Del_6q27	0.433	1
KDM6A	11p-Del	0.434	1
ZNF185	20p-Amp	0.434	1
ERBB2	Amp_12q15	0.435	1
ERBB2	Del_6p25.3	0.435	1
HLA-A	Amp_20q11.21	0.435	1
KDM6A	PSIP1	0.435	1
KIAA1267	Del_14q24.1	0.435	1
PARD3	Del_8p23.3	0.435	1
16p-Del	Del_14q24.1	0.435	1
Amp_11q22.2	Del_14q24.1	0.435	1
CDKN2A	Del_17p12	0.436	1
MBD1	RHOA	0.436	1
NFE2L2	PIK3CA	0.436	1
PIK3CA	RXRA	0.436	1
RHOA	TMCO4	0.436	1
RHOA	17q-Amp	0.436	1
SHANK1	TMCO4	0.436	1
SHANK1	Del_Xq21.33	0.436	1
CREBBP	Amp_7p11.2	0.437	1
ERBB2	Del_2q34	0.437	1
ERCC2	RPTN	0.437	1
IDH1	RXRA	0.437	1
SPTAN1	Del_2q37.1	0.437	1
ZNF185	Del_8p23.3	0.437	1
5p-Amp	Del_2q34	0.437	1
Amp_7p11.2	Del_11q25	0.437	1
Amp_19q12	Del_2q34	0.437	1
ASXL2	CREBBP	0.438	1
CDKN2A	PARD3	0.438	1
CREBBP	7q-Amp	0.438	1
PSIP1	Del_6q27	0.438	1
Amp_17q12	Del_11q25	0.438	1
FGFR3	Del_4q22.1	0.439	1
GNA13	Amp_1q23.3	0.439	1
Amp_5p15.33	Del_4q34.2	0.439	1
ARID1B	ERBB3	0.44	1
CDKN1A	Amp_6p22.3	0.44	1
5q-Del	Amp_6p22.3	0.44	1
ARID1A	Amp_1q23.3	0.441	1
CDKN1A	Del_8p21.3	0.441	1
CTNNB1	ERBB3	0.441	1
EP300	Amp_5p15.33	0.441	1
ERBB3	PTEN	0.441	1
ERBB3	THRAP3	0.441	1
ERBB3	1q-Amp	0.441	1
KIAA1267	16p-Del	0.441	1
NRAS	Amp_16p13.2	0.441	1
PARD3	Amp_3p25.2	0.441	1
PIK3CA	TSC1	0.441	1
PKHD1	UNC93B1	0.441	1
PLCXD3	Amp_17q12	0.441	1
RXRA	16p-Del	0.441	1
RXRA	22q-Del	0.441	1
UNC93B1	Amp_16p13.2	0.441	1
17p-Del	Amp_5p15.33	0.441	1
ASXL2	HRAS	0.442	1
ASXL2	TXNIP	0.442	1
BCL2L1	Del_4q34.2	0.442	1
DNAH6	Amp_17q12	0.442	1
ERBB3	8q-Amp	0.442	1
ERBB3	Del_9p23	0.442	1
HES1	PSIP1	0.442	1
HLA-A	Amp_6p22.3	0.442	1
PARD3	Amp_13q22.1	0.442	1
PARD3	Del_16q23.1	0.442	1
PARD3	Del_18q23	0.442	1
PKHD1	Amp_10p14	0.442	1
PLCXD3	Del_17p12	0.442	1
RHOA	10q-Del	0.442	1
SHANK1	10q-Del	0.442	1
SHANK1	6q-Del	0.442	1
TXNIP	Amp_17q12	0.442	1
UNC93B1	Amp_6p22.3	0.442	1
ZBTB7B	7q-Amp	0.442	1
ZNF185	Amp_12q15	0.442	1
C3orf70	KRAS	0.443	1
C3orf70	RUNX1	0.443	1
C3orf70	Del_Xp11.3	0.443	1
CNNM4	PARD3	0.443	1
CUL1	KRAS	0.443	1
KRAS	3p-Amp	0.443	1
METTL3	Del_Xp11.3	0.443	1
NF2	PARD3	0.443	1
PSIP1	8p-Del	0.443	1
PTEN	Del_17p12	0.443	1
RUNX1	3p-Amp	0.443	1
SF1	Del_12p13.1	0.443	1
THRAP3	Del_17p12	0.443	1
TSC1	5p-Amp	0.443	1
3q-Amp	Del_5q12.1	0.443	1
9q-Del	Del_15q13.1	0.443	1
Amp_1q23.3	Del_9p21.3	0.443	1
ASXL2	Del_8p23.3	0.444	1
C3orf70	Amp_19q13.43	0.444	1
ERBB2	MBD1	0.444	1
ERBB2	Del_1q32.1	0.444	1
ERBB2	Del_Xq21.33	0.444	1
MBD1	Amp_19q12	0.444	1
METTL3	Amp_19q13.43	0.444	1
PIK3CA	Del_8p21.3	0.444	1
5p-Amp	14q-Del	0.444	1
5p-Amp	4p-Del	0.444	1
5p-Amp	Amp_4q13.3	0.444	1
Amp_7p11.2	Del_16p13.3	0.444	1
Amp_19q12	Del_1q32.1	0.444	1
Amp_19q12	Del_Xq21.33	0.444	1
FAM47C	5p-Amp	0.445	1
FBXW7	PSIP1	0.445	1
RBM10	Amp_6p22.3	0.445	1
RPTN	Del_9p23	0.445	1
18q-Del	Amp_19q13.43	0.445	1
6q-Del	Amp_3p25.2	0.445	1
Amp_12q15	Del_9p21.3	0.445	1
MLL	Del_8p23.3	0.446	1
20q-Amp	Amp_4p16.3	0.446	1
Amp_3p25.2	Del_6q27	0.446	1
Amp_3p25.2	Del_11q25	0.446	1
Amp_10p14	Amp_11q13.3	0.446	1
IDH1	Del_13q14.2	0.447	1
C3orf70	CSMD3	0.448	1
C3orf70	Del_16p13.3	0.448	1
CTNNB1	TXNIP	0.448	1
CUL1	Amp_8p11.23	0.448	1
DNAH6	FOXQ1	0.448	1
DNAH6	THRAP3	0.448	1
ERCC2	Del_19p13.3	0.448	1
FOXQ1	HRAS	0.448	1
HRAS	THRAP3	0.448	1
MLL3	Del_Xp11.3	0.448	1
PIK3CA	ZBTB7B	0.448	1
PTEN	TXNIP	0.448	1
RUNX1	Del_2q37.1	0.448	1
8q-Amp	Del_10q23.31	0.448	1
Amp_17q12	Del_9p21.3	0.448	1
ASXL2	Del_4q22.1	0.449	1
BCL2L1	Amp_3q26.33	0.449	1
NRAS	Amp_1q21.3	0.449	1
UNC93B1	Amp_1q21.3	0.449	1
ZNF185	Amp_7p11.2	0.45	1
Amp_1p34.2	Del_3p14.2	0.45	1
Amp_1q23.3	Del_2q34	0.45	1
Amp_12q15	Amp_16p13.2	0.45	1
Amp_13q22.1	Amp_16p13.2	0.45	1
IDH1	Amp_22q12.2	0.451	1
KDM6A	Del_10q23.31	0.451	1
PLCXD3	Del_4q22.1	0.451	1
19q-Amp	Del_14q24.1	0.451	1
5p-Amp	Del_11p15.5	0.451	1
Amp_4q13.3	Del_14q24.1	0.451	1
Amp_8p11.21	Del_19p13.3	0.451	1
HLA-A	10q-Del	0.452	1
HLA-A	6q-Del	0.452	1
NF1	3q-Amp	0.452	1
NF1	6q-Del	0.452	1
NRAS	3q-Amp	0.452	1
NUDT11	6q-Del	0.452	1
RHOB	8p-Del	0.452	1
UNC93B1	3q-Amp	0.452	1
UNC93B1	10q-Del	0.452	1
Amp_6q21	Del_4q34.2	0.452	1
CTNNB1	Amp_8q22.3	0.453	1
EP300	Del_6q27	0.453	1
ERBB2	PSIP1	0.453	1
ERBB2	7q-Amp	0.453	1
FBXW7	MLL2	0.453	1
FOXA1	Amp_8q22.3	0.453	1
PSIP1	Amp_19q12	0.453	1
19q-Amp	Del_8p21.3	0.453	1
1q-Amp	Amp_8q22.3	0.453	1
20p-Amp	Del_11q23.3	0.453	1
7q-Amp	Amp_19q12	0.453	1
8q-Amp	5q-Del	0.453	1
FOXA1	20p-Amp	0.454	1
FOXQ1	20p-Amp	0.454	1
TMCO4	Amp_4p16.3	0.454	1
20p-Amp	Del_1p36.11	0.454	1
Amp_1q23.3	Amp_7p11.2	0.454	1
Del_1p36.11	Del_22q13.32	0.454	1
CDKN1A	Amp_1q21.3	0.455	1
CSMD3	Del_5q12.1	0.455	1
ERBB3	9p-Del	0.455	1
FGFR3	Del_5q12.1	0.455	1
MBD1	Del_2q22.1	0.455	1
STAG2	Del_5q12.1	0.455	1
Del_1q32.1	Del_2q22.1	0.455	1
Del_7q36.3	Del_9p21.3	0.455	1
ATM	Del_11p15.5	0.456	1
EP300	PARD3	0.456	1
PIK3CA	PSIP1	0.456	1
PIK3CA	15q-Del	0.456	1
18q-Del	Amp_11q13.3	0.456	1
Amp_13q22.1	Del_2q22.1	0.456	1
CSMD3	NFE2L2	0.457	1
ELF3	RBM10	0.457	1
FAM47C	Amp_1q21.3	0.457	1
FGFR3	NFE2L2	0.457	1
KLF5	20p-Amp	0.457	1
KLF5	Del_22q13.32	0.457	1
MLL3	19p-Del	0.457	1
NFE2L2	STAG2	0.457	1
RHOB	Amp_6p22.3	0.457	1
RXRA	Del_16p13.3	0.457	1
SCARF2	Del_2q37.1	0.457	1
STAG2	Amp_11q22.2	0.457	1
20p-Amp	4q-Del	0.457	1
22q-Del	Amp_8p11.23	0.457	1
ARID1B	CNNM4	0.458	1
ARID1B	NF2	0.458	1
ARID1B	SF1	0.458	1
CNNM4	KLF5	0.458	1
NF2	7p-Amp	0.458	1
NF2	4q-Del	0.458	1
PARD3	4p-Del	0.458	1
PARD3	Amp_7p11.2	0.458	1
SPTAN1	Del_12p13.1	0.458	1
3q-Amp	Del_10q23.31	0.458	1
C3orf70	CDKN1A	0.459	1
CDKN1A	CUL1	0.459	1
CDKN1A	METTL3	0.459	1
FAM47C	HES1	0.459	1
FAM47C	ZBTB7B	0.459	1
FAM47C	Amp_6q21	0.459	1
HES1	RAI1	0.459	1
KDM6A	RUNX1	0.459	1
METTL3	11q-Del	0.459	1
METTL3	5q-Del	0.459	1
MLL3	Del_11q23.3	0.459	1
RBM10	ZBTB7B	0.459	1
SPTAN1	Amp_19q12	0.459	1
ASXL2	Amp_20q11.21	0.46	1
ERCC2	PLCXD3	0.46	1
FAT1	4p-Del	0.46	1
Del_11p15.5	Del_16q23.1	0.46	1
ARID1B	CDKN2A	0.461	1
ASXL2	14q-Del	0.461	1
CDKN2A	KLF5	0.461	1
CDKN2A	7p-Amp	0.461	1
ELF3	Amp_17q23.3	0.461	1
FAT1	20q-Amp	0.461	1
KDM6A	MLL	0.461	1
KDM6A	Del_6p25.3	0.461	1
KLF5	RHOB	0.461	1
NFE2L2	Del_9p23	0.461	1
14q-Del	Amp_17q12	0.461	1
4p-Del	Amp_17q12	0.461	1
Amp_11q22.2	Del_9p23	0.461	1
Amp_19q12	Del_9p21.3	0.461	1
BCL2L1	CSMD3	0.462	1
BCL2L1	Amp_8p11.23	0.462	1
FBXW7	SCARF2	0.462	1
MLL2	Amp_13q22.1	0.462	1
MLL3	Amp_1p34.2	0.462	1
NRAS	TSC1	0.462	1
RHOA	Amp_3q26.33	0.462	1
Amp_3q26.33	Amp_6q21	0.462	1
Amp_19q13.43	Del_2q34	0.462	1
CSMD3	Amp_16p13.2	0.463	1
KIAA1267	ZFP36L1	0.463	1
KIAA1267	Amp_22q12.2	0.463	1
RUNX1	SHANK1	0.463	1
SHANK1	Del_Xp11.3	0.463	1
18q-Del	Amp_22q12.2	0.463	1
CREBBP	Del_4q22.1	0.464	1
ELF3	KRAS	0.464	1
ELF3	Del_Xp11.3	0.464	1
GNA13	MLL2	0.464	1
IDH1	RHOB	0.464	1
MLL3	Del_8p21.3	0.464	1
RUNX1	Del_3p14.2	0.464	1
ZBTB7B	Amp_8q22.3	0.464	1
20q-Amp	Amp_6p22.3	0.464	1
Del_3p14.2	Del_Xp11.3	0.464	1
EP300	TXNIP	0.466	1
GNA13	Amp_6p22.3	0.466	1
RPTN	9q-Del	0.466	1
TXNIP	11p-Del	0.466	1
ZNF185	Del_3p14.2	0.466	1
19q-Amp	Del_5q12.1	0.466	1
9q-Del	Amp_4q13.3	0.466	1
9q-Del	Del_7q36.3	0.466	1
Amp_11q13.3	Del_8p23.3	0.466	1
CTNNB1	MLL	0.467	1
CTNNB1	Amp_12q15	0.467	1
CTNNB1	Del_6p25.3	0.467	1
FAT1	MBD1	0.467	1
FAT1	17q-Amp	0.467	1
FOXA1	MLL	0.467	1
FOXA1	Amp_13q22.1	0.467	1
FOXA1	Del_6p25.3	0.467	1
FOXQ1	MLL	0.467	1
FOXQ1	Amp_13q22.1	0.467	1
MBD1	20q-Amp	0.467	1
MLL	PTEN	0.467	1
MLL	1q-Amp	0.467	1
PTEN	Amp_13q22.1	0.467	1
THRAP3	Amp_13q22.1	0.467	1
17q-Amp	20q-Amp	0.467	1
7p-Amp	Amp_1q23.3	0.467	1
7q-Amp	Amp_8p11.21	0.467	1
15q-Del	Amp_8p11.21	0.467	1
Del_1p36.11	Del_6p25.3	0.467	1
C3orf70	FOXQ1	0.468	1
C3orf70	THRAP3	0.468	1
C3orf70	1q-Amp	0.468	1
CREBBP	FBXW7	0.468	1
CREBBP	Amp_1p34.2	0.468	1
CTNNB1	METTL3	0.468	1
CUL1	FOXQ1	0.468	1
CUL1	Del_1p36.11	0.468	1
FBXW7	Del_11q25	0.468	1
FOXA1	3p-Amp	0.468	1
FOXQ1	3p-Amp	0.468	1
MLL2	Del_13q14.2	0.468	1
NF2	Amp_5p15.33	0.468	1
3p-Amp	Del_1p36.11	0.468	1
CNNM4	8q-Amp	0.469	1
ERBB3	KIAA1267	0.469	1
ERBB3	16p-Del	0.469	1
PLCXD3	18q-Del	0.469	1
RB1	Amp_7p21.1	0.469	1
SF1	8q-Amp	0.469	1
SF1	Del_18q23	0.469	1
Amp_7p11.2	Amp_16p13.2	0.469	1
EP300	Del_2q37.1	0.47	1
FAT1	5q-Del	0.47	1
KDM6A	Del_6q27	0.47	1
METTL3	Amp_20q11.21	0.47	1
RB1	1q-Amp	0.47	1
THRAP3	9p-Del	0.47	1
TSC1	Del_4q34.2	0.47	1
20p-Amp	Del_18q23	0.47	1
8q-Amp	Del_9p21.3	0.47	1
5q-Del	Del_11q23.3	0.47	1
Amp_19q13.43	Del_9p21.3	0.47	1
ARID1A	THRAP3	0.471	1
ARID1A	Del_1p36.11	0.471	1
CDKN1A	17p-Del	0.471	1
CDKN2A	Amp_1q21.3	0.471	1
CNOT1	FBXW7	0.471	1
DNAH6	RPTN	0.471	1
DNAH6	19q-Amp	0.471	1
EP300	Del_19p13.3	0.471	1
ERBB2	Amp_1q23.3	0.471	1
FOXQ1	Amp_5p15.33	0.471	1
GNA13	PSIP1	0.471	1
GNA13	15q-Del	0.471	1
HRAS	Amp_4q13.3	0.471	1
MBD1	PSIP1	0.471	1
PSIP1	17q-Amp	0.471	1
PSIP1	Del_Xq21.33	0.471	1
RAI1	9q-Del	0.471	1
RBM10	9q-Del	0.471	1
RBM10	Del_5q12.1	0.471	1
TMCO4	7q-Amp	0.471	1
TXNIP	Amp_4q13.3	0.471	1
TXNIP	Del_7q36.3	0.471	1
17q-Amp	7q-Amp	0.471	1
17q-Amp	15q-Del	0.471	1
3q-Amp	Amp_4p16.3	0.471	1
7p-Amp	Del_11p15.5	0.471	1
7q-Amp	Del_1q32.1	0.471	1
9p-Del	Amp_17q12	0.471	1
ARID1A	SHANK1	0.472	1
CNOT1	Del_11q25	0.472	1
ERCC2	TXNIP	0.472	1
FAM47C	Amp_7p21.1	0.472	1
KIAA1267	SF1	0.472	1
MLL2	Amp_4p16.3	0.472	1
NF2	NFE2L2	0.472	1
NF2	22q-Del	0.472	1
RAI1	Amp_7p21.1	0.472	1
RB1	ZFP36L1	0.472	1
RB1	Amp_22q12.2	0.472	1
RBM10	Amp_7p21.1	0.472	1
9p-Del	Amp_22q12.2	0.472	1
ARID1A	PARD3	0.473	1
ARID1B	MLL	0.473	1
ARID1B	Del_16q23.1	0.473	1
KDM6A	6q-Del	0.473	1
KLF5	Amp_12q15	0.473	1
MLL	7p-Amp	0.473	1
MLL	4q-Del	0.473	1
NUDT11	Amp_19q13.43	0.473	1
5p-Amp	Amp_3p25.2	0.473	1
7p-Amp	Amp_12q15	0.473	1
7p-Amp	Del_16q23.1	0.473	1
CREBBP	ZNF185	0.474	1
NF1	SCARF2	0.474	1
NF1	Amp_5p15.33	0.474	1
RHOA	Del_11p15.5	0.474	1
ZNF185	Amp_7p21.1	0.474	1
ZNF185	Del_6q27	0.474	1
ZNF185	Del_11q25	0.474	1
20p-Amp	Del_2q34	0.474	1
5p-Amp	Amp_19q13.43	0.474	1
14q-Del	Amp_8q22.3	0.474	1
CUL1	Amp_17q12	0.475	1
HES1	Del_12p13.1	0.475	1
METTL3	Amp_17q12	0.475	1
PKHD1	3q-Amp	0.475	1
PKHD1	Del_15q13.1	0.475	1
PKHD1	Del_17p12	0.475	1
Amp_3q26.33	Amp_11q13.3	0.475	1
ELF3	Del_8p21.3	0.476	1
MLL	3q-Amp	0.476	1
3q-Amp	Amp_13q22.1	0.476	1
Amp_10p14	Del_15q13.1	0.476	1
Amp_12q15	Del_15q13.1	0.476	1
Del_6p25.3	Del_15q13.1	0.476	1
ERBB3	MLL	0.477	1
HLA-A	PIK3CA	0.477	1
MLL	Amp_8q22.3	0.477	1
RUNX1	Del_11p15.5	0.477	1
SCARF2	Amp_8q22.3	0.477	1
19q-Amp	8p-Del	0.477	1
Del_11p15.5	Del_Xp11.3	0.477	1
ASXL2	Del_2q22.1	0.478	1
ELF3	NF1	0.478	1
ERBB3	19q-Amp	0.478	1
ERBB3	Amp_4q13.3	0.478	1
FAT1	Del_6p25.3	0.478	1
GNA13	Del_2q34	0.478	1
MLL3	Amp_8p11.23	0.478	1
17q-Amp	Del_2q34	0.478	1
20q-Amp	Amp_13q22.1	0.478	1
Del_2q34	Del_Xq21.33	0.478	1
CREBBP	Del_10q23.31	0.479	1
FBXW7	Del_8p21.3	0.479	1
MLL2	TSC1	0.479	1
7q-Amp	Del_9p23	0.479	1
15q-Del	Del_9p23	0.479	1
Amp_1p34.2	Del_8p21.3	0.479	1
Amp_3q26.33	Amp_7p21.1	0.479	1
CSMD3	Amp_20q11.21	0.48	1
EP300	Amp_19q12	0.48	1
FOXA1	Amp_7p11.2	0.48	1
KLF5	Del_18q23	0.48	1
PIK3CA	ZFP36L1	0.48	1
PTEN	Amp_7p11.2	0.48	1
SPTAN1	1q-Amp	0.48	1
THRAP3	Amp_7p11.2	0.48	1
17q-Amp	Del_8p21.3	0.48	1
19p-Del	Del_11p15.5	0.48	1
Del_8p21.3	Del_Xq21.33	0.48	1
EP300	FBXW7	0.481	1
KRAS	Amp_4p16.3	0.481	1
PSIP1	Amp_16p13.2	0.481	1
SPTAN1	Del_2q22.1	0.481	1
11p-Del	Amp_1p34.2	0.481	1
CSMD3	ZBTB7B	0.482	1
FGFR3	HES1	0.482	1
RB1	Del_4q34.2	0.482	1
STAG2	ZBTB7B	0.482	1
STAG2	Amp_6q21	0.482	1
7p-Amp	14q-Del	0.482	1
7p-Amp	4p-Del	0.482	1
Amp_6q21	Del_16p13.3	0.482	1
CDKN1A	NRAS	0.483	1
CDKN1A	NUDT11	0.483	1
HLA-A	11q-Del	0.483	1
HLA-A	5q-Del	0.483	1
MLL2	Del_6q27	0.483	1
NUDT11	5q-Del	0.483	1
UNC93B1	11q-Del	0.483	1
Amp_17q12	Del_18q23	0.483	1
ELF3	Del_11q25	0.484	1
ERBB2	Del_4q22.1	0.484	1
MLL2	Amp_11q13.3	0.484	1
PARD3	5p-Amp	0.484	1
22q-Del	Amp_8q22.3	0.484	1
Amp_19q12	Del_4q22.1	0.484	1
CDKN2A	22q-Del	0.485	1
CDKN2A	Amp_11q22.2	0.485	1
NFE2L2	RHOB	0.485	1
RHOB	22q-Del	0.485	1
9p-Del	Del_22q13.32	0.485	1
ASXL2	Del_8p21.3	0.486	1
DNAH6	Del_14q24.1	0.486	1
NFE2L2	Del_22q13.32	0.486	1
PKHD1	SCARF2	0.486	1
PKHD1	19p-Del	0.486	1
RXRA	Del_22q13.32	0.486	1
TXNIP	18q-Del	0.486	1
TXNIP	Del_14q24.1	0.486	1
20p-Amp	Amp_11q22.2	0.486	1
19p-Del	Amp_16p13.2	0.486	1
Amp_11q22.2	Del_22q13.32	0.486	1
ARID1B	Del_17p12	0.487	1
BCL2L1	8q-Amp	0.487	1
BCL2L1	Del_18q23	0.487	1
CNNM4	Amp_22q12.2	0.487	1
CNOT1	ERBB2	0.487	1
CNOT1	Amp_19q12	0.487	1
ERBB3	PLCXD3	0.487	1
RAI1	Amp_19q12	0.487	1
TP53	5q-Del	0.487	1
TP53	Del_14q24.1	0.487	1
8q-Amp	Del_9p23	0.487	1
Amp_4p16.3	Del_4q34.2	0.487	1
CSMD3	RHOA	0.488	1
CSMD3	SHANK1	0.488	1
CTNNB1	RHOA	0.488	1
ERBB2	KRAS	0.488	1
FOXA1	SHANK1	0.488	1
FOXQ1	RHOA	0.488	1
FOXQ1	SHANK1	0.488	1
KRAS	Amp_19q12	0.488	1
KRAS	Del_9p21.3	0.488	1
RHOA	THRAP3	0.488	1
RHOA	Amp_8p11.23	0.488	1
SCARF2	Amp_3p25.2	0.488	1
SHANK1	Del_16p13.3	0.488	1
Amp_4q13.3	Amp_10p14	0.488	1
ARID1B	Amp_7p11.2	0.489	1
ATM	ERBB3	0.489	1
CNOT1	GNA13	0.489	1
CNOT1	KDM6A	0.489	1
CNOT1	MBD1	0.489	1
CNOT1	17q-Amp	0.489	1
CNOT1	Del_1q32.1	0.489	1
CNOT1	Del_Xq21.33	0.489	1
FAM47C	GNA13	0.489	1
FAM47C	KDM6A	0.489	1
FAM47C	MBD1	0.489	1
FAM47C	TMCO4	0.489	1
GNA13	RAI1	0.489	1
KDM6A	RBM10	0.489	1
KLF5	SPTAN1	0.489	1
NF1	Del_8p23.3	0.489	1
PKHD1	RB1	0.489	1
RBM10	Del_Xq21.33	0.489	1
SPTAN1	4q-Del	0.489	1
TP53	ZFP36L1	0.489	1
5p-Amp	Del_4q34.2	0.489	1
4q-Del	Amp_7p11.2	0.489	1
ARID1B	ZBTB7B	0.49	1
ARID1B	Del_8p23.3	0.49	1
C3orf70	Del_4q22.1	0.49	1
EP300	20p-Amp	0.49	1
EP300	Del_22q13.32	0.49	1
NF1	RBM10	0.49	1
ZBTB7B	7p-Amp	0.49	1
7p-Amp	Amp_6q21	0.49	1
4q-Del	Amp_6q21	0.49	1
C3orf70	Amp_1q21.3	0.491	1
CDKN1A	FBXW7	0.491	1
HLA-A	Del_9p23	0.491	1
NRAS	Del_9p23	0.491	1
RHOA	5q-Del	0.491	1
RHOA	Del_19p13.3	0.491	1
SHANK1	Del_19p13.3	0.491	1
STAG2	ZFP36L1	0.491	1
TP53	3p-Amp	0.491	1
ZFP36L1	Amp_8p11.23	0.491	1
3p-Amp	Amp_1q21.3	0.491	1
Amp_6p22.3	Del_12p13.1	0.491	1
Amp_8p11.23	Amp_22q12.2	0.491	1
Amp_19q13.43	Del_13q14.2	0.491	1
C3orf70	19q-Amp	0.492	1
C3orf70	Del_7q36.3	0.492	1
ERBB2	Del_17p12	0.492	1
METTL3	RPTN	0.492	1
RPTN	TP53	0.492	1
RPTN	Del_22q13.32	0.492	1
19q-Amp	3p-Amp	0.492	1
19q-Amp	Del_22q13.32	0.492	1
20p-Amp	Amp_4q13.3	0.492	1
3p-Amp	Del_7q36.3	0.492	1
6q-Del	Del_9p21.3	0.492	1
Del_7q36.3	Del_22q13.32	0.492	1
ARID1A	Del_8p23.3	0.493	1
ASXL2	HLA-A	0.493	1
ASXL2	NRAS	0.493	1
ASXL2	UNC93B1	0.493	1
ASXL2	Del_14q24.1	0.493	1
CSMD3	3q-Amp	0.493	1
DNAH6	TXNIP	0.493	1
HLA-A	Amp_17q12	0.493	1
MLL	Del_8p21.3	0.493	1
NRAS	Amp_17q12	0.493	1
PSIP1	RB1	0.493	1
RB1	15q-Del	0.493	1
UNC93B1	Amp_17q12	0.493	1
Amp_17q12	Del_14q24.1	0.493	1
ELF3	Del_14q24.1	0.494	1
ERBB2	PIK3CA	0.494	1
NUDT11	TP53	0.494	1
RHOB	Del_10q23.31	0.494	1
18q-Del	Amp_17q23.3	0.494	1
FGFR3	Del_14q24.1	0.495	1
SPTAN1	10q-Del	0.495	1
SPTAN1	6q-Del	0.495	1
TP53	ZNF185	0.495	1
ZNF185	Amp_8q22.3	0.495	1
6q-Del	Amp_7p11.2	0.495	1
Amp_8p11.23	Del_14q24.1	0.495	1
FAT1	ZNF185	0.496	1
PSIP1	Del_2q34	0.496	1
RAI1	Amp_8q22.3	0.496	1
ZNF185	20q-Amp	0.496	1
ZNF185	Del_11q23.3	0.496	1
Amp_17q23.3	Del_16p13.3	0.496	1
CUL1	8q-Amp	0.497	1
CUL1	Del_18q23	0.497	1
FGFR3	Del_4q34.2	0.497	1
NF2	5p-Amp	0.497	1
SCARF2	3q-Amp	0.497	1
SF1	5p-Amp	0.497	1
SPTAN1	Del_17p12	0.497	1
20q-Amp	Amp_17q12	0.497	1
3q-Amp	10q-Del	0.497	1
3q-Amp	19p-Del	0.497	1
19p-Del	Del_15q13.1	0.497	1
Amp_17q12	Del_11q23.3	0.497	1
Del_12p13.1	Del_13q14.2	0.497	1
CSMD3	Del_18q23	0.498	1
ELF3	Del_2q37.1	0.498	1
ERBB3	ZFP36L1	0.498	1
MLL	Del_18q23	0.498	1
RB1	Amp_19q12	0.498	1
7q-Amp	Amp_1q23.3	0.498	1
Amp_13q22.1	Del_18q23	0.498	1
ERCC2	14q-Del	0.499	1
KRAS	15q-Del	0.499	1
KRAS	Del_2q22.1	0.499	1
MBD1	Del_4q34.2	0.499	1
PSIP1	10q-Del	0.499	1
PSIP1	Del_Xp11.3	0.499	1
17q-Amp	Del_4q34.2	0.499	1
3q-Amp	7q-Amp	0.499	1
3q-Amp	15q-Del	0.499	1
7q-Amp	6q-Del	0.499	1
7q-Amp	Del_15q13.1	0.499	1
Amp_12q15	Del_2q34	0.499	1
Amp_19q13.43	Del_4q34.2	0.499	1
20p-Amp	Del_16q23.1	0.5	1
ASXL2	17p-Del	0.501	1
CSMD3	Del_9p23	0.501	1
CTNNB1	MLL3	0.501	1
DNAH6	MLL2	0.501	1
EP300	Amp_17q12	0.501	1
FOXQ1	Del_2q37.1	0.501	1
MLL2	TXNIP	0.501	1
MLL3	THRAP3	0.501	1
NF2	RHOB	0.501	1
RHOB	SF1	0.501	1
1q-Amp	Del_2q37.1	0.501	1
STAG2	Amp_1q23.3	0.502	1
HLA-A	Del_4q22.1	0.503	1
KIAA1267	MLL	0.503	1
KIAA1267	Amp_12q15	0.503	1
NUDT11	Del_4q22.1	0.503	1
RPTN	Del_17p12	0.503	1
SPTAN1	Del_11q23.3	0.503	1
16p-Del	Amp_12q15	0.503	1
16p-Del	Amp_13q22.1	0.503	1
Amp_11q22.2	Amp_12q15	0.503	1
MLL	PLCXD3	0.504	1
MLL3	Del_2q37.1	0.504	1
PIK3CA	RAI1	0.504	1
PLCXD3	Amp_13q22.1	0.504	1
PLCXD3	Del_6p25.3	0.504	1
ZNF185	Del_2q34	0.504	1
Amp_4p16.3	Amp_19q13.43	0.504	1
C3orf70	ERCC2	0.505	1
ELF3	FOXQ1	0.505	1
ELF3	THRAP3	0.505	1
EP300	Amp_6p22.3	0.505	1
GNA13	PARD3	0.505	1
MLL	RPTN	0.505	1
MLL	19q-Amp	0.505	1
MLL	Amp_4q13.3	0.505	1
MLL	Del_7q36.3	0.505	1
PARD3	17q-Amp	0.505	1
PARD3	Del_11q25	0.505	1
PARD3	Del_Xq21.33	0.505	1
PTEN	Amp_17q23.3	0.505	1
RPTN	Amp_12q15	0.505	1
RPTN	Del_6p25.3	0.505	1
RXRA	4p-Del	0.505	1
THRAP3	Del_3p14.2	0.505	1
TMCO4	Del_12p13.1	0.505	1
19q-Amp	Del_6p25.3	0.505	1
19q-Amp	Del_16q23.1	0.505	1
14q-Del	Amp_11q22.2	0.505	1
Amp_3p25.2	Amp_11q13.3	0.505	1
Amp_4q13.3	Amp_12q15	0.505	1
Amp_4q13.3	Del_6p25.3	0.505	1
Amp_7p21.1	Del_12p13.1	0.505	1
Del_12p13.1	Del_Xq21.33	0.505	1
ASXL2	RHOA	0.506	1
CSMD3	Del_9p21.3	0.506	1
ERBB2	Del_3p14.2	0.506	1
HES1	NFE2L2	0.506	1
HES1	16p-Del	0.506	1
NFE2L2	ZBTB7B	0.506	1
RXRA	ZBTB7B	0.506	1
SF1	Del_13q14.2	0.506	1
ZBTB7B	Amp_11q22.2	0.506	1
5p-Amp	11q-Del	0.506	1
17p-Del	Amp_8p11.21	0.506	1
Amp_1p34.2	Del_11p15.5	0.506	1
CDKN2A	Amp_22q12.2	0.507	1
ELF3	Amp_1q21.3	0.507	1
PTEN	Amp_4p16.3	0.507	1
Amp_4p16.3	Del_1p36.11	0.507	1
Amp_17q23.3	Del_5q12.1	0.507	1
PIK3CA	Del_17p12	0.508	1
PKHD1	RAI1	0.508	1
SCARF2	TSC1	0.508	1
TSC1	19p-Del	0.508	1
9q-Del	Amp_19q13.43	0.508	1
ARID1A	Del_11q25	0.509	1
EP300	METTL3	0.509	1
PKHD1	Amp_1q23.3	0.509	1
3p-Amp	17p-Del	0.509	1
ERBB3	Amp_3q26.33	0.51	1
GNA13	Amp_3q26.33	0.51	1
GNA13	Del_10q23.31	0.51	1
MBD1	Del_10q23.31	0.51	1
RB1	RHOB	0.51	1
17q-Amp	Amp_11q13.3	0.51	1
17q-Amp	Del_10q23.31	0.51	1
19p-Del	Amp_20q11.21	0.51	1
Amp_11q13.3	Del_1q32.1	0.51	1
Del_1q32.1	Del_10q23.31	0.51	1
ARID1A	Del_16q23.1	0.511	1
ASXL2	FBXW7	0.511	1
FAT1	RUNX1	0.511	1
FAT1	Del_18q23	0.511	1
PIK3CA	Del_1q32.1	0.511	1
RUNX1	Del_11q23.3	0.511	1
20q-Amp	Del_Xp11.3	0.511	1
Del_11q23.3	Del_Xp11.3	0.511	1
DNAH6	9q-Del	0.512	1
RHOA	19q-Amp	0.512	1
RHOA	Amp_4q13.3	0.512	1
PLCXD3	Amp_7p11.2	0.513	1
Amp_11q22.2	Del_11p15.5	0.513	1
CNNM4	14q-Del	0.514	1
EP300	NF1	0.514	1
ERBB3	HRAS	0.514	1
MLL3	Del_8p23.3	0.514	1
NF2	4p-Del	0.514	1
ARID1A	11q-Del	0.515	1
CDKN1A	Amp_5p15.33	0.515	1
CNNM4	Del_5q12.1	0.515	1
CREBBP	Del_14q24.1	0.515	1
CUL1	TXNIP	0.515	1
HRAS	METTL3	0.515	1
HRAS	3p-Amp	0.515	1
METTL3	TXNIP	0.515	1
TXNIP	3p-Amp	0.515	1
Amp_20q11.21	Del_Xp11.3	0.515	1
KIAA1267	8q-Amp	0.516	1
NF1	PARD3	0.516	1
ZFP36L1	20p-Amp	0.516	1
9p-Del	Amp_13q22.1	0.516	1
CDKN1A	PIK3CA	0.517	1
CREBBP	CTNNB1	0.517	1
CREBBP	FOXA1	0.517	1
CTNNB1	Del_11q25	0.517	1
FAM47C	FAT1	0.517	1
FAM47C	20q-Amp	0.517	1
FAT1	RAI1	0.517	1
FAT1	RBM10	0.517	1
FOXA1	Amp_7p21.1	0.517	1
FOXQ1	Amp_7p21.1	0.517	1
KDM6A	TSC1	0.517	1
RAI1	RUNX1	0.517	1
RAI1	Del_Xp11.3	0.517	1
RBM10	Del_Xp11.3	0.517	1
1q-Amp	Amp_7p21.1	0.517	1
Amp_7p21.1	Del_1p36.11	0.517	1
ATM	ZNF185	0.518	1
EP300	MLL	0.518	1
EP300	Amp_12q15	0.518	1
ERBB3	Del_13q14.2	0.518	1
MLL2	Del_8p23.3	0.518	1
PIK3CA	Amp_10p14	0.518	1
PKHD1	Amp_19q13.43	0.518	1
RPTN	Amp_7p11.2	0.518	1
SCARF2	Amp_6p22.3	0.518	1
SPTAN1	19q-Amp	0.518	1
ZNF185	Del_4q34.2	0.518	1
19q-Amp	Amp_7p11.2	0.518	1
11p-Del	Del_16q23.1	0.518	1
17p-Del	Del_16q23.1	0.518	1
DNAH6	Del_8p21.3	0.519	1
TXNIP	Del_8p21.3	0.519	1
Del_8p23.3	Del_9p21.3	0.519	1
ARID1A	14q-Del	0.52	1
CSMD3	Amp_1q21.3	0.52	1
CUL1	Del_14q24.1	0.52	1
ERBB2	Del_12p13.1	0.52	1
METTL3	18q-Del	0.52	1
RB1	Amp_4q13.3	0.52	1
RB1	Del_7q36.3	0.52	1
RPTN	9p-Del	0.52	1
ZBTB7B	ZFP36L1	0.52	1
ZFP36L1	Amp_6q21	0.52	1
3p-Amp	Del_14q24.1	0.52	1
4p-Del	Amp_5p15.33	0.52	1
Amp_11q13.3	Del_8p21.3	0.52	1
Amp_19q12	Del_12p13.1	0.52	1
ARID1B	GNA13	0.521	1
ARID1B	17q-Amp	0.521	1
ASXL2	Del_2q37.1	0.521	1
CSMD3	EP300	0.521	1
FAT1	FBXW7	0.521	1
FGFR3	Del_10q23.31	0.521	1
GNA13	KLF5	0.521	1
KLF5	Amp_17q23.3	0.521	1
MLL3	Amp_17q12	0.521	1
STAG2	17p-Del	0.521	1
STAG2	Amp_11q13.3	0.521	1
TMCO4	7p-Amp	0.521	1
11p-Del	Amp_8p11.23	0.521	1
4q-Del	Del_Xq21.33	0.521	1
5q-Del	Amp_4p16.3	0.521	1
CREBBP	Del_16p13.3	0.522	1
HES1	8q-Amp	0.522	1
KLF5	Amp_20q11.21	0.522	1
RUNX1	Del_2q34	0.522	1
STAG2	Del_6q27	0.522	1
5p-Amp	4q-Del	0.522	1
Amp_6q21	Del_18q23	0.522	1
HLA-A	18q-Del	0.523	1
MLL	Del_16q23.1	0.523	1
MLL3	5p-Amp	0.523	1
RB1	3q-Amp	0.523	1
SPTAN1	20p-Amp	0.523	1
UNC93B1	Del_14q24.1	0.523	1
4q-Del	Amp_5p15.33	0.523	1
9p-Del	Del_15q13.1	0.523	1
ATM	15q-Del	0.524	1
DNAH6	8p-Del	0.524	1
PIK3CA	RHOB	0.524	1
PKHD1	Del_6q27	0.524	1
RPTN	Amp_8q22.3	0.524	1
SF1	8p-Del	0.524	1
SPTAN1	Del_2q34	0.524	1
TXNIP	8p-Del	0.524	1
Del_4q22.1	Del_11q23.3	0.524	1
CDKN2A	STAG2	0.525	1
CDKN2A	Amp_8p11.23	0.525	1
CDKN2A	Del_16p13.3	0.525	1
CTNNB1	KDM6A	0.525	1
FGFR3	RHOB	0.525	1
FOXQ1	KDM6A	0.525	1
ZNF185	Amp_11q13.3	0.525	1
ZNF185	Del_10q23.31	0.525	1
Amp_7p11.2	Del_18q23	0.525	1
CDKN2A	ERBB3	0.526	1
FAM47C	10q-Del	0.526	1
FAM47C	6q-Del	0.526	1
FOXA1	PSIP1	0.526	1
FOXQ1	PSIP1	0.526	1
PIK3CA	Del_2q22.1	0.526	1
PSIP1	PTEN	0.526	1
PTEN	7q-Amp	0.526	1
PTEN	15q-Del	0.526	1
RAI1	Del_15q13.1	0.526	1
RBM10	6q-Del	0.526	1
RBM10	Del_15q13.1	0.526	1
1q-Amp	7q-Amp	0.526	1
1q-Amp	15q-Del	0.526	1
4p-Del	Amp_11q13.3	0.526	1
MLL	Amp_19q13.43	0.527	1
MLL3	Del_11q25	0.527	1
RUNX1	Del_8p23.3	0.527	1
11q-Del	Del_4q34.2	0.527	1
Del_8p23.3	Del_Xp11.3	0.527	1
NF1	Del_9p23	0.528	1
RBM10	Del_9p23	0.528	1
ZFP36L1	4p-Del	0.528	1
5p-Amp	Del_22q13.32	0.528	1
Amp_8p11.21	Amp_11q13.3	0.528	1
Amp_8p11.21	Del_10q23.31	0.528	1
BCL2L1	Amp_10p14	0.529	1
CTNNB1	Amp_19q12	0.529	1
ELF3	Del_2q22.1	0.529	1
ERBB2	FOXQ1	0.529	1
ERBB2	1q-Amp	0.529	1
ERCC2	Amp_20q11.21	0.529	1
FOXA1	Amp_19q12	0.529	1
GNA13	Del_9p23	0.529	1
MBD1	Del_9p23	0.529	1
PTEN	Amp_19q12	0.529	1
8p-Del	Del_9p21.3	0.529	1
CDKN1A	SCARF2	0.53	1
CDKN1A	19p-Del	0.53	1
CREBBP	ERBB2	0.53	1
EP300	KIAA1267	0.53	1
EP300	NFE2L2	0.53	1
ERCC2	Del_2q22.1	0.53	1
FAT1	Del_4q34.2	0.53	1
PKHD1	8q-Amp	0.53	1
PLCXD3	Del_3p14.2	0.53	1
20q-Amp	Del_4q34.2	0.53	1
7q-Amp	Del_2q37.1	0.53	1
8q-Amp	Amp_16p13.2	0.53	1
11p-Del	Amp_11q22.2	0.53	1
Amp_19q12	Del_11q25	0.53	1
CNOT1	Del_2q34	0.531	1
CSMD3	Del_1q32.1	0.531	1
CSMD3	Del_Xq21.33	0.531	1
ERBB3	KDM6A	0.531	1
FGFR3	GNA13	0.531	1
FGFR3	Del_1q32.1	0.531	1
FGFR3	Del_Xq21.33	0.531	1
FOXA1	Del_11p15.5	0.531	1
FOXQ1	Del_11p15.5	0.531	1
GNA13	Amp_8p11.23	0.531	1
GNA13	Del_16p13.3	0.531	1
MBD1	STAG2	0.531	1
STAG2	Del_1q32.1	0.531	1
TMCO4	Amp_8p11.23	0.531	1
UNC93B1	Del_17p12	0.531	1
17q-Amp	Del_16p13.3	0.531	1
Amp_8p11.23	Del_1q32.1	0.531	1
EP300	ZBTB7B	0.532	1
EP300	Amp_6q21	0.532	1
RPTN	Amp_5p15.33	0.532	1
20p-Amp	11q-Del	0.532	1
Amp_3p25.2	Amp_4p16.3	0.532	1
Amp_4p16.3	Amp_4q13.3	0.532	1
ATM	Del_5q12.1	0.533	1
ELF3	6q-Del	0.533	1
NF2	Amp_10p14	0.533	1
SF1	Amp_10p14	0.533	1
ZFP36L1	Amp_13q22.1	0.533	1
7q-Amp	Amp_19q13.43	0.533	1
10q-Del	Amp_17q23.3	0.533	1
EP300	5p-Amp	0.534	1
KRAS	PARD3	0.534	1
KRAS	Del_12p13.1	0.534	1
PARD3	RUNX1	0.534	1
PARD3	Amp_16p13.2	0.534	1
PIK3CA	3p-Amp	0.534	1
Amp_1q21.3	Del_Xp11.3	0.534	1
ARID1A	Del_13q14.2	0.535	1
ASXL2	NF1	0.535	1
CDKN2A	HES1	0.535	1
CDKN2A	ZBTB7B	0.535	1
CDKN2A	Amp_6q21	0.535	1
DNAH6	Amp_10p14	0.535	1
ERCC2	RB1	0.535	1
FAM47C	RB1	0.535	1
HES1	RHOB	0.535	1
METTL3	Amp_1q23.3	0.535	1
NF1	Amp_17q12	0.535	1
NFE2L2	Del_17p12	0.535	1
PARD3	Amp_8p11.21	0.535	1
RHOB	ZBTB7B	0.535	1
7p-Amp	Del_13q14.2	0.535	1
DNAH6	RHOA	0.536	1
DNAH6	SHANK1	0.536	1
HRAS	RHOA	0.536	1
HRAS	SHANK1	0.536	1
KRAS	MLL2	0.536	1
20p-Amp	Amp_3q26.33	0.536	1
8q-Amp	Del_2q34	0.536	1
ASXL2	Amp_4p16.3	0.537	1
CREBBP	KLF5	0.537	1
CREBBP	4q-Del	0.537	1
CUL1	3p-Amp	0.537	1
GNA13	NFE2L2	0.537	1
GNA13	RXRA	0.537	1
GNA13	16p-Del	0.537	1
GNA13	22q-Del	0.537	1
MBD1	22q-Del	0.537	1
MBD1	Amp_11q22.2	0.537	1
METTL3	3p-Amp	0.537	1
RXRA	TMCO4	0.537	1
RXRA	Del_Xq21.33	0.537	1
TMCO4	Amp_11q22.2	0.537	1
17q-Amp	Amp_11q22.2	0.537	1
Amp_4p16.3	Amp_17q12	0.537	1
Amp_10p14	Del_12p13.1	0.537	1
Amp_11q22.2	Del_1q32.1	0.537	1
Amp_11q22.2	Del_Xq21.33	0.537	1
PLCXD3	Del_11q25	0.538	1
PSIP1	Amp_3q26.33	0.538	1
7q-Amp	Amp_11q13.3	0.538	1
7q-Amp	Del_10q23.31	0.538	1
ARID1A	CSMD3	0.539	1
ARID1A	ZBTB7B	0.539	1
CDKN1A	Amp_16p13.2	0.539	1
CSMD3	ZNF185	0.539	1
IDH1	3q-Amp	0.539	1
IDH1	10q-Del	0.539	1
IDH1	Del_15q13.1	0.539	1
TP53	8q-Amp	0.539	1
TP53	Del_18q23	0.539	1
ZBTB7B	Amp_5p15.33	0.539	1
11q-Del	Amp_16p13.2	0.539	1
9q-Del	Del_19p13.3	0.54	1
ARID1B	NF1	0.541	1
CNNM4	FBXW7	0.541	1
CNNM4	Amp_1p34.2	0.541	1
CSMD3	TP53	0.541	1
ERBB3	NRAS	0.541	1
ERBB3	NUDT11	0.541	1
FBXW7	SF1	0.541	1
FOXA1	Amp_8p11.21	0.541	1
FOXA1	Del_2q22.1	0.541	1
HRAS	MLL	0.541	1
HRAS	Del_6p25.3	0.541	1
HRAS	Del_16q23.1	0.541	1
MLL	TXNIP	0.541	1
THRAP3	Del_2q22.1	0.541	1
TXNIP	Amp_13q22.1	0.541	1
10q-Del	Amp_19q13.43	0.541	1
Amp_3p25.2	Del_1p36.11	0.541	1
ERBB2	PKHD1	0.542	1
Amp_8q22.3	Del_2q34	0.542	1
MBD1	Amp_8q22.3	0.543	1
TMCO4	Amp_8q22.3	0.543	1
Amp_8q22.3	Del_Xq21.33	0.543	1
CDKN2A	Del_22q13.32	0.544	1
CNOT1	FOXQ1	0.544	1
CNOT1	PTEN	0.544	1
CNOT1	Del_1p36.11	0.544	1
CTNNB1	RAI1	0.544	1
ELF3	Amp_4q13.3	0.544	1
ELF3	Del_7q36.3	0.544	1
FAM47C	1q-Amp	0.544	1
FAM47C	Del_1p36.11	0.544	1
FBXW7	9q-Del	0.544	1
FOXA1	RBM10	0.544	1
FOXQ1	RBM10	0.544	1
KDM6A	Del_2q22.1	0.544	1
PTEN	RAI1	0.544	1
RAI1	Del_1p36.11	0.544	1
RBM10	THRAP3	0.544	1
RPTN	Amp_17q23.3	0.544	1
RPTN	Del_3p14.2	0.544	1
Amp_17q23.3	Del_7q36.3	0.544	1
ATM	KRAS	0.545	1
ATM	Del_Xp11.3	0.545	1
Del_4q34.2	Del_Xp11.3	0.545	1
EP300	Amp_16p13.2	0.546	1
ERBB2	PLCXD3	0.546	1
FBXW7	KIAA1267	0.546	1
FBXW7	RXRA	0.546	1
FBXW7	Amp_11q22.2	0.546	1
NF1	5p-Amp	0.546	1
PLCXD3	Amp_19q12	0.546	1
RXRA	Amp_1p34.2	0.546	1
SPTAN1	Amp_12q15	0.546	1
SPTAN1	Amp_13q22.1	0.546	1
SPTAN1	Del_6p25.3	0.546	1
SPTAN1	Del_16q23.1	0.546	1
Amp_7p11.2	Del_6p25.3	0.546	1
CSMD3	Amp_19q12	0.547	1
7p-Amp	Amp_1q21.3	0.547	1
CDKN2A	KDM6A	0.548	1
5p-Amp	Del_2q22.1	0.548	1
CDKN2A	Del_9p23	0.549	1
ERBB3	Amp_8p11.23	0.549	1
KDM6A	Del_11p15.5	0.549	1
ZBTB7B	4p-Del	0.549	1
ZFP36L1	Amp_7p11.2	0.549	1
7p-Amp	9q-Del	0.549	1
4p-Del	Amp_6q21	0.549	1
ARID1A	HLA-A	0.55	1
ARID1B	KRAS	0.55	1
ERCC2	Del_11q23.3	0.55	1
KRAS	4q-Del	0.55	1
NF1	20q-Amp	0.55	1
NRAS	Amp_5p15.33	0.55	1
NUDT11	Amp_5p15.33	0.55	1
RUNX1	4q-Del	0.55	1
7q-Amp	11q-Del	0.55	1
4q-Del	Del_Xp11.3	0.55	1
CDKN2A	14q-Del	0.551	1
ELF3	FAT1	0.551	1
EP300	RHOA	0.551	1
HES1	5p-Amp	0.551	1
HLA-A	Del_22q13.32	0.551	1
NRAS	20p-Amp	0.551	1
NUDT11	Del_22q13.32	0.551	1
PARD3	PIK3CA	0.551	1
PSIP1	RPTN	0.551	1
PSIP1	19q-Amp	0.551	1
PSIP1	Del_7q36.3	0.551	1
RHOA	17p-Del	0.551	1
RHOB	14q-Del	0.551	1
ZBTB7B	5p-Amp	0.551	1
7q-Amp	Del_7q36.3	0.551	1
19p-Del	Del_4q22.1	0.551	1
Amp_17q23.3	Del_11q23.3	0.551	1
CDKN1A	Amp_13q22.1	0.552	1
CDKN1A	Del_6p25.3	0.552	1
CDKN1A	Del_16q23.1	0.552	1
CREBBP	3q-Amp	0.552	1
CREBBP	Del_2q22.1	0.552	1
CREBBP	Del_15q13.1	0.552	1
ELF3	22q-Del	0.552	1
ELF3	Amp_11q22.2	0.552	1
ERBB2	KLF5	0.552	1
ERBB2	7p-Amp	0.552	1
FAT1	Amp_3q26.33	0.552	1
FAT1	Amp_11q13.3	0.552	1
GNA13	ZFP36L1	0.552	1
KRAS	Del_8p21.3	0.552	1
MLL3	RHOB	0.552	1
MLL3	19q-Amp	0.552	1
NFE2L2	Amp_17q23.3	0.552	1
RHOA	18q-Del	0.552	1
RHOA	Del_14q24.1	0.552	1
RUNX1	Del_8p21.3	0.552	1
RXRA	Del_3p14.2	0.552	1
SHANK1	18q-Del	0.552	1
SHANK1	Del_14q24.1	0.552	1
TMCO4	Amp_22q12.2	0.552	1
19q-Amp	Del_2q37.1	0.552	1
3q-Amp	Amp_7p21.1	0.552	1
7p-Amp	Amp_19q12	0.552	1
10q-Del	Amp_7p21.1	0.552	1
11q-Del	Amp_13q22.1	0.552	1
16p-Del	Del_3p14.2	0.552	1
22q-Del	Amp_17q23.3	0.552	1
5q-Del	Amp_13q22.1	0.552	1
Amp_8p11.21	Del_11q25	0.552	1
Amp_8q22.3	Del_19p13.3	0.552	1
Amp_22q12.2	Del_1q32.1	0.552	1
Del_8p21.3	Del_Xp11.3	0.552	1
CTNNB1	FAT1	0.553	1
CTNNB1	Del_11q23.3	0.553	1
FAT1	FOXQ1	0.553	1
FAT1	1q-Amp	0.553	1
FOXA1	20q-Amp	0.553	1
FOXQ1	20q-Amp	0.553	1
FOXQ1	Del_11q23.3	0.553	1
NF1	NF2	0.553	1
PARD3	Del_15q13.1	0.553	1
PTEN	Del_11q23.3	0.553	1
6q-Del	Del_12p13.1	0.553	1
Del_12p13.1	Del_15q13.1	0.553	1
ASXL2	Del_4q34.2	0.554	1
ASXL2	Del_13q14.2	0.554	1
CNOT1	Amp_1q23.3	0.554	1
CREBBP	8p-Del	0.554	1
CUL1	Del_9p23	0.554	1
ELF3	Del_11p15.5	0.554	1
ERBB3	14q-Del	0.554	1
MLL2	RXRA	0.554	1
MLL2	22q-Del	0.554	1
PIK3CA	19p-Del	0.554	1
8p-Del	Amp_3p25.2	0.554	1
ASXL2	Amp_5p15.33	0.555	1
ATM	Amp_6p22.3	0.555	1
CDKN1A	Del_8p23.3	0.555	1
DNAH6	Amp_7p11.2	0.555	1
ERBB2	Del_8p21.3	0.555	1
ERCC2	TP53	0.555	1
MLL2	5p-Amp	0.555	1
NF1	Del_4q22.1	0.555	1
RB1	20q-Amp	0.555	1
Amp_5p15.33	Amp_17q12	0.555	1
CREBBP	Amp_4q13.3	0.556	1
CREBBP	Del_7q36.3	0.556	1
DNAH6	Amp_4p16.3	0.556	1
KRAS	Amp_3q26.33	0.556	1
KRAS	Del_10q23.31	0.556	1
RPTN	Amp_7p21.1	0.556	1
TXNIP	Amp_4p16.3	0.556	1
Amp_3q26.33	Del_Xp11.3	0.556	1
Amp_4q13.3	Del_6q27	0.556	1
FGFR3	4p-Del	0.557	1
MLL2	Del_16p13.3	0.557	1
3p-Amp	9q-Del	0.557	1
14q-Del	Amp_8p11.23	0.557	1
C3orf70	RHOA	0.558	1
METTL3	RHOA	0.558	1
PIK3CA	20q-Amp	0.558	1
RHOA	3p-Amp	0.558	1
SHANK1	3p-Amp	0.558	1
ARID1A	6q-Del	0.559	1
ATM	CNOT1	0.559	1
RB1	SF1	0.559	1
SF1	Amp_1q23.3	0.559	1
DNAH6	Del_17p12	0.56	1
FAT1	Del_17p12	0.56	1
HLA-A	Amp_12q15	0.56	1
HLA-A	Del_16q23.1	0.56	1
HRAS	Del_17p12	0.56	1
MLL	NRAS	0.56	1
NUDT11	Amp_13q22.1	0.56	1
UNC93B1	Del_6p25.3	0.56	1
UNC93B1	Del_16q23.1	0.56	1
Amp_6q21	Del_13q14.2	0.56	1
Amp_16p13.2	Del_2q22.1	0.56	1
ARID1A	MLL3	0.561	1
CNOT1	Amp_19q13.43	0.561	1
CTNNB1	Del_12p13.1	0.561	1
ERCC2	SCARF2	0.561	1
ERCC2	19p-Del	0.561	1
FAM47C	Amp_19q13.43	0.561	1
FAT1	PLCXD3	0.561	1
FOXA1	PARD3	0.561	1
FOXA1	Del_12p13.1	0.561	1
FOXQ1	Del_12p13.1	0.561	1
MLL	Amp_3q26.33	0.561	1
MLL	Del_10q23.31	0.561	1
PLCXD3	Del_8p21.3	0.561	1
PLCXD3	Del_11q23.3	0.561	1
PTEN	Del_12p13.1	0.561	1
RHOB	Del_16q23.1	0.561	1
Amp_11q13.3	Del_6p25.3	0.561	1
Amp_11q13.3	Del_16q23.1	0.561	1
Del_1p36.11	Del_12p13.1	0.561	1
CDKN1A	10q-Del	0.562	1
STAG2	Amp_3p25.2	0.562	1
20p-Amp	3p-Amp	0.562	1
Amp_19q12	Del_5q12.1	0.562	1
BCL2L1	Del_2q37.1	0.563	1
CSMD3	RB1	0.563	1
RB1	Amp_8p11.23	0.563	1
CSMD3	PSIP1	0.564	1
ERBB3	Del_11q25	0.564	1
KIAA1267	Amp_20q11.21	0.564	1
MLL2	Del_22q13.32	0.564	1
PSIP1	Del_16p13.3	0.564	1
RXRA	Amp_20q11.21	0.564	1
7q-Amp	Del_16p13.3	0.564	1
10q-Del	Amp_8q22.3	0.564	1
NF1	22q-Del	0.565	1
PARD3	Del_2q34	0.565	1
7q-Amp	Del_11p15.5	0.565	1
ARID1A	Del_5q12.1	0.566	1
ASXL2	7q-Amp	0.566	1
CDKN2A	17q-Amp	0.566	1
CNNM4	PKHD1	0.566	1
GNA13	RHOB	0.566	1
KIAA1267	RUNX1	0.566	1
KRAS	NFE2L2	0.566	1
KRAS	16p-Del	0.566	1
KRAS	Amp_11q22.2	0.566	1
MBD1	RHOB	0.566	1
RHOB	Del_Xq21.33	0.566	1
RUNX1	RXRA	0.566	1
RUNX1	Amp_11q22.2	0.566	1
RXRA	Del_Xp11.3	0.566	1
SF1	Amp_16p13.2	0.566	1
ZNF185	8q-Amp	0.566	1
ZNF185	Del_18q23	0.566	1
20p-Amp	Del_3p14.2	0.566	1
7q-Amp	Amp_17q12	0.566	1
22q-Del	Del_Xp11.3	0.566	1
9q-Del	Del_22q13.32	0.566	1
Amp_1q21.3	Amp_13q22.1	0.566	1
Amp_7p11.2	Del_4q34.2	0.566	1
Amp_11q22.2	Del_Xp11.3	0.566	1
ARID1B	Amp_8p11.21	0.568	1
C3orf70	8p-Del	0.568	1
CREBBP	22q-Del	0.568	1
CREBBP	Amp_11q22.2	0.568	1
ERBB2	19q-Amp	0.568	1
HLA-A	SPTAN1	0.568	1
KIAA1267	Del_11q25	0.568	1
NFE2L2	Del_11q25	0.568	1
NRAS	SPTAN1	0.568	1
PKHD1	Del_9p23	0.568	1
RPTN	Amp_19q12	0.568	1
SCARF2	Del_9p23	0.568	1
7p-Amp	Del_2q22.1	0.568	1
16p-Del	Amp_7p21.1	0.568	1
22q-Del	Amp_7p21.1	0.568	1
4q-Del	Amp_8p11.21	0.568	1
ARID1A	17p-Del	0.569	1
CDKN1A	MLL2	0.569	1
CNOT1	Amp_4q13.3	0.569	1
ERCC2	Del_2q34	0.569	1
FAM47C	RPTN	0.569	1
FAM47C	Del_7q36.3	0.569	1
HES1	Del_5q12.1	0.569	1
RAI1	RPTN	0.569	1
RAI1	Amp_4q13.3	0.569	1
RAI1	Del_7q36.3	0.569	1
RBM10	19q-Amp	0.569	1
ZBTB7B	9q-Del	0.569	1
ERBB2	6q-Del	0.57	1
ERBB2	Del_15q13.1	0.57	1
FOXA1	Amp_20q11.21	0.57	1
KDM6A	20p-Amp	0.57	1
MLL	Del_2q37.1	0.57	1
5p-Amp	Del_17p12	0.57	1
6q-Del	Amp_19q12	0.57	1
Amp_20q11.21	Del_1p36.11	0.57	1
CREBBP	Amp_1q23.3	0.571	1
KRAS	PIK3CA	0.571	1
18q-Del	19p-Del	0.571	1
9q-Del	Amp_17q12	0.571	1
Amp_8p11.23	Del_2q22.1	0.571	1
CNOT1	Del_2q37.1	0.572	1
FAM47C	Del_2q37.1	0.572	1
KIAA1267	Del_13q14.2	0.572	1
MBD1	8q-Amp	0.572	1
MLL3	Del_10q23.31	0.572	1
TMCO4	Del_18q23	0.572	1
17q-Amp	Del_18q23	0.572	1
Del_1q32.1	Del_18q23	0.572	1
Del_18q23	Del_Xq21.33	0.572	1
CNNM4	Del_8p23.3	0.573	1
EP300	ZNF185	0.573	1
FAM47C	Amp_3q26.33	0.573	1
IDH1	11q-Del	0.573	1
IDH1	Del_19p13.3	0.573	1
KIAA1267	TP53	0.573	1
MLL2	8q-Amp	0.573	1
NF2	Del_8p23.3	0.573	1
RAI1	Amp_3q26.33	0.573	1
RAI1	Del_10q23.31	0.573	1
TP53	22q-Del	0.573	1
ZNF185	11p-Del	0.573	1
ZNF185	17p-Del	0.573	1
Amp_10p14	Del_19p13.3	0.573	1
Amp_11q13.3	Amp_17q12	0.573	1
CREBBP	Amp_10p14	0.574	1
FAT1	Del_6q27	0.574	1
FAT1	Del_11q25	0.574	1
FBXW7	Amp_10p14	0.574	1
20q-Amp	Del_6q27	0.574	1
DNAH6	15q-Del	0.575	1
FAT1	Del_14q24.1	0.575	1
HRAS	PSIP1	0.575	1
KLF5	Amp_10p14	0.575	1
MLL	Del_13q14.2	0.575	1
PSIP1	TXNIP	0.575	1
RAI1	Del_8p23.3	0.575	1
TXNIP	7q-Amp	0.575	1
Amp_13q22.1	Del_9p21.3	0.575	1
Amp_13q22.1	Del_13q14.2	0.575	1
CUL1	Amp_13q22.1	0.576	1
FBXW7	HES1	0.576	1
FBXW7	ZBTB7B	0.576	1
METTL3	MLL	0.576	1
METTL3	Amp_13q22.1	0.576	1
RB1	Del_12p13.1	0.576	1
Amp_12q15	Amp_17q12	0.576	1
Amp_13q22.1	Amp_17q12	0.576	1
ARID1B	CTNNB1	0.577	1
ARID1B	THRAP3	0.577	1
ARID1B	1q-Amp	0.577	1
CDKN1A	CNOT1	0.577	1
CDKN1A	RBM10	0.577	1
EP300	3q-Amp	0.577	1
EP300	Del_15q13.1	0.577	1
FGFR3	Del_Xp11.3	0.577	1
FOXQ1	KLF5	0.577	1
FOXQ1	7p-Amp	0.577	1
FOXQ1	4q-Del	0.577	1
KLF5	THRAP3	0.577	1
KLF5	1q-Amp	0.577	1
KRAS	Amp_8p11.23	0.577	1
MLL3	Del_11p15.5	0.577	1
PTEN	7p-Amp	0.577	1
PTEN	4q-Del	0.577	1
RAI1	11q-Del	0.577	1
RAI1	Del_19p13.3	0.577	1
THRAP3	4q-Del	0.577	1
22q-Del	Amp_6p22.3	0.577	1
C3orf70	Amp_4p16.3	0.578	1
CNNM4	6q-Del	0.578	1
CNNM4	Del_15q13.1	0.578	1
CREBBP	TSC1	0.578	1
CUL1	Amp_4p16.3	0.578	1
HES1	8p-Del	0.578	1
NF2	6q-Del	0.578	1
PTEN	Amp_1q23.3	0.578	1
RHOB	SPTAN1	0.578	1
SF1	10q-Del	0.578	1
SF1	Del_15q13.1	0.578	1
TSC1	Del_11q25	0.578	1
3q-Amp	7p-Amp	0.578	1
3q-Amp	4q-Del	0.578	1
5p-Amp	Amp_16p13.2	0.578	1
7p-Amp	10q-Del	0.578	1
7p-Amp	6q-Del	0.578	1
7p-Amp	Del_15q13.1	0.578	1
8p-Del	Amp_6q21	0.578	1
BCL2L1	Del_11p15.5	0.579	1
KDM6A	20q-Amp	0.579	1
METTL3	Amp_10p14	0.579	1
PKHD1	Del_9p21.3	0.579	1
FOXQ1	Amp_6p22.3	0.58	1
GNA13	Del_17p12	0.58	1
HRAS	Del_3p14.2	0.58	1
Amp_6p22.3	Del_1p36.11	0.58	1
CDKN1A	Amp_8p11.23	0.581	1
CSMD3	5q-Del	0.581	1
ERBB2	8p-Del	0.581	1
ERBB3	SHANK1	0.581	1
GNA13	14q-Del	0.581	1
KRAS	ZFP36L1	0.581	1
MBD1	14q-Del	0.581	1
STAG2	Del_19p13.3	0.581	1
17q-Amp	14q-Del	0.581	1
14q-Del	Del_Xq21.33	0.581	1
4p-Del	Del_Xq21.33	0.581	1
ARID1B	Del_11q23.3	0.582	1
ASXL2	10q-Del	0.582	1
EP300	TMCO4	0.582	1
EP300	17q-Amp	0.582	1
FAT1	7p-Amp	0.582	1
GNA13	17p-Del	0.582	1
KLF5	20q-Amp	0.582	1
ZFP36L1	Amp_17q23.3	0.582	1
ZFP36L1	Del_3p14.2	0.582	1
17q-Amp	11p-Del	0.582	1
4q-Del	Del_11q23.3	0.582	1
Del_7q36.3	Del_11p15.5	0.582	1
ERBB2	Amp_11q22.2	0.583	1
KDM6A	Amp_11q13.3	0.583	1
KIAA1267	Amp_19q12	0.583	1
Amp_11q22.2	Amp_19q12	0.583	1
ATM	PLCXD3	0.584	1
CNNM4	Del_2q37.1	0.584	1
IDH1	Amp_17q12	0.584	1
MLL3	NF2	0.584	1
MLL3	TP53	0.584	1
NF2	Del_2q37.1	0.584	1
PKHD1	RXRA	0.584	1
PKHD1	Amp_11q22.2	0.584	1
TSC1	5q-Del	0.584	1
16p-Del	Amp_16p13.2	0.584	1
Amp_11q22.2	Amp_16p13.2	0.584	1
ARID1A	Amp_1q21.3	0.585	1
FBXW7	Amp_1q23.3	0.585	1
ELF3	HLA-A	0.586	1
ELF3	NRAS	0.586	1
HES1	KDM6A	0.586	1
HLA-A	Amp_17q23.3	0.586	1
KIAA1267	9q-Del	0.586	1
NFE2L2	9q-Del	0.586	1
NRAS	Del_3p14.2	0.586	1
PARD3	19q-Amp	0.586	1
PARD3	Amp_4q13.3	0.586	1
PARD3	Del_7q36.3	0.586	1
RPTN	Del_12p13.1	0.586	1
UNC93B1	Amp_17q23.3	0.586	1
16p-Del	9q-Del	0.586	1
9q-Del	Amp_11q22.2	0.586	1
Del_7q36.3	Del_12p13.1	0.586	1
ATM	FOXA1	0.587	1
ATM	PTEN	0.587	1
CTNNB1	Del_4q34.2	0.587	1
FBXW7	Amp_11q13.3	0.587	1
FBXW7	Del_10q23.31	0.587	1
HES1	Amp_10p14	0.587	1
MLL2	Del_14q24.1	0.587	1
PARD3	Amp_19q13.43	0.587	1
PIK3CA	Del_8p23.3	0.587	1
RHOA	Del_13q14.2	0.587	1
20p-Amp	Del_6q27	0.587	1
10q-Del	Amp_8p11.21	0.587	1
Amp_1p34.2	Amp_3q26.33	0.587	1
ASXL2	Del_9p21.3	0.588	1
NF1	ZFP36L1	0.588	1
NF1	Amp_22q12.2	0.588	1
4p-Del	Del_6p25.3	0.588	1
9q-Del	Amp_8p11.21	0.588	1
CTNNB1	Amp_1q21.3	0.589	1
ELF3	MLL	0.589	1
METTL3	SPTAN1	0.589	1
MLL3	4p-Del	0.589	1
NF2	TSC1	0.589	1
SF1	TSC1	0.589	1
Amp_12q15	Del_3p14.2	0.589	1
FBXW7	RHOB	0.591	1
FAT1	19q-Amp	0.592	1
HRAS	Amp_8q22.3	0.592	1
KDM6A	4q-Del	0.592	1
PLCXD3	Amp_3q26.33	0.592	1
PLCXD3	Del_10q23.31	0.592	1
19q-Amp	20q-Amp	0.592	1
19q-Amp	Del_11q23.3	0.592	1
Del_7q36.3	Del_11q23.3	0.592	1
CNOT1	TXNIP	0.593	1
CREBBP	TXNIP	0.593	1
CTNNB1	Amp_11q22.2	0.593	1
DNAH6	FAM47C	0.593	1
DNAH6	RAI1	0.593	1
DNAH6	Amp_7p21.1	0.593	1
DNAH6	Del_11q25	0.593	1
FAM47C	TXNIP	0.593	1
FOXA1	16p-Del	0.593	1
FOXA1	22q-Del	0.593	1
FOXQ1	KIAA1267	0.593	1
FOXQ1	NFE2L2	0.593	1
FOXQ1	Amp_11q22.2	0.593	1
HRAS	RAI1	0.593	1
KIAA1267	PTEN	0.593	1
NFE2L2	PTEN	0.593	1
NFE2L2	1q-Amp	0.593	1
PTEN	RXRA	0.593	1
PTEN	16p-Del	0.593	1
PTEN	Amp_11q22.2	0.593	1
RBM10	TXNIP	0.593	1
THRAP3	22q-Del	0.593	1
TXNIP	Amp_7p21.1	0.593	1
1q-Amp	22q-Del	0.593	1
16p-Del	Del_1p36.11	0.593	1
Amp_11q22.2	Del_1p36.11	0.593	1
Del_4q34.2	Del_9p21.3	0.593	1
ASXL2	CNOT1	0.594	1
ASXL2	RBM10	0.594	1
CREBBP	NRAS	0.594	1
CREBBP	NUDT11	0.594	1
CREBBP	UNC93B1	0.594	1
FAT1	Del_9p23	0.594	1
FAT1	Del_13q14.2	0.594	1
HLA-A	Amp_7p21.1	0.594	1
IDH1	Amp_1q21.3	0.594	1
NUDT11	Del_11q25	0.594	1
RAI1	Amp_17q12	0.594	1
UNC93B1	Del_11q25	0.594	1
ZFP36L1	Del_8p23.3	0.594	1
5p-Amp	Amp_22q12.2	0.594	1
9q-Del	Amp_12q15	0.594	1
ARID1B	PIK3CA	0.595	1
FAM47C	Del_17p12	0.595	1
FAT1	Amp_8p11.23	0.595	1
NF2	Del_8p21.3	0.595	1
RAI1	Del_17p12	0.595	1
RBM10	Del_17p12	0.595	1
SHANK1	20p-Amp	0.595	1
SHANK1	Del_22q13.32	0.595	1
STAG2	20q-Amp	0.595	1
CDKN2A	KRAS	0.596	1
CDKN2A	RUNX1	0.596	1
CDKN2A	Del_Xp11.3	0.596	1
CREBBP	Del_2q34	0.596	1
KRAS	RHOB	0.596	1
RHOB	RUNX1	0.596	1
SPTAN1	Amp_17q12	0.596	1
5p-Amp	9p-Del	0.596	1
11q-Del	Del_8p21.3	0.596	1
C3orf70	15q-Del	0.597	1
CUL1	PSIP1	0.597	1
ERBB2	Del_11q23.3	0.597	1
ERCC2	PSIP1	0.597	1
KIAA1267	Del_9p21.3	0.597	1
3p-Amp	7q-Amp	0.597	1
7p-Amp	Del_2q34	0.597	1
Amp_8p11.21	Del_2q22.1	0.597	1
CDKN1A	Amp_20q11.21	0.598	1
CREBBP	ZFP36L1	0.598	1
CTNNB1	Amp_11q13.3	0.598	1
ELF3	EP300	0.598	1
EP300	Amp_17q23.3	0.598	1
ERCC2	Amp_16p13.2	0.598	1
FOXQ1	Del_10q23.31	0.598	1
KIAA1267	Del_2q22.1	0.598	1
RXRA	Del_2q22.1	0.598	1
THRAP3	Amp_11q13.3	0.598	1
ZFP36L1	Amp_7p21.1	0.598	1
1q-Amp	Amp_3q26.33	0.598	1
16p-Del	Amp_8p11.21	0.598	1
22q-Del	Amp_8p11.21	0.598	1
ATM	Del_4q34.2	0.599	1
CDKN2A	17p-Del	0.599	1
DNAH6	MLL3	0.599	1
FOXA1	TP53	0.599	1
FOXQ1	TP53	0.599	1
HRAS	MLL3	0.599	1
MLL	Del_4q22.1	0.599	1
PIK3CA	Amp_8p11.23	0.599	1
RHOA	Amp_4p16.3	0.599	1
8p-Del	Amp_11q22.2	0.599	1
Amp_1q21.3	Del_9p21.3	0.599	1
CNOT1	FGFR3	0.6	1
CNOT1	STAG2	0.6	1
FAM47C	Amp_8p11.23	0.6	1
FGFR3	RAI1	0.6	1
MLL3	SPTAN1	0.6	1
SCARF2	20p-Amp	0.6	1
20p-Amp	19p-Del	0.6	1
Amp_10p14	Del_18q23	0.6	1
CNNM4	Amp_19q13.43	0.601	1
CSMD3	Del_6p25.3	0.601	1
HES1	Amp_16p13.2	0.601	1
KDM6A	Del_19p13.3	0.601	1
MBD1	5p-Amp	0.601	1
MLL2	Del_8p21.3	0.601	1
PKHD1	ZBTB7B	0.601	1
PKHD1	Amp_6q21	0.601	1
17q-Amp	5p-Amp	0.601	1
5p-Amp	Del_Xq21.33	0.601	1
ERBB2	HLA-A	0.602	1
HLA-A	Amp_19q12	0.602	1
KIAA1267	10q-Del	0.602	1
NFE2L2	6q-Del	0.602	1
NUDT11	Amp_19q12	0.602	1
RXRA	10q-Del	0.602	1
UNC93B1	Amp_19q12	0.602	1
20p-Amp	Amp_10p14	0.602	1
3q-Amp	16p-Del	0.602	1
10q-Del	Amp_11q22.2	0.602	1
Amp_11q22.2	Del_15q13.1	0.602	1
ARID1B	Amp_4q13.3	0.603	1
CREBBP	Del_8p23.3	0.603	1
FOXA1	MLL2	0.603	1
KLF5	Amp_4q13.3	0.603	1
KLF5	Del_7q36.3	0.603	1
MLL2	Del_16q23.1	0.603	1
MLL3	TSC1	0.603	1
RPTN	7p-Amp	0.603	1
19q-Amp	7p-Amp	0.603	1
ASXL2	Amp_10p14	0.604	1
ERBB3	Amp_8p11.21	0.604	1
PARD3	5q-Del	0.604	1
19q-Amp	Del_2q34	0.604	1
BCL2L1	Amp_6p22.3	0.605	1
FBXW7	Del_9p21.3	0.605	1
MLL2	ZFP36L1	0.605	1
PLCXD3	Amp_8q22.3	0.605	1
SPTAN1	4p-Del	0.605	1
11q-Del	Amp_19q13.43	0.605	1
14q-Del	Amp_7p11.2	0.605	1
5q-Del	Amp_19q13.43	0.605	1
Del_9p23	Del_15q13.1	0.606	1
ZFP36L1	Amp_16p13.2	0.607	1
Amp_1p34.2	Amp_5p15.33	0.607	1
Amp_3q26.33	Del_12p13.1	0.607	1
Amp_11q13.3	Del_12p13.1	0.607	1
ARID1A	Amp_11q13.3	0.608	1
ERBB2	Del_22q13.32	0.608	1
FBXW7	TMCO4	0.608	1
GNA13	TP53	0.608	1
GNA13	Amp_1p34.2	0.608	1
SF1	Del_11p15.5	0.608	1
SHANK1	Amp_12q15	0.608	1
SHANK1	Amp_13q22.1	0.608	1
TP53	Del_1q32.1	0.608	1
TP53	Del_11q25	0.608	1
17q-Amp	Amp_1p34.2	0.608	1
Amp_1p34.2	Del_Xq21.33	0.608	1
EP300	PIK3CA	0.609	1
FOXA1	Amp_22q12.2	0.609	1
PIK3CA	11p-Del	0.609	1
PIK3CA	17p-Del	0.609	1
SCARF2	Del_6p25.3	0.609	1
SCARF2	Del_17p12	0.609	1
THRAP3	Amp_22q12.2	0.609	1
ZFP36L1	1q-Amp	0.609	1
1q-Amp	Amp_22q12.2	0.609	1
20p-Amp	Amp_3p25.2	0.609	1
19p-Del	Amp_13q22.1	0.609	1
19p-Del	Del_17p12	0.609	1
ARID1B	Amp_8q22.3	0.61	1
BCL2L1	Amp_1q21.3	0.61	1
ELF3	Del_19p13.3	0.61	1
HLA-A	Del_2q22.1	0.61	1
KLF5	Amp_8q22.3	0.61	1
NRAS	Del_2q22.1	0.61	1
NUDT11	Amp_8p11.21	0.61	1
NUDT11	Del_2q22.1	0.61	1
PIK3CA	Del_11q25	0.61	1
RHOB	Del_3p14.2	0.61	1
SHANK1	8p-Del	0.61	1
TXNIP	Del_12p13.1	0.61	1
UNC93B1	Amp_8p11.21	0.61	1
UNC93B1	Del_2q22.1	0.61	1
ZNF185	Amp_10p14	0.61	1
11q-Del	Amp_17q23.3	0.61	1
14q-Del	Del_Xp11.3	0.61	1
4p-Del	Del_Xp11.3	0.61	1
Amp_12q15	Del_6q27	0.61	1
Del_1q32.1	Del_13q14.2	0.61	1
ELF3	SPTAN1	0.611	1
Amp_1q23.3	Del_4q22.1	0.611	1
Amp_7p11.2	Del_3p14.2	0.611	1
CDKN1A	SF1	0.612	1
CNNM4	11q-Del	0.612	1
CNNM4	5q-Del	0.612	1
CNNM4	Del_19p13.3	0.612	1
MLL	8p-Del	0.612	1
MLL3	11p-Del	0.612	1
MLL3	17p-Del	0.612	1
NF2	5q-Del	0.612	1
PSIP1	18q-Del	0.612	1
RB1	3p-Amp	0.612	1
SF1	5q-Del	0.612	1
SF1	Del_19p13.3	0.612	1
8p-Del	Amp_12q15	0.612	1
Amp_5p15.33	Del_11q23.3	0.612	1
Amp_6p22.3	Del_11q23.3	0.612	1
ERBB2	ZFP36L1	0.613	1
FAT1	RXRA	0.613	1
FAT1	22q-Del	0.613	1
FBXW7	14q-Del	0.613	1
HES1	3q-Amp	0.613	1
HES1	6q-Del	0.613	1
HES1	Del_15q13.1	0.613	1
KDM6A	Del_2q34	0.613	1
KIAA1267	Del_11q23.3	0.613	1
NFE2L2	Del_11q23.3	0.613	1
RXRA	Del_11q23.3	0.613	1
ZBTB7B	6q-Del	0.613	1
7p-Amp	Amp_19q13.43	0.613	1
4q-Del	Amp_19q13.43	0.613	1
Amp_17q23.3	Del_9p23	0.613	1
HES1	9p-Del	0.614	1
NF1	Amp_6p22.3	0.614	1
RB1	4q-Del	0.614	1
RB1	Amp_6q21	0.614	1
TSC1	Amp_8p11.21	0.614	1
3p-Amp	Del_17p12	0.614	1
C3orf70	Del_3p14.2	0.615	1
CUL1	ELF3	0.615	1
CUL1	Amp_17q23.3	0.615	1
ELF3	3p-Amp	0.615	1
METTL3	Amp_17q23.3	0.615	1
3p-Amp	Del_3p14.2	0.615	1
C3orf70	CNOT1	0.616	1
C3orf70	FAM47C	0.616	1
CNOT1	3p-Amp	0.616	1
CUL1	FAM47C	0.616	1
CUL1	RAI1	0.616	1
EP300	Del_18q23	0.616	1
ERBB3	TP53	0.616	1
FAM47C	METTL3	0.616	1
METTL3	RAI1	0.616	1
NF1	Amp_3q26.33	0.616	1
NF1	Del_10q23.31	0.616	1
STAG2	Del_17p12	0.616	1
Amp_8p11.23	Del_17p12	0.616	1
DNAH6	Amp_8p11.21	0.617	1
FBXW7	RB1	0.617	1
FBXW7	9p-Del	0.617	1
HRAS	Amp_8p11.21	0.617	1
MLL3	Del_14q24.1	0.617	1
ZFP36L1	Amp_6p22.3	0.617	1
Amp_8q22.3	Del_Xp11.3	0.617	1
ARID1A	Amp_17q23.3	0.618	1
ARID1A	Del_3p14.2	0.618	1
CNNM4	TP53	0.618	1
ELF3	Amp_5p15.33	0.618	1
FAT1	NRAS	0.618	1
FAT1	NUDT11	0.618	1
FBXW7	Del_16p13.3	0.618	1
HLA-A	20q-Amp	0.618	1
HLA-A	Del_11q23.3	0.618	1
NRAS	20q-Amp	0.618	1
NUDT11	Del_11q23.3	0.618	1
SCARF2	Amp_7p11.2	0.618	1
STAG2	Amp_1p34.2	0.618	1
UNC93B1	Del_11q23.3	0.618	1
Amp_5p15.33	Amp_17q23.3	0.618	1
CSMD3	CTNNB1	0.619	1
CSMD3	FOXA1	0.619	1
CSMD3	THRAP3	0.619	1
CTNNB1	Amp_8p11.23	0.619	1
FAM47C	Amp_3p25.2	0.619	1
FAT1	Amp_8p11.21	0.619	1
FGFR3	THRAP3	0.619	1
FGFR3	Del_2q34	0.619	1
FOXQ1	STAG2	0.619	1
FOXQ1	Del_16p13.3	0.619	1
KIAA1267	19q-Amp	0.619	1
KIAA1267	Del_7q36.3	0.619	1
KLF5	Del_9p23	0.619	1
MBD1	Del_5q12.1	0.619	1
NFE2L2	RPTN	0.619	1
NFE2L2	19q-Amp	0.619	1
PTEN	STAG2	0.619	1
PTEN	Amp_8p11.23	0.619	1
RHOA	7q-Amp	0.619	1
RHOA	15q-Del	0.619	1
RPTN	16p-Del	0.619	1
RPTN	22q-Del	0.619	1
RPTN	Amp_11q22.2	0.619	1
RXRA	19q-Amp	0.619	1
RXRA	Amp_4q13.3	0.619	1
SHANK1	7q-Amp	0.619	1
STAG2	THRAP3	0.619	1
17q-Amp	Del_5q12.1	0.619	1
19q-Amp	16p-Del	0.619	1
19q-Amp	22q-Del	0.619	1
19q-Amp	Amp_11q22.2	0.619	1
1q-Amp	Amp_8p11.23	0.619	1
22q-Del	Amp_4q13.3	0.619	1
22q-Del	Del_7q36.3	0.619	1
Amp_7p11.2	Del_4q22.1	0.619	1
Amp_8p11.23	Del_1p36.11	0.619	1
Amp_8p11.23	Del_2q34	0.619	1
Amp_8p11.21	Del_11q23.3	0.619	1
Del_1q32.1	Del_5q12.1	0.619	1
NFE2L2	TSC1	0.62	1
Amp_17q12	Del_12p13.1	0.62	1
ERCC2	10q-Del	0.621	1
MBD1	NF1	0.621	1
NF1	Del_Xq21.33	0.621	1
SPTAN1	Del_5q12.1	0.621	1
Amp_7p11.2	Del_5q12.1	0.621	1
Amp_20q11.21	Del_7q36.3	0.621	1
RHOA	SPTAN1	0.622	1
SHANK1	Amp_7p11.2	0.622	1
ARID1A	Del_22q13.32	0.623	1
ASXL2	CNNM4	0.623	1
CREBBP	EP300	0.623	1
EP300	Del_11q25	0.623	1
5p-Amp	18q-Del	0.623	1
5p-Amp	Del_14q24.1	0.623	1
17p-Del	Amp_7p21.1	0.623	1
CDKN2A	FOXA1	0.624	1
CDKN2A	FOXQ1	0.624	1
CDKN2A	Del_1p36.11	0.624	1
CUL1	Del_9p21.3	0.624	1
ERBB3	Del_11q23.3	0.624	1
HLA-A	Amp_1q23.3	0.624	1
METTL3	Del_9p21.3	0.624	1
PTEN	RHOB	0.624	1
RHOB	1q-Amp	0.624	1
ARID1B	Del_4q34.2	0.625	1
ATM	KLF5	0.625	1
TSC1	Amp_6q21	0.625	1
ZFP36L1	Del_15q13.1	0.625	1
3q-Amp	Del_13q14.2	0.625	1
Amp_8p11.23	Del_2q37.1	0.625	1
ATM	Amp_4q13.3	0.626	1
CDKN2A	Del_11q25	0.626	1
CREBBP	RHOB	0.626	1
CSMD3	Amp_7p11.2	0.626	1
CTNNB1	PIK3CA	0.626	1
FOXA1	PIK3CA	0.626	1
NUDT11	Del_2q34	0.626	1
UNC93B1	Del_2q34	0.626	1
20p-Amp	Amp_4p16.3	0.626	1
ARID1A	CNOT1	0.627	1
ARID1B	TXNIP	0.627	1
CDKN2A	5p-Amp	0.627	1
CNOT1	Amp_5p15.33	0.627	1
DNAH6	KLF5	0.627	1
HRAS	7p-Amp	0.627	1
HRAS	4q-Del	0.627	1
KLF5	TXNIP	0.627	1
PIK3CA	Amp_8q22.3	0.627	1
RHOB	5p-Amp	0.627	1
TXNIP	4q-Del	0.627	1
ZFP36L1	Del_8p21.3	0.627	1
Amp_8p11.21	Amp_10p14	0.627	1
ATM	Amp_16p13.2	0.628	1
C3orf70	Del_11q25	0.628	1
CDKN1A	CREBBP	0.628	1
CDKN1A	Del_6q27	0.628	1
CUL1	Del_6q27	0.628	1
EP300	KRAS	0.628	1
EP300	RUNX1	0.628	1
RB1	ZNF185	0.628	1
RUNX1	11p-Del	0.628	1
RUNX1	17p-Del	0.628	1
7q-Amp	11p-Del	0.628	1
7q-Amp	17p-Del	0.628	1
11p-Del	Del_Xp11.3	0.628	1
Amp_7p21.1	Del_19p13.3	0.628	1
ARID1A	5p-Amp	0.629	1
CDKN1A	KLF5	0.629	1
CDKN1A	7p-Amp	0.629	1
CDKN1A	4q-Del	0.629	1
CSMD3	Amp_1q23.3	0.629	1
DNAH6	FAT1	0.629	1
ERBB2	Del_18q23	0.629	1
ERCC2	Del_5q12.1	0.629	1
HRAS	Del_11q23.3	0.629	1
KLF5	11q-Del	0.629	1
KLF5	Del_19p13.3	0.629	1
SCARF2	Amp_5p15.33	0.629	1
17q-Amp	8p-Del	0.629	1
BCL2L1	PIK3CA	0.63	1
ERBB2	Amp_3p25.2	0.63	1
MLL	Amp_10p14	0.63	1
PSIP1	Amp_8q22.3	0.63	1
RB1	Del_11q25	0.63	1
TXNIP	Del_11p15.5	0.63	1
EP300	14q-Del	0.631	1
EP300	4p-Del	0.631	1
EP300	Amp_11q13.3	0.631	1
Amp_4q13.3	Amp_6p22.3	0.631	1
SPTAN1	Del_6q27	0.632	1
TP53	19p-Del	0.632	1
Del_9p23	Del_22q13.32	0.632	1
GNA13	PKHD1	0.633	1
GNA13	Amp_16p13.2	0.633	1
MBD1	Amp_16p13.2	0.633	1
PKHD1	Del_1q32.1	0.633	1
PKHD1	Del_Xq21.33	0.633	1
SF1	Del_4q22.1	0.633	1
17q-Amp	Amp_16p13.2	0.633	1
Amp_16p13.2	Del_1q32.1	0.633	1
ASXL2	ELF3	0.634	1
CSMD3	Del_12p13.1	0.634	1
ELF3	Amp_3q26.33	0.634	1
ERCC2	Del_11p15.5	0.634	1
PARD3	Amp_8p11.23	0.634	1
PKHD1	TP53	0.634	1
STAG2	Del_12p13.1	0.634	1
Amp_11q13.3	Amp_17q23.3	0.634	1
Del_12p13.1	Del_16p13.3	0.634	1
ELF3	19p-Del	0.635	1
RPTN	Amp_22q12.2	0.635	1
ZFP36L1	19q-Amp	0.635	1
ZFP36L1	Del_7q36.3	0.635	1
19q-Amp	Amp_22q12.2	0.635	1
MLL2	Del_17p12	0.636	1
UNC93B1	Del_8p23.3	0.636	1
ATM	Amp_7p21.1	0.637	1
ELF3	14q-Del	0.637	1
ELF3	4p-Del	0.637	1
EP300	Del_17p12	0.637	1
FAM47C	RHOA	0.637	1
RBM10	RHOA	0.637	1
RPTN	Amp_11q13.3	0.637	1
19q-Amp	Amp_11q13.3	0.637	1
Amp_3q26.33	Del_7q36.3	0.637	1
Amp_4q13.3	Amp_11q13.3	0.637	1
Amp_11q13.3	Del_7q36.3	0.637	1
Del_4q34.2	Del_11q25	0.637	1
FOXQ1	4p-Del	0.638	1
GNA13	Amp_10p14	0.638	1
PTEN	14q-Del	0.638	1
RUNX1	Amp_1p34.2	0.638	1
THRAP3	14q-Del	0.638	1
THRAP3	4p-Del	0.638	1
1q-Amp	4p-Del	0.638	1
14q-Del	Del_1p36.11	0.638	1
ERBB2	Del_8p23.3	0.639	1
KDM6A	16p-Del	0.639	1
KLF5	Amp_11q13.3	0.639	1
MLL	Amp_4p16.3	0.639	1
RUNX1	Del_17p12	0.639	1
19q-Amp	Amp_1q23.3	0.639	1
7p-Amp	Amp_3q26.33	0.639	1
4q-Del	Amp_11q13.3	0.639	1
Amp_4p16.3	Amp_13q22.1	0.639	1
Amp_6q21	Del_2q37.1	0.639	1
CNOT1	18q-Del	0.64	1
CNOT1	Del_14q24.1	0.64	1
ERBB2	3p-Amp	0.64	1
FAM47C	Del_14q24.1	0.64	1
FBXW7	MLL	0.64	1
FBXW7	Amp_13q22.1	0.64	1
FBXW7	Del_6p25.3	0.64	1
FBXW7	Del_16q23.1	0.64	1
PLCXD3	17p-Del	0.64	1
RAI1	Del_14q24.1	0.64	1
SF1	Amp_20q11.21	0.64	1
3q-Amp	9q-Del	0.64	1
Amp_1p34.2	Amp_12q15	0.64	1
Amp_1p34.2	Del_16q23.1	0.64	1
ATM	NRAS	0.641	1
CDKN2A	ERBB2	0.641	1
CDKN2A	Del_13q14.2	0.641	1
ERBB3	15q-Del	0.641	1
FAT1	Del_11q23.3	0.641	1
MLL2	SPTAN1	0.641	1
RHOB	Del_13q14.2	0.641	1
TXNIP	Del_2q34	0.641	1
ARID1A	3p-Amp	0.642	1
ARID1A	Amp_20q11.21	0.642	1
CREBBP	Amp_8q22.3	0.642	1
ERCC2	SPTAN1	0.642	1
MLL2	NRAS	0.642	1
MLL2	NUDT11	0.642	1
MLL2	UNC93B1	0.642	1
CUL1	Del_2q37.1	0.643	1
DNAH6	KIAA1267	0.643	1
DNAH6	16p-Del	0.643	1
DNAH6	22q-Del	0.643	1
ERCC2	TSC1	0.643	1
FAT1	Amp_22q12.2	0.643	1
FOXQ1	Del_9p23	0.643	1
HRAS	KIAA1267	0.643	1
HRAS	RXRA	0.643	1
HRAS	16p-Del	0.643	1
IDH1	20p-Amp	0.643	1
KDM6A	Amp_7p11.2	0.643	1
MLL2	Amp_20q11.21	0.643	1
NFE2L2	TXNIP	0.643	1
CREBBP	SCARF2	0.644	1
CREBBP	Del_9p23	0.644	1
ERCC2	NF2	0.644	1
ERCC2	SF1	0.644	1
PKHD1	Amp_3q26.33	0.644	1
18q-Del	Amp_13q22.1	0.644	1
19p-Del	Amp_7p21.1	0.644	1
Amp_3q26.33	Amp_16p13.2	0.644	1
Amp_12q15	Del_14q24.1	0.644	1
ASXL2	7p-Amp	0.645	1
ERBB2	KDM6A	0.645	1
KLF5	Amp_17q12	0.645	1
ZBTB7B	Del_8p23.3	0.645	1
ZNF185	Del_2q37.1	0.645	1
Amp_5p15.33	Del_11p15.5	0.645	1
Amp_6q21	Del_8p23.3	0.645	1
Amp_7p11.2	Del_17p12	0.645	1
ERBB2	11q-Del	0.646	1
ERBB2	5q-Del	0.646	1
ERBB2	Del_19p13.3	0.646	1
GNA13	3q-Amp	0.646	1
GNA13	Del_15q13.1	0.646	1
MBD1	10q-Del	0.646	1
TMCO4	3q-Amp	0.646	1
TMCO4	6q-Del	0.646	1
17q-Amp	Del_15q13.1	0.646	1
3q-Amp	Del_1q32.1	0.646	1
3q-Amp	Del_Xq21.33	0.646	1
10q-Del	Del_1q32.1	0.646	1
11q-Del	Amp_19q12	0.646	1
Amp_19q13.43	Del_4q22.1	0.646	1
Del_1q32.1	Del_15q13.1	0.646	1
CNNM4	Amp_6p22.3	0.647	1
NF1	20p-Amp	0.647	1
NF2	Amp_6p22.3	0.647	1
5q-Del	Amp_17q12	0.647	1
CDKN1A	Amp_6q21	0.648	1
CDKN2A	10q-Del	0.648	1
EP300	ERBB2	0.648	1
EP300	Del_9p23	0.648	1
SHANK1	Amp_17q23.3	0.648	1
ZBTB7B	5q-Del	0.648	1
8q-Amp	11q-Del	0.648	1
8q-Amp	Del_19p13.3	0.648	1
Amp_6q21	Del_19p13.3	0.648	1
KDM6A	Amp_8p11.23	0.649	1
NF2	Amp_8q22.3	0.649	1
NRAS	Amp_3q26.33	0.649	1
NUDT11	Del_10q23.31	0.649	1
UNC93B1	Amp_11q13.3	0.649	1
UNC93B1	Del_10q23.31	0.649	1
8p-Del	Amp_4p16.3	0.649	1
ARID1B	METTL3	0.65	1
C3orf70	KLF5	0.65	1
CDKN2A	19q-Amp	0.65	1
CDKN2A	Del_7q36.3	0.65	1
CUL1	4q-Del	0.65	1
KIAA1267	9p-Del	0.65	1
KLF5	METTL3	0.65	1
NF1	RB1	0.65	1
NF1	9p-Del	0.65	1
RB1	RXRA	0.65	1
3p-Amp	4q-Del	0.65	1
9q-Del	Del_13q14.2	0.65	1
Amp_8p11.21	Amp_12q15	0.65	1
Amp_11q13.3	Del_14q24.1	0.65	1
ARID1A	Amp_7p21.1	0.651	1
ASXL2	9p-Del	0.651	1
KDM6A	MBD1	0.651	1
KDM6A	17q-Amp	0.651	1
NF1	Del_Xp11.3	0.651	1
PKHD1	4p-Del	0.651	1
RBM10	Del_18q23	0.651	1
4p-Del	Amp_16p13.2	0.651	1
ASXL2	Del_11q25	0.652	1
C3orf70	Del_2q22.1	0.652	1
CREBBP	Amp_17q12	0.652	1
METTL3	Amp_8p11.21	0.652	1
MLL2	ZBTB7B	0.652	1
MLL2	Amp_6q21	0.652	1
SCARF2	Amp_19q12	0.652	1
Amp_7p21.1	Amp_17q12	0.652	1
Amp_17q12	Del_6q27	0.652	1
CDKN1A	KIAA1267	0.653	1
CDKN1A	NFE2L2	0.653	1
CDKN1A	RXRA	0.653	1
CDKN1A	22q-Del	0.653	1
CNOT1	Amp_20q11.21	0.653	1
CREBBP	14q-Del	0.653	1
CREBBP	4p-Del	0.653	1
FAM47C	Amp_20q11.21	0.653	1
IDH1	Amp_12q15	0.653	1
IDH1	Amp_13q22.1	0.653	1
KIAA1267	Del_19p13.3	0.653	1
MLL2	8p-Del	0.653	1
NFE2L2	11q-Del	0.653	1
NUDT11	Del_8p21.3	0.653	1
RAI1	Amp_20q11.21	0.653	1
RXRA	11q-Del	0.653	1
UNC93B1	Del_8p21.3	0.653	1
Amp_11q22.2	Del_19p13.3	0.653	1
CNNM4	18q-Del	0.654	1
CNNM4	Del_14q24.1	0.654	1
ELF3	Del_13q14.2	0.654	1
NF2	18q-Del	0.654	1
RB1	Amp_3p25.2	0.654	1
RHOB	Del_5q12.1	0.654	1
SF1	18q-Del	0.654	1
SF1	Del_14q24.1	0.654	1
9p-Del	Amp_3p25.2	0.654	1
ARID1A	Amp_5p15.33	0.655	1
CDKN2A	Amp_6p22.3	0.655	1
ERBB2	MLL2	0.655	1
MLL2	Amp_19q12	0.655	1
SF1	Amp_1q21.3	0.655	1
SHANK1	Del_12p13.1	0.655	1
3q-Amp	Del_4q34.2	0.655	1
ATM	RXRA	0.656	1
CDKN2A	Del_2q22.1	0.656	1
ELF3	MLL3	0.656	1
FAT1	Amp_19q13.43	0.656	1
FBXW7	SPTAN1	0.656	1
RHOB	Del_2q22.1	0.656	1
4q-Del	Amp_1q23.3	0.656	1
Amp_1p34.2	Amp_7p11.2	0.656	1
Del_13q14.2	Del_Xp11.3	0.656	1
CREBBP	Amp_3q26.33	0.657	1
MBD1	TSC1	0.657	1
TSC1	Del_Xq21.33	0.657	1
ZFP36L1	Del_2q34	0.657	1
Amp_7p21.1	Amp_11q13.3	0.657	1
Amp_11q13.3	Del_6q27	0.657	1
ARID1A	Del_6p25.3	0.658	1
ASXL2	ZBTB7B	0.658	1
ASXL2	Amp_6q21	0.658	1
CNOT1	Amp_4p16.3	0.658	1
FAM47C	Amp_4p16.3	0.658	1
HES1	Amp_17q12	0.658	1
PARD3	Del_8p21.3	0.658	1
PSIP1	15q-Del	0.658	1
RBM10	Amp_4p16.3	0.658	1
Amp_1p34.2	Del_2q37.1	0.658	1
Amp_6q21	Amp_17q12	0.658	1
ATM	Amp_19q12	0.659	1
CDKN2A	Amp_5p15.33	0.659	1
CSMD3	RPTN	0.659	1
CSMD3	Del_7q36.3	0.659	1
DNAH6	Amp_22q12.2	0.659	1
FGFR3	Del_7q36.3	0.659	1
RHOB	Amp_5p15.33	0.659	1
RPTN	STAG2	0.659	1
RPTN	Del_16p13.3	0.659	1
STAG2	Amp_1q21.3	0.659	1
STAG2	Amp_4q13.3	0.659	1
STAG2	Del_7q36.3	0.659	1
TXNIP	ZFP36L1	0.659	1
TXNIP	Amp_22q12.2	0.659	1
CREBBP	RHOA	0.66	1
CREBBP	SHANK1	0.66	1
CSMD3	ERCC2	0.66	1
PTEN	8q-Amp	0.66	1
RB1	Amp_3q26.33	0.66	1
ZFP36L1	Amp_19q13.43	0.66	1
16p-Del	Del_9p23	0.66	1
5p-Amp	Del_11q25	0.661	1
IDH1	Amp_7p11.2	0.662	1
NFE2L2	Amp_8q22.3	0.662	1
20q-Amp	Del_2q34	0.662	1
Amp_22q12.2	Del_9p21.3	0.662	1
ARID1A	KRAS	0.663	1
ATM	HRAS	0.663	1
C3orf70	20q-Amp	0.663	1
CDKN1A	Del_2q22.1	0.663	1
CNOT1	EP300	0.663	1
CNOT1	11p-Del	0.663	1
CNOT1	17p-Del	0.663	1
CSMD3	NRAS	0.663	1
CSMD3	NUDT11	0.663	1
CUL1	20q-Amp	0.663	1
DNAH6	Del_4q34.2	0.663	1
EP300	FAM47C	0.663	1
FAM47C	17p-Del	0.663	1
FGFR3	HLA-A	0.663	1
HLA-A	STAG2	0.663	1
KDM6A	Amp_20q11.21	0.663	1
KRAS	Amp_16p13.2	0.663	1
NRAS	Del_16p13.3	0.663	1
NUDT11	Del_16p13.3	0.663	1
PKHD1	RUNX1	0.663	1
PKHD1	Amp_1q21.3	0.663	1
PKHD1	Del_Xp11.3	0.663	1
RAI1	11p-Del	0.663	1
RAI1	17p-Del	0.663	1
RB1	Del_18q23	0.663	1
RBM10	17p-Del	0.663	1
RUNX1	Amp_16p13.2	0.663	1
ZBTB7B	Del_11p15.5	0.663	1
20q-Amp	3p-Amp	0.663	1
8q-Amp	9p-Del	0.663	1
11q-Del	Amp_8p11.21	0.663	1
18q-Del	Amp_7p11.2	0.663	1
5q-Del	Del_2q22.1	0.663	1
Amp_6q21	Del_11p15.5	0.663	1
Del_2q22.1	Del_19p13.3	0.663	1
CDKN1A	EP300	0.664	1
CNOT1	TP53	0.664	1
CNOT1	Amp_6p22.3	0.664	1
EP300	11q-Del	0.664	1
EP300	5q-Del	0.664	1
MLL2	19q-Amp	0.664	1
MLL2	Amp_4q13.3	0.664	1
NF1	Del_6p25.3	0.664	1
RB1	Del_1q32.1	0.664	1
RBM10	TP53	0.664	1
RPTN	14q-Del	0.664	1
14q-Del	Amp_4q13.3	0.664	1
4p-Del	Amp_4q13.3	0.664	1
Amp_13q22.1	Del_9p23	0.664	1
ARID1A	18q-Del	0.665	1
ARID1B	STAG2	0.665	1
ARID1B	Amp_8p11.23	0.665	1
CDKN2A	TSC1	0.665	1
FBXW7	FOXQ1	0.665	1
FBXW7	Del_1p36.11	0.665	1
THRAP3	Amp_1p34.2	0.665	1
18q-Del	Amp_5p15.33	0.665	1
4q-Del	Amp_8p11.23	0.665	1
CDKN1A	Del_4q22.1	0.666	1
CUL1	Amp_11q22.2	0.666	1
HES1	Del_8p21.3	0.666	1
KDM6A	19p-Del	0.666	1
NFE2L2	3p-Amp	0.666	1
PARD3	Del_14q24.1	0.666	1
3p-Amp	16p-Del	0.666	1
Amp_4p16.3	Del_8p23.3	0.666	1
Amp_6q21	Del_8p21.3	0.666	1
ZNF185	Amp_3p25.2	0.667	1
DNAH6	Amp_20q11.21	0.668	1
ELF3	TP53	0.668	1
ELF3	Amp_1q23.3	0.668	1
ERBB2	4p-Del	0.668	1
ERBB3	FAM47C	0.668	1
FAT1	SCARF2	0.668	1
MLL3	Amp_20q11.21	0.668	1
SCARF2	20q-Amp	0.668	1
15q-Del	Del_6p25.3	0.668	1
17p-Del	Amp_8q22.3	0.668	1
4p-Del	Amp_19q12	0.668	1
Del_9p21.3	Del_19p13.3	0.668	1
ASXL2	RXRA	0.669	1
ASXL2	Amp_11q22.2	0.669	1
FAT1	MLL	0.669	1
GNA13	Amp_19q13.43	0.669	1
KIAA1267	Amp_11q13.3	0.669	1
MBD1	Amp_19q13.43	0.669	1
RXRA	Amp_3q26.33	0.669	1
RXRA	Amp_17q12	0.669	1
RXRA	Del_10q23.31	0.669	1
TMCO4	Amp_19q13.43	0.669	1
TSC1	Del_5q12.1	0.669	1
3q-Amp	Amp_10p14	0.669	1
16p-Del	Amp_3q26.33	0.669	1
Amp_11q22.2	Amp_17q12	0.669	1
Amp_11q22.2	Del_10q23.31	0.669	1
Amp_19q13.43	Del_Xq21.33	0.669	1
Del_11q23.3	Del_16q23.1	0.669	1
CDKN2A	Del_11q23.3	0.67	1
FOXA1	11p-Del	0.67	1
PKHD1	Del_22q13.32	0.67	1
PTEN	17p-Del	0.67	1
RHOB	Del_11q23.3	0.67	1
SPTAN1	Del_8p21.3	0.67	1
1q-Amp	11p-Del	0.67	1
CREBBP	Amp_6p22.3	0.671	1
MLL2	Amp_6p22.3	0.671	1
SF1	Del_9p21.3	0.671	1
ZBTB7B	Amp_3p25.2	0.671	1
Amp_6p22.3	Del_11q25	0.671	1
CSMD3	Amp_17q23.3	0.672	1
ERBB2	RHOA	0.672	1
FGFR3	Del_3p14.2	0.672	1
PLCXD3	8p-Del	0.672	1
RHOA	7p-Amp	0.672	1
SHANK1	7p-Amp	0.672	1
ARID1A	Del_12p13.1	0.673	1
CDKN2A	DNAH6	0.674	1
CDKN2A	HRAS	0.674	1
CREBBP	Del_3p14.2	0.674	1
ELF3	Amp_7p21.1	0.674	1
ERBB2	Del_9p23	0.674	1
FGFR3	PKHD1	0.674	1
HRAS	Amp_11q13.3	0.674	1
PKHD1	Del_16p13.3	0.674	1
RHOB	TXNIP	0.674	1
RUNX1	8p-Del	0.674	1
8p-Del	Del_Xp11.3	0.674	1
Amp_17q23.3	Del_11q25	0.674	1
ARID1A	5q-Del	0.675	1
C3orf70	Del_2q34	0.675	1
CUL1	Del_2q34	0.675	1
KRAS	3q-Amp	0.675	1
KRAS	10q-Del	0.675	1
PARD3	Amp_4p16.3	0.675	1
PIK3CA	7q-Amp	0.675	1
RUNX1	10q-Del	0.675	1
CDKN1A	Amp_22q12.2	0.676	1
EP300	STAG2	0.676	1
PIK3CA	Del_7q36.3	0.676	1
SCARF2	Del_2q34	0.676	1
ZFP36L1	11q-Del	0.676	1
ZFP36L1	5q-Del	0.676	1
17p-Del	Amp_8p11.23	0.676	1
5q-Del	Amp_22q12.2	0.676	1
DNAH6	Amp_6p22.3	0.677	1
FAM47C	PSIP1	0.677	1
FBXW7	Del_18q23	0.677	1
RBM10	7q-Amp	0.677	1
8q-Amp	Amp_1p34.2	0.677	1
CTNNB1	NF1	0.678	1
ELF3	Amp_4p16.3	0.678	1
FOXA1	NF1	0.678	1
FOXQ1	NF1	0.678	1
NF1	1q-Amp	0.678	1
CREBBP	Del_13q14.2	0.679	1
ERCC2	Amp_17q23.3	0.679	1
IDH1	Del_3p14.2	0.679	1
ATM	TSC1	0.68	1
CDKN1A	MBD1	0.68	1
CDKN1A	TMCO4	0.68	1
CDKN1A	Del_1q32.1	0.68	1
GNA13	11q-Del	0.68	1
MBD1	Del_19p13.3	0.68	1
17q-Amp	11q-Del	0.68	1
17q-Amp	5q-Del	0.68	1
17q-Amp	Del_19p13.3	0.68	1
5q-Del	Del_1q32.1	0.68	1
Amp_4q13.3	Del_8p21.3	0.68	1
ARID1A	BCL2L1	0.681	1
BCL2L1	Amp_5p15.33	0.681	1
PKHD1	9p-Del	0.681	1
5p-Amp	11p-Del	0.681	1
ARID1A	Del_17p12	0.682	1
C3orf70	TP53	0.682	1
CNOT1	Del_22q13.32	0.682	1
CUL1	ZFP36L1	0.682	1
FOXQ1	Amp_8q22.3	0.682	1
RAI1	20p-Amp	0.682	1
RHOB	Amp_19q13.43	0.682	1
ATM	Del_9p23	0.683	1
C3orf70	Amp_3p25.2	0.683	1
CUL1	Amp_3p25.2	0.683	1
KRAS	Amp_10p14	0.683	1
MLL3	Amp_7p21.1	0.683	1
NF2	Del_22q13.32	0.683	1
RUNX1	Amp_10p14	0.683	1
SF1	Del_22q13.32	0.683	1
ZNF185	Amp_20q11.21	0.683	1
4p-Del	Amp_8p11.21	0.683	1
4p-Del	Del_2q22.1	0.683	1
6q-Del	Amp_6p22.3	0.683	1
CSMD3	Del_10q23.31	0.684	1
CSMD3	Del_14q24.1	0.684	1
FGFR3	Amp_11q13.3	0.684	1
MLL3	RHOA	0.684	1
MLL3	SHANK1	0.684	1
PIK3CA	11q-Del	0.684	1
PIK3CA	5q-Del	0.684	1
RHOB	Del_2q34	0.684	1
STAG2	Del_10q23.31	0.684	1
7p-Amp	Del_17p12	0.684	1
18q-Del	Amp_8p11.23	0.684	1
Amp_8p11.23	Amp_11q13.3	0.684	1
ARID1B	Del_11p15.5	0.685	1
ERCC2	5q-Del	0.685	1
7q-Amp	8p-Del	0.685	1
TXNIP	Amp_1q21.3	0.686	1
Amp_17q12	Del_4q22.1	0.686	1
CREBBP	IDH1	0.687	1
IDH1	Amp_7p21.1	0.687	1
IDH1	Del_11q25	0.687	1
KRAS	TSC1	0.687	1
MLL	Amp_16p13.2	0.687	1
MLL	Amp_20q11.21	0.687	1
PKHD1	Del_16q23.1	0.687	1
RUNX1	TSC1	0.687	1
DNAH6	14q-Del	0.688	1
FBXW7	Del_3p14.2	0.688	1
FOXQ1	5p-Amp	0.688	1
HRAS	4p-Del	0.688	1
RXRA	SHANK1	0.688	1
SHANK1	16p-Del	0.688	1
TXNIP	4p-Del	0.688	1
ZNF185	Amp_6p22.3	0.688	1
17q-Amp	Del_2q37.1	0.688	1
1q-Amp	5p-Amp	0.688	1
Amp_10p14	Del_14q24.1	0.688	1
Del_2q37.1	Del_Xq21.33	0.688	1
HES1	18q-Del	0.689	1
18q-Del	Amp_6q21	0.689	1
KDM6A	Amp_6p22.3	0.69	1
NRAS	8q-Amp	0.69	1
NUDT11	8q-Amp	0.69	1
ARID1B	Del_14q24.1	0.691	1
ASXL2	17q-Amp	0.691	1
ASXL2	Del_Xq21.33	0.691	1
ATM	19p-Del	0.691	1
FAT1	SPTAN1	0.691	1
FBXW7	RPTN	0.691	1
FBXW7	11p-Del	0.691	1
FBXW7	Amp_4q13.3	0.691	1
FOXA1	PKHD1	0.691	1
FOXA1	Amp_16p13.2	0.691	1
FOXQ1	PKHD1	0.691	1
FOXQ1	Amp_16p13.2	0.691	1
KLF5	Del_14q24.1	0.691	1
PKHD1	PTEN	0.691	1
PKHD1	1q-Amp	0.691	1
PKHD1	Del_1p36.11	0.691	1
PTEN	Amp_16p13.2	0.691	1
19q-Amp	Amp_1p34.2	0.691	1
19p-Del	Del_4q34.2	0.691	1
Amp_16p13.2	Del_1p36.11	0.691	1
ARID1A	EP300	0.692	1
ASXL2	ZFP36L1	0.692	1
KLF5	Amp_4p16.3	0.692	1
MLL	SF1	0.692	1
MLL3	RB1	0.692	1
MLL3	9p-Del	0.692	1
NF2	Amp_13q22.1	0.692	1
NF2	Del_6p25.3	0.692	1
SF1	Amp_13q22.1	0.692	1
SF1	Del_6p25.3	0.692	1
4q-Del	Amp_4p16.3	0.692	1
CTNNB1	Del_17p12	0.693	1
1q-Amp	Del_17p12	0.693	1
Amp_4p16.3	Del_8p21.3	0.693	1
EP300	FAT1	0.694	1
EP300	20q-Amp	0.694	1
ERBB3	PARD3	0.694	1
FAT1	11p-Del	0.694	1
PARD3	PSIP1	0.694	1
PSIP1	Del_12p13.1	0.694	1
5p-Amp	Del_19p13.3	0.694	1
Amp_6q21	Amp_20q11.21	0.694	1
ASXL2	MLL3	0.695	1
CNOT1	FAM47C	0.695	1
CNOT1	RAI1	0.695	1
CNOT1	Amp_12q15	0.695	1
CNOT1	Del_16q23.1	0.695	1
CSMD3	DNAH6	0.695	1
CSMD3	RXRA	0.695	1
CSMD3	Amp_7p21.1	0.695	1
FAM47C	MLL	0.695	1
FAM47C	Amp_12q15	0.695	1
FAM47C	Amp_13q22.1	0.695	1
FGFR3	RXRA	0.695	1
FGFR3	TXNIP	0.695	1
FGFR3	Del_6q27	0.695	1
HRAS	Amp_8p11.23	0.695	1
HRAS	Del_16p13.3	0.695	1
IDH1	Amp_19q12	0.695	1
KIAA1267	STAG2	0.695	1
MLL	RAI1	0.695	1
MLL	RBM10	0.695	1
RAI1	Amp_12q15	0.695	1
RAI1	Amp_13q22.1	0.695	1
RBM10	Amp_13q22.1	0.695	1
SHANK1	20q-Amp	0.695	1
STAG2	16p-Del	0.695	1
STAG2	22q-Del	0.695	1
STAG2	Amp_7p21.1	0.695	1
TXNIP	Amp_8p11.23	0.695	1
Amp_8p11.23	Amp_11q22.2	0.695	1
Amp_11q22.2	Del_16p13.3	0.695	1
CUL1	RHOB	0.696	1
ERCC2	Del_11q25	0.696	1
KDM6A	3p-Amp	0.696	1
UNC93B1	Amp_8q22.3	0.696	1
CNNM4	Del_9p23	0.697	1
EP300	HLA-A	0.697	1
EP300	NRAS	0.697	1
EP300	NUDT11	0.697	1
EP300	UNC93B1	0.697	1
ERBB3	Amp_11q13.3	0.697	1
HLA-A	11p-Del	0.697	1
NRAS	17p-Del	0.697	1
NUDT11	17p-Del	0.697	1
PTEN	Del_13q14.2	0.697	1
SF1	Del_9p23	0.697	1
UNC93B1	11p-Del	0.697	1
20q-Amp	4p-Del	0.697	1
3p-Amp	Del_4q34.2	0.697	1
4p-Del	Del_11q23.3	0.697	1
Del_1p36.11	Del_13q14.2	0.697	1
ARID1A	4p-Del	0.698	1
CDKN1A	CDKN2A	0.698	1
CDKN2A	11q-Del	0.698	1
CDKN2A	Del_19p13.3	0.698	1
PIK3CA	Del_11q23.3	0.698	1
RHOB	5q-Del	0.698	1
RUNX1	Amp_19q13.43	0.698	1
SCARF2	Amp_3q26.33	0.698	1
SCARF2	Del_10q23.31	0.698	1
ZFP36L1	Amp_3q26.33	0.698	1
ZFP36L1	Del_10q23.31	0.698	1
19p-Del	Amp_11q13.3	0.698	1
Amp_11q13.3	Amp_22q12.2	0.698	1
CNNM4	SPTAN1	0.7	1
CSMD3	6q-Del	0.7	1
ERCC2	16p-Del	0.7	1
FGFR3	6q-Del	0.7	1
NF2	SPTAN1	0.7	1
SF1	Amp_7p11.2	0.7	1
STAG2	Del_15q13.1	0.7	1
8q-Amp	9q-Del	0.7	1
Amp_3q26.33	Amp_8p11.21	0.7	1
EP300	Del_13q14.2	0.701	1
GNA13	Del_4q22.1	0.701	1
MLL3	Del_22q13.32	0.701	1
ZBTB7B	Amp_6p22.3	0.701	1
17q-Amp	Del_4q22.1	0.701	1
20p-Amp	5p-Amp	0.701	1
5p-Amp	Del_9p23	0.701	1
ERBB2	Amp_4p16.3	0.702	1
SCARF2	Amp_1q23.3	0.702	1
TSC1	Amp_20q11.21	0.702	1
20p-Amp	Del_4q34.2	0.702	1
ASXL2	Del_11q23.3	0.703	1
CDKN1A	Del_14q24.1	0.703	1
CTNNB1	3q-Amp	0.703	1
CTNNB1	6q-Del	0.703	1
FBXW7	Amp_7p21.1	0.703	1
FOXA1	3q-Amp	0.703	1
RHOA	Amp_22q12.2	0.703	1
THRAP3	3q-Amp	0.703	1
THRAP3	10q-Del	0.703	1
THRAP3	6q-Del	0.703	1
1q-Amp	3q-Amp	0.703	1
1q-Amp	Del_15q13.1	0.703	1
3q-Amp	Del_1p36.11	0.703	1
ASXL2	ERCC2	0.704	1
MLL	Del_22q13.32	0.705	1
NF1	Del_18q23	0.705	1
7p-Amp	Del_8p21.3	0.705	1
CTNNB1	Del_5q12.1	0.706	1
ELF3	15q-Del	0.706	1
FAT1	9p-Del	0.706	1
FOXQ1	9q-Del	0.706	1
PTEN	9q-Del	0.706	1
THRAP3	9q-Del	0.706	1
1q-Amp	Del_5q12.1	0.706	1
C3orf70	Amp_3q26.33	0.707	1
CSMD3	9p-Del	0.707	1
ZFP36L1	Del_4q22.1	0.707	1
3p-Amp	Del_10q23.31	0.707	1
CNOT1	Amp_7p11.2	0.708	1
CNOT1	Del_5q12.1	0.708	1
EP300	Amp_4q13.3	0.708	1
ERBB3	9q-Del	0.708	1
KIAA1267	Amp_4p16.3	0.708	1
KRAS	RB1	0.708	1
RAI1	SPTAN1	0.708	1
RAI1	Amp_7p11.2	0.708	1
RPTN	11p-Del	0.708	1
11p-Del	Del_7q36.3	0.708	1
Amp_4p16.3	Amp_11q22.2	0.708	1
ARID1A	Amp_17q12	0.709	1
CDKN1A	RUNX1	0.709	1
CDKN1A	Del_13q14.2	0.709	1
FBXW7	3q-Amp	0.709	1
FBXW7	6q-Del	0.709	1
FBXW7	Amp_3p25.2	0.709	1
KDM6A	KRAS	0.709	1
KRAS	5q-Del	0.709	1
RUNX1	11q-Del	0.709	1
RUNX1	5q-Del	0.709	1
17q-Amp	Del_8p23.3	0.709	1
3q-Amp	Amp_1p34.2	0.709	1
5p-Amp	Amp_1q21.3	0.709	1
10q-Del	Amp_1p34.2	0.709	1
11q-Del	Del_Xp11.3	0.709	1
5q-Del	Del_Xp11.3	0.709	1
6q-Del	Amp_12q15	0.709	1
Amp_7p11.2	Del_2q34	0.709	1
Del_19p13.3	Del_Xp11.3	0.709	1
NF1	Amp_16p13.2	0.71	1
RB1	6q-Del	0.71	1
UNC93B1	5p-Amp	0.71	1
14q-Del	Amp_10p14	0.71	1
4p-Del	Amp_10p14	0.71	1
ARID1B	7q-Amp	0.711	1
ARID1B	15q-Del	0.711	1
ATM	CDKN2A	0.711	1
C3orf70	Amp_20q11.21	0.711	1
CUL1	Amp_20q11.21	0.711	1
DNAH6	Del_8p23.3	0.711	1
ERCC2	TMCO4	0.711	1
FAT1	IDH1	0.711	1
FGFR3	Del_8p21.3	0.711	1
IDH1	Del_11q23.3	0.711	1
KLF5	PSIP1	0.711	1
MLL2	Amp_17q23.3	0.711	1
MLL2	Del_3p14.2	0.711	1
PSIP1	4q-Del	0.711	1
TXNIP	Del_8p23.3	0.711	1
3p-Amp	14q-Del	0.711	1
ARID1A	Del_2q22.1	0.712	1
CSMD3	19p-Del	0.712	1
FAM47C	PARD3	0.712	1
PARD3	RBM10	0.712	1
PIK3CA	ZNF185	0.712	1
RAI1	Del_12p13.1	0.712	1
SCARF2	STAG2	0.712	1
SCARF2	Amp_8p11.23	0.712	1
SCARF2	Del_16p13.3	0.712	1
CREBBP	Amp_19q12	0.713	1
PARD3	Amp_1q21.3	0.713	1
PIK3CA	Del_5q12.1	0.713	1
SCARF2	Del_8p23.3	0.713	1
Amp_10p14	Del_5q12.1	0.713	1
ARID1A	7p-Amp	0.714	1
ARID1A	4q-Del	0.714	1
CDKN2A	Amp_17q12	0.714	1
FOXA1	TSC1	0.714	1
KLF5	8q-Amp	0.714	1
MLL3	Amp_3q26.33	0.714	1
PTEN	TSC1	0.714	1
RHOB	Amp_17q12	0.714	1
THRAP3	TSC1	0.714	1
TSC1	1q-Amp	0.714	1
FBXW7	HRAS	0.715	1
FOXA1	8p-Del	0.715	1
MLL2	Del_1q32.1	0.715	1
1q-Amp	8p-Del	0.715	1
7q-Amp	Del_8p23.3	0.715	1
ARID1A	FOXQ1	0.716	1
CDKN2A	9p-Del	0.716	1
CTNNB1	Amp_5p15.33	0.716	1
ERBB2	STAG2	0.716	1
ERBB2	Amp_8p11.23	0.716	1
MLL2	5q-Del	0.716	1
NUDT11	Del_13q14.2	0.716	1
PKHD1	19q-Amp	0.716	1
RPTN	Amp_16p13.2	0.716	1
Amp_4q13.3	Amp_16p13.2	0.716	1
Amp_16p13.2	Del_7q36.3	0.716	1
CDKN2A	RHOA	0.717	1
CNNM4	Amp_17q23.3	0.717	1
ELF3	SF1	0.717	1
ERBB2	FBXW7	0.717	1
ERBB3	Amp_19q13.43	0.717	1
HES1	20p-Amp	0.717	1
HES1	Del_22q13.32	0.717	1
RHOB	SHANK1	0.717	1
SF1	Amp_17q23.3	0.717	1
SF1	Del_3p14.2	0.717	1
20p-Amp	Amp_6q21	0.717	1
5p-Amp	Amp_1p34.2	0.717	1
18q-Del	Amp_7p21.1	0.717	1
CREBBP	15q-Del	0.718	1
HRAS	MLL2	0.718	1
MLL2	19p-Del	0.718	1
PSIP1	Amp_7p21.1	0.718	1
7q-Amp	Del_6q27	0.718	1
15q-Del	Amp_7p21.1	0.718	1
ASXL2	Del_2q34	0.719	1
CDKN1A	4p-Del	0.719	1
FAM47C	8p-Del	0.719	1
MLL3	ZFP36L1	0.719	1
ZFP36L1	Del_2q37.1	0.719	1
8q-Amp	8p-Del	0.719	1
Amp_6q21	Amp_8q22.3	0.719	1
ERBB3	Del_9p21.3	0.72	1
KRAS	Amp_17q12	0.72	1
PKHD1	Del_2q37.1	0.72	1
20q-Amp	Amp_3q26.33	0.72	1
18q-Del	Amp_8q22.3	0.72	1
ARID1A	Del_15q13.1	0.721	1
DNAH6	PIK3CA	0.721	1
GNA13	Del_14q24.1	0.721	1
HRAS	PIK3CA	0.721	1
MBD1	Del_14q24.1	0.721	1
MLL	PARD3	0.721	1
MLL3	Del_18q23	0.721	1
TMCO4	18q-Del	0.721	1
17q-Amp	18q-Del	0.721	1
3q-Amp	Amp_5p15.33	0.721	1
18q-Del	Del_Xq21.33	0.721	1
Del_12p13.1	Del_16q23.1	0.721	1
NUDT11	Del_5q12.1	0.722	1
ATM	Amp_13q22.1	0.723	1
FOXQ1	Amp_10p14	0.723	1
1q-Amp	Amp_10p14	0.723	1
Amp_4p16.3	Amp_22q12.2	0.723	1
Amp_7p11.2	Del_22q13.32	0.723	1
ERCC2	Del_18q23	0.724	1
3q-Amp	Amp_7p11.2	0.724	1
Amp_7p11.2	Del_15q13.1	0.724	1
Amp_12q15	Del_6p25.3	0.724	1
Amp_12q15	Del_16q23.1	0.724	1
Del_2q34	Del_9p21.3	0.724	1
ARID1B	17p-Del	0.725	1
CSMD3	TSC1	0.725	1
EP300	7p-Amp	0.725	1
FAT1	Amp_4p16.3	0.725	1
FAT1	Del_4q22.1	0.725	1
STAG2	TSC1	0.725	1
THRAP3	Amp_19q13.43	0.725	1
20q-Amp	Del_4q22.1	0.725	1
7p-Amp	11p-Del	0.725	1
7p-Amp	17p-Del	0.725	1
CNNM4	CREBBP	0.726	1
FAM47C	Del_9p21.3	0.726	1
HES1	MLL	0.726	1
HES1	Amp_13q22.1	0.726	1
KIAA1267	7q-Amp	0.726	1
MLL	ZBTB7B	0.726	1
NF1	Del_11q25	0.726	1
NF2	Amp_7p21.1	0.726	1
NF2	Del_6q27	0.726	1
NFE2L2	7q-Amp	0.726	1
NFE2L2	15q-Del	0.726	1
PSIP1	RXRA	0.726	1
PSIP1	16p-Del	0.726	1
PSIP1	22q-Del	0.726	1
RXRA	7q-Amp	0.726	1
SF1	Del_6q27	0.726	1
ZBTB7B	Amp_13q22.1	0.726	1
ZBTB7B	Del_6p25.3	0.726	1
ZBTB7B	Del_16q23.1	0.726	1
5p-Amp	Del_7q36.3	0.726	1
7q-Amp	16p-Del	0.726	1
15q-Del	Amp_11q22.2	0.726	1
Amp_6q21	Amp_12q15	0.726	1
Amp_6q21	Del_6p25.3	0.726	1
Amp_6q21	Del_16q23.1	0.726	1
ATM	5q-Del	0.727	1
ATM	Del_19p13.3	0.727	1
CDKN1A	Del_4q34.2	0.727	1
ELF3	Amp_8q22.3	0.727	1
HRAS	NF1	0.727	1
7q-Amp	9p-Del	0.727	1
8p-Del	Amp_11q13.3	0.727	1
Amp_12q15	Del_2q37.1	0.727	1
ATM	RHOA	0.728	1
C3orf70	Amp_8p11.23	0.728	1
CSMD3	3p-Amp	0.728	1
CUL1	FGFR3	0.728	1
CUL1	Amp_1q21.3	0.728	1
HLA-A	8p-Del	0.728	1
METTL3	Amp_8p11.23	0.728	1
PLCXD3	Del_11p15.5	0.728	1
RPTN	10q-Del	0.728	1
RPTN	6q-Del	0.728	1
SHANK1	Del_4q34.2	0.728	1
19q-Amp	10q-Del	0.728	1
19q-Amp	6q-Del	0.728	1
3q-Amp	Del_7q36.3	0.728	1
4q-Del	Amp_20q11.21	0.728	1
6q-Del	Amp_4q13.3	0.728	1
CNOT1	7p-Amp	0.729	1
PARD3	Del_12p13.1	0.729	1
RBM10	7p-Amp	0.729	1
RBM10	4q-Del	0.729	1
SCARF2	Del_9p21.3	0.729	1
TSC1	Amp_12q15	0.729	1
TSC1	Del_6p25.3	0.729	1
TSC1	Del_16q23.1	0.729	1
5p-Amp	Amp_1q23.3	0.729	1
5p-Amp	Del_11q23.3	0.729	1
19p-Del	Del_9p21.3	0.729	1
CSMD3	ERBB3	0.73	1
ERBB2	15q-Del	0.73	1
ERBB3	STAG2	0.73	1
MLL2	16p-Del	0.73	1
Amp_1p34.2	Del_13q14.2	0.73	1
MLL2	Amp_3q26.33	0.731	1
PKHD1	Del_18q23	0.731	1
SHANK1	14q-Del	0.731	1
SHANK1	4p-Del	0.731	1
7p-Amp	Del_22q13.32	0.731	1
Amp_16p13.2	Del_18q23	0.731	1
ARID1A	Amp_3q26.33	0.732	1
KRAS	MLL3	0.732	1
MLL3	RUNX1	0.732	1
RAI1	Amp_17q23.3	0.732	1
RAI1	Del_3p14.2	0.732	1
ELF3	Amp_16p13.2	0.733	1
IDH1	Del_4q34.2	0.733	1
PARD3	Amp_8q22.3	0.733	1
TXNIP	8q-Amp	0.733	1
Amp_7p11.2	Del_12p13.1	0.733	1
Amp_16p13.2	Del_3p14.2	0.733	1
Amp_19q13.43	Del_22q13.32	0.733	1
CNOT1	Del_9p23	0.734	1
ERBB2	SF1	0.734	1
FAM47C	Del_9p23	0.734	1
NRAS	Amp_10p14	0.734	1
NUDT11	Amp_10p14	0.734	1
RHOB	Del_9p23	0.734	1
ARID1A	Amp_4p16.3	0.735	1
HES1	Amp_7p11.2	0.735	1
HRAS	Del_9p21.3	0.735	1
RPTN	Del_13q14.2	0.735	1
19q-Amp	Del_13q14.2	0.735	1
Amp_4p16.3	Del_2q34	0.735	1
ASXL2	Amp_8q22.3	0.736	1
CDKN1A	CTNNB1	0.736	1
CDKN1A	FOXA1	0.736	1
CDKN1A	FOXQ1	0.736	1
CNNM4	Del_17p12	0.736	1
CREBBP	Del_17p12	0.736	1
CTNNB1	11q-Del	0.736	1
PIK3CA	Amp_6q21	0.736	1
PTEN	5q-Del	0.736	1
PTEN	Del_19p13.3	0.736	1
SF1	Del_17p12	0.736	1
THRAP3	5q-Del	0.736	1
THRAP3	Del_19p13.3	0.736	1
ZFP36L1	18q-Del	0.736	1
1q-Amp	11q-Del	0.736	1
1q-Amp	5q-Del	0.736	1
Amp_17q12	Del_11p15.5	0.736	1
CDKN2A	Amp_4p16.3	0.737	1
ERBB3	5q-Del	0.737	1
FBXW7	3p-Amp	0.737	1
HRAS	Del_9p23	0.737	1
3p-Amp	Amp_1p34.2	0.737	1
ARID1B	Amp_6p22.3	0.738	1
BCL2L1	Del_8p23.3	0.738	1
RHOA	Amp_11q13.3	0.738	1
4q-Del	Amp_6p22.3	0.738	1
ELF3	ERBB3	0.739	1
ERBB3	Del_3p14.2	0.739	1
ERCC2	17p-Del	0.739	1
KDM6A	Amp_7p21.1	0.739	1
SCARF2	8q-Amp	0.739	1
TP53	18q-Del	0.739	1
TSC1	19q-Amp	0.739	1
TSC1	Amp_4q13.3	0.739	1
8q-Amp	19p-Del	0.739	1
Amp_11q13.3	Amp_12q15	0.739	1
Amp_11q13.3	Amp_13q22.1	0.739	1
ERBB3	17q-Amp	0.74	1
ERCC2	Del_Xp11.3	0.74	1
IDH1	Amp_3q26.33	0.74	1
IDH1	Del_10q23.31	0.74	1
PKHD1	TXNIP	0.74	1
TXNIP	Amp_16p13.2	0.74	1
9p-Del	Amp_8q22.3	0.74	1
Amp_6p22.3	Del_18q23	0.74	1
CNNM4	Amp_8p11.21	0.741	1
GNA13	Amp_20q11.21	0.741	1
KDM6A	Amp_12q15	0.741	1
MBD1	Amp_20q11.21	0.741	1
PSIP1	Amp_8p11.21	0.741	1
PSIP1	Del_2q22.1	0.741	1
ZFP36L1	7q-Amp	0.741	1
7q-Amp	Del_2q22.1	0.741	1
DNAH6	EP300	0.742	1
FAM47C	Amp_1q23.3	0.742	1
NFE2L2	8q-Amp	0.742	1
NFE2L2	Del_18q23	0.742	1
TXNIP	17p-Del	0.742	1
8q-Amp	22q-Del	0.742	1
5q-Del	Amp_3q26.33	0.742	1
Amp_7p11.2	Amp_12q15	0.742	1
RPTN	Del_5q12.1	0.743	1
Amp_8p11.21	Del_9p21.3	0.743	1
ARID1B	Amp_12q15	0.744	1
ARID1B	Amp_13q22.1	0.744	1
C3orf70	Amp_1q23.3	0.744	1
CNOT1	NFE2L2	0.744	1
CNOT1	Amp_7p21.1	0.744	1
CNOT1	Amp_11q22.2	0.744	1
CREBBP	RBM10	0.744	1
FAM47C	KIAA1267	0.744	1
FAM47C	16p-Del	0.744	1
FAM47C	22q-Del	0.744	1
FAM47C	Amp_11q22.2	0.744	1
FAM47C	Del_6q27	0.744	1
FAM47C	Del_11q25	0.744	1
IDH1	TP53	0.744	1
KIAA1267	RBM10	0.744	1
NFE2L2	RAI1	0.744	1
PKHD1	6q-Del	0.744	1
RAI1	16p-Del	0.744	1
RAI1	22q-Del	0.744	1
RAI1	Del_11q25	0.744	1
RBM10	Amp_11q22.2	0.744	1
3q-Amp	Amp_16p13.2	0.744	1
4q-Del	Amp_12q15	0.744	1
Amp_1p34.2	Amp_20q11.21	0.744	1
ARID1B	Del_12p13.1	0.745	1
FBXW7	20q-Amp	0.745	1
KLF5	Del_12p13.1	0.745	1
PARD3	4q-Del	0.745	1
SCARF2	17p-Del	0.745	1
20q-Amp	Amp_1p34.2	0.745	1
Amp_1p34.2	Del_11q23.3	0.745	1
PIK3CA	Del_11p15.5	0.746	1
TP53	15q-Del	0.746	1
Amp_1p34.2	Del_9p21.3	0.746	1
ARID1B	5p-Amp	0.747	1
ASXL2	CTNNB1	0.747	1
ASXL2	FOXA1	0.747	1
ASXL2	FOXQ1	0.747	1
ASXL2	PTEN	0.747	1
FOXQ1	Amp_17q12	0.747	1
PTEN	Amp_17q12	0.747	1
8q-Amp	18q-Del	0.747	1
4q-Del	Amp_1q21.3	0.747	1
Amp_8q22.3	Del_11q23.3	0.747	1
Amp_16p13.2	Del_11q25	0.747	1
Amp_17q12	Del_1p36.11	0.747	1
Amp_17q12	Del_5q12.1	0.747	1
FOXA1	RB1	0.748	1
FOXQ1	9p-Del	0.748	1
RB1	THRAP3	0.748	1
TMCO4	Amp_6p22.3	0.748	1
ZNF185	Del_17p12	0.748	1
Amp_6p22.3	Del_Xq21.33	0.748	1
Amp_17q23.3	Del_2q34	0.748	1
BCL2L1	Del_8p21.3	0.749	1
CNNM4	FAT1	0.749	1
CSMD3	RHOB	0.749	1
CUL1	NF1	0.749	1
FAT1	Amp_7p21.1	0.749	1
HES1	Del_9p23	0.749	1
17q-Amp	20p-Amp	0.749	1
17q-Amp	Del_22q13.32	0.749	1
20p-Amp	Del_Xq21.33	0.749	1
Amp_6q21	Del_9p23	0.749	1
Amp_12q15	Del_17p12	0.749	1
CSMD3	20p-Amp	0.75	1
RPTN	Amp_19q13.43	0.75	1
RUNX1	Del_14q24.1	0.75	1
STAG2	20p-Amp	0.75	1
STAG2	Del_22q13.32	0.75	1
11q-Del	Amp_10p14	0.75	1
5q-Del	Amp_10p14	0.75	1
9p-Del	Del_13q14.2	0.75	1
Del_14q24.1	Del_Xp11.3	0.75	1
ELF3	HES1	0.751	1
ELF3	Amp_6q21	0.751	1
FGFR3	Amp_20q11.21	0.751	1
HES1	Amp_17q23.3	0.751	1
HRAS	3q-Amp	0.751	1
MLL2	Del_2q34	0.751	1
MLL3	Amp_7p11.2	0.751	1
NRAS	RB1	0.751	1
NRAS	9p-Del	0.751	1
NUDT11	RB1	0.751	1
TXNIP	10q-Del	0.751	1
TXNIP	Del_15q13.1	0.751	1
ZFP36L1	Del_11p15.5	0.751	1
Amp_6q21	Amp_17q23.3	0.751	1
Amp_6q21	Del_3p14.2	0.751	1
Amp_7p11.2	Del_2q37.1	0.751	1
Amp_11q22.2	Del_9p21.3	0.751	1
ARID1A	KIAA1267	0.752	1
CDKN1A	Del_22q13.32	0.752	1
KIAA1267	Amp_5p15.33	0.752	1
8p-Del	Amp_4q13.3	0.752	1
EP300	Amp_11q22.2	0.753	1
KIAA1267	17p-Del	0.753	1
NF1	Amp_8p11.21	0.753	1
NFE2L2	11p-Del	0.753	1
PLCXD3	Amp_6p22.3	0.753	1
RB1	Amp_17q23.3	0.753	1
SPTAN1	Del_8p23.3	0.753	1
16p-Del	17p-Del	0.753	1
ARID1A	NF2	0.754	1
ARID1A	SF1	0.754	1
ELF3	10q-Del	0.754	1
FAT1	Del_2q37.1	0.754	1
FBXW7	8p-Del	0.754	1
IDH1	Amp_8p11.23	0.754	1
IDH1	Del_16p13.3	0.754	1
KIAA1267	20p-Amp	0.754	1
KIAA1267	Del_22q13.32	0.754	1
KRAS	Del_11p15.5	0.754	1
ZBTB7B	Del_9p21.3	0.754	1
9q-Del	Amp_13q22.1	0.754	1
Amp_6q21	Del_9p21.3	0.754	1
ASXL2	ERBB3	0.755	1
CDKN2A	PSIP1	0.755	1
CDKN2A	15q-Del	0.755	1
CSMD3	20q-Amp	0.755	1
ERBB2	FAM47C	0.755	1
ERBB3	Amp_17q12	0.755	1
MLL3	7q-Amp	0.755	1
RHOB	15q-Del	0.755	1
8q-Amp	10q-Del	0.755	1
ATM	11p-Del	0.756	1
CDKN1A	Amp_1p34.2	0.756	1
CDKN2A	18q-Del	0.756	1
CDKN2A	Del_14q24.1	0.756	1
FBXW7	5q-Del	0.756	1
RHOB	Del_14q24.1	0.756	1
CTNNB1	Del_4q22.1	0.757	1
ELF3	PARD3	0.757	1
FGFR3	RHOA	0.757	1
FOXQ1	Del_4q22.1	0.757	1
GNA13	Amp_13q22.1	0.757	1
MBD1	Amp_12q15	0.757	1
MLL	TMCO4	0.757	1
MLL	17q-Amp	0.757	1
PARD3	Del_3p14.2	0.757	1
PTEN	Del_4q22.1	0.757	1
RB1	Del_17p12	0.757	1
SHANK1	Amp_8p11.23	0.757	1
TMCO4	Amp_12q15	0.757	1
17q-Amp	Amp_13q22.1	0.757	1
5p-Amp	19p-Del	0.757	1
11p-Del	Amp_10p14	0.757	1
17p-Del	Amp_10p14	0.757	1
Amp_12q15	Del_1q32.1	0.757	1
Del_1q32.1	Del_6p25.3	0.757	1
ARID1B	Del_13q14.2	0.758	1
FBXW7	Del_2q34	0.758	1
PLCXD3	Amp_1q21.3	0.758	1
Amp_1p34.2	Del_2q34	0.758	1
CNOT1	9p-Del	0.759	1
CREBBP	ZBTB7B	0.759	1
FAM47C	9p-Del	0.759	1
FAM47C	Amp_22q12.2	0.759	1
FAM47C	Del_8p23.3	0.759	1
HES1	Del_6q27	0.759	1
KDM6A	1q-Amp	0.759	1
KDM6A	Del_1p36.11	0.759	1
PARD3	Amp_10p14	0.759	1
RAI1	RB1	0.759	1
RB1	RBM10	0.759	1
RBM10	ZFP36L1	0.759	1
RBM10	Amp_22q12.2	0.759	1
ZBTB7B	Amp_7p21.1	0.759	1
ZFP36L1	Del_17p12	0.759	1
PKHD1	TSC1	0.76	1
5p-Amp	9q-Del	0.76	1
ARID1B	KLF5	0.761	1
ARID1B	7p-Amp	0.761	1
ARID1B	4q-Del	0.761	1
C3orf70	PKHD1	0.761	1
C3orf70	Amp_16p13.2	0.761	1
CDKN1A	Del_7q36.3	0.761	1
CUL1	Amp_16p13.2	0.761	1
KDM6A	Del_13q14.2	0.761	1
KLF5	7p-Amp	0.761	1
METTL3	PKHD1	0.761	1
NFE2L2	PARD3	0.761	1
NFE2L2	Del_12p13.1	0.761	1
PARD3	RXRA	0.761	1
PARD3	16p-Del	0.761	1
PARD3	22q-Del	0.761	1
PKHD1	3p-Amp	0.761	1
PKHD1	Amp_19q12	0.761	1
RPTN	11q-Del	0.761	1
RPTN	5q-Del	0.761	1
19q-Amp	11q-Del	0.761	1
19q-Amp	5q-Del	0.761	1
16p-Del	Del_12p13.1	0.761	1
5q-Del	Amp_4q13.3	0.761	1
8p-Del	Amp_17q12	0.761	1
Amp_3p25.2	Del_Xp11.3	0.761	1
Amp_4q13.3	Del_19p13.3	0.761	1
Amp_16p13.2	Amp_19q12	0.761	1
FAT1	9q-Del	0.762	1
TSC1	TXNIP	0.762	1
7q-Amp	Del_2q34	0.762	1
11p-Del	Amp_6p22.3	0.762	1
Amp_5p15.33	Del_7q36.3	0.762	1
ASXL2	Amp_11q13.3	0.763	1
Amp_3q26.33	Amp_17q12	0.763	1
TP53	Del_11q23.3	0.764	1
CNOT1	Amp_8p11.21	0.766	1
ERCC2	1q-Amp	0.766	1
KIAA1267	Del_6p25.3	0.766	1
MBD1	SPTAN1	0.766	1
MBD1	Amp_7p11.2	0.766	1
MLL	RXRA	0.766	1
MLL	16p-Del	0.766	1
MLL2	3p-Amp	0.766	1
NFE2L2	Amp_12q15	0.766	1
NFE2L2	Del_16q23.1	0.766	1
PIK3CA	Amp_3p25.2	0.766	1
RAI1	Amp_8p11.21	0.766	1
RBM10	Amp_8p11.21	0.766	1
RBM10	Del_2q22.1	0.766	1
RXRA	Amp_12q15	0.766	1
RXRA	Amp_13q22.1	0.766	1
SPTAN1	17q-Amp	0.766	1
SPTAN1	Del_1q32.1	0.766	1
TMCO4	Amp_7p11.2	0.766	1
Amp_11q22.2	Del_16q23.1	0.766	1
ERBB2	ZBTB7B	0.767	1
ERBB2	Amp_6q21	0.767	1
HLA-A	Del_2q37.1	0.767	1
MLL3	NRAS	0.767	1
MLL3	NUDT11	0.767	1
NF1	9q-Del	0.767	1
NUDT11	Del_2q37.1	0.767	1
UNC93B1	Del_2q37.1	0.767	1
10q-Del	Del_9p23	0.767	1
5q-Del	Amp_12q15	0.767	1
Amp_19q12	Del_11q23.3	0.767	1
CREBBP	Del_12p13.1	0.768	1
ERBB3	KRAS	0.768	1
ERBB3	RUNX1	0.768	1
TXNIP	Del_13q14.2	0.768	1
Del_6q27	Del_12p13.1	0.768	1
CDKN1A	CSMD3	0.769	1
CDKN1A	STAG2	0.769	1
SCARF2	9q-Del	0.769	1
SCARF2	Del_5q12.1	0.769	1
ZFP36L1	Del_18q23	0.769	1
19p-Del	Amp_8q22.3	0.769	1
ASXL2	20p-Amp	0.77	1
ATM	SF1	0.77	1
CNNM4	Del_4q34.2	0.77	1
CSMD3	MLL	0.77	1
CSMD3	Amp_12q15	0.77	1
CSMD3	Del_16q23.1	0.77	1
CTNNB1	Del_2q37.1	0.77	1
FGFR3	Del_16q23.1	0.77	1
FOXQ1	MLL3	0.77	1
MLL	Del_16p13.3	0.77	1
SF1	Del_4q34.2	0.77	1
20p-Amp	Amp_17q12	0.77	1
ASXL2	RPTN	0.771	1
ASXL2	Amp_4q13.3	0.771	1
ATM	RB1	0.771	1
ATM	9p-Del	0.771	1
EP300	Amp_8q22.3	0.771	1
FBXW7	Amp_17q12	0.771	1
NRAS	TP53	0.771	1
PIK3CA	Amp_12q15	0.771	1
PIK3CA	Amp_13q22.1	0.771	1
19q-Amp	Amp_17q12	0.771	1
11q-Del	Amp_6p22.3	0.771	1
Amp_17q12	Del_7q36.3	0.771	1
C3orf70	3q-Amp	0.772	1
C3orf70	6q-Del	0.772	1
C3orf70	Del_15q13.1	0.772	1
CUL1	6q-Del	0.772	1
ERBB3	Del_4q22.1	0.772	1
PIK3CA	Amp_19q12	0.772	1
3p-Amp	10q-Del	0.772	1
3p-Amp	Del_15q13.1	0.772	1
C3orf70	11p-Del	0.773	1
CDKN2A	RAI1	0.773	1
CDKN2A	RBM10	0.773	1
CNOT1	RHOB	0.773	1
CREBBP	20p-Amp	0.773	1
FAM47C	RHOB	0.773	1
FGFR3	Del_8p23.3	0.773	1
HRAS	Amp_19q13.43	0.773	1
MLL3	18q-Del	0.773	1
TXNIP	Amp_19q13.43	0.773	1
20p-Amp	Del_11q25	0.773	1
ARID1A	PSIP1	0.774	1
KIAA1267	5p-Amp	0.774	1
NF1	11q-Del	0.774	1
NF1	5q-Del	0.774	1
PKHD1	Amp_8p11.21	0.774	1
ZBTB7B	Del_2q22.1	0.774	1
ZFP36L1	Del_22q13.32	0.774	1
20p-Amp	Amp_22q12.2	0.774	1
5p-Amp	22q-Del	0.774	1
ATM	Del_10q23.31	0.775	1
CTNNB1	Del_14q24.1	0.775	1
ELF3	Del_6p25.3	0.775	1
FOXA1	18q-Del	0.775	1
FOXQ1	Del_14q24.1	0.775	1
MLL	Del_3p14.2	0.775	1
PTEN	Del_14q24.1	0.775	1
RB1	Del_6q27	0.775	1
SCARF2	8p-Del	0.775	1
THRAP3	18q-Del	0.775	1
ARID1B	KIAA1267	0.776	1
ARID1B	NFE2L2	0.776	1
ARID1B	Amp_11q22.2	0.776	1
C3orf70	Del_9p23	0.776	1
CTNNB1	Del_9p21.3	0.776	1
DNAH6	Del_5q12.1	0.776	1
EP300	Amp_1q23.3	0.776	1
FAM47C	Del_11q23.3	0.776	1
FBXW7	Amp_4p16.3	0.776	1
KIAA1267	4q-Del	0.776	1
KLF5	RXRA	0.776	1
KLF5	Amp_11q22.2	0.776	1
NFE2L2	7p-Amp	0.776	1
PTEN	Del_9p21.3	0.776	1
RAI1	20q-Amp	0.776	1
RAI1	Del_11q23.3	0.776	1
RUNX1	20p-Amp	0.776	1
RXRA	7p-Amp	0.776	1
TSC1	3q-Amp	0.776	1
TSC1	Del_15q13.1	0.776	1
20p-Amp	Del_Xp11.3	0.776	1
7p-Amp	22q-Del	0.776	1
4q-Del	Amp_8q22.3	0.776	1
4q-Del	Amp_11q22.2	0.776	1
CNNM4	Amp_3q26.33	0.777	1
CNNM4	Amp_11q13.3	0.777	1
CREBBP	17p-Del	0.777	1
NF2	Amp_3q26.33	0.777	1
PIK3CA	5p-Amp	0.777	1
SF1	Del_10q23.31	0.777	1
TSC1	8q-Amp	0.777	1
11p-Del	Amp_7p21.1	0.777	1
RXRA	SPTAN1	0.778	1
SPTAN1	Amp_11q22.2	0.778	1
16p-Del	Amp_7p11.2	0.778	1
22q-Del	Amp_7p11.2	0.778	1
ARID1B	Amp_17q23.3	0.779	1
ELF3	KLF5	0.779	1
EP300	ZFP36L1	0.779	1
PARD3	Amp_19q12	0.779	1
ZFP36L1	11p-Del	0.779	1
4q-Del	Amp_17q23.3	0.779	1
ATM	Del_3p14.2	0.78	1
CDKN1A	Del_17p12	0.78	1
CDKN2A	Del_11p15.5	0.78	1
PKHD1	Del_13q14.2	0.78	1
SCARF2	Amp_10p14	0.78	1
19q-Amp	Del_4q22.1	0.78	1
ELF3	17q-Amp	0.781	1
ELF3	Del_1q32.1	0.781	1
ELF3	Del_Xq21.33	0.781	1
GNA13	Amp_17q23.3	0.781	1
MBD1	PIK3CA	0.781	1
MBD1	Del_3p14.2	0.781	1
PIK3CA	Del_Xq21.33	0.781	1
SHANK1	Amp_16p13.2	0.781	1
TMCO4	Del_3p14.2	0.781	1
CNOT1	Del_8p21.3	0.782	1
FAM47C	Del_8p21.3	0.782	1
FBXW7	Del_4q34.2	0.782	1
HES1	Del_11q23.3	0.782	1
RAI1	Del_8p21.3	0.782	1
RUNX1	Amp_20q11.21	0.782	1
UNC93B1	Del_11p15.5	0.782	1
5q-Del	Amp_7p11.2	0.782	1
Amp_7p11.2	Del_19p13.3	0.782	1
CDKN1A	DNAH6	0.783	1
DNAH6	5q-Del	0.783	1
HRAS	11q-Del	0.783	1
METTL3	TSC1	0.783	1
RB1	19q-Amp	0.783	1
TXNIP	5q-Del	0.783	1
TXNIP	Del_19p13.3	0.783	1
9p-Del	Amp_4q13.3	0.783	1
FBXW7	Del_4q22.1	0.784	1
KDM6A	ZNF185	0.784	1
KDM6A	Del_2q37.1	0.784	1
Amp_11q22.2	Del_13q14.2	0.784	1
ASXL2	Amp_12q15	0.785	1
CNOT1	Del_17p12	0.785	1
HES1	Del_17p12	0.785	1
KRAS	MLL	0.785	1
KRAS	Amp_12q15	0.785	1
KRAS	Amp_13q22.1	0.785	1
MLL	Amp_17q12	0.785	1
MLL	Del_Xp11.3	0.785	1
RUNX1	Amp_12q15	0.785	1
STAG2	Amp_4p16.3	0.785	1
Amp_4p16.3	Amp_8p11.23	0.785	1
Amp_4p16.3	Del_16p13.3	0.785	1
Amp_13q22.1	Del_Xp11.3	0.785	1
Del_16q23.1	Del_Xp11.3	0.785	1
FAM47C	14q-Del	0.786	1
FAM47C	Del_2q34	0.786	1
HLA-A	Amp_3p25.2	0.786	1
IDH1	11p-Del	0.786	1
IDH1	17p-Del	0.786	1
MLL	Amp_22q12.2	0.786	1
PKHD1	Del_11q23.3	0.786	1
RAI1	14q-Del	0.786	1
RAI1	4p-Del	0.786	1
RB1	11q-Del	0.786	1
RBM10	4p-Del	0.786	1
Amp_5p15.33	Amp_12q15	0.786	1
Amp_16p13.2	Del_11q23.3	0.786	1
ARID1B	Amp_10p14	0.787	1
ATM	5p-Amp	0.788	1
CDKN2A	Del_12p13.1	0.788	1
KDM6A	Amp_1q23.3	0.788	1
KRAS	Amp_6p22.3	0.788	1
PARD3	RHOB	0.788	1
Amp_6p22.3	Del_Xp11.3	0.788	1
ASXL2	STAG2	0.789	1
ASXL2	Del_16p13.3	0.789	1
CREBBP	17q-Amp	0.789	1
DNAH6	Amp_8q22.3	0.789	1
EP300	TSC1	0.789	1
ERBB3	ERCC2	0.789	1
GNA13	Del_11q25	0.789	1
HES1	Del_2q34	0.789	1
Amp_8p11.23	Amp_17q12	0.789	1
Amp_17q12	Del_16p13.3	0.789	1
Del_1q32.1	Del_6q27	0.789	1
ARID1B	CREBBP	0.79	1
ARID1B	Amp_22q12.2	0.79	1
CDKN2A	Amp_3p25.2	0.79	1
CREBBP	Del_16q23.1	0.79	1
CSMD3	SF1	0.79	1
ERCC2	Del_7q36.3	0.79	1
FAT1	Amp_1q23.3	0.79	1
KLF5	Amp_22q12.2	0.79	1
NF2	Amp_8p11.23	0.79	1
NF2	Del_16p13.3	0.79	1
PKHD1	11q-Del	0.79	1
PKHD1	Del_19p13.3	0.79	1
SF1	Del_16p13.3	0.79	1
ZFP36L1	7p-Amp	0.79	1
ZFP36L1	Amp_20q11.21	0.79	1
7p-Amp	Del_6q27	0.79	1
Amp_16p13.2	Del_19p13.3	0.79	1
Del_11q25	Del_16q23.1	0.79	1
ELF3	Amp_7p11.2	0.791	1
KIAA1267	NFE2L2	0.791	1
KIAA1267	RXRA	0.791	1
KIAA1267	22q-Del	0.791	1
KIAA1267	Amp_11q22.2	0.791	1
NFE2L2	22q-Del	0.791	1
PKHD1	9q-Del	0.791	1
RXRA	Amp_11q22.2	0.791	1
5p-Amp	6q-Del	0.791	1
16p-Del	Amp_11q22.2	0.791	1
9q-Del	Amp_16p13.2	0.791	1
Amp_10p14	Del_9p23	0.791	1
CTNNB1	Del_11p15.5	0.792	1
HRAS	Amp_10p14	0.792	1
PTEN	Del_11p15.5	0.792	1
RHOA	3q-Amp	0.792	1
RHOA	6q-Del	0.792	1
RHOA	Del_15q13.1	0.792	1
SHANK1	3q-Amp	0.792	1
THRAP3	Del_11p15.5	0.792	1
Amp_10p14	Del_11q23.3	0.792	1
Amp_11q13.3	Del_10q23.31	0.792	1
ASXL2	DNAH6	0.793	1
CUL1	Amp_19q13.43	0.793	1
ERBB3	FOXQ1	0.793	1
ERBB3	Del_1p36.11	0.793	1
HRAS	Amp_17q12	0.793	1
RUNX1	SPTAN1	0.793	1
10q-Del	Amp_3p25.2	0.793	1
Amp_7p11.2	Del_Xp11.3	0.793	1
KIAA1267	Del_5q12.1	0.794	1
PIK3CA	Amp_8p11.21	0.794	1
STAG2	8q-Amp	0.794	1
5p-Amp	Amp_10p14	0.794	1
Amp_11q22.2	Del_5q12.1	0.794	1
KRAS	Amp_1q21.3	0.795	1
MLL3	Del_3p14.2	0.795	1
ERBB2	17q-Amp	0.796	1
GNA13	Amp_19q12	0.796	1
PIK3CA	RHOA	0.796	1
ARID1A	11p-Del	0.797	1
ATM	Del_11q25	0.797	1
CDKN2A	Del_8p23.3	0.797	1
PIK3CA	Del_13q14.2	0.797	1
CUL1	Del_13q14.2	0.798	1
PKHD1	Del_2q34	0.798	1
SPTAN1	ZFP36L1	0.798	1
3p-Amp	Del_13q14.2	0.798	1
FAT1	Del_12p13.1	0.799	1
MLL2	Amp_8p11.21	0.799	1
RPTN	18q-Del	0.799	1
RPTN	Del_14q24.1	0.799	1
TSC1	Amp_19q12	0.799	1
18q-Del	Amp_4q13.3	0.799	1
18q-Del	Del_7q36.3	0.799	1
Amp_8p11.21	Del_2q34	0.799	1
ELF3	NFE2L2	0.8	1
ELF3	RXRA	0.8	1
ELF3	16p-Del	0.8	1
ERBB2	4q-Del	0.8	1
ERBB2	Del_9p21.3	0.8	1
KIAA1267	Amp_17q23.3	0.8	1
KLF5	Amp_19q12	0.8	1
NRAS	Amp_20q11.21	0.8	1
Amp_11q22.2	Del_3p14.2	0.8	1
CTNNB1	20p-Amp	0.801	1
CTNNB1	Del_22q13.32	0.801	1
EP300	ERBB3	0.801	1
ERBB3	11p-Del	0.801	1
ERCC2	Amp_3q26.33	0.801	1
ERCC2	Del_10q23.31	0.801	1
PARD3	14q-Del	0.801	1
PTEN	20p-Amp	0.801	1
RHOA	11p-Del	0.801	1
THRAP3	20p-Amp	0.801	1
THRAP3	Del_22q13.32	0.801	1
TP53	Del_11p15.5	0.801	1
1q-Amp	Del_22q13.32	0.801	1
7p-Amp	Del_9p23	0.801	1
ARID1A	HRAS	0.802	1
ARID1A	TXNIP	0.802	1
ARID1A	Amp_6q21	0.802	1
ATM	HES1	0.802	1
ATM	Amp_6q21	0.802	1
DNAH6	Del_4q22.1	0.802	1
EP300	RHOB	0.802	1
HES1	Del_4q34.2	0.802	1
KDM6A	Amp_4q13.3	0.802	1
KDM6A	Del_7q36.3	0.802	1
SPTAN1	Amp_10p14	0.802	1
TXNIP	Amp_5p15.33	0.802	1
ZBTB7B	Del_4q34.2	0.802	1
Amp_5p15.33	Amp_6q21	0.802	1
C3orf70	11q-Del	0.803	1
C3orf70	5q-Del	0.803	1
CDKN1A	3p-Amp	0.803	1
ERCC2	20p-Amp	0.803	1
KIAA1267	8p-Del	0.803	1
METTL3	Del_19p13.3	0.803	1
NFE2L2	8p-Del	0.803	1
STAG2	Del_11p15.5	0.803	1
17q-Amp	Del_2q22.1	0.803	1
3p-Amp	Del_19p13.3	0.803	1
Amp_8p11.21	Del_1q32.1	0.803	1
Amp_8p11.21	Del_Xq21.33	0.803	1
ARID1A	9p-Del	0.804	1
ERCC2	8p-Del	0.804	1
KDM6A	22q-Del	0.804	1
MLL3	Amp_4q13.3	0.804	1
NFE2L2	Amp_22q12.2	0.804	1
RXRA	Amp_22q12.2	0.804	1
ZFP36L1	22q-Del	0.804	1
ZFP36L1	Amp_11q22.2	0.804	1
22q-Del	Amp_22q12.2	0.804	1
9p-Del	Amp_5p15.33	0.804	1
ATM	RBM10	0.805	1
CDKN1A	3q-Amp	0.805	1
CDKN1A	Del_15q13.1	0.805	1
CNOT1	Del_4q34.2	0.805	1
FAT1	6q-Del	0.805	1
FAT1	Del_15q13.1	0.805	1
MLL2	Del_12p13.1	0.805	1
RBM10	Del_4q34.2	0.805	1
RHOB	Amp_12q15	0.805	1
TMCO4	TP53	0.805	1
TP53	17q-Amp	0.805	1
TP53	Del_Xq21.33	0.805	1
C3orf70	Del_5q12.1	0.806	1
CREBBP	SPTAN1	0.806	1
EP300	9p-Del	0.806	1
METTL3	Del_5q12.1	0.806	1
SPTAN1	Del_11q25	0.806	1
TSC1	Amp_19q13.43	0.806	1
3p-Amp	Del_5q12.1	0.806	1
Amp_7p11.2	Del_6q27	0.806	1
ZFP36L1	Amp_1q21.3	0.807	1
5p-Amp	17p-Del	0.807	1
ASXL2	RB1	0.808	1
CDKN1A	Del_3p14.2	0.808	1
ELF3	RUNX1	0.808	1
IDH1	Del_9p21.3	0.808	1
KRAS	Amp_17q23.3	0.808	1
RAI1	TP53	0.808	1
RUNX1	Amp_17q23.3	0.808	1
Amp_17q23.3	Del_Xp11.3	0.808	1
CSMD3	7q-Amp	0.809	1
CTNNB1	Amp_13q22.1	0.809	1
FOXA1	Amp_12q15	0.809	1
FOXA1	Del_8p23.3	0.809	1
FOXQ1	Del_16q23.1	0.809	1
HLA-A	Amp_1q21.3	0.809	1
MLL	Del_1p36.11	0.809	1
STAG2	7q-Amp	0.809	1
THRAP3	Amp_12q15	0.809	1
1q-Amp	Amp_12q15	0.809	1
1q-Amp	Del_6p25.3	0.809	1
6q-Del	Amp_4p16.3	0.809	1
Del_1p36.11	Del_16q23.1	0.809	1
CDKN1A	Amp_1q23.3	0.81	1
CNOT1	Amp_1p34.2	0.81	1
CREBBP	NFE2L2	0.81	1
CREBBP	RXRA	0.81	1
CREBBP	16p-Del	0.81	1
FAM47C	FBXW7	0.81	1
FAT1	Del_1q32.1	0.81	1
FBXW7	Del_14q24.1	0.81	1
KLF5	Amp_8p11.21	0.81	1
KLF5	Del_2q22.1	0.81	1
NFE2L2	Del_6q27	0.81	1
RAI1	Amp_1p34.2	0.81	1
17q-Amp	Del_11q23.3	0.81	1
20q-Amp	Del_Xq21.33	0.81	1
17p-Del	Amp_19q13.43	0.81	1
4q-Del	Del_2q22.1	0.81	1
CNOT1	Del_11p15.5	0.811	1
DNAH6	ERCC2	0.811	1
RHOA	Del_9p23	0.811	1
SHANK1	Del_9p23	0.811	1
STAG2	Del_8p21.3	0.811	1
C3orf70	Amp_17q12	0.812	1
CREBBP	Amp_1q21.3	0.812	1
ERCC2	MLL2	0.812	1
20p-Amp	4p-Del	0.812	1
3p-Amp	Amp_17q12	0.812	1
Amp_10p14	Amp_11q22.2	0.812	1
ATM	Amp_5p15.33	0.813	1
7q-Amp	Del_9p21.3	0.813	1
4p-Del	Amp_1q23.3	0.813	1
CNNM4	Del_18q23	0.814	1
CNOT1	Amp_11q13.3	0.814	1
DNAH6	RB1	0.814	1
DNAH6	9p-Del	0.814	1
KDM6A	Amp_3q26.33	0.814	1
KLF5	RB1	0.814	1
NF2	8q-Amp	0.814	1
RB1	Amp_8p11.21	0.814	1
RBM10	Amp_11q13.3	0.814	1
7p-Amp	9p-Del	0.814	1
8q-Amp	14q-Del	0.814	1
CREBBP	RUNX1	0.815	1
CREBBP	Del_Xp11.3	0.815	1
ERBB3	Del_7q36.3	0.815	1
ERCC2	Amp_10p14	0.815	1
FBXW7	STAG2	0.815	1
FBXW7	Amp_8p11.23	0.815	1
RUNX1	Del_6q27	0.815	1
RUNX1	Del_11q25	0.815	1
Amp_7p21.1	Del_Xp11.3	0.815	1
Del_11q25	Del_Xp11.3	0.815	1
ARID1B	14q-Del	0.816	1
CDKN2A	Amp_20q11.21	0.816	1
ERBB2	Amp_19q13.43	0.816	1
ERCC2	Amp_13q22.1	0.816	1
FAT1	Del_22q13.32	0.816	1
KLF5	14q-Del	0.816	1
KLF5	4p-Del	0.816	1
PKHD1	7q-Amp	0.816	1
PKHD1	Del_4q22.1	0.816	1
15q-Del	Amp_16p13.2	0.816	1
ARID1A	RHOB	0.817	1
ATM	9q-Del	0.817	1
CDKN2A	RXRA	0.817	1
CDKN2A	16p-Del	0.817	1
KLF5	Amp_1q23.3	0.817	1
NF2	Amp_1q23.3	0.817	1
PTEN	SPTAN1	0.817	1
PTEN	Amp_20q11.21	0.817	1
SPTAN1	Del_1p36.11	0.817	1
1q-Amp	Amp_7p11.2	0.817	1
1q-Amp	Amp_20q11.21	0.817	1
9q-Del	Amp_22q12.2	0.817	1
Amp_7p11.2	Del_1p36.11	0.817	1
ASXL2	Del_15q13.1	0.818	1
CUL1	Del_17p12	0.818	1
MLL	Amp_8p11.21	0.818	1
MLL2	Del_11p15.5	0.818	1
PIK3CA	RB1	0.818	1
RBM10	Amp_3p25.2	0.818	1
10q-Del	Amp_17q12	0.818	1
Amp_4p16.3	Del_18q23	0.818	1
DNAH6	18q-Del	0.819	1
ELF3	Amp_22q12.2	0.819	1
HRAS	18q-Del	0.819	1
HRAS	Del_14q24.1	0.819	1
TSC1	11q-Del	0.819	1
ARID1A	Del_9p23	0.82	1
CDKN2A	Del_8p21.3	0.82	1
CUL1	Amp_10p14	0.82	1
EP300	SF1	0.82	1
ERBB2	RXRA	0.82	1
ERBB2	16p-Del	0.82	1
ERBB2	22q-Del	0.82	1
ERBB2	Amp_6p22.3	0.82	1
ERBB2	Amp_7p11.2	0.82	1
FAT1	4q-Del	0.82	1
GNA13	Del_9p21.3	0.82	1
RHOA	Del_8p21.3	0.82	1
SF1	11p-Del	0.82	1
SF1	17p-Del	0.82	1
Amp_5p15.33	Del_9p23	0.82	1
ARID1A	PLCXD3	0.821	1
CDKN1A	RHOA	0.821	1
CDKN1A	Amp_7p21.1	0.821	1
CSMD3	HES1	0.821	1
CUL1	Del_4q22.1	0.821	1
FGFR3	ZBTB7B	0.821	1
HES1	Del_16p13.3	0.821	1
SHANK1	11q-Del	0.821	1
SHANK1	5q-Del	0.821	1
3p-Amp	Del_4q22.1	0.821	1
Del_9p23	Del_10q23.31	0.821	1
CSMD3	Amp_3q26.33	0.822	1
ELF3	Del_16p13.3	0.822	1
PIK3CA	Amp_20q11.21	0.822	1
ZNF185	Del_8p21.3	0.822	1
14q-Del	Amp_12q15	0.822	1
14q-Del	Del_16q23.1	0.822	1
4p-Del	Amp_12q15	0.822	1
Amp_19q12	Del_Xp11.3	0.822	1
FBXW7	KDM6A	0.823	1
RPTN	20p-Amp	0.823	1
THRAP3	Amp_6p22.3	0.823	1
19q-Amp	20p-Amp	0.823	1
1q-Amp	Amp_6p22.3	0.823	1
FBXW7	Del_12p13.1	0.824	1
MLL2	Del_11q23.3	0.824	1
Amp_1p34.2	Del_12p13.1	0.824	1
Amp_12q15	Del_18q23	0.824	1
ERCC2	FGFR3	0.825	1
FOXA1	Del_8p21.3	0.825	1
NF1	18q-Del	0.825	1
PTEN	Del_8p21.3	0.825	1
THRAP3	Del_8p21.3	0.825	1
1q-Amp	Del_8p21.3	0.825	1
ATM	Del_12p13.1	0.826	1
KDM6A	Del_22q13.32	0.826	1
NRAS	PIK3CA	0.826	1
NUDT11	PIK3CA	0.826	1
PKHD1	Amp_5p15.33	0.826	1
PSIP1	3q-Amp	0.826	1
RB1	STAG2	0.826	1
7q-Amp	10q-Del	0.826	1
KLF5	Del_9p21.3	0.828	1
Amp_19q13.43	Del_2q22.1	0.828	1
ARID1B	Del_2q34	0.829	1
FOXA1	Amp_1q21.3	0.829	1
KIAA1267	4p-Del	0.829	1
KIAA1267	Amp_8p11.21	0.829	1
PTEN	Amp_1q21.3	0.829	1
RUNX1	Amp_8p11.21	0.829	1
RUNX1	Del_2q22.1	0.829	1
RXRA	Amp_8p11.21	0.829	1
19p-Del	Amp_3p25.2	0.829	1
4p-Del	Amp_11q22.2	0.829	1
Amp_11q22.2	Del_2q22.1	0.829	1
ATM	MBD1	0.83	1
ATM	8p-Del	0.83	1
CUL1	ERCC2	0.83	1
KDM6A	5p-Amp	0.83	1
RHOB	ZFP36L1	0.83	1
CNOT1	PKHD1	0.831	1
CNOT1	Amp_16p13.2	0.831	1
CREBBP	9q-Del	0.831	1
CSMD3	RBM10	0.831	1
CTNNB1	Del_3p14.2	0.831	1
CUL1	Amp_8q22.3	0.831	1
ELF3	Del_1p36.11	0.831	1
FAM47C	STAG2	0.831	1
FAT1	RB1	0.831	1
FAT1	Del_16q23.1	0.831	1
FGFR3	RBM10	0.831	1
MLL2	SF1	0.831	1
PKHD1	RBM10	0.831	1
PKHD1	Amp_11q13.3	0.831	1
PKHD1	Del_10q23.31	0.831	1
PTEN	Del_3p14.2	0.831	1
RAI1	Amp_16p13.2	0.831	1
RB1	Del_11q23.3	0.831	1
RHOA	9q-Del	0.831	1
RHOA	Del_5q12.1	0.831	1
1q-Amp	Del_3p14.2	0.831	1
Amp_4q13.3	Amp_13q22.1	0.831	1
Amp_17q23.3	Del_1p36.11	0.831	1
CDKN1A	ERBB2	0.832	1
MLL3	8q-Amp	0.832	1
MLL3	Amp_19q12	0.832	1
5q-Del	Amp_19q12	0.832	1
CDKN1A	Amp_19q13.43	0.833	1
ERBB3	FBXW7	0.833	1
HRAS	Del_2q37.1	0.833	1
9q-Del	Amp_3q26.33	0.833	1
Amp_7p11.2	Del_2q22.1	0.833	1
ARID1A	Del_10q23.31	0.834	1
FGFR3	NF1	0.834	1
STAG2	TP53	0.834	1
ASXL2	8q-Amp	0.835	1
ELF3	Del_6q27	0.835	1
ERBB3	TXNIP	0.835	1
MLL2	Amp_16p13.2	0.835	1
RUNX1	20q-Amp	0.835	1
Amp_17q23.3	Del_6q27	0.835	1
ASXL2	Amp_7p21.1	0.836	1
ASXL2	Del_6q27	0.836	1
CNNM4	Del_13q14.2	0.836	1
EP300	9q-Del	0.836	1
EP300	Amp_13q22.1	0.836	1
EP300	Del_6p25.3	0.836	1
GNA13	Amp_11q13.3	0.836	1
METTL3	Amp_5p15.33	0.836	1
NF2	Del_13q14.2	0.836	1
PARD3	Del_11p15.5	0.836	1
PSIP1	TSC1	0.836	1
TMCO4	Amp_3q26.33	0.836	1
TSC1	7q-Amp	0.836	1
TSC1	15q-Del	0.836	1
17q-Amp	Amp_3q26.33	0.836	1
3p-Amp	Amp_5p15.33	0.836	1
Amp_3q26.33	Del_1q32.1	0.836	1
CSMD3	Del_6q27	0.837	1
CSMD3	Del_11q25	0.837	1
FGFR3	5p-Amp	0.837	1
KIAA1267	RB1	0.837	1
PIK3CA	Amp_17q23.3	0.837	1
RXRA	9p-Del	0.837	1
Amp_8p11.23	Del_11q25	0.837	1
ATM	10q-Del	0.838	1
CREBBP	FOXQ1	0.838	1
CREBBP	THRAP3	0.838	1
CREBBP	Del_1p36.11	0.838	1
CTNNB1	Del_6q27	0.838	1
FAT1	16p-Del	0.838	1
FBXW7	KLF5	0.838	1
FOXQ1	Del_11q25	0.838	1
KIAA1267	20q-Amp	0.838	1
KLF5	MLL3	0.838	1
NFE2L2	20q-Amp	0.838	1
RBM10	Amp_8q22.3	0.838	1
RHOA	8p-Del	0.838	1
SPTAN1	Amp_4q13.3	0.838	1
SPTAN1	Del_7q36.3	0.838	1
Amp_4q13.3	Amp_7p11.2	0.838	1
Amp_7p11.2	Del_7q36.3	0.838	1
CDKN2A	9q-Del	0.839	1
PIK3CA	Amp_22q12.2	0.839	1
RHOA	Del_4q22.1	0.839	1
Amp_6p22.3	Del_2q22.1	0.839	1
Amp_17q23.3	Del_4q22.1	0.839	1
PKHD1	Del_14q24.1	0.84	1
SPTAN1	8q-Amp	0.84	1
4p-Del	Amp_20q11.21	0.84	1
CNNM4	9q-Del	0.841	1
CNOT1	3q-Amp	0.841	1
FAM47C	Del_15q13.1	0.841	1
NF2	Del_5q12.1	0.841	1
PSIP1	Del_18q23	0.841	1
RAI1	10q-Del	0.841	1
RAI1	6q-Del	0.841	1
RBM10	10q-Del	0.841	1
SF1	Del_5q12.1	0.841	1
8q-Amp	15q-Del	0.841	1
Amp_5p15.33	Del_1q32.1	0.841	1
ATM	Del_11q23.3	0.842	1
FAT1	Amp_8q22.3	0.842	1
KRAS	Del_2q34	0.842	1
SCARF2	Amp_20q11.21	0.842	1
TSC1	8p-Del	0.842	1
4p-Del	Amp_22q12.2	0.842	1
Del_2q34	Del_Xp11.3	0.842	1
ARID1A	FAT1	0.843	1
DNAH6	Del_22q13.32	0.843	1
FBXW7	20p-Amp	0.843	1
HES1	Del_18q23	0.843	1
HRAS	Del_22q13.32	0.843	1
TXNIP	Del_22q13.32	0.843	1
ZBTB7B	8q-Amp	0.843	1
8q-Amp	Amp_6q21	0.843	1
Amp_7p11.2	Del_14q24.1	0.843	1
MLL	Del_2q34	0.844	1
CDKN2A	CREBBP	0.845	1
CDKN2A	Amp_7p21.1	0.845	1
CNNM4	8p-Del	0.845	1
CTNNB1	ERBB2	0.845	1
ERBB2	FOXA1	0.845	1
ERBB2	PTEN	0.845	1
ERBB2	Del_1p36.11	0.845	1
FAT1	Del_8p21.3	0.845	1
PIK3CA	Amp_17q12	0.845	1
PKHD1	Del_12p13.1	0.845	1
SHANK1	Del_9p21.3	0.845	1
THRAP3	Amp_19q12	0.845	1
1q-Amp	Amp_19q12	0.845	1
Amp_7p11.2	Del_11q23.3	0.845	1
Amp_16p13.2	Del_12p13.1	0.845	1
ATM	4q-Del	0.846	1
FAT1	Amp_20q11.21	0.846	1
ASXL2	Amp_19q12	0.847	1
CSMD3	GNA13	0.847	1
CSMD3	MBD1	0.847	1
CSMD3	17q-Amp	0.847	1
FGFR3	MBD1	0.847	1
FGFR3	17q-Amp	0.847	1
GNA13	STAG2	0.847	1
RAI1	Amp_6p22.3	0.847	1
RPTN	Amp_20q11.21	0.847	1
17q-Amp	Amp_8p11.23	0.847	1
9q-Del	Amp_19q12	0.847	1
Amp_11q22.2	Del_2q34	0.847	1
Del_1q32.1	Del_16p13.3	0.847	1
CDKN1A	5p-Amp	0.848	1
CREBBP	Del_6q27	0.848	1
EP300	7q-Amp	0.848	1
KLF5	NF1	0.848	1
SPTAN1	Amp_6p22.3	0.848	1
ZBTB7B	11p-Del	0.848	1
ZBTB7B	17p-Del	0.848	1
5p-Amp	5q-Del	0.848	1
10q-Del	Amp_11q13.3	0.848	1
17p-Del	Amp_6q21	0.848	1
4p-Del	Amp_6p22.3	0.848	1
Amp_4p16.3	Del_13q14.2	0.848	1
Amp_7p21.1	Del_11q25	0.848	1
MLL3	Amp_8p11.21	0.849	1
SHANK1	Del_17p12	0.849	1
TP53	11q-Del	0.849	1
ARID1A	10q-Del	0.85	1
CNNM4	Amp_10p14	0.85	1
DNAH6	Del_6p25.3	0.85	1
FGFR3	Amp_8p11.23	0.85	1
HRAS	Amp_12q15	0.85	1
RBM10	TSC1	0.85	1
SCARF2	Amp_1q21.3	0.85	1
TXNIP	Amp_12q15	0.85	1
ARID1B	Del_8p21.3	0.851	1
CTNNB1	Amp_8p11.21	0.851	1
CTNNB1	Del_2q22.1	0.851	1
DNAH6	Del_11p15.5	0.851	1
FOXQ1	PIK3CA	0.851	1
KLF5	Del_8p21.3	0.851	1
NFE2L2	Amp_1p34.2	0.851	1
PARD3	STAG2	0.851	1
PIK3CA	PTEN	0.851	1
PIK3CA	Del_1p36.11	0.851	1
PKHD1	Amp_8p11.23	0.851	1
PTEN	Amp_8p11.21	0.851	1
STAG2	Amp_16p13.2	0.851	1
THRAP3	Amp_8p11.21	0.851	1
1q-Amp	Amp_8p11.21	0.851	1
16p-Del	Amp_1p34.2	0.851	1
17p-Del	Amp_7p11.2	0.851	1
22q-Del	Amp_1p34.2	0.851	1
ELF3	19q-Amp	0.852	1
ERBB2	Del_16p13.3	0.852	1
FGFR3	Amp_19q12	0.852	1
MLL3	Amp_12q15	0.852	1
4p-Del	Amp_17q23.3	0.852	1
Amp_4q13.3	Del_3p14.2	0.852	1
CDKN1A	7q-Amp	0.853	1
CDKN1A	15q-Del	0.853	1
CUL1	ERBB3	0.853	1
KRAS	Del_4q34.2	0.853	1
PIK3CA	Amp_1q21.3	0.853	1
RBM10	Amp_1q21.3	0.853	1
Amp_1p34.2	Del_6p25.3	0.853	1
Amp_1p34.2	Del_18q23	0.853	1
Amp_10p14	Del_11q25	0.853	1
ARID1B	Amp_11q13.3	0.854	1
ARID1B	Del_10q23.31	0.854	1
CDKN1A	FAT1	0.854	1
CDKN1A	20q-Amp	0.854	1
CDKN2A	Amp_19q12	0.854	1
ERBB2	RHOB	0.854	1
FAT1	Del_19p13.3	0.854	1
KLF5	Del_10q23.31	0.854	1
RHOB	Amp_19q12	0.854	1
STAG2	Amp_20q11.21	0.854	1
ZFP36L1	Del_9p23	0.854	1
Amp_8q22.3	Del_11q25	0.854	1
PARD3	10q-Del	0.855	1
SCARF2	TP53	0.855	1
Amp_4p16.3	Del_4q22.1	0.855	1
NRAS	Del_17p12	0.856	1
NUDT11	Del_17p12	0.856	1
TP53	TSC1	0.856	1
TP53	Amp_17q23.3	0.856	1
4p-Del	Amp_1q21.3	0.856	1
CDKN1A	Amp_17q12	0.857	1
ERBB3	Amp_13q22.1	0.857	1
FAT1	FOXA1	0.857	1
HRAS	Amp_3p25.2	0.857	1
HRAS	Amp_7p11.2	0.857	1
MLL	Del_17p12	0.857	1
MLL3	Del_4q22.1	0.857	1
NF1	Del_22q13.32	0.857	1
PTEN	20q-Amp	0.857	1
THRAP3	20q-Amp	0.857	1
THRAP3	Del_11q23.3	0.857	1
TXNIP	Amp_7p11.2	0.857	1
5p-Amp	Amp_12q15	0.857	1
5p-Amp	Del_6p25.3	0.857	1
Amp_17q12	Del_2q22.1	0.857	1
CREBBP	19q-Amp	0.858	1
PKHD1	7p-Amp	0.858	1
PKHD1	4q-Del	0.858	1
RPTN	Del_11q25	0.858	1
19q-Amp	Amp_7p21.1	0.858	1
5p-Amp	Amp_6q21	0.858	1
4q-Del	Amp_16p13.2	0.858	1
Del_7q36.3	Del_11q25	0.858	1
C3orf70	Del_2q37.1	0.859	1
IDH1	Del_11p15.5	0.859	1
KIAA1267	MLL3	0.859	1
KRAS	Amp_11q13.3	0.859	1
METTL3	MLL3	0.859	1
NFE2L2	Del_2q37.1	0.859	1
RAI1	Amp_19q13.43	0.859	1
RUNX1	Amp_11q13.3	0.859	1
RUNX1	Del_10q23.31	0.859	1
Amp_11q13.3	Del_Xp11.3	0.859	1
Amp_11q22.2	Del_2q37.1	0.859	1
C3orf70	20p-Amp	0.86	1
ERBB2	Del_6q27	0.86	1
ERBB2	Del_11q25	0.86	1
KRAS	Del_17p12	0.86	1
METTL3	20p-Amp	0.86	1
NFE2L2	Del_8p23.3	0.86	1
STAG2	Del_8p23.3	0.86	1
FAM47C	Del_18q23	0.861	1
FBXW7	17p-Del	0.861	1
NF1	NFE2L2	0.861	1
NF1	16p-Del	0.861	1
NF1	Amp_11q22.2	0.861	1
PTEN	Del_9p23	0.861	1
RAI1	8q-Amp	0.861	1
THRAP3	Del_9p23	0.861	1
TSC1	Amp_1q21.3	0.861	1
17p-Del	Amp_1p34.2	0.861	1
FBXW7	Amp_7p11.2	0.862	1
KDM6A	5q-Del	0.862	1
5p-Amp	15q-Del	0.862	1
15q-Del	Amp_17q12	0.862	1
Amp_17q12	Del_9p23	0.862	1
ARID1A	MLL2	0.863	1
ARID1A	Del_18q23	0.863	1
CTNNB1	Del_2q34	0.863	1
FBXW7	ZFP36L1	0.863	1
HES1	Del_13q14.2	0.863	1
PARD3	TSC1	0.863	1
TSC1	Amp_11q13.3	0.863	1
TSC1	Del_12p13.1	0.863	1
Amp_1p34.2	Amp_22q12.2	0.863	1
Amp_11q13.3	Del_22q13.32	0.863	1
CNNM4	RB1	0.864	1
CNNM4	9p-Del	0.864	1
ERBB2	Amp_4q13.3	0.864	1
ERBB2	Del_7q36.3	0.864	1
PARD3	Amp_20q11.21	0.864	1
RB1	RHOA	0.864	1
RB1	SHANK1	0.864	1
RHOA	9p-Del	0.864	1
SF1	9p-Del	0.864	1
STAG2	Amp_8p11.21	0.865	1
STAG2	Del_2q22.1	0.865	1
THRAP3	Amp_8q22.3	0.865	1
ARID1A	NUDT11	0.866	1
ATM	Del_6p25.3	0.866	1
CSMD3	10q-Del	0.866	1
CSMD3	Del_15q13.1	0.866	1
EP300	8q-Amp	0.866	1
FGFR3	3q-Amp	0.866	1
HES1	Del_8p23.3	0.866	1
HLA-A	Amp_5p15.33	0.866	1
PLCXD3	Del_8p23.3	0.866	1
STAG2	3q-Amp	0.866	1
UNC93B1	Amp_5p15.33	0.866	1
8q-Amp	17p-Del	0.866	1
Amp_12q15	Del_4q34.2	0.866	1
ARID1B	10q-Del	0.867	1
ARID1B	Del_15q13.1	0.867	1
ASXL2	20q-Amp	0.867	1
C3orf70	Amp_13q22.1	0.867	1
C3orf70	Del_6p25.3	0.867	1
C3orf70	Del_16q23.1	0.867	1
CDKN1A	FAM47C	0.867	1
CDKN1A	RAI1	0.867	1
CNOT1	11q-Del	0.867	1
CUL1	Amp_12q15	0.867	1
CUL1	Del_6p25.3	0.867	1
FAM47C	11q-Del	0.867	1
FAM47C	Del_19p13.3	0.867	1
KLF5	3q-Amp	0.867	1
KLF5	Del_15q13.1	0.867	1
NF1	Amp_12q15	0.867	1
NF1	Amp_13q22.1	0.867	1
RBM10	Del_19p13.3	0.867	1
TP53	Del_Xp11.3	0.867	1
22q-Del	Del_9p21.3	0.867	1
ATM	Amp_19q13.43	0.868	1
CSMD3	KLF5	0.868	1
EP300	RAI1	0.868	1
HES1	9q-Del	0.868	1
KLF5	Amp_8p11.23	0.868	1
MLL	20p-Amp	0.868	1
STAG2	7p-Amp	0.868	1
TMCO4	8q-Amp	0.868	1
ZBTB7B	Del_5q12.1	0.868	1
7p-Amp	Del_16p13.3	0.868	1
8q-Amp	Del_Xq21.33	0.868	1
11q-Del	Del_4q22.1	0.868	1
9q-Del	Amp_6q21	0.868	1
C3orf70	KDM6A	0.869	1
CUL1	KDM6A	0.869	1
ERBB3	RHOA	0.869	1
FBXW7	Del_17p12	0.869	1
MLL2	PLCXD3	0.869	1
PSIP1	Del_4q22.1	0.869	1
DNAH6	ELF3	0.87	1
DNAH6	Del_3p14.2	0.87	1
ELF3	HRAS	0.87	1
FGFR3	KRAS	0.87	1
HRAS	Amp_17q23.3	0.87	1
KIAA1267	PKHD1	0.87	1
KIAA1267	Amp_3q26.33	0.87	1
KIAA1267	Amp_16p13.2	0.87	1
KRAS	STAG2	0.87	1
NF1	Del_11p15.5	0.87	1
NFE2L2	PKHD1	0.87	1
NFE2L2	Amp_11q13.3	0.87	1
PKHD1	16p-Del	0.87	1
PKHD1	22q-Del	0.87	1
RUNX1	Amp_8p11.23	0.87	1
RUNX1	Del_16p13.3	0.87	1
RXRA	Amp_16p13.2	0.87	1
STAG2	Del_Xp11.3	0.87	1
TXNIP	Amp_17q23.3	0.87	1
19q-Amp	Del_2q22.1	0.87	1
18q-Del	Amp_4p16.3	0.87	1
22q-Del	Amp_11q13.3	0.87	1
9q-Del	Amp_3p25.2	0.87	1
Amp_11q22.2	Del_17p12	0.87	1
ARID1A	STAG2	0.871	1
ATM	17p-Del	0.871	1
RUNX1	Del_9p21.3	0.871	1
ARID1A	TSC1	0.872	1
PIK3CA	10q-Del	0.872	1
ZBTB7B	8p-Del	0.872	1
19p-Del	Del_9p23	0.872	1
9q-Del	Amp_5p15.33	0.872	1
EP300	GNA13	0.873	1
FGFR3	8p-Del	0.873	1
ZFP36L1	Amp_1q23.3	0.873	1
ATM	FOXQ1	0.874	1
ATM	Del_1p36.11	0.874	1
CDKN2A	Amp_1p34.2	0.874	1
Amp_7p21.1	Del_9p23	0.874	1
ASXL2	FAM47C	0.875	1
CNOT1	Amp_17q12	0.875	1
CUL1	Del_11p15.5	0.875	1
FAM47C	Amp_17q12	0.875	1
FGFR3	Amp_1q21.3	0.875	1
KDM6A	PARD3	0.875	1
RBM10	Amp_17q12	0.875	1
ATM	Del_8p23.3	0.876	1
FAT1	Del_7q36.3	0.876	1
HRAS	Amp_7p21.1	0.876	1
HRAS	Del_11q25	0.876	1
KLF5	TSC1	0.876	1
MLL3	SF1	0.876	1
MLL3	Amp_6p22.3	0.876	1
RPTN	20q-Amp	0.876	1
RPTN	Del_11q23.3	0.876	1
TSC1	7p-Amp	0.876	1
5p-Amp	Amp_20q11.21	0.876	1
Amp_4q13.3	Del_11q23.3	0.876	1
Amp_13q22.1	Del_10q23.31	0.876	1
NF1	11p-Del	0.877	1
9q-Del	Del_6p25.3	0.877	1
Amp_3p25.2	Del_9p23	0.877	1
Amp_8p11.23	Del_11q23.3	0.877	1
Amp_17q12	Del_2q34	0.877	1
ATM	ZFP36L1	0.878	1
ATM	Amp_7p11.2	0.878	1
CDKN1A	ERCC2	0.878	1
MLL3	Amp_22q12.2	0.878	1
ZBTB7B	Del_8p21.3	0.878	1
ZFP36L1	Del_4q34.2	0.878	1
CTNNB1	Amp_3q26.33	0.879	1
FOXA1	Amp_3q26.33	0.879	1
FOXA1	Amp_11q13.3	0.879	1
KIAA1267	Del_15q13.1	0.879	1
MLL	Amp_12q15	0.879	1
NFE2L2	Del_15q13.1	0.879	1
PARD3	8q-Amp	0.879	1
PTEN	Amp_3q26.33	0.879	1
PTEN	Amp_11q13.3	0.879	1
THRAP3	Amp_3q26.33	0.879	1
3q-Amp	22q-Del	0.879	1
6q-Del	Amp_11q22.2	0.879	1
Amp_11q13.3	Del_1p36.11	0.879	1
Amp_13q22.1	Del_16q23.1	0.879	1
CNOT1	5p-Amp	0.88	1
FBXW7	Amp_20q11.21	0.88	1
MLL	Del_11p15.5	0.88	1
RAI1	5p-Amp	0.88	1
ATM	CDKN1A	0.881	1
ATM	11q-Del	0.881	1
ELF3	Del_2q34	0.881	1
Del_6p25.3	Del_9p21.3	0.881	1
CREBBP	20q-Amp	0.882	1
ERBB3	MLL2	0.882	1
GNA13	5p-Amp	0.882	1
MLL	RHOA	0.882	1
RAI1	Del_4q22.1	0.882	1
RHOA	Amp_13q22.1	0.882	1
RHOA	Del_6p25.3	0.882	1
TXNIP	Amp_19q12	0.882	1
7q-Amp	Del_8p21.3	0.882	1
EP300	Amp_3q26.33	0.883	1
HRAS	Amp_1q21.3	0.883	1
KDM6A	4p-Del	0.883	1
MLL	Amp_5p15.33	0.883	1
CSMD3	16p-Del	0.884	1
CSMD3	Amp_11q22.2	0.884	1
FBXW7	Del_13q14.2	0.884	1
FGFR3	16p-Del	0.884	1
FGFR3	Amp_11q22.2	0.884	1
KDM6A	NUDT11	0.884	1
NFE2L2	Amp_8p11.23	0.884	1
NFE2L2	Del_16p13.3	0.884	1
4p-Del	Amp_1p34.2	0.884	1
Del_9p21.3	Del_16p13.3	0.884	1
EP300	Del_12p13.1	0.885	1
ERBB2	18q-Del	0.885	1
FAT1	14q-Del	0.885	1
C3orf70	Amp_17q23.3	0.886	1
FAM47C	Del_13q14.2	0.886	1
15q-Del	Amp_10p14	0.886	1
ARID1A	Amp_11q22.2	0.887	1
CNNM4	Del_11p15.5	0.887	1
DNAH6	Del_2q22.1	0.887	1
HRAS	Del_2q22.1	0.887	1
PARD3	Amp_17q12	0.887	1
PKHD1	SPTAN1	0.887	1
PKHD1	Amp_7p11.2	0.887	1
PKHD1	Del_11p15.5	0.887	1
SPTAN1	Amp_16p13.2	0.887	1
TSC1	22q-Del	0.887	1
TSC1	Amp_11q22.2	0.887	1
TXNIP	Del_2q22.1	0.887	1
Amp_4q13.3	Del_9p23	0.887	1
RAI1	Del_9p23	0.888	1
STAG2	Del_2q34	0.888	1
ATM	Amp_3q26.33	0.889	1
CSMD3	PTEN	0.889	1
CSMD3	1q-Amp	0.889	1
CTNNB1	Del_16p13.3	0.889	1
EP300	Del_14q24.1	0.889	1
FOXA1	Del_16p13.3	0.889	1
HES1	RB1	0.889	1
KRAS	Del_18q23	0.889	1
MLL2	17p-Del	0.889	1
RB1	ZBTB7B	0.889	1
RHOA	Amp_7p11.2	0.889	1
RUNX1	Del_18q23	0.889	1
THRAP3	Del_16p13.3	0.889	1
ZBTB7B	9p-Del	0.889	1
ZFP36L1	3q-Amp	0.889	1
ZFP36L1	10q-Del	0.889	1
9p-Del	Amp_6q21	0.889	1
CDKN1A	Del_10q23.31	0.89	1
GNA13	9q-Del	0.89	1
KLF5	Amp_6p22.3	0.89	1
MBD1	9q-Del	0.89	1
MLL	10q-Del	0.89	1
MLL3	Del_17p12	0.89	1
RB1	Amp_8q22.3	0.89	1
10q-Del	Amp_12q15	0.89	1
10q-Del	Amp_13q22.1	0.89	1
Amp_11q13.3	Del_19p13.3	0.89	1
ARID1B	11q-Del	0.891	1
ARID1B	Del_19p13.3	0.891	1
CDKN2A	PKHD1	0.891	1
CDKN2A	Amp_16p13.2	0.891	1
CREBBP	METTL3	0.891	1
CREBBP	3p-Amp	0.891	1
ERCC2	FAT1	0.891	1
ERCC2	20q-Amp	0.891	1
HRAS	Del_8p21.3	0.891	1
METTL3	Amp_7p21.1	0.891	1
NF2	Amp_3p25.2	0.891	1
PKHD1	RHOB	0.891	1
PKHD1	11p-Del	0.891	1
RB1	Amp_19q13.43	0.891	1
RHOB	Amp_16p13.2	0.891	1
STAG2	Amp_8q22.3	0.891	1
3p-Amp	Del_6q27	0.891	1
7p-Amp	11q-Del	0.891	1
9q-Del	Amp_1p34.2	0.891	1
ATM	RHOB	0.892	1
ATM	19q-Amp	0.892	1
FAM47C	9q-Del	0.892	1
MLL	Del_9p23	0.892	1
RAI1	Del_5q12.1	0.892	1
TXNIP	20q-Amp	0.892	1
EP300	Del_Xp11.3	0.893	1
FAT1	Del_11p15.5	0.893	1
KRAS	11p-Del	0.893	1
KRAS	17p-Del	0.893	1
TSC1	20p-Amp	0.893	1
ARID1B	8q-Amp	0.894	1
ARID1B	Del_18q23	0.894	1
MLL	Amp_8p11.23	0.894	1
NFE2L2	Amp_19q13.43	0.894	1
8q-Amp	4q-Del	0.894	1
22q-Del	Amp_19q13.43	0.894	1
8p-Del	Del_1q32.1	0.894	1
8p-Del	Del_Xq21.33	0.894	1
Amp_7p11.2	Del_11p15.5	0.894	1
Amp_10p14	Amp_12q15	0.894	1
KLF5	Amp_1q21.3	0.895	1
STAG2	Del_18q23	0.895	1
CDKN2A	Amp_1q23.3	0.896	1
CUL1	Amp_1q23.3	0.896	1
ERBB2	9p-Del	0.896	1
TSC1	Del_8p21.3	0.896	1
Amp_17q23.3	Del_2q37.1	0.896	1
Del_9p21.3	Del_10q23.31	0.896	1
ARID1A	Del_9p21.3	0.897	1
CREBBP	ERBB3	0.897	1
DNAH6	Del_2q34	0.897	1
METTL3	Amp_19q12	0.897	1
TSC1	Amp_22q12.2	0.897	1
5p-Amp	Amp_17q23.3	0.897	1
5p-Amp	Del_3p14.2	0.897	1
ASXL2	4q-Del	0.898	1
CSMD3	Amp_22q12.2	0.898	1
FGFR3	ZFP36L1	0.898	1
SPTAN1	8p-Del	0.898	1
STAG2	Amp_22q12.2	0.898	1
TMCO4	Amp_10p14	0.898	1
4p-Del	Amp_8q22.3	0.898	1
Del_1q32.1	Del_8p23.3	0.898	1
CDKN2A	Del_15q13.1	0.899	1
CUL1	Amp_6p22.3	0.899	1
ZFP36L1	Del_9p21.3	0.899	1
ARID1A	SCARF2	0.9	1
EP300	KLF5	0.9	1
ERBB2	Amp_20q11.21	0.9	1
FOXA1	Amp_5p15.33	0.9	1
KLF5	11p-Del	0.9	1
NUDT11	Amp_1q23.3	0.9	1
PKHD1	14q-Del	0.9	1
RHOA	Amp_17q23.3	0.9	1
RHOA	Del_3p14.2	0.9	1
1q-Amp	Amp_5p15.33	0.9	1
ATM	Del_8p21.3	0.901	1
CNNM4	Amp_20q11.21	0.901	1
FAT1	Amp_3p25.2	0.901	1
IDH1	Del_9p23	0.901	1
KIAA1267	11q-Del	0.901	1
MLL	TSC1	0.901	1
MLL2	17q-Amp	0.901	1
RB1	7q-Amp	0.901	1
TSC1	Amp_13q22.1	0.901	1
11q-Del	Amp_11q22.2	0.901	1
17p-Del	Amp_19q12	0.902	1
Amp_4p16.3	Amp_7p11.2	0.902	1
Amp_8q22.3	Del_9p21.3	0.902	1
Amp_1p34.2	Amp_10p14	0.903	1
CDKN1A	ERBB3	0.904	1
CSMD3	11p-Del	0.904	1
HES1	Amp_8q22.3	0.904	1
ARID1B	Del_4q22.1	0.905	1
ATM	4p-Del	0.905	1
CSMD3	SPTAN1	0.905	1
CSMD3	11q-Del	0.905	1
CSMD3	Del_19p13.3	0.905	1
FGFR3	RPTN	0.905	1
FGFR3	Del_19p13.3	0.905	1
HLA-A	Del_8p23.3	0.905	1
KLF5	Del_4q22.1	0.905	1
KRAS	Del_13q14.2	0.905	1
PIK3CA	Amp_19q13.43	0.905	1
RHOA	Del_6q27	0.905	1
SPTAN1	STAG2	0.905	1
Amp_7p11.2	Del_9p21.3	0.905	1
ARID1A	Amp_22q12.2	0.906	1
FOXA1	Del_18q23	0.906	1
FOXQ1	8q-Amp	0.906	1
PTEN	Del_18q23	0.906	1
THRAP3	8q-Amp	0.906	1
ZFP36L1	Amp_5p15.33	0.906	1
1q-Amp	Del_18q23	0.906	1
ARID1A	CDKN1A	0.907	1
ELF3	Amp_12q15	0.907	1
FAT1	3p-Amp	0.907	1
HLA-A	MLL2	0.907	1
METTL3	20q-Amp	0.907	1
NF2	Amp_1q21.3	0.907	1
11q-Del	Amp_5p15.33	0.907	1
ASXL2	22q-Del	0.908	1
CREBBP	Del_2q37.1	0.908	1
DNAH6	Del_9p23	0.908	1
ELF3	Del_10q23.31	0.908	1
ERBB3	RAI1	0.908	1
FGFR3	Amp_1q23.3	0.908	1
NFE2L2	Amp_17q12	0.908	1
PSIP1	Amp_12q15	0.908	1
PSIP1	Del_6p25.3	0.908	1
3q-Amp	14q-Del	0.908	1
3q-Amp	4p-Del	0.908	1
5p-Amp	Del_6q27	0.908	1
FBXW7	NF1	0.909	1
GNA13	9p-Del	0.909	1
MBD1	9p-Del	0.909	1
RB1	17q-Amp	0.909	1
RB1	Del_Xq21.33	0.909	1
Amp_10p14	Del_4q22.1	0.909	1
CREBBP	Amp_16p13.2	0.91	1
CREBBP	Del_4q34.2	0.91	1
CTNNB1	EP300	0.91	1
CTNNB1	11p-Del	0.91	1
EP300	THRAP3	0.91	1
FOXQ1	11p-Del	0.91	1
FOXQ1	17p-Del	0.91	1
HES1	Del_11p15.5	0.91	1
NF1	8p-Del	0.91	1
PIK3CA	Del_16p13.3	0.91	1
THRAP3	11p-Del	0.91	1
1q-Amp	17p-Del	0.91	1
Amp_20q11.21	Del_4q22.1	0.91	1
ARID1A	TP53	0.911	1
C3orf70	Del_9p21.3	0.911	1
CDKN2A	FGFR3	0.911	1
CTNNB1	TP53	0.911	1
DNAH6	Amp_3q26.33	0.911	1
HRAS	Amp_3q26.33	0.911	1
KLF5	5p-Amp	0.911	1
MLL3	Amp_19q13.43	0.911	1
TP53	1q-Amp	0.911	1
TP53	Del_1p36.11	0.911	1
ZFP36L1	Del_19p13.3	0.911	1
14q-Del	Amp_11q13.3	0.911	1
Amp_11q13.3	Del_13q14.2	0.911	1
CDKN1A	20p-Amp	0.912	1
RXRA	Amp_1q21.3	0.912	1
TP53	11p-Del	0.912	1
Amp_11q13.3	Del_4q22.1	0.912	1
CDKN2A	Amp_19q13.43	0.913	1
EP300	RXRA	0.913	1
FAM47C	Del_22q13.32	0.913	1
KIAA1267	11p-Del	0.913	1
KRAS	8p-Del	0.913	1
SPTAN1	7q-Amp	0.913	1
3q-Amp	Amp_17q23.3	0.913	1
6q-Del	Amp_17q23.3	0.913	1
ERCC2	18q-Del	0.914	1
FAT1	8q-Amp	0.914	1
PIK3CA	7p-Amp	0.914	1
RXRA	Del_4q22.1	0.914	1
Amp_11q13.3	Del_2q37.1	0.914	1
Amp_11q22.2	Del_4q22.1	0.914	1
ASXL2	Amp_8p11.23	0.915	1
CREBBP	MLL	0.915	1
CREBBP	Amp_12q15	0.915	1
CREBBP	Amp_13q22.1	0.915	1
CREBBP	Del_6p25.3	0.915	1
ERBB2	20p-Amp	0.915	1
FBXW7	PIK3CA	0.915	1
MLL	Del_6q27	0.915	1
MLL2	Del_11q25	0.915	1
RHOA	Del_2q22.1	0.915	1
SHANK1	Del_2q22.1	0.915	1
STAG2	Amp_17q12	0.915	1
TSC1	14q-Del	0.915	1
TSC1	4p-Del	0.915	1
CNOT1	RB1	0.916	1
KDM6A	Amp_11q22.2	0.916	1
KDM6A	Del_18q23	0.916	1
MLL	9p-Del	0.916	1
NF1	Amp_10p14	0.916	1
RAI1	9p-Del	0.916	1
RB1	Amp_12q15	0.916	1
3q-Amp	5p-Amp	0.916	1
9p-Del	Del_16q23.1	0.916	1
KLF5	18q-Del	0.917	1
KRAS	Amp_1q23.3	0.917	1
SPTAN1	Amp_19q13.43	0.917	1
Amp_4p16.3	Amp_7p21.1	0.917	1
CTNNB1	5p-Amp	0.918	1
EP300	Amp_20q11.21	0.918	1
FOXA1	5p-Amp	0.918	1
IDH1	Del_17p12	0.918	1
THRAP3	5p-Amp	0.918	1
5p-Amp	Del_1p36.11	0.918	1
C3orf70	PIK3CA	0.919	1
CDKN1A	MLL	0.919	1
CDKN1A	RHOB	0.919	1
CNOT1	Amp_13q22.1	0.919	1
CREBBP	6q-Del	0.919	1
DNAH6	Amp_8p11.23	0.919	1
FAT1	RHOA	0.919	1
FAT1	Del_2q34	0.919	1
GNA13	MLL3	0.919	1
MLL	5q-Del	0.919	1
MLL2	Del_19p13.3	0.919	1
MLL3	17q-Amp	0.919	1
MLL3	Amp_10p14	0.919	1
PIK3CA	SF1	0.919	1
RBM10	Amp_12q15	0.919	1
STAG2	TXNIP	0.919	1
TMCO4	Del_2q37.1	0.919	1
TXNIP	Del_16p13.3	0.919	1
11q-Del	Del_16q23.1	0.919	1
Amp_12q15	Del_19p13.3	0.919	1
ATM	CUL1	0.92	1
ERCC2	NFE2L2	0.92	1
ERCC2	Amp_11q22.2	0.92	1
KLF5	Del_5q12.1	0.92	1
SPTAN1	TP53	0.92	1
9p-Del	Amp_1p34.2	0.92	1
Amp_17q12	Del_22q13.32	0.92	1
ARID1A	RPTN	0.921	1
ARID1A	19q-Amp	0.921	1
ARID1A	Del_7q36.3	0.921	1
EP300	Del_11q23.3	0.921	1
ERCC2	Amp_11q13.3	0.921	1
STAG2	5p-Amp	0.921	1
TSC1	Amp_3p25.2	0.921	1
Amp_4q13.3	Amp_5p15.33	0.921	1
Amp_4q13.3	Del_18q23	0.921	1
CSMD3	14q-Del	0.922	1
HES1	Amp_20q11.21	0.922	1
9q-Del	Amp_7p21.1	0.922	1
ERBB2	Amp_13q22.1	0.923	1
ERBB2	Del_16q23.1	0.923	1
FBXW7	10q-Del	0.923	1
NFE2L2	5p-Amp	0.923	1
PARD3	20p-Amp	0.923	1
PARD3	Del_22q13.32	0.923	1
RHOA	Del_2q34	0.923	1
SPTAN1	Amp_7p21.1	0.923	1
STAG2	Del_3p14.2	0.923	1
6q-Del	Amp_1p34.2	0.923	1
ATM	18q-Del	0.924	1
ATM	Del_14q24.1	0.924	1
CDKN2A	Del_9p21.3	0.924	1
CUL1	Amp_11q13.3	0.924	1
METTL3	Amp_3q26.33	0.924	1
MLL	8q-Amp	0.924	1
NF1	PKHD1	0.924	1
RBM10	SPTAN1	0.924	1
RBM10	Amp_7p11.2	0.924	1
ARID1B	8p-Del	0.925	1
ASXL2	CDKN2A	0.925	1
ASXL2	RHOB	0.925	1
CDKN1A	Amp_7p11.2	0.925	1
CTNNB1	9q-Del	0.925	1
EP300	19q-Amp	0.925	1
NFE2L2	18q-Del	0.925	1
RHOA	Del_8p23.3	0.925	1
THRAP3	Del_5q12.1	0.925	1
19q-Amp	17p-Del	0.925	1
17p-Del	Amp_22q12.2	0.925	1
Amp_1p34.2	Del_9p23	0.925	1
ERBB2	Amp_11q13.3	0.926	1
KRAS	9p-Del	0.926	1
RB1	SPTAN1	0.926	1
RB1	Del_Xp11.3	0.926	1
Amp_11q13.3	Amp_19q12	0.926	1
CDKN1A	14q-Del	0.927	1
CREBBP	PSIP1	0.927	1
ERBB3	4q-Del	0.927	1
NFE2L2	Del_13q14.2	0.927	1
RXRA	TP53	0.927	1
RXRA	Del_13q14.2	0.927	1
ZBTB7B	Amp_1q21.3	0.927	1
7q-Amp	Del_11q25	0.927	1
CREBBP	Del_11p15.5	0.928	1
CTNNB1	8p-Del	0.928	1
FGFR3	MLL2	0.928	1
HLA-A	Amp_8q22.3	0.928	1
MLL	Del_12p13.1	0.928	1
NUDT11	Amp_8q22.3	0.928	1
TSC1	Del_6q27	0.928	1
20p-Amp	Del_4q22.1	0.928	1
CREBBP	PIK3CA	0.929	1
FAT1	20p-Amp	0.929	1
FAT1	Amp_6p22.3	0.929	1
FBXW7	TSC1	0.929	1
KDM6A	18q-Del	0.929	1
PARD3	RB1	0.929	1
PIK3CA	Amp_11q22.2	0.929	1
4q-Del	Amp_10p14	0.929	1
ELF3	Amp_19q13.43	0.93	1
GNA13	Amp_8q22.3	0.93	1
MBD1	Amp_3p25.2	0.93	1
METTL3	TP53	0.93	1
MLL	Del_2q22.1	0.93	1
NF1	10q-Del	0.93	1
SPTAN1	Amp_8q22.3	0.93	1
18q-Del	Amp_10p14	0.93	1
FBXW7	Amp_3q26.33	0.931	1
FGFR3	3p-Amp	0.931	1
FGFR3	Amp_7p21.1	0.931	1
MLL	17p-Del	0.931	1
STAG2	Amp_5p15.33	0.931	1
THRAP3	Amp_10p14	0.931	1
17p-Del	Amp_12q15	0.931	1
Amp_1p34.2	Amp_11q13.3	0.931	1
Amp_10p14	Del_1p36.11	0.931	1
ELF3	FAM47C	0.932	1
ELF3	RAI1	0.932	1
ERBB3	Del_11p15.5	0.932	1
FAM47C	Amp_17q23.3	0.932	1
PIK3CA	Amp_1q23.3	0.932	1
RBM10	Amp_17q23.3	0.932	1
TSC1	Del_13q14.2	0.932	1
ASXL2	Amp_7p11.2	0.933	1
CSMD3	FGFR3	0.933	1
CSMD3	STAG2	0.933	1
CSMD3	Del_16p13.3	0.933	1
ERBB2	Amp_8q22.3	0.933	1
FGFR3	Del_16p13.3	0.933	1
MLL3	Del_16p13.3	0.933	1
PARD3	SPTAN1	0.933	1
Amp_17q12	Del_2q37.1	0.933	1
DNAH6	Del_18q23	0.934	1
HRAS	Del_18q23	0.934	1
KDM6A	SPTAN1	0.934	1
KRAS	Del_2q37.1	0.934	1
MLL3	Del_6p25.3	0.934	1
PIK3CA	20p-Amp	0.934	1
Amp_12q15	Del_4q22.1	0.934	1
CDKN2A	11p-Del	0.935	1
CREBBP	Amp_19q13.43	0.935	1
CSMD3	9q-Del	0.935	1
ERBB3	NFE2L2	0.935	1
ERBB3	Amp_11q22.2	0.935	1
FBXW7	Amp_19q13.43	0.935	1
MLL	Del_9p21.3	0.935	1
RHOA	Del_10q23.31	0.935	1
SHANK1	Amp_3q26.33	0.935	1
SHANK1	Amp_11q13.3	0.935	1
20q-Amp	5p-Amp	0.935	1
ERCC2	9p-Del	0.936	1
FAT1	10q-Del	0.936	1
KLF5	Del_16q23.1	0.936	1
MLL	20q-Amp	0.936	1
PKHD1	10q-Del	0.936	1
RXRA	Del_9p23	0.936	1
4q-Del	Del_6p25.3	0.936	1
BCL2L1	TP53	0.937	1
CDKN1A	KDM6A	0.937	1
CDKN1A	Amp_17q23.3	0.937	1
CREBBP	FAM47C	0.937	1
CREBBP	Amp_17q23.3	0.937	1
DNAH6	11p-Del	0.937	1
DNAH6	17p-Del	0.937	1
FOXA1	Amp_1q23.3	0.937	1
HRAS	17p-Del	0.937	1
MLL2	3q-Amp	0.937	1
MLL2	6q-Del	0.937	1
TSC1	Amp_1q23.3	0.937	1
HLA-A	TP53	0.938	1
RAI1	Del_9p21.3	0.938	1
TSC1	Del_2q22.1	0.938	1
18q-Del	Amp_6p22.3	0.938	1
ERBB2	FGFR3	0.939	1
FAT1	7q-Amp	0.939	1
FAT1	15q-Del	0.939	1
MBD1	Del_9p21.3	0.939	1
MLL2	11p-Del	0.939	1
MLL2	9q-Del	0.939	1
NFE2L2	Amp_1q23.3	0.939	1
STAG2	Amp_19q12	0.939	1
20p-Amp	Del_13q14.2	0.939	1
7q-Amp	Del_11q23.3	0.939	1
CSMD3	FBXW7	0.94	1
CTNNB1	RB1	0.94	1
CTNNB1	9p-Del	0.94	1
ERBB2	RBM10	0.94	1
FAM47C	Amp_19q12	0.94	1
FOXQ1	RB1	0.94	1
KLF5	9p-Del	0.94	1
NFE2L2	20p-Amp	0.94	1
NFE2L2	Amp_10p14	0.94	1
PTEN	9p-Del	0.94	1
RB1	7p-Amp	0.94	1
RB1	Del_1p36.11	0.94	1
RXRA	Amp_10p14	0.94	1
20q-Amp	Del_13q14.2	0.94	1
8q-Amp	4p-Del	0.94	1
5q-Del	Amp_1p34.2	0.94	1
Amp_1p34.2	Del_19p13.3	0.94	1
ATM	Amp_4p16.3	0.941	1
CSMD3	18q-Del	0.941	1
EP300	Del_11p15.5	0.941	1
KLF5	Amp_7p11.2	0.941	1
NF1	Amp_19q13.43	0.941	1
PARD3	Amp_17q23.3	0.941	1
SPTAN1	7p-Amp	0.941	1
STAG2	18q-Del	0.941	1
THRAP3	Del_8p23.3	0.941	1
ZBTB7B	Del_9p23	0.941	1
1q-Amp	Del_8p23.3	0.941	1
9p-Del	Amp_16p13.2	0.941	1
CDKN1A	Amp_3p25.2	0.942	1
CREBBP	11q-Del	0.942	1
CSMD3	8p-Del	0.942	1
ERCC2	4p-Del	0.942	1
FAT1	Amp_7p11.2	0.942	1
FGFR3	SHANK1	0.942	1
RHOA	STAG2	0.942	1
RHOA	Del_16p13.3	0.942	1
SHANK1	STAG2	0.942	1
STAG2	8p-Del	0.942	1
TSC1	Amp_16p13.2	0.942	1
ZFP36L1	Del_5q12.1	0.942	1
11q-Del	Amp_7p21.1	0.942	1
TSC1	20q-Amp	0.943	1
TSC1	Del_11q23.3	0.943	1
ASXL2	Del_3p14.2	0.944	1
C3orf70	8q-Amp	0.944	1
CNOT1	Del_2q22.1	0.944	1
EP300	17p-Del	0.944	1
KIAA1267	Amp_13q22.1	0.944	1
KLF5	Del_17p12	0.944	1
MLL	NFE2L2	0.944	1
MLL	22q-Del	0.944	1
MLL	Amp_11q22.2	0.944	1
NFE2L2	Amp_13q22.1	0.944	1
15q-Del	Amp_6p22.3	0.944	1
22q-Del	Amp_12q15	0.944	1
Amp_4p16.3	Del_10q23.31	0.944	1
CREBBP	PARD3	0.945	1
FGFR3	Amp_8p11.21	0.945	1
KRAS	Amp_3p25.2	0.945	1
RB1	18q-Del	0.945	1
TSC1	Amp_10p14	0.945	1
TSC1	Del_8p23.3	0.945	1
ZFP36L1	8p-Del	0.945	1
ATM	Del_22q13.32	0.946	1
CDKN1A	NF1	0.946	1
ERBB3	Amp_10p14	0.946	1
18q-Del	Amp_12q15	0.946	1
9p-Del	Amp_10p14	0.946	1
Amp_11q13.3	Del_2q34	0.946	1
CDKN1A	Amp_19q12	0.947	1
CNOT1	20q-Amp	0.947	1
CUL1	11p-Del	0.947	1
CUL1	17p-Del	0.947	1
FOXA1	MLL3	0.947	1
MLL3	Del_1p36.11	0.947	1
TSC1	6q-Del	0.947	1
Amp_12q15	Del_13q14.2	0.947	1
Amp_16p13.2	Del_9p23	0.947	1
CTNNB1	Del_8p21.3	0.948	1
HRAS	9q-Del	0.948	1
HRAS	Del_5q12.1	0.948	1
MLL2	Amp_11q22.2	0.948	1
NF1	Amp_8p11.23	0.948	1
NFE2L2	SPTAN1	0.948	1
NFE2L2	Amp_7p11.2	0.948	1
RXRA	Amp_7p11.2	0.948	1
SPTAN1	16p-Del	0.948	1
TSC1	Del_2q34	0.948	1
TXNIP	9q-Del	0.948	1
MLL2	9p-Del	0.949	1
ARID1B	Del_2q37.1	0.95	1
CSMD3	Amp_4p16.3	0.95	1
CSMD3	Del_11p15.5	0.95	1
MLL	ZFP36L1	0.95	1
ZFP36L1	Amp_12q15	0.95	1
9p-Del	Amp_7p21.1	0.95	1
ARID1A	CUL1	0.951	1
C3orf70	Amp_5p15.33	0.951	1
ELF3	MLL2	0.951	1
FAT1	FGFR3	0.951	1
FAT1	STAG2	0.951	1
FAT1	8p-Del	0.951	1
HRAS	8p-Del	0.951	1
MLL	9q-Del	0.951	1
MLL	Del_5q12.1	0.951	1
9q-Del	Del_16q23.1	0.951	1
ARID1B	Amp_7p21.1	0.952	1
ARID1B	Del_6q27	0.952	1
ARID1B	Del_11q25	0.952	1
C3orf70	5p-Amp	0.952	1
HRAS	KDM6A	0.952	1
KLF5	Amp_7p21.1	0.952	1
KLF5	Del_11q25	0.952	1
METTL3	5p-Amp	0.952	1
PIK3CA	Amp_5p15.33	0.952	1
PIK3CA	Amp_7p11.2	0.952	1
3p-Amp	5p-Amp	0.952	1
7p-Amp	Del_11q25	0.952	1
Del_9p23	Del_16q23.1	0.952	1
CDKN2A	20p-Amp	0.953	1
CDKN2A	8p-Del	0.953	1
CREBBP	Del_18q23	0.953	1
KLF5	Amp_5p15.33	0.953	1
SPTAN1	Amp_5p15.33	0.953	1
ZBTB7B	Del_17p12	0.953	1
NFE2L2	Del_8p21.3	0.954	1
SPTAN1	Amp_22q12.2	0.954	1
ERBB3	4p-Del	0.955	1
FAT1	PARD3	0.955	1
FBXW7	8q-Amp	0.955	1
PARD3	20q-Amp	0.955	1
PARD3	Del_11q23.3	0.955	1
PKHD1	STAG2	0.955	1
EP300	SHANK1	0.956	1
FAT1	11q-Del	0.956	1
FAT1	Amp_10p14	0.956	1
KLF5	TP53	0.956	1
MLL	Amp_11q13.3	0.956	1
ASXL2	Amp_8p11.21	0.957	1
C3orf70	9q-Del	0.957	1
CUL1	9q-Del	0.957	1
DNAH6	Del_9p21.3	0.957	1
ERCC2	Del_9p23	0.957	1
FAM47C	Del_4q34.2	0.957	1
RB1	TSC1	0.957	1
9q-Del	Amp_7p11.2	0.957	1
ARID1A	HES1	0.958	1
ARID1B	Del_2q22.1	0.958	1
ATM	Del_2q37.1	0.958	1
CREBBP	11p-Del	0.958	1
CSMD3	15q-Del	0.958	1
FBXW7	18q-Del	0.958	1
FGFR3	7q-Amp	0.958	1
FGFR3	15q-Del	0.958	1
KLF5	Del_11p15.5	0.958	1
MLL3	16p-Del	0.958	1
MLL3	22q-Del	0.958	1
MLL3	Amp_11q22.2	0.958	1
NFE2L2	Amp_7p21.1	0.958	1
PSIP1	Amp_8p11.23	0.958	1
RXRA	Amp_7p21.1	0.958	1
11q-Del	Amp_8q22.3	0.958	1
9q-Del	Amp_10p14	0.958	1
Del_9p21.3	Del_22q13.32	0.958	1
ATM	TP53	0.959	1
CDKN2A	Amp_7p11.2	0.959	1
CREBBP	Del_11q23.3	0.959	1
MLL2	Amp_22q12.2	0.959	1
RBM10	Del_10q23.31	0.959	1
Amp_6p22.3	Del_9p23	0.959	1
Amp_7p21.1	Del_11q23.3	0.959	1
ASXL2	6q-Del	0.96	1
FGFR3	Del_15q13.1	0.96	1
HRAS	RB1	0.96	1
HRAS	9p-Del	0.96	1
TXNIP	9p-Del	0.96	1
ARID1A	20q-Amp	0.961	1
CSMD3	Del_8p23.3	0.961	1
ERBB2	KIAA1267	0.961	1
FAT1	KLF5	0.961	1
KLF5	Del_11q23.3	0.961	1
MLL	4p-Del	0.961	1
MLL2	Amp_12q15	0.961	1
MLL2	Del_6p25.3	0.961	1
RBM10	Amp_1q23.3	0.961	1
C3orf70	Amp_10p14	0.962	1
FBXW7	Amp_6p22.3	0.962	1
PIK3CA	Del_Xp11.3	0.962	1
SHANK1	Amp_5p15.33	0.962	1
ARID1A	Del_19p13.3	0.963	1
CREBBP	Amp_22q12.2	0.963	1
EP300	Amp_4p16.3	0.963	1
ERBB2	20q-Amp	0.963	1
HRAS	TP53	0.963	1
KLF5	Del_2q34	0.963	1
NFE2L2	Amp_8p11.21	0.963	1
PLCXD3	Del_9p21.3	0.963	1
ARID1A	9q-Del	0.964	1
CREBBP	18q-Del	0.964	1
FAM47C	FGFR3	0.964	1
FGFR3	Amp_13q22.1	0.964	1
FGFR3	Del_6p25.3	0.964	1
HRAS	Amp_1q23.3	0.964	1
STAG2	Amp_13q22.1	0.964	1
CDKN2A	RB1	0.965	1
CNOT1	Del_8p23.3	0.965	1
KRAS	Del_9p23	0.965	1
MLL	Del_6p25.3	0.965	1
PARD3	Amp_3q26.33	0.965	1
PARD3	Amp_11q13.3	0.965	1
SHANK1	9q-Del	0.965	1
19q-Amp	Amp_3p25.2	0.965	1
ATM	Del_16p13.3	0.966	1
DNAH6	Del_2q37.1	0.966	1
FAT1	Amp_11q22.2	0.966	1
MLL2	11q-Del	0.966	1
NFE2L2	Del_11p15.5	0.966	1
PKHD1	18q-Del	0.966	1
18q-Del	Amp_16p13.2	0.966	1
C3orf70	9p-Del	0.967	1
CNNM4	Del_9p21.3	0.967	1
CUL1	9p-Del	0.967	1
HRAS	Del_8p23.3	0.967	1
KDM6A	KLF5	0.967	1
METTL3	RB1	0.967	1
20p-Amp	Amp_1p34.2	0.967	1
FGFR3	Amp_5p15.33	0.968	1
NFE2L2	Del_2q34	0.968	1
RB1	5q-Del	0.968	1
ZFP36L1	Del_2q22.1	0.968	1
Del_9p21.3	Del_16q23.1	0.968	1
ARID1A	17q-Amp	0.969	1
ARID1B	Del_9p21.3	0.969	1
CDKN1A	Amp_3q26.33	0.969	1
ERCC2	9q-Del	0.969	1
FBXW7	Del_5q12.1	0.969	1
GNA13	Amp_5p15.33	0.969	1
7p-Amp	Del_9p21.3	0.969	1
11p-Del	Amp_5p15.33	0.969	1
Amp_5p15.33	Del_Xq21.33	0.969	1
ATM	CREBBP	0.97	1
CSMD3	Del_8p21.3	0.97	1
FGFR3	Amp_3q26.33	0.97	1
KLF5	Amp_3q26.33	0.97	1
NFE2L2	TP53	0.97	1
PARD3	Del_16p13.3	0.97	1
STAG2	Amp_3q26.33	0.97	1
STAG2	Amp_19q13.43	0.97	1
TP53	Amp_4p16.3	0.97	1
PIK3CA	1q-Amp	0.971	1
RPTN	Amp_6p22.3	0.971	1
10q-Del	Del_9p21.3	0.971	1
Amp_17q12	Del_19p13.3	0.971	1
EP300	Amp_10p14	0.972	1
FBXW7	TP53	0.972	1
FGFR3	Del_13q14.2	0.972	1
KDM6A	RHOA	0.972	1
SPTAN1	Amp_7p11.2	0.972	1
STAG2	Del_2q37.1	0.972	1
ATM	16p-Del	0.973	1
ATM	22q-Del	0.973	1
CDKN2A	Amp_8p11.21	0.973	1
CTNNB1	Del_9p23	0.973	1
PIK3CA	Amp_1p34.2	0.973	1
TSC1	Del_14q24.1	0.973	1
Amp_11q22.2	Del_4q34.2	0.973	1
ARID1A	20p-Amp	0.974	1
CDKN1A	Del_16p13.3	0.974	1
EP300	RBM10	0.974	1
FGFR3	7p-Amp	0.974	1
KDM6A	NFE2L2	0.974	1
KLF5	Del_16p13.3	0.974	1
NF1	Del_5q12.1	0.974	1
NFE2L2	Amp_20q11.21	0.974	1
PKHD1	5p-Amp	0.974	1
THRAP3	Del_9p21.3	0.974	1
ZBTB7B	Amp_1q23.3	0.974	1
11q-Del	Amp_8p11.23	0.974	1
CDKN2A	20q-Amp	0.975	1
CREBBP	Amp_3p25.2	0.975	1
ELF3	Del_16q23.1	0.975	1
FAT1	RHOB	0.975	1
FAT1	Del_8p23.3	0.975	1
ARID1A	CDKN2A	0.976	1
ERBB2	9q-Del	0.976	1
FBXW7	Amp_8q22.3	0.976	1
GNA13	KDM6A	0.976	1
PARD3	Del_9p23	0.976	1
STAG2	Amp_17q23.3	0.976	1
STAG2	Del_16p13.3	0.976	1
TXNIP	Amp_20q11.21	0.976	1
ATM	Amp_22q12.2	0.977	1
FAT1	5p-Amp	0.977	1
HRAS	Amp_6p22.3	0.977	1
MLL3	Del_13q14.2	0.977	1
NFE2L2	Amp_1q21.3	0.977	1
PIK3CA	Amp_4q13.3	0.977	1
Del_9p23	Del_13q14.2	0.977	1
CREBBP	Del_9p21.3	0.978	1
FGFR3	22q-Del	0.978	1
FGFR3	Amp_17q12	0.978	1
KIAA1267	Amp_8p11.23	0.978	1
MLL	11p-Del	0.978	1
PARD3	11p-Del	0.978	1
RB1	8q-Amp	0.978	1
RB1	Amp_4p16.3	0.978	1
RHOA	Del_2q37.1	0.978	1
RXRA	Amp_8p11.23	0.978	1
16p-Del	Del_9p21.3	0.978	1
9q-Del	Amp_8q22.3	0.978	1
KDM6A	Amp_4p16.3	0.979	1
KLF5	Del_8p23.3	0.979	1
PSIP1	Amp_10p14	0.979	1
RBM10	Del_13q14.2	0.979	1
UNC93B1	Del_9p21.3	0.979	1
Amp_1p34.2	Del_6q27	0.979	1
Amp_1p34.2	Del_11q25	0.979	1
ATM	Amp_20q11.21	0.98	1
CNOT1	9q-Del	0.98	1
ELF3	Amp_6p22.3	0.98	1
EP300	Del_9p21.3	0.98	1
ERBB2	Amp_10p14	0.98	1
RHOA	Del_9p21.3	0.98	1
TSC1	Del_22q13.32	0.98	1
CNOT1	8p-Del	0.981	1
CREBBP	Amp_20q11.21	0.981	1
CSMD3	ZFP36L1	0.981	1
ELF3	RB1	0.981	1
FGFR3	Amp_22q12.2	0.981	1
MLL3	Amp_8q22.3	0.981	1
RAI1	8p-Del	0.981	1
RB1	11p-Del	0.981	1
5p-Amp	Del_12p13.1	0.981	1
10q-Del	Amp_7p11.2	0.981	1
18q-Del	Amp_17q12	0.981	1
ARID1B	11p-Del	0.982	1
FBXW7	Amp_8p11.21	0.982	1
KDM6A	Amp_16p13.2	0.982	1
KDM6A	Del_Xp11.3	0.982	1
KLF5	17p-Del	0.982	1
MLL2	Del_9p23	0.982	1
PIK3CA	Amp_16p13.2	0.982	1
RAI1	Amp_5p15.33	0.982	1
ATM	14q-Del	0.983	1
CREBBP	9p-Del	0.983	1
ERBB3	11q-Del	0.983	1
KDM6A	RB1	0.983	1
RAI1	Amp_10p14	0.983	1
TP53	19q-Amp	0.983	1
Amp_5p15.33	Del_1p36.11	0.983	1
CREBBP	PKHD1	0.984	1
CSMD3	Del_2q22.1	0.984	1
MLL	Del_11q23.3	0.984	1
PARD3	9q-Del	0.984	1
PKHD1	Amp_7p21.1	0.984	1
PKHD1	Del_11q25	0.984	1
TXNIP	Del_9p23	0.984	1
Amp_16p13.2	Del_9p21.3	0.984	1
ARID1A	Amp_19q13.43	0.985	1
CDKN1A	Amp_8q22.3	0.985	1
ELF3	Del_15q13.1	0.985	1
KDM6A	Amp_5p15.33	0.985	1
SPTAN1	5p-Amp	0.985	1
17p-Del	Amp_11q22.2	0.985	1
Amp_6p22.3	Amp_11q13.3	0.985	1
CREBBP	Del_11q25	0.986	1
CSMD3	Del_11q23.3	0.986	1
KDM6A	10q-Del	0.986	1
MLL	11q-Del	0.986	1
MLL3	Amp_17q23.3	0.986	1
PARD3	Del_9p21.3	0.986	1
17p-Del	Amp_6p22.3	0.986	1
Amp_5p15.33	Del_12p13.1	0.986	1
Amp_7p11.2	Del_9p23	0.986	1
KLF5	8p-Del	0.987	1
MLL2	18q-Del	0.987	1
MLL3	Del_9p23	0.987	1
PKHD1	Del_2q22.1	0.987	1
TSC1	Del_3p14.2	0.987	1
ZFP36L1	17p-Del	0.987	1
11q-Del	Amp_7p11.2	0.987	1
Amp_1q23.3	Del_Xp11.3	0.987	1
ATM	Del_17p12	0.988	1
CSMD3	Del_2q34	0.988	1
ERBB2	8q-Amp	0.988	1
MLL2	Del_Xp11.3	0.988	1
TSC1	Amp_7p21.1	0.988	1
ATM	Amp_12q15	0.989	1
KRAS	TP53	0.989	1
RXRA	9q-Del	0.989	1
STAG2	Amp_6p22.3	0.989	1
TXNIP	Del_9p21.3	0.989	1
ZFP36L1	5p-Amp	0.989	1
DNAH6	TP53	0.99	1
FBXW7	FGFR3	0.99	1
HRAS	Amp_5p15.33	0.99	1
KDM6A	MLL2	0.99	1
ATM	FGFR3	0.991	1
ATM	Amp_10p14	0.991	1
CSMD3	Del_2q37.1	0.991	1
CSMD3	Del_22q13.32	0.991	1
CTNNB1	Del_8p23.3	0.991	1
ZFP36L1	9q-Del	0.991	1
9p-Del	Amp_6p22.3	0.991	1
ARID1A	NFE2L2	0.992	1
ATM	6q-Del	0.992	1
FAT1	KDM6A	0.992	1
FAT1	Amp_19q12	0.992	1
MLL	STAG2	0.992	1
MLL	18q-Del	0.992	1
NFE2L2	Amp_5p15.33	0.992	1
PIK3CA	Amp_11q13.3	0.992	1
STAG2	Amp_12q15	0.992	1
TSC1	Amp_8q22.3	0.992	1
TSC1	Del_2q37.1	0.992	1
ATM	Amp_17q23.3	0.993	1
CDKN1A	TP53	0.993	1
ELF3	Amp_10p14	0.993	1
FGFR3	Amp_7p11.2	0.993	1
MLL2	RBM10	0.993	1
SPTAN1	Del_16p13.3	0.993	1
9p-Del	Amp_7p11.2	0.993	1
ATM	Del_6q27	0.994	1
CREBBP	Amp_11q13.3	0.994	1
EP300	11p-Del	0.994	1
HES1	TP53	0.994	1
KLF5	Amp_3p25.2	0.994	1
RB1	Del_11p15.5	0.994	1
TP53	ZBTB7B	0.994	1
TP53	Del_9p23	0.994	1
TSC1	Del_10q23.31	0.994	1
ZFP36L1	9p-Del	0.994	1
FAT1	Amp_5p15.33	0.995	1
FBXW7	5p-Amp	0.995	1
KDM6A	Amp_10p14	0.995	1
RB1	Amp_11q13.3	0.995	1
TSC1	Del_16p13.3	0.995	1
ATM	Del_2q34	0.996	1
EP300	SPTAN1	0.996	1
ERCC2	Del_9p21.3	0.996	1
NF2	Del_9p21.3	0.996	1
NFE2L2	Amp_3p25.2	0.996	1
11p-Del	Amp_7p11.2	0.996	1
Amp_7p21.1	Del_9p21.3	0.996	1
FGFR3	Amp_6p22.3	0.997	1
MLL	Del_11q25	0.997	1
Amp_4q13.3	Del_9p21.3	0.997	1
ARID1B	Del_9p23	0.998	1
CDKN1A	8q-Amp	0.998	1
ELF3	Amp_19q12	0.998	1
FAT1	Amp_12q15	0.998	1
FAT1	Amp_13q22.1	0.998	1
FBXW7	Amp_5p15.33	0.998	1
Amp_5p15.33	Del_9p21.3	0.998	1
Amp_10p14	Del_9p21.3	0.998	1
ARID1A	FGFR3	0.999	1
FGFR3	MLL	0.999	1
FGFR3	8q-Amp	0.999	1
FGFR3	Amp_3p25.2	0.999	1
FGFR3	Amp_8q22.3	0.999	1
FGFR3	Del_22q13.32	0.999	1
RB1	Del_3p14.2	0.999	1
STAG2	Amp_7p11.2	0.999	1
STAG2	Amp_10p14	0.999	1
5p-Amp	Del_9p21.3	0.999	1
Del_9p21.3	Del_13q14.2	0.999	1
ARID1A	NRAS	1	1
ARID1A	19p-Del	1	1
ARID1B	BCL2L1	1	1
ARID1B	FGFR3	1	1
ARID1B	FOXA1	1	1
ARID1B	HLA-A	1	1
ARID1B	MBD1	1	1
ARID1B	NRAS	1	1
ARID1B	PTEN	1	1
ARID1B	RPTN	1	1
ARID1B	RUNX1	1	1
ARID1B	SCARF2	1	1
ARID1B	SPTAN1	1	1
ARID1B	ZNF185	1	1
ARID1B	19q-Amp	1	1
ARID1B	16p-Del	1	1
ARID1B	18q-Del	1	1
ARID1B	19p-Del	1	1
ARID1B	22q-Del	1	1
ARID1B	4p-Del	1	1
ARID1B	5q-Del	1	1
ARID1B	6q-Del	1	1
ARID1B	9p-Del	1	1
ARID1B	9q-Del	1	1
ARID1B	Amp_4p16.3	1	1
ARID1B	Del_1p36.11	1	1
ARID1B	Del_1q32.1	1	1
ARID1B	Del_3p14.2	1	1
ARID1B	Del_7q36.3	1	1
ARID1B	Del_22q13.32	1	1
ARID1B	Del_Xq21.33	1	1
ASXL2	GNA13	1	1
ASXL2	MBD1	1	1
ASXL2	SCARF2	1	1
ASXL2	THRAP3	1	1
ASXL2	19q-Amp	1	1
ASXL2	3p-Amp	1	1
ASXL2	15q-Del	1	1
ASXL2	Del_1p36.11	1	1
ASXL2	Del_7q36.3	1	1
ASXL2	Del_Xp11.3	1	1
ATM	BCL2L1	1	1
ATM	NUDT11	1	1
ATM	SCARF2	1	1
ATM	17q-Amp	1	1
ATM	20p-Amp	1	1
ATM	20q-Amp	1	1
BCL2L1	C3orf70	1	1
BCL2L1	CDKN1A	1	1
BCL2L1	CDKN2A	1	1
BCL2L1	CNNM4	1	1
BCL2L1	CNOT1	1	1
BCL2L1	CREBBP	1	1
BCL2L1	CTNNB1	1	1
BCL2L1	CUL1	1	1
BCL2L1	DNAH6	1	1
BCL2L1	EP300	1	1
BCL2L1	ERBB2	1	1
BCL2L1	FAT1	1	1
BCL2L1	FGFR3	1	1
BCL2L1	FOXQ1	1	1
BCL2L1	GNA13	1	1
BCL2L1	HES1	1	1
BCL2L1	HLA-A	1	1
BCL2L1	HRAS	1	1
BCL2L1	IDH1	1	1
BCL2L1	KDM6A	1	1
BCL2L1	KIAA1267	1	1
BCL2L1	KLF5	1	1
BCL2L1	KRAS	1	1
BCL2L1	MBD1	1	1
BCL2L1	METTL3	1	1
BCL2L1	NF2	1	1
BCL2L1	NFE2L2	1	1
BCL2L1	NRAS	1	1
BCL2L1	NUDT11	1	1
BCL2L1	PARD3	1	1
BCL2L1	PLCXD3	1	1
BCL2L1	PTEN	1	1
BCL2L1	RAI1	1	1
BCL2L1	RB1	1	1
BCL2L1	RPTN	1	1
BCL2L1	RUNX1	1	1
BCL2L1	RXRA	1	1
BCL2L1	SCARF2	1	1
BCL2L1	SF1	1	1
BCL2L1	SHANK1	1	1
BCL2L1	SPTAN1	1	1
BCL2L1	STAG2	1	1
BCL2L1	THRAP3	1	1
BCL2L1	TMCO4	1	1
BCL2L1	TSC1	1	1
BCL2L1	TXNIP	1	1
BCL2L1	UNC93B1	1	1
BCL2L1	ZBTB7B	1	1
BCL2L1	ZFP36L1	1	1
BCL2L1	17q-Amp	1	1
BCL2L1	19q-Amp	1	1
BCL2L1	1q-Amp	1	1
BCL2L1	3p-Amp	1	1
BCL2L1	3q-Amp	1	1
BCL2L1	10q-Del	1	1
BCL2L1	14q-Del	1	1
BCL2L1	15q-Del	1	1
BCL2L1	16p-Del	1	1
BCL2L1	19p-Del	1	1
BCL2L1	22q-Del	1	1
BCL2L1	6q-Del	1	1
BCL2L1	8p-Del	1	1
BCL2L1	Amp_1p34.2	1	1
BCL2L1	Amp_4p16.3	1	1
BCL2L1	Amp_4q13.3	1	1
BCL2L1	Amp_6q21	1	1
BCL2L1	Amp_8p11.21	1	1
BCL2L1	Amp_11q13.3	1	1
BCL2L1	Amp_11q22.2	1	1
BCL2L1	Amp_17q23.3	1	1
BCL2L1	Amp_19q13.43	1	1
BCL2L1	Amp_22q12.2	1	1
BCL2L1	Del_1p36.11	1	1
BCL2L1	Del_1q32.1	1	1
BCL2L1	Del_2q22.1	1	1
BCL2L1	Del_2q34	1	1
BCL2L1	Del_4q22.1	1	1
BCL2L1	Del_6p25.3	1	1
BCL2L1	Del_6q27	1	1
BCL2L1	Del_7q36.3	1	1
BCL2L1	Del_10q23.31	1	1
BCL2L1	Del_11q23.3	1	1
BCL2L1	Del_11q25	1	1
BCL2L1	Del_12p13.1	1	1
BCL2L1	Del_13q14.2	1	1
BCL2L1	Del_14q24.1	1	1
BCL2L1	Del_16p13.3	1	1
BCL2L1	Del_16q23.1	1	1
BCL2L1	Del_19p13.3	1	1
BCL2L1	Del_Xp11.3	1	1
BCL2L1	Del_Xq21.33	1	1
C3orf70	CNNM4	1	1
C3orf70	CTNNB1	1	1
C3orf70	CUL1	1	1
C3orf70	DNAH6	1	1
C3orf70	FOXA1	1	1
C3orf70	HLA-A	1	1
C3orf70	HRAS	1	1
C3orf70	NRAS	1	1
C3orf70	PLCXD3	1	1
C3orf70	PTEN	1	1
C3orf70	RPTN	1	1
C3orf70	SCARF2	1	1
C3orf70	SF1	1	1
C3orf70	ZFP36L1	1	1
C3orf70	17q-Amp	1	1
C3orf70	3p-Amp	1	1
C3orf70	7p-Amp	1	1
C3orf70	7q-Amp	1	1
C3orf70	16p-Del	1	1
C3orf70	18q-Del	1	1
C3orf70	19p-Del	1	1
C3orf70	22q-Del	1	1
C3orf70	Amp_4q13.3	1	1
C3orf70	Amp_6q21	1	1
C3orf70	Amp_7p21.1	1	1
C3orf70	Amp_7p11.2	1	1
C3orf70	Amp_22q12.2	1	1
C3orf70	Del_1p36.11	1	1
C3orf70	Del_12p13.1	1	1
C3orf70	Del_19p13.3	1	1
C3orf70	Del_22q13.32	1	1
CDKN1A	CNNM4	1	1
CDKN1A	HLA-A	1	1
CDKN1A	IDH1	1	1
CDKN1A	KRAS	1	1
CDKN1A	RPTN	1	1
CDKN1A	THRAP3	1	1
CDKN1A	UNC93B1	1	1
CDKN1A	ZFP36L1	1	1
CDKN1A	ZNF185	1	1
CDKN1A	17q-Amp	1	1
CDKN1A	Amp_4q13.3	1	1
CDKN1A	Amp_8p11.21	1	1
CDKN1A	Del_1p36.11	1	1
CDKN2A	HLA-A	1	1
CDKN2A	IDH1	1	1
CDKN2A	NRAS	1	1
CDKN2A	NUDT11	1	1
CDKN2A	RPTN	1	1
CDKN2A	SF1	1	1
CDKN2A	TMCO4	1	1
CDKN2A	1q-Amp	1	1
CDKN2A	19p-Del	1	1
CDKN2A	Amp_4q13.3	1	1
CDKN2A	Amp_12q15	1	1
CDKN2A	Amp_13q22.1	1	1
CDKN2A	Del_Xq21.33	1	1
CNNM4	CSMD3	1	1
CNNM4	FOXA1	1	1
CNNM4	GNA13	1	1
CNNM4	HES1	1	1
CNNM4	HLA-A	1	1
CNNM4	HRAS	1	1
CNNM4	IDH1	1	1
CNNM4	NF2	1	1
CNNM4	NFE2L2	1	1
CNNM4	NRAS	1	1
CNNM4	NUDT11	1	1
CNNM4	RBM10	1	1
CNNM4	RHOA	1	1
CNNM4	RHOB	1	1
CNNM4	RUNX1	1	1
CNNM4	RXRA	1	1
CNNM4	SF1	1	1
CNNM4	SHANK1	1	1
CNNM4	THRAP3	1	1
CNNM4	TMCO4	1	1
CNNM4	TSC1	1	1
CNNM4	TXNIP	1	1
CNNM4	UNC93B1	1	1
CNNM4	ZNF185	1	1
CNNM4	17q-Amp	1	1
CNNM4	1q-Amp	1	1
CNNM4	20p-Amp	1	1
CNNM4	20q-Amp	1	1
CNNM4	3p-Amp	1	1
CNNM4	3q-Amp	1	1
CNNM4	7p-Amp	1	1
CNNM4	10q-Del	1	1
CNNM4	11p-Del	1	1
CNNM4	15q-Del	1	1
CNNM4	17p-Del	1	1
CNNM4	19p-Del	1	1
CNNM4	4p-Del	1	1
CNNM4	4q-Del	1	1
CNNM4	Amp_11q22.2	1	1
CNNM4	Amp_16p13.2	1	1
CNNM4	Del_1p36.11	1	1
CNNM4	Del_4q22.1	1	1
CNNM4	Del_6p25.3	1	1
CNNM4	Del_7q36.3	1	1
CNNM4	Del_12p13.1	1	1
CNNM4	Del_Xq21.33	1	1
CNOT1	CTNNB1	1	1
CNOT1	ELF3	1	1
CNOT1	FOXA1	1	1
CNOT1	HLA-A	1	1
CNOT1	HRAS	1	1
CNOT1	KRAS	1	1
CNOT1	NUDT11	1	1
CNOT1	PLCXD3	1	1
CNOT1	RPTN	1	1
CNOT1	RUNX1	1	1
CNOT1	SF1	1	1
CNOT1	TMCO4	1	1
CNOT1	UNC93B1	1	1
CNOT1	ZBTB7B	1	1
CNOT1	1q-Amp	1	1
CNOT1	20p-Amp	1	1
CNOT1	7q-Amp	1	1
CNOT1	10q-Del	1	1
CNOT1	16p-Del	1	1
CNOT1	19p-Del	1	1
CNOT1	4p-Del	1	1
CNOT1	4q-Del	1	1
CNOT1	Amp_6q21	1	1
CNOT1	Amp_22q12.2	1	1
CNOT1	Del_4q22.1	1	1
CNOT1	Del_7q36.3	1	1
CNOT1	Del_12p13.1	1	1
CNOT1	Del_16p13.3	1	1
CNOT1	Del_Xp11.3	1	1
CREBBP	DNAH6	1	1
CREBBP	HES1	1	1
CREBBP	HLA-A	1	1
CREBBP	HRAS	1	1
CREBBP	PLCXD3	1	1
CREBBP	SF1	1	1
CREBBP	TMCO4	1	1
CREBBP	Del_Xq21.33	1	1
CSMD3	HRAS	1	1
CSMD3	SCARF2	1	1
CSMD3	22q-Del	1	1
CTNNB1	CUL1	1	1
CTNNB1	DNAH6	1	1
CTNNB1	ELF3	1	1
CTNNB1	FAM47C	1	1
CTNNB1	FGFR3	1	1
CTNNB1	FOXQ1	1	1
CTNNB1	GNA13	1	1
CTNNB1	HLA-A	1	1
CTNNB1	IDH1	1	1
CTNNB1	KIAA1267	1	1
CTNNB1	MBD1	1	1
CTNNB1	NF2	1	1
CTNNB1	NFE2L2	1	1
CTNNB1	NRAS	1	1
CTNNB1	NUDT11	1	1
CTNNB1	PKHD1	1	1
CTNNB1	PLCXD3	1	1
CTNNB1	PSIP1	1	1
CTNNB1	RBM10	1	1
CTNNB1	RHOB	1	1
CTNNB1	RPTN	1	1
CTNNB1	SPTAN1	1	1
CTNNB1	TSC1	1	1
CTNNB1	UNC93B1	1	1
CTNNB1	ZBTB7B	1	1
CTNNB1	ZNF185	1	1
CTNNB1	3p-Amp	1	1
CTNNB1	10q-Del	1	1
CTNNB1	14q-Del	1	1
CTNNB1	15q-Del	1	1
CTNNB1	17p-Del	1	1
CTNNB1	18q-Del	1	1
CTNNB1	19p-Del	1	1
CTNNB1	22q-Del	1	1
CTNNB1	4p-Del	1	1
CTNNB1	4q-Del	1	1
CTNNB1	5q-Del	1	1
CTNNB1	Amp_1p34.2	1	1
CTNNB1	Amp_4p16.3	1	1
CTNNB1	Amp_4q13.3	1	1
CTNNB1	Amp_6q21	1	1
CTNNB1	Del_1p36.11	1	1
CTNNB1	Del_7q36.3	1	1
CTNNB1	Del_10q23.31	1	1
CTNNB1	Del_15q13.1	1	1
CTNNB1	Del_18q23	1	1
CTNNB1	Del_19p13.3	1	1
CTNNB1	Del_Xp11.3	1	1
CUL1	DNAH6	1	1
CUL1	FBXW7	1	1
CUL1	FOXA1	1	1
CUL1	GNA13	1	1
CUL1	HRAS	1	1
CUL1	IDH1	1	1
CUL1	KLF5	1	1
CUL1	MBD1	1	1
CUL1	METTL3	1	1
CUL1	NUDT11	1	1
CUL1	PARD3	1	1
CUL1	PKHD1	1	1
CUL1	RBM10	1	1
CUL1	RHOA	1	1
CUL1	RUNX1	1	1
CUL1	RXRA	1	1
CUL1	SCARF2	1	1
CUL1	SF1	1	1
CUL1	SHANK1	1	1
CUL1	STAG2	1	1
CUL1	THRAP3	1	1
CUL1	TMCO4	1	1
CUL1	UNC93B1	1	1
CUL1	ZBTB7B	1	1
CUL1	ZNF185	1	1
CUL1	1q-Amp	1	1
CUL1	7p-Amp	1	1
CUL1	7q-Amp	1	1
CUL1	11q-Del	1	1
CUL1	19p-Del	1	1
CUL1	4p-Del	1	1
CUL1	Amp_4q13.3	1	1
CUL1	Amp_7p21.1	1	1
CUL1	Amp_7p11.2	1	1
CUL1	Amp_8p11.21	1	1
CUL1	Amp_22q12.2	1	1
CUL1	Del_2q22.1	1	1
CUL1	Del_7q36.3	1	1
CUL1	Del_11q23.3	1	1
CUL1	Del_11q25	1	1
CUL1	Del_12p13.1	1	1
CUL1	Del_Xp11.3	1	1
CUL1	Del_Xq21.33	1	1
DNAH6	FBXW7	1	1
DNAH6	FOXA1	1	1
DNAH6	GNA13	1	1
DNAH6	HLA-A	1	1
DNAH6	HRAS	1	1
DNAH6	KRAS	1	1
DNAH6	MBD1	1	1
DNAH6	NF2	1	1
DNAH6	NFE2L2	1	1
DNAH6	NUDT11	1	1
DNAH6	PLCXD3	1	1
DNAH6	PTEN	1	1
DNAH6	RBM10	1	1
DNAH6	RHOB	1	1
DNAH6	RUNX1	1	1
DNAH6	SF1	1	1
DNAH6	UNC93B1	1	1
DNAH6	ZNF185	1	1
DNAH6	20p-Amp	1	1
DNAH6	20q-Amp	1	1
DNAH6	3p-Amp	1	1
DNAH6	3q-Amp	1	1
DNAH6	7p-Amp	1	1
DNAH6	7q-Amp	1	1
DNAH6	8q-Amp	1	1
DNAH6	11q-Del	1	1
DNAH6	19p-Del	1	1
DNAH6	4p-Del	1	1
DNAH6	4q-Del	1	1
DNAH6	Amp_6q21	1	1
DNAH6	Amp_11q22.2	1	1
DNAH6	Amp_13q22.1	1	1
DNAH6	Del_1p36.11	1	1
DNAH6	Del_1q32.1	1	1
DNAH6	Del_7q36.3	1	1
DNAH6	Del_12p13.1	1	1
DNAH6	Del_19p13.3	1	1
DNAH6	Del_Xp11.3	1	1
ELF3	IDH1	1	1
ELF3	NF2	1	1
ELF3	NUDT11	1	1
ELF3	PLCXD3	1	1
ELF3	PTEN	1	1
ELF3	SCARF2	1	1
ELF3	UNC93B1	1	1
ELF3	ZNF185	1	1
EP300	IDH1	1	1
EP300	SCARF2	1	1
EP300	1q-Amp	1	1
EP300	Del_1q32.1	1	1
ERBB2	HRAS	1	1
ERBB2	NRAS	1	1
ERBB2	NUDT11	1	1
ERBB3	HES1	1	1
ERBB3	HLA-A	1	1
ERBB3	KLF5	1	1
ERBB3	MBD1	1	1
ERBB3	NF2	1	1
ERBB3	SF1	1	1
ERBB3	ZBTB7B	1	1
ERBB3	ZNF185	1	1
ERBB3	19p-Del	1	1
ERBB3	Amp_4p16.3	1	1
ERBB3	Amp_6q21	1	1
ERCC2	HLA-A	1	1
ERCC2	KRAS	1	1
ERCC2	NRAS	1	1
ERCC2	NUDT11	1	1
ERCC2	RHOA	1	1
ERCC2	UNC93B1	1	1
ERCC2	19q-Amp	1	1
ERCC2	4q-Del	1	1
ERCC2	Del_1p36.11	1	1
FAM47C	FOXA1	1	1
FAM47C	HLA-A	1	1
FAM47C	HRAS	1	1
FAM47C	KRAS	1	1
FAM47C	NF2	1	1
FAM47C	NRAS	1	1
FAM47C	NUDT11	1	1
FAM47C	PTEN	1	1
FAM47C	RBM10	1	1
FAM47C	RUNX1	1	1
FAM47C	RXRA	1	1
FAM47C	SCARF2	1	1
FAM47C	SF1	1	1
FAM47C	TSC1	1	1
FAM47C	17q-Amp	1	1
FAM47C	19q-Amp	1	1
FAM47C	3p-Amp	1	1
FAM47C	3q-Amp	1	1
FAM47C	18q-Del	1	1
FAM47C	19p-Del	1	1
FAM47C	4p-Del	1	1
FAM47C	4q-Del	1	1
FAM47C	Amp_4q13.3	1	1
FAM47C	Del_1q32.1	1	1
FAM47C	Del_12p13.1	1	1
FAT1	HES1	1	1
FAT1	HLA-A	1	1
FAT1	KRAS	1	1
FAT1	PTEN	1	1
FAT1	SF1	1	1
FAT1	19p-Del	1	1
FAT1	Amp_6q21	1	1
FAT1	Del_Xq21.33	1	1
FBXW7	FOXA1	1	1
FBXW7	GNA13	1	1
FBXW7	KRAS	1	1
FBXW7	NRAS	1	1
FBXW7	NUDT11	1	1
FBXW7	PLCXD3	1	1
FBXW7	RHOA	1	1
FBXW7	UNC93B1	1	1
FBXW7	17q-Amp	1	1
FBXW7	19q-Amp	1	1
FBXW7	15q-Del	1	1
FBXW7	19p-Del	1	1
FBXW7	4p-Del	1	1
FBXW7	4q-Del	1	1
FBXW7	Amp_1p34.2	1	1
FBXW7	Amp_6q21	1	1
FBXW7	Amp_17q23.3	1	1
FBXW7	Amp_19q12	1	1
FBXW7	Del_1q32.1	1	1
FBXW7	Del_19p13.3	1	1
FGFR3	FOXQ1	1	1
FGFR3	HRAS	1	1
FGFR3	IDH1	1	1
FGFR3	METTL3	1	1
FGFR3	NF2	1	1
FGFR3	PARD3	1	1
FGFR3	PLCXD3	1	1
FGFR3	PTEN	1	1
FGFR3	RB1	1	1
FGFR3	RUNX1	1	1
FGFR3	TP53	1	1
FGFR3	UNC93B1	1	1
FGFR3	ZNF185	1	1
FGFR3	Amp_1p34.2	1	1
FGFR3	Amp_4q13.3	1	1
FGFR3	Amp_6q21	1	1
FGFR3	Amp_10p14	1	1
FGFR3	Amp_16p13.2	1	1
FOXA1	FOXQ1	1	1
FOXA1	GNA13	1	1
FOXA1	HES1	1	1
FOXA1	IDH1	1	1
FOXA1	KRAS	1	1
FOXA1	MBD1	1	1
FOXA1	METTL3	1	1
FOXA1	NF2	1	1
FOXA1	NRAS	1	1
FOXA1	NUDT11	1	1
FOXA1	PLCXD3	1	1
FOXA1	RAI1	1	1
FOXA1	RPTN	1	1
FOXA1	RUNX1	1	1
FOXA1	RXRA	1	1
FOXA1	SCARF2	1	1
FOXA1	SF1	1	1
FOXA1	SPTAN1	1	1
FOXA1	TMCO4	1	1
FOXA1	TXNIP	1	1
FOXA1	UNC93B1	1	1
FOXA1	ZBTB7B	1	1
FOXA1	ZNF185	1	1
FOXA1	19q-Amp	1	1
FOXA1	14q-Del	1	1
FOXA1	15q-Del	1	1
FOXA1	4p-Del	1	1
FOXA1	4q-Del	1	1
FOXA1	Amp_1p34.2	1	1
FOXA1	Amp_4p16.3	1	1
FOXA1	Amp_6q21	1	1
FOXA1	Amp_11q22.2	1	1
FOXA1	Del_1p36.11	1	1
FOXA1	Del_7q36.3	1	1
FOXA1	Del_14q24.1	1	1
FOXA1	Del_15q13.1	1	1
FOXA1	Del_Xp11.3	1	1
FOXQ1	GNA13	1	1
FOXQ1	HLA-A	1	1
FOXQ1	IDH1	1	1
FOXQ1	METTL3	1	1
FOXQ1	NF2	1	1
FOXQ1	NUDT11	1	1
FOXQ1	PTEN	1	1
FOXQ1	RUNX1	1	1
FOXQ1	SCARF2	1	1
FOXQ1	SF1	1	1
FOXQ1	SPTAN1	1	1
FOXQ1	TMCO4	1	1
FOXQ1	TXNIP	1	1
FOXQ1	UNC93B1	1	1
FOXQ1	ZFP36L1	1	1
FOXQ1	ZNF185	1	1
FOXQ1	7q-Amp	1	1
FOXQ1	10q-Del	1	1
FOXQ1	11q-Del	1	1
FOXQ1	15q-Del	1	1
FOXQ1	16p-Del	1	1
FOXQ1	22q-Del	1	1
FOXQ1	5q-Del	1	1
FOXQ1	Amp_1p34.2	1	1
FOXQ1	Amp_4p16.3	1	1
FOXQ1	Amp_4q13.3	1	1
FOXQ1	Amp_12q15	1	1
FOXQ1	Amp_22q12.2	1	1
FOXQ1	Del_1p36.11	1	1
FOXQ1	Del_15q13.1	1	1
FOXQ1	Del_19p13.3	1	1
FOXQ1	Del_22q13.32	1	1
FOXQ1	Del_Xq21.33	1	1
GNA13	HES1	1	1
GNA13	HLA-A	1	1
GNA13	HRAS	1	1
GNA13	IDH1	1	1
GNA13	KRAS	1	1
GNA13	MLL	1	1
GNA13	NF2	1	1
GNA13	NRAS	1	1
GNA13	NUDT11	1	1
GNA13	PLCXD3	1	1
GNA13	PTEN	1	1
GNA13	RBM10	1	1
GNA13	RHOA	1	1
GNA13	RPTN	1	1
GNA13	SCARF2	1	1
GNA13	SF1	1	1
GNA13	ZBTB7B	1	1
GNA13	ZNF185	1	1
GNA13	17q-Amp	1	1
GNA13	1q-Amp	1	1
GNA13	20p-Amp	1	1
GNA13	20q-Amp	1	1
GNA13	3p-Amp	1	1
GNA13	7p-Amp	1	1
GNA13	7q-Amp	1	1
GNA13	8q-Amp	1	1
GNA13	19p-Del	1	1
GNA13	4q-Del	1	1
GNA13	Amp_3p25.2	1	1
GNA13	Amp_4p16.3	1	1
GNA13	Amp_4q13.3	1	1
GNA13	Amp_6q21	1	1
GNA13	Amp_7p21.1	1	1
GNA13	Amp_7p11.2	1	1
GNA13	Amp_11q22.2	1	1
GNA13	Amp_17q12	1	1
GNA13	Del_1p36.11	1	1
GNA13	Del_1q32.1	1	1
GNA13	Del_2q22.1	1	1
GNA13	Del_7q36.3	1	1
GNA13	Del_11q23.3	1	1
GNA13	Del_12p13.1	1	1
GNA13	Del_16q23.1	1	1
HES1	IDH1	1	1
HES1	KIAA1267	1	1
HES1	KRAS	1	1
HES1	NF1	1	1
HES1	NRAS	1	1
HES1	NUDT11	1	1
HES1	PLCXD3	1	1
HES1	SPTAN1	1	1
HES1	THRAP3	1	1
HES1	TMCO4	1	1
HES1	TXNIP	1	1
HES1	UNC93B1	1	1
HES1	ZNF185	1	1
HES1	1q-Amp	1	1
HES1	20q-Amp	1	1
HES1	3p-Amp	1	1
HES1	7p-Amp	1	1
HES1	7q-Amp	1	1
HES1	10q-Del	1	1
HES1	11p-Del	1	1
HES1	11q-Del	1	1
HES1	14q-Del	1	1
HES1	15q-Del	1	1
HES1	17p-Del	1	1
HES1	19p-Del	1	1
HES1	22q-Del	1	1
HES1	4p-Del	1	1
HES1	4q-Del	1	1
HES1	5q-Del	1	1
HES1	Amp_1p34.2	1	1
HES1	Amp_4p16.3	1	1
HES1	Amp_4q13.3	1	1
HES1	Amp_6q21	1	1
HES1	Amp_7p21.1	1	1
HES1	Amp_8p11.23	1	1
HES1	Amp_8p11.21	1	1
HES1	Amp_11q13.3	1	1
HES1	Amp_11q22.2	1	1
HES1	Amp_22q12.2	1	1
HES1	Del_1p36.11	1	1
HES1	Del_1q32.1	1	1
HES1	Del_2q22.1	1	1
HES1	Del_3p14.2	1	1
HES1	Del_4q22.1	1	1
HES1	Del_7q36.3	1	1
HES1	Del_10q23.31	1	1
HES1	Del_11q25	1	1
HES1	Del_14q24.1	1	1
HES1	Del_19p13.3	1	1
HES1	Del_Xp11.3	1	1
HLA-A	HRAS	1	1
HLA-A	IDH1	1	1
HLA-A	KDM6A	1	1
HLA-A	KIAA1267	1	1
HLA-A	KRAS	1	1
HLA-A	MBD1	1	1
HLA-A	METTL3	1	1
HLA-A	NF2	1	1
HLA-A	NFE2L2	1	1
HLA-A	NRAS	1	1
HLA-A	PLCXD3	1	1
HLA-A	PSIP1	1	1
HLA-A	RAI1	1	1
HLA-A	RB1	1	1
HLA-A	RHOA	1	1
HLA-A	RHOB	1	1
HLA-A	RUNX1	1	1
HLA-A	RXRA	1	1
HLA-A	SCARF2	1	1
HLA-A	SF1	1	1
HLA-A	THRAP3	1	1
HLA-A	TMCO4	1	1
HLA-A	TXNIP	1	1
HLA-A	UNC93B1	1	1
HLA-A	ZBTB7B	1	1
HLA-A	ZFP36L1	1	1
HLA-A	ZNF185	1	1
HLA-A	17q-Amp	1	1
HLA-A	19q-Amp	1	1
HLA-A	1q-Amp	1	1
HLA-A	20p-Amp	1	1
HLA-A	3p-Amp	1	1
HLA-A	3q-Amp	1	1
HLA-A	5p-Amp	1	1
HLA-A	7p-Amp	1	1
HLA-A	7q-Amp	1	1
HLA-A	8q-Amp	1	1
HLA-A	19p-Del	1	1
HLA-A	22q-Del	1	1
HLA-A	Amp_3q26.33	1	1
HLA-A	Amp_4q13.3	1	1
HLA-A	Amp_7p11.2	1	1
HLA-A	Amp_8p11.23	1	1
HLA-A	Amp_8p11.21	1	1
HLA-A	Amp_10p14	1	1
HLA-A	Amp_11q13.3	1	1
HLA-A	Amp_11q22.2	1	1
HLA-A	Amp_13q22.1	1	1
HLA-A	Amp_16p13.2	1	1
HLA-A	Amp_19q13.43	1	1
HLA-A	Amp_22q12.2	1	1
HLA-A	Del_1q32.1	1	1
HLA-A	Del_2q34	1	1
HLA-A	Del_3p14.2	1	1
HLA-A	Del_4q34.2	1	1
HLA-A	Del_5q12.1	1	1
HLA-A	Del_6p25.3	1	1
HLA-A	Del_6q27	1	1
HLA-A	Del_7q36.3	1	1
HLA-A	Del_8p21.3	1	1
HLA-A	Del_10q23.31	1	1
HLA-A	Del_11p15.5	1	1
HLA-A	Del_11q25	1	1
HLA-A	Del_12p13.1	1	1
HLA-A	Del_13q14.2	1	1
HLA-A	Del_14q24.1	1	1
HLA-A	Del_15q13.1	1	1
HLA-A	Del_16p13.3	1	1
HLA-A	Del_18q23	1	1
HLA-A	Del_19p13.3	1	1
HLA-A	Del_Xq21.33	1	1
HRAS	IDH1	1	1
HRAS	KLF5	1	1
HRAS	KRAS	1	1
HRAS	MBD1	1	1
HRAS	NF2	1	1
HRAS	NFE2L2	1	1
HRAS	NRAS	1	1
HRAS	NUDT11	1	1
HRAS	PARD3	1	1
HRAS	PLCXD3	1	1
HRAS	PTEN	1	1
HRAS	RBM10	1	1
HRAS	RHOB	1	1
HRAS	RPTN	1	1
HRAS	SCARF2	1	1
HRAS	SPTAN1	1	1
HRAS	TMCO4	1	1
HRAS	TSC1	1	1
HRAS	TXNIP	1	1
HRAS	UNC93B1	1	1
HRAS	ZBTB7B	1	1
HRAS	ZNF185	1	1
HRAS	19q-Amp	1	1
HRAS	1q-Amp	1	1
HRAS	5p-Amp	1	1
HRAS	7q-Amp	1	1
HRAS	10q-Del	1	1
HRAS	11p-Del	1	1
HRAS	14q-Del	1	1
HRAS	15q-Del	1	1
HRAS	19p-Del	1	1
HRAS	22q-Del	1	1
HRAS	5q-Del	1	1
HRAS	6q-Del	1	1
HRAS	Amp_1p34.2	1	1
HRAS	Amp_4p16.3	1	1
HRAS	Amp_6q21	1	1
HRAS	Amp_11q22.2	1	1
HRAS	Amp_13q22.1	1	1
HRAS	Amp_16p13.2	1	1
HRAS	Amp_19q12	1	1
HRAS	Amp_22q12.2	1	1
HRAS	Del_1p36.11	1	1
HRAS	Del_1q32.1	1	1
HRAS	Del_2q34	1	1
HRAS	Del_4q22.1	1	1
HRAS	Del_4q34.2	1	1
HRAS	Del_6q27	1	1
HRAS	Del_7q36.3	1	1
HRAS	Del_10q23.31	1	1
HRAS	Del_11p15.5	1	1
HRAS	Del_13q14.2	1	1
HRAS	Del_15q13.1	1	1
HRAS	Del_19p13.3	1	1
HRAS	Del_Xp11.3	1	1
HRAS	Del_Xq21.33	1	1
IDH1	KDM6A	1	1
IDH1	KIAA1267	1	1
IDH1	KRAS	1	1
IDH1	NF2	1	1
IDH1	NRAS	1	1
IDH1	NUDT11	1	1
IDH1	PLCXD3	1	1
IDH1	PTEN	1	1
IDH1	RHOA	1	1
IDH1	RUNX1	1	1
IDH1	SCARF2	1	1
IDH1	SF1	1	1
IDH1	SHANK1	1	1
IDH1	TSC1	1	1
IDH1	TXNIP	1	1
IDH1	UNC93B1	1	1
IDH1	ZBTB7B	1	1
IDH1	ZNF185	1	1
IDH1	17q-Amp	1	1
IDH1	19q-Amp	1	1
IDH1	3p-Amp	1	1
IDH1	7p-Amp	1	1
IDH1	7q-Amp	1	1
IDH1	14q-Del	1	1
IDH1	16p-Del	1	1
IDH1	18q-Del	1	1
IDH1	22q-Del	1	1
IDH1	4p-Del	1	1
IDH1	4q-Del	1	1
IDH1	5q-Del	1	1
IDH1	6q-Del	1	1
IDH1	8p-Del	1	1
IDH1	9p-Del	1	1
IDH1	9q-Del	1	1
IDH1	Amp_6q21	1	1
IDH1	Amp_19q13.43	1	1
IDH1	Del_1p36.11	1	1
IDH1	Del_2q34	1	1
IDH1	Del_2q37.1	1	1
IDH1	Del_4q22.1	1	1
IDH1	Del_5q12.1	1	1
IDH1	Del_6p25.3	1	1
IDH1	Del_6q27	1	1
IDH1	Del_7q36.3	1	1
IDH1	Del_8p23.3	1	1
IDH1	Del_8p21.3	1	1
IDH1	Del_12p13.1	1	1
IDH1	Del_14q24.1	1	1
IDH1	Del_Xp11.3	1	1
KDM6A	NF2	1	1
KIAA1267	KLF5	1	1
KIAA1267	MBD1	1	1
KIAA1267	NUDT11	1	1
KIAA1267	PLCXD3	1	1
KIAA1267	RHOA	1	1
KIAA1267	RPTN	1	1
KIAA1267	ZBTB7B	1	1
KIAA1267	ZNF185	1	1
KIAA1267	17q-Amp	1	1
KIAA1267	3p-Amp	1	1
KIAA1267	3q-Amp	1	1
KIAA1267	15q-Del	1	1
KIAA1267	19p-Del	1	1
KIAA1267	Amp_1p34.2	1	1
KIAA1267	Amp_4q13.3	1	1
KIAA1267	Amp_6q21	1	1
KIAA1267	Amp_17q12	1	1
KIAA1267	Amp_19q13.43	1	1
KIAA1267	Del_1p36.11	1	1
KIAA1267	Del_12p13.1	1	1
KIAA1267	Del_Xp11.3	1	1
KIAA1267	Del_Xq21.33	1	1
KLF5	NF2	1	1
KLF5	NRAS	1	1
KLF5	NUDT11	1	1
KLF5	PLCXD3	1	1
KLF5	PTEN	1	1
KLF5	RAI1	1	1
KLF5	RBM10	1	1
KLF5	RHOA	1	1
KLF5	RPTN	1	1
KLF5	RUNX1	1	1
KLF5	SF1	1	1
KLF5	TMCO4	1	1
KLF5	UNC93B1	1	1
KLF5	19q-Amp	1	1
KLF5	3p-Amp	1	1
KLF5	10q-Del	1	1
KLF5	15q-Del	1	1
KLF5	16p-Del	1	1
KLF5	4q-Del	1	1
KLF5	9q-Del	1	1
KLF5	Amp_1p34.2	1	1
KLF5	Amp_6q21	1	1
KLF5	Amp_16p13.2	1	1
KLF5	Amp_19q13.43	1	1
KLF5	Del_1p36.11	1	1
KLF5	Del_1q32.1	1	1
KLF5	Del_3p14.2	1	1
KLF5	Del_4q34.2	1	1
KLF5	Del_Xp11.3	1	1
KRAS	MBD1	1	1
KRAS	METTL3	1	1
KRAS	NF1	1	1
KRAS	NF2	1	1
KRAS	NRAS	1	1
KRAS	PKHD1	1	1
KRAS	PLCXD3	1	1
KRAS	PSIP1	1	1
KRAS	RAI1	1	1
KRAS	RBM10	1	1
KRAS	RHOA	1	1
KRAS	RPTN	1	1
KRAS	SCARF2	1	1
KRAS	SHANK1	1	1
KRAS	SPTAN1	1	1
KRAS	THRAP3	1	1
KRAS	TMCO4	1	1
KRAS	TXNIP	1	1
KRAS	UNC93B1	1	1
KRAS	ZBTB7B	1	1
KRAS	20p-Amp	1	1
KRAS	20q-Amp	1	1
KRAS	7p-Amp	1	1
KRAS	7q-Amp	1	1
KRAS	11q-Del	1	1
KRAS	14q-Del	1	1
KRAS	18q-Del	1	1
KRAS	22q-Del	1	1
KRAS	4p-Del	1	1
KRAS	6q-Del	1	1
KRAS	9q-Del	1	1
KRAS	Amp_4q13.3	1	1
KRAS	Amp_6q21	1	1
KRAS	Amp_7p21.1	1	1
KRAS	Amp_7p11.2	1	1
KRAS	Amp_20q11.21	1	1
KRAS	Amp_22q12.2	1	1
KRAS	Del_1p36.11	1	1
KRAS	Del_3p14.2	1	1
KRAS	Del_5q12.1	1	1
KRAS	Del_6p25.3	1	1
KRAS	Del_6q27	1	1
KRAS	Del_7q36.3	1	1
KRAS	Del_11q23.3	1	1
KRAS	Del_11q25	1	1
KRAS	Del_14q24.1	1	1
KRAS	Del_15q13.1	1	1
KRAS	Del_19p13.3	1	1
KRAS	Del_22q13.32	1	1
KRAS	Del_Xp11.3	1	1
KRAS	Del_Xq21.33	1	1
MBD1	MLL	1	1
MBD1	NF2	1	1
MBD1	NFE2L2	1	1
MBD1	NRAS	1	1
MBD1	NUDT11	1	1
MBD1	PLCXD3	1	1
MBD1	PTEN	1	1
MBD1	RBM10	1	1
MBD1	RXRA	1	1
MBD1	SCARF2	1	1
MBD1	SF1	1	1
MBD1	THRAP3	1	1
MBD1	TXNIP	1	1
MBD1	UNC93B1	1	1
MBD1	17q-Amp	1	1
MBD1	19q-Amp	1	1
MBD1	3p-Amp	1	1
MBD1	3q-Amp	1	1
MBD1	7p-Amp	1	1
MBD1	7q-Amp	1	1
MBD1	15q-Del	1	1
MBD1	18q-Del	1	1
MBD1	19p-Del	1	1
MBD1	4q-Del	1	1
MBD1	Amp_3q26.33	1	1
MBD1	Amp_6q21	1	1
MBD1	Amp_7p21.1	1	1
MBD1	Amp_17q12	1	1
MBD1	Amp_17q23.3	1	1
MBD1	Del_1p36.11	1	1
MBD1	Del_1q32.1	1	1
MBD1	Del_4q22.1	1	1
MBD1	Del_12p13.1	1	1
MBD1	Del_15q13.1	1	1
MBD1	Del_16q23.1	1	1
MBD1	Del_18q23	1	1
MBD1	Del_Xp11.3	1	1
MBD1	Del_Xq21.33	1	1
METTL3	NFE2L2	1	1
METTL3	NRAS	1	1
METTL3	NUDT11	1	1
METTL3	PLCXD3	1	1
METTL3	PTEN	1	1
METTL3	THRAP3	1	1
METTL3	TMCO4	1	1
METTL3	UNC93B1	1	1
METTL3	ZNF185	1	1
METTL3	17q-Amp	1	1
METTL3	19q-Amp	1	1
METTL3	1q-Amp	1	1
METTL3	7p-Amp	1	1
METTL3	7q-Amp	1	1
METTL3	10q-Del	1	1
METTL3	19p-Del	1	1
METTL3	Amp_1p34.2	1	1
METTL3	Amp_4p16.3	1	1
METTL3	Amp_4q13.3	1	1
METTL3	Amp_7p11.2	1	1
METTL3	Amp_11q22.2	1	1
METTL3	Amp_16p13.2	1	1
METTL3	Del_1p36.11	1	1
METTL3	Del_7q36.3	1	1
MLL	NF2	1	1
MLL	NUDT11	1	1
MLL	SCARF2	1	1
MLL	19p-Del	1	1
MLL	6q-Del	1	1
NF1	PLCXD3	1	1
NF1	RHOA	1	1
NF1	RHOB	1	1
NF1	17q-Amp	1	1
NF1	19p-Del	1	1
NF1	4p-Del	1	1
NF1	4q-Del	1	1
NF1	Amp_6q21	1	1
NF1	Del_1p36.11	1	1
NF1	Del_12p13.1	1	1
NF2	NRAS	1	1
NF2	NUDT11	1	1
NF2	PKHD1	1	1
NF2	PTEN	1	1
NF2	RPTN	1	1
NF2	RUNX1	1	1
NF2	RXRA	1	1
NF2	SCARF2	1	1
NF2	SF1	1	1
NF2	SHANK1	1	1
NF2	TMCO4	1	1
NF2	ZBTB7B	1	1
NF2	ZFP36L1	1	1
NF2	ZNF185	1	1
NF2	17q-Amp	1	1
NF2	19q-Amp	1	1
NF2	1q-Amp	1	1
NF2	20p-Amp	1	1
NF2	20q-Amp	1	1
NF2	3p-Amp	1	1
NF2	3q-Amp	1	1
NF2	7q-Amp	1	1
NF2	11p-Del	1	1
NF2	11q-Del	1	1
NF2	14q-Del	1	1
NF2	15q-Del	1	1
NF2	17p-Del	1	1
NF2	19p-Del	1	1
NF2	9p-Del	1	1
NF2	9q-Del	1	1
NF2	Amp_1p34.2	1	1
NF2	Amp_4p16.3	1	1
NF2	Amp_4q13.3	1	1
NF2	Amp_7p11.2	1	1
NF2	Amp_8p11.21	1	1
NF2	Amp_11q13.3	1	1
NF2	Amp_11q22.2	1	1
NF2	Amp_12q15	1	1
NF2	Amp_17q12	1	1
NF2	Amp_17q23.3	1	1
NF2	Amp_19q12	1	1
NF2	Amp_19q13.43	1	1
NF2	Amp_20q11.21	1	1
NF2	Amp_22q12.2	1	1
NF2	Del_1p36.11	1	1
NF2	Del_1q32.1	1	1
NF2	Del_2q22.1	1	1
NF2	Del_3p14.2	1	1
NF2	Del_9p23	1	1
NF2	Del_11p15.5	1	1
NF2	Del_11q23.3	1	1
NF2	Del_11q25	1	1
NF2	Del_12p13.1	1	1
NF2	Del_14q24.1	1	1
NF2	Del_15q13.1	1	1
NF2	Del_17p12	1	1
NF2	Del_19p13.3	1	1
NF2	Del_Xp11.3	1	1
NF2	Del_Xq21.33	1	1
NFE2L2	NRAS	1	1
NFE2L2	NUDT11	1	1
NFE2L2	PLCXD3	1	1
NFE2L2	PSIP1	1	1
NFE2L2	RB1	1	1
NFE2L2	RBM10	1	1
NFE2L2	RHOA	1	1
NFE2L2	RUNX1	1	1
NFE2L2	RXRA	1	1
NFE2L2	SF1	1	1
NFE2L2	SHANK1	1	1
NFE2L2	THRAP3	1	1
NFE2L2	TMCO4	1	1
NFE2L2	UNC93B1	1	1
NFE2L2	ZFP36L1	1	1
NFE2L2	ZNF185	1	1
NFE2L2	17q-Amp	1	1
NFE2L2	14q-Del	1	1
NFE2L2	16p-Del	1	1
NFE2L2	Amp_4p16.3	1	1
NFE2L2	Amp_4q13.3	1	1
NFE2L2	Amp_6p22.3	1	1
NFE2L2	Amp_6q21	1	1
NFE2L2	Amp_11q22.2	1	1
NFE2L2	Amp_16p13.2	1	1
NFE2L2	Amp_19q12	1	1
NFE2L2	Del_1q32.1	1	1
NFE2L2	Del_6p25.3	1	1
NFE2L2	Del_14q24.1	1	1
NFE2L2	Del_Xp11.3	1	1
NFE2L2	Del_Xq21.33	1	1
NRAS	NUDT11	1	1
NRAS	PARD3	1	1
NRAS	PKHD1	1	1
NRAS	PLCXD3	1	1
NRAS	PSIP1	1	1
NRAS	PTEN	1	1
NRAS	RAI1	1	1
NRAS	RBM10	1	1
NRAS	RHOA	1	1
NRAS	RHOB	1	1
NRAS	RPTN	1	1
NRAS	SCARF2	1	1
NRAS	SHANK1	1	1
NRAS	STAG2	1	1
NRAS	THRAP3	1	1
NRAS	TMCO4	1	1
NRAS	UNC93B1	1	1
NRAS	ZBTB7B	1	1
NRAS	ZFP36L1	1	1
NRAS	ZNF185	1	1
NRAS	17q-Amp	1	1
NRAS	1q-Amp	1	1
NRAS	3p-Amp	1	1
NRAS	5p-Amp	1	1
NRAS	7p-Amp	1	1
NRAS	7q-Amp	1	1
NRAS	10q-Del	1	1
NRAS	11q-Del	1	1
NRAS	16p-Del	1	1
NRAS	19p-Del	1	1
NRAS	22q-Del	1	1
NRAS	4p-Del	1	1
NRAS	4q-Del	1	1
NRAS	6q-Del	1	1
NRAS	9q-Del	1	1
NRAS	Amp_4p16.3	1	1
NRAS	Amp_4q13.3	1	1
NRAS	Amp_7p21.1	1	1
NRAS	Amp_7p11.2	1	1
NRAS	Amp_8p11.23	1	1
NRAS	Amp_11q13.3	1	1
NRAS	Amp_12q15	1	1
NRAS	Amp_13q22.1	1	1
NRAS	Del_1q32.1	1	1
NRAS	Del_2q34	1	1
NRAS	Del_2q37.1	1	1
NRAS	Del_4q22.1	1	1
NRAS	Del_4q34.2	1	1
NRAS	Del_6p25.3	1	1
NRAS	Del_6q27	1	1
NRAS	Del_7q36.3	1	1
NRAS	Del_10q23.31	1	1
NRAS	Del_11q23.3	1	1
NRAS	Del_11q25	1	1
NRAS	Del_12p13.1	1	1
NRAS	Del_13q14.2	1	1
NRAS	Del_16q23.1	1	1
NRAS	Del_19p13.3	1	1
NRAS	Del_22q13.32	1	1
NRAS	Del_Xp11.3	1	1
NRAS	Del_Xq21.33	1	1
NUDT11	PARD3	1	1
NUDT11	PKHD1	1	1
NUDT11	PLCXD3	1	1
NUDT11	PSIP1	1	1
NUDT11	PTEN	1	1
NUDT11	RHOA	1	1
NUDT11	RHOB	1	1
NUDT11	RPTN	1	1
NUDT11	RUNX1	1	1
NUDT11	SCARF2	1	1
NUDT11	SF1	1	1
NUDT11	SHANK1	1	1
NUDT11	THRAP3	1	1
NUDT11	TSC1	1	1
NUDT11	TXNIP	1	1
NUDT11	UNC93B1	1	1
NUDT11	ZBTB7B	1	1
NUDT11	ZFP36L1	1	1
NUDT11	ZNF185	1	1
NUDT11	17q-Amp	1	1
NUDT11	1q-Amp	1	1
NUDT11	20p-Amp	1	1
NUDT11	20q-Amp	1	1
NUDT11	3p-Amp	1	1
NUDT11	3q-Amp	1	1
NUDT11	7p-Amp	1	1
NUDT11	7q-Amp	1	1
NUDT11	19p-Del	1	1
NUDT11	22q-Del	1	1
NUDT11	Amp_1p34.2	1	1
NUDT11	Amp_1q21.3	1	1
NUDT11	Amp_3p25.2	1	1
NUDT11	Amp_3q26.33	1	1
NUDT11	Amp_4p16.3	1	1
NUDT11	Amp_4q13.3	1	1
NUDT11	Amp_6p22.3	1	1
NUDT11	Amp_6q21	1	1
NUDT11	Amp_7p21.1	1	1
NUDT11	Amp_7p11.2	1	1
NUDT11	Amp_11q13.3	1	1
NUDT11	Amp_12q15	1	1
NUDT11	Amp_16p13.2	1	1
NUDT11	Amp_17q12	1	1
NUDT11	Amp_17q23.3	1	1
NUDT11	Amp_20q11.21	1	1
NUDT11	Amp_22q12.2	1	1
NUDT11	Del_1p36.11	1	1
NUDT11	Del_1q32.1	1	1
NUDT11	Del_3p14.2	1	1
NUDT11	Del_4q34.2	1	1
NUDT11	Del_6p25.3	1	1
NUDT11	Del_6q27	1	1
NUDT11	Del_7q36.3	1	1
NUDT11	Del_12p13.1	1	1
NUDT11	Del_14q24.1	1	1
NUDT11	Del_15q13.1	1	1
NUDT11	Del_16q23.1	1	1
NUDT11	Del_19p13.3	1	1
NUDT11	Del_Xq21.33	1	1
PARD3	PLCXD3	1	1
PARD3	PTEN	1	1
PARD3	RPTN	1	1
PARD3	SF1	1	1
PARD3	TMCO4	1	1
PARD3	UNC93B1	1	1
PARD3	1q-Amp	1	1
PARD3	3p-Amp	1	1
PARD3	3q-Amp	1	1
PARD3	11q-Del	1	1
PARD3	15q-Del	1	1
PARD3	18q-Del	1	1
PARD3	9p-Del	1	1
PARD3	Amp_1p34.2	1	1
PARD3	Amp_6q21	1	1
PARD3	Amp_11q22.2	1	1
PARD3	Del_1p36.11	1	1
PARD3	Del_1q32.1	1	1
PARD3	Del_5q12.1	1	1
PARD3	Del_Xp11.3	1	1
PIK3CA	SCARF2	1	1
PIK3CA	17q-Amp	1	1
PIK3CA	Amp_7p21.1	1	1
PKHD1	SF1	1	1
PKHD1	THRAP3	1	1
PKHD1	TMCO4	1	1
PKHD1	ZNF185	1	1
PKHD1	17q-Amp	1	1
PKHD1	15q-Del	1	1
PKHD1	Amp_4p16.3	1	1
PLCXD3	PTEN	1	1
PLCXD3	RAI1	1	1
PLCXD3	RBM10	1	1
PLCXD3	RHOB	1	1
PLCXD3	RUNX1	1	1
PLCXD3	RXRA	1	1
PLCXD3	SCARF2	1	1
PLCXD3	SF1	1	1
PLCXD3	SHANK1	1	1
PLCXD3	SPTAN1	1	1
PLCXD3	STAG2	1	1
PLCXD3	THRAP3	1	1
PLCXD3	TMCO4	1	1
PLCXD3	UNC93B1	1	1
PLCXD3	ZFP36L1	1	1
PLCXD3	ZNF185	1	1
PLCXD3	17q-Amp	1	1
PLCXD3	19q-Amp	1	1
PLCXD3	1q-Amp	1	1
PLCXD3	20p-Amp	1	1
PLCXD3	20q-Amp	1	1
PLCXD3	3p-Amp	1	1
PLCXD3	3q-Amp	1	1
PLCXD3	7p-Amp	1	1
PLCXD3	7q-Amp	1	1
PLCXD3	11p-Del	1	1
PLCXD3	14q-Del	1	1
PLCXD3	15q-Del	1	1
PLCXD3	19p-Del	1	1
PLCXD3	22q-Del	1	1
PLCXD3	6q-Del	1	1
PLCXD3	9p-Del	1	1
PLCXD3	9q-Del	1	1
PLCXD3	Amp_1p34.2	1	1
PLCXD3	Amp_1q23.3	1	1
PLCXD3	Amp_4p16.3	1	1
PLCXD3	Amp_4q13.3	1	1
PLCXD3	Amp_7p21.1	1	1
PLCXD3	Amp_10p14	1	1
PLCXD3	Amp_11q13.3	1	1
PLCXD3	Amp_11q22.2	1	1
PLCXD3	Amp_12q15	1	1
PLCXD3	Amp_16p13.2	1	1
PLCXD3	Amp_17q23.3	1	1
PLCXD3	Amp_20q11.21	1	1
PLCXD3	Del_1p36.11	1	1
PLCXD3	Del_1q32.1	1	1
PLCXD3	Del_6q27	1	1
PLCXD3	Del_7q36.3	1	1
PLCXD3	Del_13q14.2	1	1
PLCXD3	Del_14q24.1	1	1
PLCXD3	Del_19p13.3	1	1
PLCXD3	Del_22q13.32	1	1
PLCXD3	Del_Xq21.33	1	1
PSIP1	SCARF2	1	1
PSIP1	SF1	1	1
PSIP1	ZBTB7B	1	1
PSIP1	ZFP36L1	1	1
PSIP1	ZNF185	1	1
PSIP1	3p-Amp	1	1
PSIP1	7p-Amp	1	1
PSIP1	7q-Amp	1	1
PSIP1	6q-Del	1	1
PSIP1	Amp_6q21	1	1
PSIP1	Amp_7p11.2	1	1
PSIP1	Amp_13q22.1	1	1
PSIP1	Amp_19q13.43	1	1
PSIP1	Amp_22q12.2	1	1
PSIP1	Del_1p36.11	1	1
PTEN	RHOA	1	1
PTEN	RUNX1	1	1
PTEN	SHANK1	1	1
PTEN	THRAP3	1	1
PTEN	TMCO4	1	1
PTEN	UNC93B1	1	1
PTEN	ZFP36L1	1	1
PTEN	ZNF185	1	1
PTEN	17q-Amp	1	1
PTEN	1q-Amp	1	1
PTEN	3q-Amp	1	1
PTEN	11p-Del	1	1
PTEN	11q-Del	1	1
PTEN	18q-Del	1	1
PTEN	19p-Del	1	1
PTEN	4p-Del	1	1
PTEN	6q-Del	1	1
PTEN	8p-Del	1	1
PTEN	Amp_6q21	1	1
PTEN	Amp_12q15	1	1
PTEN	Amp_19q13.43	1	1
PTEN	Del_11q25	1	1
PTEN	Del_Xp11.3	1	1
PTEN	Del_Xq21.33	1	1
RAI1	SF1	1	1
RAI1	TMCO4	1	1
RAI1	ZNF185	1	1
RAI1	19q-Amp	1	1
RAI1	1q-Amp	1	1
RAI1	15q-Del	1	1
RAI1	19p-Del	1	1
RAI1	4q-Del	1	1
RAI1	5q-Del	1	1
RAI1	Amp_6q21	1	1
RAI1	Amp_8p11.23	1	1
RB1	SCARF2	1	1
RB1	9p-Del	1	1
RB1	9q-Del	1	1
RB1	Del_9p23	1	1
RB1	Del_9p21.3	1	1
RBM10	RPTN	1	1
RBM10	RUNX1	1	1
RBM10	SF1	1	1
RBM10	SHANK1	1	1
RBM10	TMCO4	1	1
RBM10	UNC93B1	1	1
RBM10	ZNF185	1	1
RBM10	17q-Amp	1	1
RBM10	1q-Amp	1	1
RBM10	19p-Del	1	1
RBM10	Amp_1p34.2	1	1
RBM10	Amp_4q13.3	1	1
RBM10	Amp_6q21	1	1
RBM10	Amp_19q13.43	1	1
RBM10	Del_1p36.11	1	1
RBM10	Del_1q32.1	1	1
RBM10	Del_3p14.2	1	1
RBM10	Del_4q22.1	1	1
RBM10	Del_7q36.3	1	1
RBM10	Del_12p13.1	1	1
RHOA	RHOB	1	1
RHOA	RPTN	1	1
RHOA	RUNX1	1	1
RHOA	UNC93B1	1	1
RHOA	ZBTB7B	1	1
RHOA	ZNF185	1	1
RHOA	1q-Amp	1	1
RHOA	11q-Del	1	1
RHOA	14q-Del	1	1
RHOA	19p-Del	1	1
RHOA	22q-Del	1	1
RHOA	Amp_1p34.2	1	1
RHOA	Amp_1q21.3	1	1
RHOA	Amp_6q21	1	1
RHOA	Amp_11q22.2	1	1
RHOA	Amp_16p13.2	1	1
RHOA	Amp_17q12	1	1
RHOA	Del_1p36.11	1	1
RHOA	Del_1q32.1	1	1
RHOA	Del_7q36.3	1	1
RHOA	Del_11q23.3	1	1
RHOA	Del_11q25	1	1
RHOA	Del_12p13.1	1	1
RHOA	Del_22q13.32	1	1
RHOA	Del_Xp11.3	1	1
RHOA	Del_Xq21.33	1	1
RHOB	ZNF185	1	1
RHOB	17q-Amp	1	1
RHOB	19q-Amp	1	1
RHOB	16p-Del	1	1
RHOB	Amp_4q13.3	1	1
RHOB	Amp_6q21	1	1
RHOB	Amp_22q12.2	1	1
RHOB	Del_1p36.11	1	1
RHOB	Del_1q32.1	1	1
RHOB	Del_7q36.3	1	1
RHOB	Del_16p13.3	1	1
RHOB	Del_Xp11.3	1	1
RPTN	RUNX1	1	1
RPTN	RXRA	1	1
RPTN	SCARF2	1	1
RPTN	SF1	1	1
RPTN	SHANK1	1	1
RPTN	TXNIP	1	1
RPTN	UNC93B1	1	1
RPTN	ZBTB7B	1	1
RPTN	ZFP36L1	1	1
RPTN	ZNF185	1	1
RPTN	19q-Amp	1	1
RPTN	7q-Amp	1	1
RPTN	19p-Del	1	1
RPTN	Amp_4p16.3	1	1
RPTN	Amp_6q21	1	1
RPTN	Amp_10p14	1	1
RPTN	Del_1p36.11	1	1
RPTN	Del_6q27	1	1
RPTN	Del_7q36.3	1	1
RPTN	Del_19p13.3	1	1
RPTN	Del_Xp11.3	1	1
RUNX1	SCARF2	1	1
RUNX1	THRAP3	1	1
RUNX1	TMCO4	1	1
RUNX1	ZBTB7B	1	1
RUNX1	ZFP36L1	1	1
RUNX1	17q-Amp	1	1
RUNX1	19q-Amp	1	1
RUNX1	7p-Amp	1	1
RUNX1	7q-Amp	1	1
RUNX1	14q-Del	1	1
RUNX1	15q-Del	1	1
RUNX1	18q-Del	1	1
RUNX1	19p-Del	1	1
RUNX1	22q-Del	1	1
RUNX1	6q-Del	1	1
RUNX1	9p-Del	1	1
RUNX1	9q-Del	1	1
RUNX1	Amp_4p16.3	1	1
RUNX1	Amp_4q13.3	1	1
RUNX1	Amp_7p21.1	1	1
RUNX1	Amp_7p11.2	1	1
RUNX1	Amp_13q22.1	1	1
RUNX1	Del_1p36.11	1	1
RUNX1	Del_5q12.1	1	1
RUNX1	Del_7q36.3	1	1
RUNX1	Del_9p23	1	1
RUNX1	Del_Xp11.3	1	1
RUNX1	Del_Xq21.33	1	1
RXRA	ZFP36L1	1	1
RXRA	ZNF185	1	1
RXRA	1q-Amp	1	1
RXRA	19p-Del	1	1
RXRA	Amp_4p16.3	1	1
RXRA	Amp_6q21	1	1
RXRA	Del_1p36.11	1	1
RXRA	Del_1q32.1	1	1
RXRA	Del_7q36.3	1	1
SCARF2	SF1	1	1
SCARF2	SPTAN1	1	1
SCARF2	TMCO4	1	1
SCARF2	TXNIP	1	1
SCARF2	UNC93B1	1	1
SCARF2	ZBTB7B	1	1
SCARF2	ZNF185	1	1
SCARF2	17q-Amp	1	1
SCARF2	19q-Amp	1	1
SCARF2	1q-Amp	1	1
SCARF2	3p-Amp	1	1
SCARF2	10q-Del	1	1
SCARF2	11p-Del	1	1
SCARF2	11q-Del	1	1
SCARF2	14q-Del	1	1
SCARF2	15q-Del	1	1
SCARF2	19p-Del	1	1
SCARF2	22q-Del	1	1
SCARF2	4p-Del	1	1
SCARF2	4q-Del	1	1
SCARF2	5q-Del	1	1
SCARF2	9p-Del	1	1
SCARF2	Amp_1p34.2	1	1
SCARF2	Amp_4p16.3	1	1
SCARF2	Amp_4q13.3	1	1
SCARF2	Amp_6q21	1	1
SCARF2	Amp_8p11.21	1	1
SCARF2	Amp_11q22.2	1	1
SCARF2	Amp_13q22.1	1	1
SCARF2	Amp_16p13.2	1	1
SCARF2	Amp_17q12	1	1
SCARF2	Amp_17q23.3	1	1
SCARF2	Amp_19q13.43	1	1
SCARF2	Del_1p36.11	1	1
SCARF2	Del_1q32.1	1	1
SCARF2	Del_2q22.1	1	1
SCARF2	Del_3p14.2	1	1
SCARF2	Del_4q22.1	1	1
SCARF2	Del_4q34.2	1	1
SCARF2	Del_11p15.5	1	1
SCARF2	Del_12p13.1	1	1
SCARF2	Del_13q14.2	1	1
SCARF2	Del_14q24.1	1	1
SCARF2	Del_19p13.3	1	1
SCARF2	Del_22q13.32	1	1
SCARF2	Del_Xp11.3	1	1
SCARF2	Del_Xq21.33	1	1
SF1	SPTAN1	1	1
SF1	THRAP3	1	1
SF1	TMCO4	1	1
SF1	TXNIP	1	1
SF1	UNC93B1	1	1
SF1	ZBTB7B	1	1
SF1	ZFP36L1	1	1
SF1	ZNF185	1	1
SF1	17q-Amp	1	1
SF1	20p-Amp	1	1
SF1	20q-Amp	1	1
SF1	3p-Amp	1	1
SF1	3q-Amp	1	1
SF1	7p-Amp	1	1
SF1	7q-Amp	1	1
SF1	11q-Del	1	1
SF1	14q-Del	1	1
SF1	19p-Del	1	1
SF1	22q-Del	1	1
SF1	4p-Del	1	1
SF1	4q-Del	1	1
SF1	6q-Del	1	1
SF1	9q-Del	1	1
SF1	Amp_4p16.3	1	1
SF1	Amp_4q13.3	1	1
SF1	Amp_6q21	1	1
SF1	Amp_11q13.3	1	1
SF1	Amp_12q15	1	1
SF1	Amp_17q12	1	1
SF1	Amp_22q12.2	1	1
SF1	Del_1p36.11	1	1
SF1	Del_1q32.1	1	1
SF1	Del_2q22.1	1	1
SF1	Del_7q36.3	1	1
SF1	Del_11q25	1	1
SF1	Del_Xp11.3	1	1
SF1	Del_Xq21.33	1	1
SHANK1	ZBTB7B	1	1
SHANK1	17q-Amp	1	1
SHANK1	19q-Amp	1	1
SHANK1	1q-Amp	1	1
SHANK1	5p-Amp	1	1
SHANK1	15q-Del	1	1
SHANK1	17p-Del	1	1
SHANK1	22q-Del	1	1
SHANK1	4q-Del	1	1
SHANK1	9p-Del	1	1
SHANK1	Amp_4p16.3	1	1
SHANK1	Amp_4q13.3	1	1
SHANK1	Amp_6q21	1	1
SHANK1	Amp_11q22.2	1	1
SHANK1	Amp_17q12	1	1
SHANK1	Del_1q32.1	1	1
SHANK1	Del_7q36.3	1	1
SHANK1	Del_15q13.1	1	1
SPTAN1	ZBTB7B	1	1
SPTAN1	ZNF185	1	1
SPTAN1	19p-Del	1	1
STAG2	UNC93B1	1	1
STAG2	ZNF185	1	1
STAG2	17q-Amp	1	1
STAG2	19q-Amp	1	1
STAG2	3p-Amp	1	1
STAG2	Del_1p36.11	1	1
THRAP3	ZFP36L1	1	1
THRAP3	ZNF185	1	1
THRAP3	17q-Amp	1	1
THRAP3	19q-Amp	1	1
THRAP3	3p-Amp	1	1
THRAP3	11q-Del	1	1
THRAP3	16p-Del	1	1
THRAP3	19p-Del	1	1
THRAP3	8p-Del	1	1
THRAP3	Amp_4p16.3	1	1
THRAP3	Amp_5p15.33	1	1
THRAP3	Amp_6q21	1	1
THRAP3	Amp_8p11.23	1	1
THRAP3	Amp_11q22.2	1	1
THRAP3	Amp_16p13.2	1	1
THRAP3	Del_1q32.1	1	1
THRAP3	Del_7q36.3	1	1
THRAP3	Del_11q25	1	1
THRAP3	Del_12p13.1	1	1
THRAP3	Del_Xp11.3	1	1
TMCO4	TSC1	1	1
TMCO4	TXNIP	1	1
TMCO4	ZBTB7B	1	1
TMCO4	ZFP36L1	1	1
TMCO4	ZNF185	1	1
TMCO4	17q-Amp	1	1
TMCO4	19q-Amp	1	1
TMCO4	3p-Amp	1	1
TMCO4	16p-Del	1	1
TMCO4	19p-Del	1	1
TMCO4	22q-Del	1	1
TMCO4	Amp_6q21	1	1
TMCO4	Del_1p36.11	1	1
TMCO4	Del_1q32.1	1	1
TMCO4	Del_2q34	1	1
TMCO4	Del_19p13.3	1	1
TMCO4	Del_22q13.32	1	1
TP53	9p-Del	1	1
TP53	9q-Del	1	1
TP53	Amp_12q15	1	1
TP53	Del_9p21.3	1	1
TSC1	UNC93B1	1	1
TSC1	ZBTB7B	1	1
TSC1	ZNF185	1	1
TSC1	3p-Amp	1	1
TSC1	10q-Del	1	1
TSC1	16p-Del	1	1
TSC1	4q-Del	1	1
TSC1	Amp_6p22.3	1	1
TSC1	Del_1p36.11	1	1
TSC1	Del_1q32.1	1	1
TSC1	Del_4q22.1	1	1
TSC1	Del_7q36.3	1	1
TXNIP	ZNF185	1	1
TXNIP	17q-Amp	1	1
TXNIP	19q-Amp	1	1
TXNIP	1q-Amp	1	1
TXNIP	20p-Amp	1	1
TXNIP	15q-Del	1	1
TXNIP	19p-Del	1	1
TXNIP	22q-Del	1	1
TXNIP	Amp_11q22.2	1	1
TXNIP	Del_1p36.11	1	1
TXNIP	Del_Xp11.3	1	1
UNC93B1	ZBTB7B	1	1
UNC93B1	ZFP36L1	1	1
UNC93B1	ZNF185	1	1
UNC93B1	17q-Amp	1	1
UNC93B1	19q-Amp	1	1
UNC93B1	1q-Amp	1	1
UNC93B1	20p-Amp	1	1
UNC93B1	20q-Amp	1	1
UNC93B1	7p-Amp	1	1
UNC93B1	7q-Amp	1	1
UNC93B1	8q-Amp	1	1
UNC93B1	15q-Del	1	1
UNC93B1	16p-Del	1	1
UNC93B1	18q-Del	1	1
UNC93B1	19p-Del	1	1
UNC93B1	22q-Del	1	1
UNC93B1	5q-Del	1	1
UNC93B1	6q-Del	1	1
UNC93B1	9p-Del	1	1
UNC93B1	9q-Del	1	1
UNC93B1	Amp_3q26.33	1	1
UNC93B1	Amp_4p16.3	1	1
UNC93B1	Amp_4q13.3	1	1
UNC93B1	Amp_6q21	1	1
UNC93B1	Amp_7p21.1	1	1
UNC93B1	Amp_7p11.2	1	1
UNC93B1	Amp_8p11.23	1	1
UNC93B1	Amp_10p14	1	1
UNC93B1	Amp_11q22.2	1	1
UNC93B1	Amp_12q15	1	1
UNC93B1	Amp_13q22.1	1	1
UNC93B1	Amp_19q13.43	1	1
UNC93B1	Amp_20q11.21	1	1
UNC93B1	Amp_22q12.2	1	1
UNC93B1	Del_1p36.11	1	1
UNC93B1	Del_1q32.1	1	1
UNC93B1	Del_3p14.2	1	1
UNC93B1	Del_6q27	1	1
UNC93B1	Del_7q36.3	1	1
UNC93B1	Del_9p23	1	1
UNC93B1	Del_15q13.1	1	1
UNC93B1	Del_18q23	1	1
UNC93B1	Del_22q13.32	1	1
UNC93B1	Del_Xq21.33	1	1
ZBTB7B	ZNF185	1	1
ZBTB7B	17q-Amp	1	1
ZBTB7B	19q-Amp	1	1
ZBTB7B	1q-Amp	1	1
ZBTB7B	20p-Amp	1	1
ZBTB7B	20q-Amp	1	1
ZBTB7B	3p-Amp	1	1
ZBTB7B	3q-Amp	1	1
ZBTB7B	10q-Del	1	1
ZBTB7B	11q-Del	1	1
ZBTB7B	14q-Del	1	1
ZBTB7B	15q-Del	1	1
ZBTB7B	16p-Del	1	1
ZBTB7B	18q-Del	1	1
ZBTB7B	19p-Del	1	1
ZBTB7B	22q-Del	1	1
ZBTB7B	4q-Del	1	1
ZBTB7B	Amp_1p34.2	1	1
ZBTB7B	Amp_3q26.33	1	1
ZBTB7B	Amp_4p16.3	1	1
ZBTB7B	Amp_4q13.3	1	1
ZBTB7B	Amp_10p14	1	1
ZBTB7B	Amp_12q15	1	1
ZBTB7B	Amp_16p13.2	1	1
ZBTB7B	Amp_17q12	1	1
ZBTB7B	Amp_17q23.3	1	1
ZBTB7B	Amp_19q12	1	1
ZBTB7B	Amp_20q11.21	1	1
ZBTB7B	Amp_22q12.2	1	1
ZBTB7B	Del_1p36.11	1	1
ZBTB7B	Del_1q32.1	1	1
ZBTB7B	Del_2q34	1	1
ZBTB7B	Del_2q37.1	1	1
ZBTB7B	Del_3p14.2	1	1
ZBTB7B	Del_4q22.1	1	1
ZBTB7B	Del_10q23.31	1	1
ZBTB7B	Del_11q23.3	1	1
ZBTB7B	Del_11q25	1	1
ZBTB7B	Del_12p13.1	1	1
ZBTB7B	Del_14q24.1	1	1
ZBTB7B	Del_15q13.1	1	1
ZBTB7B	Del_16p13.3	1	1
ZBTB7B	Del_18q23	1	1
ZBTB7B	Del_19p13.3	1	1
ZBTB7B	Del_22q13.32	1	1
ZFP36L1	3p-Amp	1	1
ZFP36L1	14q-Del	1	1
ZFP36L1	15q-Del	1	1
ZFP36L1	4q-Del	1	1
ZFP36L1	Amp_4p16.3	1	1
ZFP36L1	Del_1p36.11	1	1
ZFP36L1	Del_12p13.1	1	1
ZFP36L1	Del_14q24.1	1	1
ZFP36L1	Del_Xp11.3	1	1
ZFP36L1	Del_Xq21.33	1	1
ZNF185	17q-Amp	1	1
ZNF185	19q-Amp	1	1
ZNF185	1q-Amp	1	1
ZNF185	3p-Amp	1	1
ZNF185	3q-Amp	1	1
ZNF185	5p-Amp	1	1
ZNF185	10q-Del	1	1
ZNF185	14q-Del	1	1
ZNF185	15q-Del	1	1
ZNF185	16p-Del	1	1
ZNF185	18q-Del	1	1
ZNF185	19p-Del	1	1
ZNF185	22q-Del	1	1
ZNF185	4p-Del	1	1
ZNF185	4q-Del	1	1
ZNF185	5q-Del	1	1
ZNF185	8p-Del	1	1
ZNF185	9p-Del	1	1
ZNF185	9q-Del	1	1
ZNF185	Amp_1q23.3	1	1
ZNF185	Amp_3q26.33	1	1
ZNF185	Amp_4p16.3	1	1
ZNF185	Amp_4q13.3	1	1
ZNF185	Amp_5p15.33	1	1
ZNF185	Amp_6q21	1	1
ZNF185	Amp_8p11.23	1	1
ZNF185	Amp_8p11.21	1	1
ZNF185	Amp_11q22.2	1	1
ZNF185	Amp_13q22.1	1	1
ZNF185	Amp_16p13.2	1	1
ZNF185	Amp_17q12	1	1
ZNF185	Amp_17q23.3	1	1
ZNF185	Amp_19q12	1	1
ZNF185	Amp_19q13.43	1	1
ZNF185	Amp_22q12.2	1	1
ZNF185	Del_1p36.11	1	1
ZNF185	Del_1q32.1	1	1
ZNF185	Del_2q22.1	1	1
ZNF185	Del_4q22.1	1	1
ZNF185	Del_5q12.1	1	1
ZNF185	Del_6p25.3	1	1
ZNF185	Del_7q36.3	1	1
ZNF185	Del_9p23	1	1
ZNF185	Del_9p21.3	1	1
ZNF185	Del_11p15.5	1	1
ZNF185	Del_12p13.1	1	1
ZNF185	Del_14q24.1	1	1
ZNF185	Del_15q13.1	1	1
ZNF185	Del_16p13.3	1	1
ZNF185	Del_16q23.1	1	1
ZNF185	Del_19p13.3	1	1
ZNF185	Del_22q13.32	1	1
ZNF185	Del_Xp11.3	1	1
ZNF185	Del_Xq21.33	1	1
17q-Amp	3p-Amp	1	1
17q-Amp	3q-Amp	1	1
17q-Amp	7p-Amp	1	1
17q-Amp	10q-Del	1	1
17q-Amp	17p-Del	1	1
17q-Amp	19p-Del	1	1
17q-Amp	22q-Del	1	1
17q-Amp	4p-Del	1	1
17q-Amp	4q-Del	1	1
17q-Amp	Amp_4p16.3	1	1
17q-Amp	Del_1p36.11	1	1
17q-Amp	Del_7q36.3	1	1
17q-Amp	Del_12p13.1	1	1
17q-Amp	Del_Xp11.3	1	1
19q-Amp	1q-Amp	1	1
19q-Amp	7q-Amp	1	1
19q-Amp	19p-Del	1	1
19q-Amp	4p-Del	1	1
19q-Amp	4q-Del	1	1
19q-Amp	Amp_4q13.3	1	1
19q-Amp	Amp_6q21	1	1
19q-Amp	Amp_16p13.2	1	1
19q-Amp	Del_1p36.11	1	1
19q-Amp	Del_12p13.1	1	1
19q-Amp	Del_Xq21.33	1	1
1q-Amp	20p-Amp	1	1
1q-Amp	20q-Amp	1	1
1q-Amp	3p-Amp	1	1
1q-Amp	7p-Amp	1	1
1q-Amp	14q-Del	1	1
1q-Amp	18q-Del	1	1
1q-Amp	19p-Del	1	1
1q-Amp	4q-Del	1	1
1q-Amp	Amp_6q21	1	1
1q-Amp	Amp_13q22.1	1	1
1q-Amp	Del_1p36.11	1	1
1q-Amp	Del_1q32.1	1	1
1q-Amp	Del_7q36.3	1	1
1q-Amp	Del_14q24.1	1	1
1q-Amp	Del_19p13.3	1	1
1q-Amp	Del_Xp11.3	1	1
3p-Amp	19p-Del	1	1
3p-Amp	4p-Del	1	1
3p-Amp	5q-Del	1	1
3p-Amp	Amp_4q13.3	1	1
3p-Amp	Amp_6q21	1	1
3p-Amp	Amp_16p13.2	1	1
3p-Amp	Del_Xp11.3	1	1
3q-Amp	5q-Del	1	1
3q-Amp	Amp_4q13.3	1	1
5p-Amp	Del_1q32.1	1	1
7p-Amp	15q-Del	1	1
7p-Amp	16p-Del	1	1
7p-Amp	19p-Del	1	1
7p-Amp	Amp_1p34.2	1	1
7p-Amp	Amp_4p16.3	1	1
7p-Amp	Amp_4q13.3	1	1
7p-Amp	Amp_17q12	1	1
7p-Amp	Del_1p36.11	1	1
7p-Amp	Del_1q32.1	1	1
7p-Amp	Del_11q23.3	1	1
7p-Amp	Del_19p13.3	1	1
7p-Amp	Del_Xp11.3	1	1
7q-Amp	15q-Del	1	1
7q-Amp	19p-Del	1	1
7q-Amp	Amp_1p34.2	1	1
7q-Amp	Amp_4p16.3	1	1
7q-Amp	Amp_4q13.3	1	1
7q-Amp	Amp_6q21	1	1
7q-Amp	Del_1p36.11	1	1
7q-Amp	Del_19p13.3	1	1
7q-Amp	Del_Xp11.3	1	1
10q-Del	Amp_4p16.3	1	1
11p-Del	Amp_6q21	1	1
11q-Del	Amp_1p34.2	1	1
11q-Del	Amp_4q13.3	1	1
11q-Del	Amp_6q21	1	1
11q-Del	Del_7q36.3	1	1
14q-Del	19p-Del	1	1
15q-Del	Amp_4p16.3	1	1
15q-Del	Amp_7p11.2	1	1
15q-Del	Del_1q32.1	1	1
15q-Del	Del_7q36.3	1	1
15q-Del	Del_12p13.1	1	1
15q-Del	Del_Xp11.3	1	1
16p-Del	Amp_4p16.3	1	1
16p-Del	Amp_6q21	1	1
16p-Del	Del_1q32.1	1	1
16p-Del	Del_Xp11.3	1	1
18q-Del	Amp_1p34.2	1	1
18q-Del	Del_1q32.1	1	1
19p-Del	4q-Del	1	1
19p-Del	Amp_1p34.2	1	1
19p-Del	Amp_4p16.3	1	1
19p-Del	Amp_4q13.3	1	1
19p-Del	Amp_6p22.3	1	1
19p-Del	Amp_6q21	1	1
19p-Del	Amp_7p11.2	1	1
19p-Del	Amp_8p11.21	1	1
19p-Del	Amp_12q15	1	1
19p-Del	Amp_17q12	1	1
19p-Del	Amp_19q12	1	1
19p-Del	Amp_19q13.43	1	1
19p-Del	Del_1p36.11	1	1
19p-Del	Del_6p25.3	1	1
19p-Del	Del_12p13.1	1	1
19p-Del	Del_14q24.1	1	1
19p-Del	Del_Xp11.3	1	1
19p-Del	Del_Xq21.33	1	1
22q-Del	Amp_11q22.2	1	1
22q-Del	Amp_17q12	1	1
4p-Del	Amp_4p16.3	1	1
4p-Del	Del_1q32.1	1	1
4q-Del	Amp_4q13.3	1	1
4q-Del	Amp_22q12.2	1	1
4q-Del	Del_1q32.1	1	1
5q-Del	Amp_11q22.2	1	1
5q-Del	Del_12p13.1	1	1
6q-Del	Del_1q32.1	1	1
9q-Del	Amp_6p22.3	1	1
Amp_1p34.2	Del_1q32.1	1	1
Amp_3p25.2	Del_9p21.3	1	1
Amp_3q26.33	Amp_4q13.3	1	1
Amp_4p16.3	Amp_6q21	1	1
Amp_4p16.3	Amp_16p13.2	1	1
Amp_4p16.3	Del_6p25.3	1	1
Amp_4p16.3	Del_16q23.1	1	1
Amp_4p16.3	Del_Xq21.33	1	1
Amp_4q13.3	Amp_11q22.2	1	1
Amp_4q13.3	Del_1p36.11	1	1
Amp_4q13.3	Del_1q32.1	1	1
Amp_4q13.3	Del_11q25	1	1
Amp_6p22.3	Del_9p21.3	1	1
Amp_6q21	Amp_11q13.3	1	1
Amp_6q21	Amp_11q22.2	1	1
Amp_6q21	Del_1p36.11	1	1
Amp_6q21	Del_1q32.1	1	1
Amp_6q21	Del_2q22.1	1	1
Amp_6q21	Del_11q23.3	1	1
Amp_6q21	Del_11q25	1	1
Amp_6q21	Del_12p13.1	1	1
Amp_6q21	Del_Xq21.33	1	1
Amp_7p21.1	Del_1q32.1	1	1
Amp_7p11.2	Del_1q32.1	1	1
Amp_10p14	Del_Xp11.3	1	1
Amp_11q22.2	Del_6q27	1	1
Amp_19q13.43	Del_1q32.1	1	1
Del_1p36.11	Del_1q32.1	1	1
Del_1q32.1	Del_4q22.1	1	1
Del_1q32.1	Del_7q36.3	1	1
Del_1q32.1	Del_Xq21.33	1	1
Del_7q36.3	Del_Xp11.3	1	1
Del_7q36.3	Del_Xq21.33	1	1
Del_12p13.1	Del_Xp11.3	1	1
Del_15q13.1	Del_Xp11.3	1	1
Del_19p13.3	Del_Xq21.33	1	1
Del_Xp11.3	Del_Xq21.33	1	1
Amp_6p22.3	Amp_19q12	1.02e-06	1
16p-Del	Del_16q23.1	1.02e-11	1
7p-Amp	7q-Amp	1.02e-19	1
Amp_8q22.3	Del_8p21.3	1.04e-07	1
Del_9p21.3	Del_11p15.5	1.05e-05	1
5q-Del	Del_22q13.32	1.06e-05	1
Amp_8q22.3	Del_8p23.3	1.06e-06	1
Del_9p21.3	Del_11q23.3	1.06e-06	1
Del_11p15.5	Del_14q24.1	1.08e-05	1
Del_16p13.3	Del_16q23.1	1.08e-05	1
3q-Amp	Amp_3q26.33	1.08e-25	1
22q-Del	Del_10q23.31	1.09e-05	1
9p-Del	9q-Del	1.11e-44	1
Del_3p14.2	Del_6q27	1.12e-05	1
20p-Amp	20q-Amp	1.13e-37	1
11p-Del	Del_17p12	1.16e-07	1
9p-Del	Del_17p12	1.16e-07	1
Del_4q34.2	Del_8p23.3	1.17e-05	1
Del_10q23.31	Del_13q14.2	1.17e-05	1
11p-Del	5q-Del	1.17e-06	1
11q-Del	17p-Del	1.17e-06	1
14q-Del	Del_17p12	1.21e-06	1
5q-Del	Del_11p15.5	1.22e-06	1
19q-Amp	Amp_19q13.43	1.29e-13	1
16p-Del	Del_16p13.3	1.2e-09	1
8q-Amp	Amp_8p11.21	1.31e-09	1
Del_5q12.1	Del_17p12	1.32e-05	1
Del_9p23	Del_17p12	1.33e-05	1
9q-Del	Del_9p21.3	1.34e-15	1
11p-Del	11q-Del	1.35e-19	1
6q-Del	Del_3p14.2	1.36e-06	1
FGFR3	9p-Del	1.38e-09	1
8p-Del	Del_8p23.3	1.38e-42	1
Del_5q12.1	Del_8p21.3	1.3e-05	1
Amp_4p16.3	Del_9p23	1.42e-05	1
Amp_17q12	Amp_17q23.3	1.43e-08	1
8p-Del	Del_7q36.3	1.47e-05	1
Del_2q34	Del_16p13.3	1.47e-06	1
Del_6q27	Del_17p12	1.48e-05	1
Del_11q25	Del_17p12	1.48e-05	1
FGFR3	Del_9p23	1.49e-07	1
7p-Amp	Amp_7p11.2	1.4e-18	1
17p-Del	Del_4q34.2	1.52e-05	1
3p-Amp	3q-Amp	1.52e-14	1
7q-Amp	Amp_7p11.2	1.53e-10	1
15q-Del	Del_15q13.1	1.53e-14	1
17p-Del	Del_17p12	1.53e-42	1
16p-Del	8p-Del	1.61e-05	1
Del_3p14.2	Del_5q12.1	1.61e-05	1
9q-Del	Del_11q23.3	1.62e-05	1
Del_19p13.3	Del_22q13.32	1.67e-07	1
Del_4q34.2	Del_17p12	1.68e-07	1
Del_8p21.3	Del_14q24.1	1.71e-06	1
Del_2q22.1	Del_2q34	1.71e-10	1
4q-Del	Del_17p12	1.7e-05	1
Del_14q24.1	Del_17p12	1.81e-08	1
7p-Amp	Amp_7p21.1	1.82e-24	1
Del_8p21.3	Del_16p13.3	1.83e-06	1
4p-Del	4q-Del	1.83e-22	1
FGFR3	9q-Del	1.87e-12	1
Del_11p15.5	Del_11q25	1.88e-05	1
19p-Del	Del_19p13.3	1.88e-07	1
Del_8p23.3	Del_16p13.3	1.89e-07	1
Del_3p14.2	Del_17p12	1.94e-06	1
11p-Del	Del_11p15.5	1.94e-40	1
Del_8p23.3	Del_10q23.31	1.95e-05	1
Amp_8q22.3	Del_7q36.3	1e-04	1
22q-Del	Del_2q37.1	1e-06	1
Del_15q13.1	Del_16p13.3	2.01e-05	1
Del_9p23	Del_11p15.5	2.01e-09	1
17q-Amp	Amp_17q23.3	2.01e-10	1
6q-Del	Del_19p13.3	2.06e-05	1
22q-Del	Del_16p13.3	2.06e-07	1
10q-Del	Del_13q14.2	2.07e-05	1
22q-Del	Del_6q27	2.07e-06	1
9q-Del	Del_11p15.5	2.11e-07	1
22q-Del	Del_14q24.1	2.15e-05	1
18q-Del	9q-Del	2.17e-05	1
Del_5q12.1	Del_8p23.3	2.17e-05	1
Amp_6p22.3	Amp_8q22.3	2.23e-07	1
Del_2q37.1	Del_4q34.2	2.28e-05	1
22q-Del	Del_22q13.32	2.32e-22	1
Amp_1q21.3	Amp_1q23.3	2.33e-26	1
5q-Del	8p-Del	2.39e-05	1
8p-Del	Del_19p13.3	2.39e-05	1
6q-Del	Del_22q13.32	2.3e-05	1
Del_15q13.1	Del_22q13.32	2.3e-05	1
Amp_16p13.2	Del_16p13.3	2.3e-07	1
Del_2q37.1	Del_17p12	2.41e-05	1
Del_5q12.1	Del_9p23	2.44e-06	1
11p-Del	Del_9p21.3	2.48e-07	1
FGFR3	Del_9p21.3	2.49e-05	1
NFE2L2	Del_9p21.3	2.49e-07	1
RB1	TP53	2.49e-07	1
Del_9p23	Del_9p21.3	2.4e-30	1
8q-Amp	Amp_8q22.3	2.4e-34	1
Amp_11q13.3	Del_11q25	2.58e-05	1
18q-Del	9p-Del	2.58e-06	1
5q-Del	6q-Del	2.58e-07	1
Del_8p23.3	Del_15q13.1	2.63e-05	1
Del_11q23.3	Del_17p12	2.65e-08	1
11q-Del	Del_11p15.5	2.68e-09	1
9p-Del	Del_11p15.5	2.68e-09	1
18q-Del	Del_18q23	2.73e-29	1
Amp_20q11.21	Del_17p12	2.76e-05	1
10q-Del	22q-Del	2.81e-06	1
4p-Del	5q-Del	2.83e-06	1
18q-Del	5q-Del	2.85e-05	1
10q-Del	16p-Del	2.87e-05	1
22q-Del	6q-Del	2.87e-05	1
22q-Del	Del_15q13.1	2.87e-05	1
9q-Del	Amp_4p16.3	2.89e-07	1
19q-Amp	Amp_19q12	2.91e-08	1
11q-Del	Del_9p23	2.94e-06	1
Del_6q27	Del_8p23.3	2.96e-05	1
17p-Del	9p-Del	2.96e-09	1
20q-Amp	Amp_20q11.21	2.97e-33	1
Del_11p15.5	Del_18q23	2e-08	1
8p-Del	Del_2q34	3.05e-05	1
RB1	Del_16p13.3	3.06e-05	1
Del_5q12.1	Del_16p13.3	3.12e-05	1
6q-Del	Del_6q27	3.12e-28	1
Amp_3p25.2	Amp_22q12.2	3.13e-05	1
10q-Del	Del_22q13.32	3.14e-06	1
10q-Del	8p-Del	3.15e-05	1
Del_6q27	Del_14q24.1	3.17e-05	1
Del_8p23.3	Del_22q13.32	3.1e-05	1
17q-Amp	Amp_17q12	3.1e-08	1
8p-Del	Del_8p21.3	3.21e-39	1
FGFR3	KDM6A	3.22e-05	1
KDM6A	STAG2	3.22e-05	1
Del_9p21.3	Del_11q25	3.25e-05	1
11p-Del	18q-Del	3.25e-10	1
17p-Del	4q-Del	3.27e-07	1
11q-Del	Del_3p14.2	3.33e-05	1
Del_11p15.5	Del_11q23.3	3.35e-06	1
9p-Del	Amp_4p16.3	3.35e-09	1
Del_2q37.1	Del_16q23.1	3.37e-05	1
Del_11p15.5	Del_Xq21.33	3.41e-05	1
Del_5q12.1	Del_10q23.31	3.41e-06	1
Del_2q37.1	Del_10q23.31	3.42e-07	1
11p-Del	Del_11q23.3	3.47e-09	1
8p-Del	Del_2q37.1	3.66e-05	1
1q-Amp	Amp_1q23.3	3.69e-07	1
5q-Del	Del_5q12.1	3.78e-17	1
Del_16p13.3	Del_22q13.32	3.79e-05	1
17p-Del	Del_11p15.5	3.79e-06	1
Del_4q34.2	Del_10q23.31	3.82e-05	1
Del_6q27	Del_22q13.32	3.84e-07	1
11p-Del	9q-Del	3.86e-11	1
Del_6p25.3	Del_6q27	3.87e-06	1
Del_2q22.1	Del_2q37.1	3.88e-09	1
TP53	Del_4q34.2	3.93e-05	1
5q-Del	Del_8p23.3	3.93e-05	1
3p-Amp	Amp_3p25.2	3e-04	1
Del_3p14.2	Del_4q34.2	4.01e-07	1
11q-Del	9p-Del	4.03e-09	1
Del_5q12.1	Del_14q24.1	4.06e-06	1
6q-Del	Del_17p12	4.08e-05	1
5p-Amp	Amp_5p15.33	4.15e-35	1
9p-Del	Del_5q12.1	4.1e-05	1
10q-Del	Del_2q37.1	4.1e-06	1
14q-Del	4q-Del	4.27e-05	1
6q-Del	Del_6p25.3	4.27e-06	1
22q-Del	Del_2q34	4.31e-05	1
Del_3p14.2	Del_9p23	4.31e-05	1
4p-Del	Del_4q34.2	4.33e-10	1
15q-Del	4q-Del	4.37e-05	1
Del_8p21.3	Del_11p15.5	4.3e-05	1
Del_10q23.31	Del_16p13.3	4.46e-06	1
11p-Del	Del_9p23	4.4e-10	1
Del_2q34	Del_2q37.1	4.67e-44	1
8p-Del	Del_5q12.1	4.73e-05	1
Del_11p15.5	Del_17p12	4.76e-09	1
14q-Del	Del_14q24.1	4.79e-25	1
7q-Amp	Amp_7p21.1	4.83e-13	1
17p-Del	4p-Del	4.86e-06	1
Amp_8p11.21	Amp_19q13.43	4.97e-05	1
18q-Del	Del_11p15.5	4.97e-08	1
Del_6q27	Del_10q23.31	5.02e-06	1
17p-Del	Del_11q23.3	5.08e-06	1
10q-Del	15q-Del	5.15e-05	1
17p-Del	Del_9p21.3	5.15e-05	1
Amp_3p25.2	Amp_8q22.3	5.16e-09	1
Del_8p21.3	Del_22q13.32	5.27e-05	1
Amp_3p25.2	Amp_7p21.1	5.29e-06	1
Amp_3p25.2	Amp_8p11.21	5.32e-05	1
3p-Amp	Amp_3q26.33	5.33e-08	1
6q-Del	8p-Del	5.37e-06	1
5q-Del	Del_19p13.3	5.53e-05	1
Del_2q37.1	Del_8p23.3	5.56e-06	1
15q-Del	Del_22q13.32	5.57e-05	1
10q-Del	Del_10q23.31	5.61e-17	1
11q-Del	Del_9p21.3	5.6e-05	1
9p-Del	Del_11q23.3	5.78e-07	1
6q-Del	Del_15q13.1	5.91e-05	1
Del_2q34	Del_8p23.3	5.94e-05	1
15q-Del	22q-Del	5.98e-05	1
18q-Del	Del_9p23	5.9e-06	1
11p-Del	6q-Del	6.05e-05	1
11p-Del	Del_18q23	6.06e-08	1
Del_9p23	Del_11q23.3	6.14e-05	1
Amp_8q22.3	Amp_10p14	6.1e-05	1
16p-Del	Del_8p23.3	6.2e-05	1
Amp_6p22.3	Amp_10p14	6.2e-07	1
Del_8p21.3	Del_19p13.3	6.31e-05	1
Del_2q37.1	Del_11p15.5	6.33e-05	1
11p-Del	Del_11q25	6.37e-10	1
Del_11q23.3	Del_11q25	6.3e-38	1
22q-Del	5q-Del	6.46e-05	1
TP53	Amp_6p22.3	6.48e-05	1
11q-Del	Del_11q25	6.51e-24	1
Del_3p14.2	Del_15q13.1	6.54e-05	1
18q-Del	6q-Del	6.65e-05	1
11q-Del	9q-Del	6.65e-08	1
Del_8p21.3	Del_17p12	6.68e-06	1
Del_6q27	Del_8p21.3	6.6e-07	1
Amp_11q13.3	Del_11q23.3	6.76e-05	1
9p-Del	Del_9p23	6.76e-44	1
Del_2q34	Del_4q34.2	6.89e-05	1
Amp_7p21.1	Amp_7p11.2	6.8e-18	1
5q-Del	Del_6q27	6.97e-06	1
Del_6q27	Del_19p13.3	6.97e-06	1
Del_3p14.2	Del_19p13.3	6.98e-07	1
Del_2q34	Del_16q23.1	6.99e-05	1
Del_14q24.1	Del_22q13.32	6.9e-06	1
4p-Del	Del_5q12.1	7.06e-05	1
9q-Del	Del_9p23	7.13e-26	1
17p-Del	Del_9p23	7.16e-06	1
Amp_3p25.2	Amp_6p22.3	7.21e-06	1
Del_4q22.1	Del_4q34.2	7.21e-15	1
Amp_8p11.23	Amp_8p11.21	7.2e-16	1
4q-Del	Del_4q34.2	7.41e-15	1
18q-Del	4p-Del	7.43e-05	1
Amp_8p11.21	Amp_8q22.3	7.56e-14	1
10q-Del	6q-Del	7.5e-06	1
Del_8p23.3	Del_8p21.3	7.65e-56	1
1q-Amp	Amp_1q21.3	7.66e-09	1
9p-Del	Del_9p21.3	7.73e-26	1
11q-Del	Del_11q23.3	7.81e-23	1
Del_4q34.2	Del_8p21.3	7.86e-05	1
Amp_11q13.3	Amp_11q22.2	7.8e-05	1
RB1	5p-Amp	7.99e-05	1
9p-Del	Del_11q25	8.05e-05	1
Del_8p21.3	Del_15q13.1	8.13e-06	1
11p-Del	Del_5q12.1	8.18e-08	1
17p-Del	9q-Del	8.18e-08	1
Del_13q14.2	Del_16q23.1	8.32e-05	1
Del_6q27	Del_15q13.1	8.33e-05	1
Amp_19q12	Amp_19q13.43	8.34e-07	1
11p-Del	9p-Del	8.39e-14	1
Amp_1q23.3	Amp_19q12	8.44e-06	1
4p-Del	Del_4q22.1	8.45e-12	1
Del_2q37.1	Del_16p13.3	8.48e-07	1
15q-Del	Del_8p23.3	8.55e-05	1
9q-Del	Del_17p12	8.65e-07	1
4p-Del	6q-Del	8.67e-05	1
15q-Del	5q-Del	8.69e-07	1
20p-Amp	Amp_20q11.21	8.69e-30	1
FGFR3	STAG2	8.83e-06	1
Del_2q37.1	Del_6q27	8.89e-06	1
Del_2q34	Del_10q23.31	9.13e-05	1
Del_4q34.2	Del_6q27	9.14e-08	1
4q-Del	Del_4q22.1	9.25e-17	1
11p-Del	17p-Del	9.2e-08	1
Amp_5p15.33	Del_5q12.1	9.35e-05	1
Del_6q27	Del_16p13.3	9.3e-06	1
Del_8p23.3	Del_14q24.1	9.55e-05	1
Del_2q37.1	Del_22q13.32	9.65e-05	1
11q-Del	Del_17p12	9.71e-06	1
Del_5q12.1	Del_19p13.3	9.73e-05	1
9p-Del	Del_2q37.1	9.74e-06	1
Amp_6p22.3	Del_8p21.3	9.77e-05	1
8p-Del	Del_16p13.3	9.82e-06	1
Del_2q37.1	Del_8p21.3	9.83e-07	1
Amp_1q23.3	Amp_3p25.2	9.84e-08	1
Del_5q12.1	Del_11p15.5	9.86e-07	1
Del_8p21.3	Del_10q23.31	9.87e-06	1
