
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_mergedClustering/broadinstitute.org/cancer.genome.analysis/10572/2/merger_clustering.R")
> result <- main("-w/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/BRCA-TP/19775035/GDAC_CNMFselectcluster_19791430/BRCA-TP.bestclus.txt", "-y/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/BRCA-TP/19775032/GDAC_selectBestcluster_19779705/BRCA-TP.bestclus.txt", "-c/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/BRCA-TP/19775039/GDAC_CNMFselectcluster_19785195/BRCA-TP.bestclus.txt", "-d/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/BRCA-TP/19775045/GDAC_selectBestcluster_19779742/BRCA-TP.bestclus.txt", "-g/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/BRCA-TP/19793507/GDAC_CNMFselectcluster_19796478/BRCA-TP.bestclus.txt", "-a/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/BRCA-TP/19775036/GDAC_CNMFselectcluster_19791891/BRCA-TP.bestclus.txt", "-iBRCA-TP", "-b/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/BRCA-TP/20123895/GDAC_CNMFselectcluster_20125367/BRCA-TP.bestclus.txt", "-j/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/BRCA-TP/20123894/GDAC_selectBestcluster_20124108/BRCA-TP.bestclus.txt", "-l/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/BRCA-TP/19793496/GDAC_CNMFselectcluster_19844885/BRCA-TP.bestclus.txt", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/BRCA-TP/19775048/GDAC_selectBestcluster_19781220/BRCA-TP.bestclus.txt", "-n/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/BRCA-TP/19793504/GDAC_CNMFselectcluster_19796491/BRCA-TP.bestclus.txt", "-p/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/BRCA-TP/19775030/GDAC_selectBestcluster_19780558/BRCA-TP.bestclus.txt")
[1] "**** cluster demension ***"
[1] "dim(together):"
[1] 1098   13
> q(save="no")
