[1] "ofn"        "-oTBRCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/BRCA-TP/19775058/BRCA-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BRCA-TP/19785968/transformed.cor.cli.txt"

nPatients in clinical file=1098, in cluster file=1080, common to both=1080
[1]   69 1080
[1] "AMP PEAK  1(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          250                           830 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          250                           830 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          781                           299 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          781                           299 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        789                         291 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        789                         291 
[1] "AMP PEAK  4(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          198                           882 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          198                           882 
[1] "AMP PEAK  5(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           340                            740 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           340                            740 
[1] "AMP PEAK  6(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          163                           917 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          163                           917 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           394                            686 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           394                            686 
[1] "AMP PEAK  8(6P23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        299                         781 
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        299                         781 
[1] "AMP PEAK  9(6Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        202                         878 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        202                         878 
[1] "AMP PEAK 10(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           412                            668 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           412                            668 
[1] "AMP PEAK 11(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           421                            659 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           421                            659 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           678                            402 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           678                            402 
[1] "AMP PEAK 13(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           304                            776 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           304                            776 
[1] "AMP PEAK 14(10Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           150                            930 
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           150                            930 
[1] "AMP PEAK 15(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         223                          857 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         223                          857 
[1] "AMP PEAK 16(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           398                            682 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           398                            682 
[1] "AMP PEAK 17(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           267                            813 
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           267                            813 
[1] "AMP PEAK 18(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            282                             798 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            282                             798 
[1] "AMP PEAK 19(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         276                          804 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         276                          804 
[1] "AMP PEAK 20(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         179                          901 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         179                          901 
[1] "AMP PEAK 21(14Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           220                            860 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           220                            860 
[1] "AMP PEAK 22(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           194                            886 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           194                            886 
[1] "AMP PEAK 23(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           147                            933 
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           147                            933 
[1] "AMP PEAK 24(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         333                          747 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         333                          747 
[1] "AMP PEAK 25(17Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           426                            654 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           426                            654 
[1] "AMP PEAK 26(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                            230                             850 
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                            230                             850 
[1] "AMP PEAK 27(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         284                          796 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         284                          796 
[1] "AMP PEAK 28(19Q13.42) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                            276                             804 
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                            276                             804 
[1] "AMP PEAK 29(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                           548                            532 
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                           548                            532 
[1] "DEL PEAK  1(1P36.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           452                            628 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           452                            628 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          362                           718 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          362                           718 
[1] "DEL PEAK  3(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          317                           763 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          317                           763 
[1] "DEL PEAK  4(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           347                            733 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           347                            733 
[1] "DEL PEAK  5(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          339                           741 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          339                           741 
[1] "DEL PEAK  6(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                          345                           735 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                          345                           735 
[1] "DEL PEAK  7(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          280                           800 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          280                           800 
[1] "DEL PEAK  8(5Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          272                           808 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          272                           808 
[1] "DEL PEAK  9(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          204                           876 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          204                           876 
[1] "DEL PEAK 10(6Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        358                         722 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        358                         722 
[1] "DEL PEAK 11(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        375                         705 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        375                         705 
[1] "DEL PEAK 12(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          137                           943 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          137                           943 
[1] "DEL PEAK 13(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          200                           880 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          200                           880 
[1] "DEL PEAK 14(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          558                           522 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          558                           522 
[1] "DEL PEAK 15(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           200                            880 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           200                            880 
[1] "DEL PEAK 16(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        325                         755 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        325                         755 
[1] "DEL PEAK 17(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          364                           716 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          364                           716 
[1] "DEL PEAK 18(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           294                            786 
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           294                            786 
[1] "DEL PEAK 19(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          297                           783 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          297                           783 
[1] "DEL PEAK 20(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            320                             760 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            320                             760 
[1] "DEL PEAK 21(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           319                            761 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           319                            761 
[1] "DEL PEAK 22(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           309                            771 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           309                            771 
[1] "DEL PEAK 23(11Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                           241                            839 
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                           241                            839 
[1] "DEL PEAK 24(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                           547                            533 
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                           547                            533 
[1] "DEL PEAK 25(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                         513                          567 
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                         513                          567 
[1] "DEL PEAK 26(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                           188                            892 
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                           188                            892 
[1] "DEL PEAK 27(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           201                            879 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           201                            879 
[1] "DEL PEAK 28(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            211                             869 
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            211                             869 
[1] "DEL PEAK 29(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           495                            585 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           495                            585 
[1] "DEL PEAK 30(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           353                            727 
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           353                            727 
[1] "DEL PEAK 31(15Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                           375                            705 
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                           375                            705 
[1] "DEL PEAK 32(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                           693                            387 
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                           693                            387 
[1] "DEL PEAK 33(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         650                          430 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         650                          430 
[1] "DEL PEAK 34(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                            371                             709 
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                            371                             709 
[1] "DEL PEAK 35(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                         354                          726 
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                         354                          726 
[1] "DEL PEAK 36(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                           363                            717 
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                           363                            717 
[1] "DEL PEAK 37(19Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                            216                             864 
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                            216                             864 
[1] "DEL PEAK 38(20P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                         160                          920 
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                         160                          920 
[1] "DEL PEAK 39(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                           217                            863 
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                           217                            863 
[1] "DEL PEAK 40(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                            492                             588 
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                            492                             588 
[1] "data2feature, selection=ALL"
 [1] "YEARS_TO_BIRTH"                      
 [2] "VITAL_STATUS"                        
 [3] "DAYS_TO_DEATH"                       
 [4] "DAYS_TO_LAST_FOLLOWUP"               
 [5] "TUMOR_TISSUE_SITE"                   
 [6] "PATHOLOGIC_STAGE"                    
 [7] "PATHOLOGY_T_STAGE"                   
 [8] "PATHOLOGY_N_STAGE"                   
 [9] "PATHOLOGY_M_STAGE"                   
[10] "GENDER"                              
[11] "DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS"
[12] "DAYS_TO_LAST_KNOWN_ALIVE"            
[13] "RADIATION_THERAPY"                   
[14] "HISTOLOGICAL_TYPE"                   
[15] "NUMBER_OF_LYMPH_NODES"               
[16] "RACE"                                
[17] "ETHNICITY"                           

Input Data has 17 rows and 1080 columns.

[1] "Last Follow UP"
Variable 1:'YEARS_TO_BIRTH':	nDistinctValues=65,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITAL_STATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYS_TO_DEATH':	nDistinctValues=143,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DAYS_?TO', vnms) to deal with survival parameters seperately"
Variable 4:'DAYS_TO_LAST_FOLLOWUP':	nDistinctValues=755,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('FOLLOWUP', vnms) to deal with survival parameters seperately"
Variable 5:'TUMOR_TISSUE_SITE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "TUMOR_TISSUE_SITE is excluded in the analysis because there is no more than two cases of (unique non-NA values)"
Variable 6:'PATHOLOGIC_STAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY_T_STAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY_N_STAGE':	nDistinctValues=16,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY_M_STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DATE', vnms) to deal with survival parameters seperately"
Variable 12:'DAYS_TO_LAST_KNOWN_ALIVE':	nDistinctValues=3,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DAYS_?TO', vnms) to deal with survival parameters seperately"
Variable 13:'RADIATION_THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'HISTOLOGICAL_TYPE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NUMBER_OF_LYMPH_NODES':	nDistinctValues=31,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RACE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'ETHNICITY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "************ conversion from categorical data to rank data ********** "
[1] "PATHOLOGY_T_STAGE is converted to numeric rank data using modified categoies"
[1] "PATHOLOGY_N_STAGE is converted to numeric rank data using modified categoies"
[1] "PATHOLOGY_M_STAGE is converted to rank data using modified categoies"
[1] "****** SUMMARY ***** "
Output Data has 1080 columns, 1 survival variables, and 11 non-survival variables.
[1] "* survival variables: "
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "* non-survival variables: "
 [1] "YEARS_TO_BIRTH"        "PATHOLOGIC_STAGE"      "PATHOLOGY_T_STAGE"    
 [4] "PATHOLOGY_N_STAGE"     "PATHOLOGY_M_STAGE"     "GENDER"               
 [7] "RADIATION_THERAPY"     "HISTOLOGICAL_TYPE"     "NUMBER_OF_LYMPH_NODES"
[10] "RACE"                  "ETHNICITY"            
YEARS_TO_BIRTH, nv=65, binary=FALSE, numeric=TRUE
PATHOLOGIC_STAGE, nv=13, binary=FALSE, numeric=FALSE
PATHOLOGY_T_STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
276 624 136  40 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
276 624 136  40 
$ClinVariableName
[1] "PATHOLOGY_T_STAGE"

$Table
vv
 T1  T2  T3  T4 
276 624 136  40 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
276 624 136  40 
PATHOLOGY_N_STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
507 358 119  77 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
507 358 119  77 
$ClinVariableName
[1] "PATHOLOGY_N_STAGE"

$Table
vv
 N0  N1  N2  N3 
507 358 119  77 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
507 358 119  77 
PATHOLOGY_M_STAGE, nv=2, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
RADIATION_THERAPY, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL_TYPE, nv=8, binary=FALSE, numeric=FALSE
NUMBER_OF_LYMPH_NODES, nv=31, binary=FALSE, numeric=TRUE
RACE, nv=4, binary=FALSE, numeric=FALSE
ETHNICITY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P22.3) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  1(1P22.3) MUTATED   213  36
  AMP PEAK  1(1P22.3) WILD-TYPE 704 111
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          249                           815 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           36                           111 
$`AMP PEAK  1(1P22.3) MUTATED`
TCGA-3C-AAAU TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SM TCGA-A1-A0SP 
      129.14         9.96        14.37        43.43         7.96        19.20 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CM TCGA-A2-A0CU TCGA-A2-A0D0 
       73.84        87.25       101.98        24.79         5.19        67.33 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0ET TCGA-A2-A0SW TCGA-A2-A0T2 TCGA-A2-A0T5 
       33.76        61.58        35.05        44.88         8.38        17.46 
TCGA-A2-A0T7 TCGA-A2-A0YD TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YM TCGA-A2-A1G0 
       20.75        25.28        49.48        19.33        31.73        20.25 
TCGA-A2-A25B TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3XZ 
       42.44        33.93        91.07        29.98        47.31        50.37 
TCGA-A2-A3Y0 TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       50.83        35.31        35.67        31.73        20.19        25.15 
TCGA-A7-A26F TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       24.26        14.50        21.17        10.29         9.37        10.42 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A08C TCGA-A8-A08T 
       26.01         1.02         9.99         7.99        28.96       112.08 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09E TCGA-A8-A09I 
       30.97        17.95        12.00         9.99        49.05        45.07 
TCGA-A8-A09M TCGA-A8-A09W TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-AC-A2BK TCGA-AC-A2BM 
       33.07         0.99        21.04        17.03        73.05        99.35 
TCGA-AC-A2QJ TCGA-AC-A3EH TCGA-AC-A3QQ TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       14.66         6.48        24.13        16.57        19.79        14.53 
TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OQ 
       13.71        18.67        13.58         1.68         0.03         1.12 
TCGA-AN-A03Y TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0FF TCGA-AN-A0FL TCGA-AN-A0FT 
        0.33         1.71         7.46         5.65         7.59         7.04 
TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XU TCGA-AO-A0J2 TCGA-AO-A0J6 
        0.36         0.33         0.33         0.33        32.78        37.48 
TCGA-AO-A0J8 TCGA-AO-A0JL TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A12F TCGA-AQ-A04L 
       22.36        55.33        99.25       106.78        48.36       130.09 
TCGA-AQ-A54N TCGA-AR-A0TS TCGA-AR-A0U0 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AQ 
        2.56        84.10        65.36       125.16       108.36        99.32 
TCGA-AR-A1AR TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24Z 
       17.23        61.28        33.73       160.90        50.89        98.66 
TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-B6-A0I1 TCGA-B6-A0I2 
       93.83        66.15        40.54        57.27        77.62       143.38 
TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IJ TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RN 
       12.13       129.57       233.62       140.88       255.68       263.28 
TCGA-B6-A0RP TCGA-B6-A0RU TCGA-B6-A0WX TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A2IU 
      102.77       282.90        21.47        43.59       101.52       170.17 
TCGA-B6-A400 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40C TCGA-BH-A0AW 
        7.07        70.16        68.12        18.84        71.15        20.45 
TCGA-BH-A0B3 TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0DL 
       39.55        37.22        18.21        49.05        44.02        78.28 
TCGA-BH-A0DP TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0EE 
       15.65        67.86        16.27         4.41         9.63        31.00 
TCGA-BH-A0GY TCGA-BH-A0HK TCGA-BH-A18L TCGA-BH-A18S TCGA-BH-A18V TCGA-BH-A1F0 
       30.35         5.85        26.66        66.05        51.16        25.81 
TCGA-BH-A1F2 TCGA-BH-A1FC TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FU 
       31.53       114.15        63.35        55.00        72.07        72.07 
TCGA-BH-A28Q TCGA-BH-A5IZ TCGA-C8-A12P TCGA-C8-A12V TCGA-C8-A131 TCGA-C8-A26Y 
        6.44        18.64        11.77        12.66        13.51        12.95 
TCGA-C8-A274 TCGA-C8-A27B TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A142 TCGA-D8-A143 
        9.53        14.43        13.41        56.81        13.97        14.17 
TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JL TCGA-D8-A1X7 TCGA-D8-A1XA TCGA-D8-A1XG 
       19.20        55.50        20.09        16.73        27.58        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XW 
       21.80        14.50        16.41        15.85        16.64        43.04 
TCGA-D8-A27H TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A14R 
       13.05        10.09        12.53        12.66        34.42        38.60 
TCGA-E2-A14X TCGA-E2-A150 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15D TCGA-E2-A15J 
       31.96        63.62        25.05        23.34        17.29        53.92 
TCGA-E2-A15R TCGA-E2-A1AZ TCGA-E2-A1BD TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1L7 
       56.94        76.57        37.25        33.70        22.19        60.36 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A2P6 TCGA-E9-A1N8 TCGA-E9-A1ND 
       28.90       106.75       102.61        34.55        34.16        41.62 
TCGA-E9-A1NE TCGA-E9-A1R5 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RG TCGA-E9-A1RH 
       35.77         3.02        32.09        40.24        21.27        46.59 
TCGA-E9-A22B TCGA-E9-A244 TCGA-E9-A249 TCGA-E9-A3QA TCGA-E9-A54Y TCGA-E9-A5UP 
       38.37         0.69         7.13        30.18        23.84        26.40 
TCGA-E9-A6HE TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OZ TCGA-EW-A1P0 
       27.85        15.68        25.94        22.82        40.41        41.13 
TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A423 TCGA-EW-A6SB TCGA-GI-A2C8 TCGA-GI-A2C9 
        7.86        19.99        10.16        24.99         7.40       109.87 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DH TCGA-GM-A3NY TCGA-GM-A4E0 TCGA-HN-A2NL 
       83.34        75.02        72.10        38.20        72.03         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LL-A441 
       62.47        11.84        11.57        13.22         7.10        32.75 
TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A7SZ 
       17.06        14.47        22.26        16.08        15.68        19.53 
TCGA-OL-A5D8 TCGA-OL-A5RW TCGA-OL-A66K TCGA-OL-A6VO TCGA-PL-A8LZ TCGA-S3-A6ZF 
       31.99        36.36        41.92        28.21         9.93        18.81 
TCGA-S3-AA10 TCGA-UU-A93S TCGA-WT-AB44 
       19.27         3.81        29.03 

$`AMP PEAK  1(1P22.3) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
        8.52        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79        39.32        28.01        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
       78.41       121.94        63.12        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12       114.81        92.48        88.60       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D4 
       75.25        98.99       107.93        56.81        34.55        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72        89.36        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       99.19        54.64        27.12        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YE 
       17.13        49.84        20.52        18.90        32.55        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YL TCGA-A2-A0YT 
       50.47        21.90        21.67        18.61        48.46        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A1G4 
       23.47        17.36        60.72        22.45        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       16.47        52.47       107.70        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY 
       10.59        36.23        39.65        32.75        56.28        35.93 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G 
       33.11        29.79        23.61        29.56        31.36        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.29        11.28        13.41        14.70        11.97        14.93 
TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       13.74        17.92        14.73        12.10        10.72        11.05 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
        8.75        13.02        13.02         1.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       29.03        31.00        17.03        53.98         9.01        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       19.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 
       10.98         8.98        24.99         9.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        33.01        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A09A 
       33.01        43.00        40.01        33.01        41.98         9.99 
TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q 
       12.00         1.02        50.04        29.98         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
        8.98        19.04        15.02        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
       13.02         0.99        27.02        38.04         0.95        22.95 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       73.91         5.72         1.48        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN 
       32.45        16.31        14.83        22.19        25.05        14.99 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5XS 
       15.48        23.24        24.79        29.26        16.80        19.33 
TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IX TCGA-AC-A7VB TCGA-AC-A8OP 
       14.96        11.44        17.42        12.26         8.22        20.19 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
        1.32         2.30         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR 
        2.96         1.78         9.96         7.36         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FN 
        0.33         0.33         6.44         7.96         7.00         7.17 
TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        6.90         0.33         0.33         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW 
        0.30         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       47.87        58.95        29.13        21.40        52.18        26.04 
TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       20.32        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM 
       76.77        65.10        26.24        50.24        62.04        71.80 
TCGA-AO-A124 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
      115.27       108.72       108.03        90.58        98.27        64.04 
TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       57.30        41.62        40.57        14.73        82.62        61.87 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 
       70.39         0.53        17.79        24.79        26.93         5.65 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ 
       15.62        32.52        32.91        19.20       140.55        98.33 
TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY 
        5.26       109.02        75.22        98.93        64.83        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AJ 
      107.24       133.22        83.87       134.14       107.21       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      103.86        97.68        98.33        96.00        86.07        93.90 
TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24L TCGA-AR-A24M 
       37.81        94.29        86.53        86.43        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 
      105.27        77.69       105.30        32.58        98.76        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH 
       99.62        93.30        85.64        71.05       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A5QM 
       86.53        54.21        63.62        38.17        39.39        73.35 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC 
       33.30        38.96        10.59       281.29       275.87        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
       65.72       146.50       112.37        18.77       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      165.76       129.07        68.45       212.25       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RV 
       78.02       162.05       140.48       100.70        89.46       157.41 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ 
       97.48       188.68        79.63        18.35       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KI 
      129.70       245.10        28.27        68.94        58.88        73.51 
TCGA-B6-A1KN TCGA-B6-A3ZX TCGA-B6-A401 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AV 
      139.17        37.87        85.35       103.63        62.93        59.84 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 
       25.55        63.09        81.44        40.83        39.16        70.22 
TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BG 
       81.63        84.13        51.68        32.02        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C0 
       76.60        53.95        45.57        49.94        77.95        41.75 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        45.83        77.98        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       29.98        13.91        17.26         3.22         2.56        38.47 
TCGA-BH-A0DX TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       70.88        15.68        14.30        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.49        24.43        10.78        15.16        37.78        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       24.56        23.08        41.00        52.96        26.50        20.38 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18T 
       72.56        37.74        30.28        55.63        37.55         7.36 
TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.39        67.50        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F5 TCGA-BH-A1F6 
       12.00        55.69        49.58        17.69        89.16        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       24.62       120.62        33.17        74.73       122.89        36.92 
TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       45.63       144.59        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       57.83       130.16        10.65        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ 
       20.88        23.51         9.63         5.26         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       21.76         9.44        11.93        11.77        11.77        12.66 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
        3.16         1.87        12.59        12.92         4.11         4.08 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       10.42        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       12.36         8.28         9.67         0.03         9.50        24.56 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Z 
       33.99        12.95        13.02        12.49        19.46        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.25        20.58        13.48        21.14        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       16.50        15.78        18.15        18.90        12.03        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN 
       14.01        18.97        20.09        20.12        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF 
       25.74        23.90        18.15        12.39        17.16        15.22 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV 
       19.92        17.69        55.30        16.31        12.99        15.16 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       17.42        16.04        13.45        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27W TCGA-D8-A3Z5 
       13.48         4.80         1.61        13.08        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 
       18.51        21.67        16.18        25.22        43.00        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       46.59        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T 
       47.15        44.68        40.96        38.24        33.17        75.98 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 
       43.33        34.26        32.02        69.34        18.51        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15C 
       23.24        19.43        21.04        23.87        14.79        22.82 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15K 
       20.71        21.63        18.21        12.92        55.63         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        50.79        19.56        14.07        51.39 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       53.62        87.22        33.01        32.35        28.50        16.47 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK 
       77.65        37.41        70.36        33.73        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 
        3.88        60.99        11.08        54.18        73.64        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LG TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 
       24.59        75.81        50.07         8.75        43.04        26.99 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 
       43.56         8.28        30.61        34.92        38.76        34.29 
TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 
       17.69        34.82        32.88        36.82        22.29        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       36.56        39.55        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R6 
       24.82        28.27        34.95         2.56         6.12        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RI 
       48.23        45.01         1.12        46.65         6.58        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D 
       34.45        32.05        42.25        37.74        39.09        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 
       41.72        40.73        40.50        20.12        38.99         1.94 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-EW-A1IW 
       30.44        23.90        26.70         0.79        25.81        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 
       28.77        29.95        29.85        39.78        52.96        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD 
       23.11        18.48        30.08        18.90         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       10.52        14.43        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 TCGA-EW-A6S9 
       25.91        22.09        34.03        17.49        23.51        15.22 
TCGA-EW-A6SA TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       16.77        31.30        33.21        59.57       216.76        79.10 
TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       70.85        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A5PV 
       85.35       110.50        43.73        69.30        66.38        13.55 
TCGA-GM-A5PX TCGA-LD-A66U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 
       18.12        21.24        13.28        10.62        24.95        29.23 
TCGA-LL-A50Y TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A73Z 
       25.05        15.32        14.70        14.79         2.63         7.46 
TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U 
       14.50        12.36        19.59        17.49        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
        2.10        36.30        58.52        58.62        40.08        34.92 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ 
       65.62        42.77        26.04        17.36        14.07        19.73 
TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX 
       40.11         8.91        47.01        64.21        86.96         0.16 
TCGA-PL-A8LY TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 
        0.26        18.48        21.07        20.68        13.84        18.87 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-W8-A86G 
       17.39        17.26        13.94        17.03        66.84        11.41 
TCGA-WT-AB41 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        15.35        16.04       108.07       107.05 

  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                         0.03                          0.03 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                       282.90                        281.29 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                        26.66                         28.14 
[1] "0.0 - 282.9 (26.7)" "0.0 - 281.3 (28.1)"
[1] "hr=" "1"  
D1V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  1(1P22.3) MUTATED        13       20        1        1        95
  AMP PEAK  1(1P22.3) WILD-TYPE      76       65        5        5       258
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  1(1P22.3) MUTATED          56         0         29         10
  AMP PEAK  1(1P22.3) WILD-TYPE       196         2        125         19
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  1(1P22.3) MUTATED           15        6         0       3
  AMP PEAK  1(1P22.3) WILD-TYPE         50       14         1      10
D1V3, multiclass
            clus
vv           AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  STAGE I                             13                            76
  STAGE IA                            20                            65
  STAGE IB                             1                             5
  STAGE II                             1                             5
  STAGE IIA                           95                           258
  STAGE IIB                           56                           196
  STAGE III                            0                             2
  STAGE IIIA                          29                           125
  STAGE IIIB                          10                            19
  STAGE IIIC                          15                            50
  STAGE IV                             6                            14
  STAGE TIS                            0                             1
  STAGE X                              3                            10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  AMP PEAK  1(1P22.3) MUTATED    46 155  36  11
  AMP PEAK  1(1P22.3) WILD-TYPE 230 469 100  29
D1V4, multiclass
    clus
vv   AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  T1                          46                           230
  T2                         155                           469
  T3                          36                           100
  T4                          11                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  AMP PEAK  1(1P22.3) MUTATED   137  68  21  20
  AMP PEAK  1(1P22.3) WILD-TYPE 370 290  98  57
D1V5, multiclass
    clus
vv   AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  N0                         137                           370
  N1                          68                           290
  N2                          21                            98
  N3                          20                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V6, binary
                               cls
clus                              0   1
  AMP PEAK  1(1P22.3) MUTATED   202   6
  AMP PEAK  1(1P22.3) WILD-TYPE 687  16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED    202    6
  AMP PEAK  1(1P22.3) WILD-TYPE  687   16
   clus
vv  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  0                         202                           687
  1                           6                            16
[1] 2 2
[1] FALSE
D1V7, binary
                               cls
clus                              0   1
  AMP PEAK  1(1P22.3) MUTATED   248   2
  AMP PEAK  1(1P22.3) WILD-TYPE 820  10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED    248    2
  AMP PEAK  1(1P22.3) WILD-TYPE  820   10
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  FEMALE                         248                           820
  MALE                             2                            10
[1] 2 2
[1] FALSE
D1V8, binary
                               cls
clus                              0   1
  AMP PEAK  1(1P22.3) MUTATED   105 118
  AMP PEAK  1(1P22.3) WILD-TYPE 324 400
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED    105  118
  AMP PEAK  1(1P22.3) WILD-TYPE  324  400
     clus
vv    AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  NO                          105                           324
  YES                         118                           400
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  AMP PEAK  1(1P22.3) MUTATED                            0
  AMP PEAK  1(1P22.3) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  1(1P22.3) MUTATED                             183
  AMP PEAK  1(1P22.3) WILD-TYPE                           587
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  1(1P22.3) MUTATED                               38
  AMP PEAK  1(1P22.3) WILD-TYPE                            162
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  1(1P22.3) MUTATED                     3                     3
  AMP PEAK  1(1P22.3) WILD-TYPE                   3                     6
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  1(1P22.3) MUTATED                                  7
  AMP PEAK  1(1P22.3) WILD-TYPE                               22
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  1(1P22.3) MUTATED                    2             14
  AMP PEAK  1(1P22.3) WILD-TYPE                 15             33
D1V9, multiclass
                                  clus
vv                                 AMP PEAK  1(1P22.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            183
  INFILTRATING LOBULAR CARCINOMA                            38
  MEDULLARY CARCINOMA                                        3
  METAPLASTIC CARCINOMA                                      3
  MIXED HISTOLOGY (PLEASE SPECIFY)                           7
  MUCINOUS CARCINOMA                                         2
  OTHER  SPECIFY                                            14
                                  clus
vv                                 AMP PEAK  1(1P22.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              587
  INFILTRATING LOBULAR CARCINOMA                             162
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        6
  MIXED HISTOLOGY (PLEASE SPECIFY)                            22
  MUCINOUS CARCINOMA                                          15
  OTHER  SPECIFY                                              33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  1(1P22.3) MUTATED                                  0     9
  AMP PEAK  1(1P22.3) WILD-TYPE                                1    51
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  1(1P22.3) MUTATED                          54   166
  AMP PEAK  1(1P22.3) WILD-TYPE                       127   579
D1V11, multiclass
                                  clus
vv                                 AMP PEAK  1(1P22.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      9
  BLACK OR AFRICAN AMERICAN                                 54
  WHITE                                                    166
                                  clus
vv                                 AMP PEAK  1(1P22.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       51
  BLACK OR AFRICAN AMERICAN                                  127
  WHITE                                                      579
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V12, binary
                               cls
clus                              0   1
  AMP PEAK  1(1P22.3) MUTATED     8 203
  AMP PEAK  1(1P22.3) WILD-TYPE  31 672
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED      8  203
  AMP PEAK  1(1P22.3) WILD-TYPE   31  672
                        clus
vv                       AMP PEAK  1(1P22.3) MUTATED
  HISPANIC OR LATINO                               8
  NOT HISPANIC OR LATINO                         203
                        clus
vv                       AMP PEAK  1(1P22.3) WILD-TYPE
  HISPANIC OR LATINO                                31
  NOT HISPANIC OR LATINO                           672
[1] 2 2
[1] FALSE

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
D2V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  2(1Q21.3) MUTATED   667 105
  AMP PEAK  2(1Q21.3) WILD-TYPE 250  42
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          772                           292 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          105                            42 
$`AMP PEAK  2(1Q21.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      129.14       131.67        40.14        48.56        48.36         9.96 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       14.37        43.43        48.10        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P 
        7.96        39.32        28.01        19.20        18.21        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CQ TCGA-A2-A0CS 
       36.13       136.73        24.79       114.81        88.60        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 
       75.25         5.19        98.99        56.81        67.33        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0ET 
       61.58        25.22       101.72        89.36        80.28        35.05 
TCGA-A2-A0EV TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       31.82        63.29        99.19        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.52         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       20.25        42.44        17.19        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       33.93        91.07        29.98        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG 
       50.83         7.30        21.14        38.30        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E 
       35.47        30.61        35.67        33.11        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H 
       25.15        23.61        29.56        31.36        24.26        23.80 
TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A425 
       21.73        20.61        10.59        10.29        11.28        14.70 
TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       11.97        13.74        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       12.10        10.72        11.05        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y 
        8.75        13.02         1.02        29.03        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G 
        1.02        53.98         9.01        19.99        18.97        18.97 
TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U 
       14.01        32.05         9.99         8.98         7.99        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
        9.99        45.07        15.06         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S 
       19.96        37.05         9.99        31.00         0.99        33.01 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 
      112.08        43.00        40.01        30.97        17.95        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E 
       12.00         9.99         9.99        12.00         1.02        49.05 
TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W 
       45.07        29.98        25.02         8.98        15.02         0.99 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB 
       12.00        19.04        13.02        21.04        27.02        17.03 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72         1.48        73.05        99.35 
TCGA-AC-A2FE TCGA-AC-A2FG TCGA-AC-A2FM TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       86.66        60.92        26.04        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN 
        6.48        16.31        14.83        24.13        25.05        14.99 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EI 
       16.57        19.79        15.48        24.79        29.26        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX 
       19.33        13.71        17.42        18.67        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y 
        1.68         0.03        20.19         1.12         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.23         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        7.46         0.16         0.33         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        7.59         7.17         6.90         7.04         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.33         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N 
        0.30         0.33         0.33         5.59        80.28        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       81.63        95.70        68.75        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JJ 
       50.70        72.00        76.77        65.10        26.24        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A129 
       55.33        71.80       115.27        99.25       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KP 
       90.58        98.27        64.04        48.36        41.62        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J 
       61.87        70.39         0.53        17.79        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 
      130.09         5.65        32.52         2.56        32.91        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TW 
      140.55        98.33         5.26        84.10       109.02        98.93 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       107.21       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AP TCGA-AR-A1AQ 
      101.00       103.86        97.68        96.00        93.90        99.32 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24H 
       17.23        37.81        61.28        86.53        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24P TCGA-AR-A24R 
       50.89        94.22       120.33        99.78         2.76       112.77 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
      105.27        77.69        32.58        98.76        98.66        89.00 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LJ 
       93.30        85.64        71.05        93.83       166.42        86.53 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       54.21        66.15        63.62        38.17        39.39        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I1 TCGA-B6-A0I2 
       57.27        73.35        33.30        38.96        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IH 
      281.29        12.13       275.87       129.57        65.72       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      233.62        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RN TCGA-B6-A0RO 
       68.45       212.25       234.28        81.17       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WT TCGA-B6-A0WV 
      102.77       100.70        89.46       282.90       188.68        79.63 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X7 
       18.35        21.47       129.70       245.10        28.27        58.88 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A400 
       43.59       101.52        73.51       139.17       170.17         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        70.16        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA 
       40.83        39.55        70.22        81.63        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       61.68        75.48        74.14        53.95        45.57        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       77.95        49.05        44.02        89.06        90.97        45.83 
TCGA-BH-A0DG TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS 
       23.44        13.91        78.28        17.26        15.65         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E6 
       38.47        67.86        70.88         4.41        15.68         9.63 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0GZ 
       46.19        32.58        24.49        31.00        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HK 
       15.16        37.78        23.08        41.00        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY 
        2.50        13.61        36.85        12.89        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18K 
        5.59        23.93        32.91         4.90        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       26.66        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EU TCGA-BH-A1EV 
       51.39        51.16        67.50        91.99        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FD 
       55.69        49.58        25.81        97.48       114.15        33.17 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A201 
       63.35        55.00        45.63        72.07        72.07        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A209 TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       26.14        38.60       130.16         6.44        20.12        10.52 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-AB28 
       18.64        23.51         9.63         5.26         9.70         9.44 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V 
       11.93        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 
       12.66        48.53        12.56         3.16        13.51        12.92 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
        4.08        12.33        11.34        11.28         0.16        12.03 
TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
       10.42        12.33        12.95        12.36        12.95         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        9.67         9.53         0.03        14.43        33.99        12.95 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       12.49        13.41        20.88        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       14.17        21.14        19.20        14.17        17.49        16.50 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JI 
       55.50        15.78        18.15        18.90        12.03        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS 
       20.09        20.12        20.09        19.40        20.38        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XA 
       13.32        14.70        18.58        16.73        25.74        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK 
       18.15        12.39        15.22        14.73        21.80        14.50 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        55.30        16.41        15.85        16.31 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-D8-A1Y3 
       12.99        15.16        43.04        16.54         9.93        14.14 
TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       13.45        14.43        48.03         4.80         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A73U 
       13.08        12.53        12.26        33.37        18.51        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       12.66        25.22        34.42        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       38.24        38.60        75.98        31.96        69.34        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A158 TCGA-E2-A159 
       63.62        69.96        23.24        19.43        14.79        25.05 
TCGA-E2-A15A TCGA-E2-A15D TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A15K 
       23.34        17.29        18.21        12.92        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       20.58        11.05        56.94        51.39        76.57        53.62 
TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ 
       37.25        37.41        70.36        33.73        33.70        28.44 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 
        3.88        22.19        54.18        60.36        73.64        19.66 
TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 
       24.59        50.07       106.75       102.61         8.75        26.99 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1ND 
       17.69        22.29        34.16        36.20        36.56        41.62 
TCGA-E9-A1NE TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R3 
       35.77        18.94         9.86        24.82        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        6.12         3.02        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A227 TCGA-E9-A22A 
        1.12         6.58        21.27        46.59        32.05        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
        0.69        38.99         7.13        24.56        12.33        29.72 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FK 
       38.07        32.91        30.18        30.44        23.84        26.70 
TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1J2 TCGA-EW-A1J3 
       26.40        27.85        12.20         8.48        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY 
       15.68        28.77        25.94        22.82        29.95        29.85 
TCGA-EW-A1P0 TCGA-EW-A1P3 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PE 
       41.13        52.96         7.86        19.99         6.15        10.52 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3U0 
       19.96        55.00        52.73        25.91        22.09        17.49 
TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SB TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       10.16        23.51        24.99         7.40       109.87        59.57 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DN TCGA-GM-A3NW 
       83.34        75.02        70.85        72.10       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
        2.60        62.47        11.84        11.57        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LL-A441 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
        7.10        13.28        32.75        25.05        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR 
       14.70        14.47        14.79        22.26         2.63        16.08 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-MS-A51U 
       15.68         7.46        19.53        19.59        17.49        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
        2.10        58.52        31.99        58.62        40.08        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A66L 
       36.36        28.87        20.38        23.47        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PE-A5DE 
       26.04        17.36        28.21        19.73         8.91        86.96 
TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 
        9.93        18.81        18.48        21.07        20.68        19.27 
TCGA-S3-AA11 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 
       13.84        13.94        17.03         3.81        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35       108.07       107.05 

$`AMP PEAK  2(1Q21.3) WILD-TYPE`
TCGA-3C-AALJ TCGA-4H-AAAK TCGA-A1-A0SB TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A2-A04N 
       42.81        11.44         8.52        14.27        47.24       143.15 
TCGA-A2-A04V TCGA-A2-A0CL TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CW TCGA-A2-A0D1 
       63.12        99.12        92.48       107.93       107.93        34.55 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EW 
      118.45        79.76        74.40        72.00        34.29        61.94 
TCGA-A2-A0EX TCGA-A2-A0SU TCGA-A2-A0T1 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 
       24.72        54.64        17.13        19.20        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3XV TCGA-A2-A3XW 
       52.47       107.70        18.15       105.34        32.75        56.28 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0D9 
       24.39        21.30        23.21        26.96        21.90        37.45 
TCGA-A7-A0DC TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3RF TCGA-A7-A4SA 
       29.79        23.74        22.32        11.34        13.41        14.93 
TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A075 TCGA-A8-A07B TCGA-A8-A07J 
       13.02        17.98        53.06        17.03        43.00        12.00 
TCGA-A8-A07P TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08O 
       10.98        36.95        13.02        33.01        12.00        31.00 
TCGA-A8-A091 TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09T TCGA-A8-A09X 
       33.01        50.04        33.07         1.02        19.04        14.01 
TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FK 
        0.99        38.04         0.95        40.57        90.71        87.12 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A3QP TCGA-AC-A3YI TCGA-AC-A5EH TCGA-AC-A5XU 
       74.14        33.04        22.19        23.24        16.80        14.96 
TCGA-AC-A62V TCGA-AC-A7VB TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A049 
       11.44         8.22         1.32         2.30         0.33         0.62 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV 
        0.33         0.33         6.44         0.33         0.33         5.33 
TCGA-AO-A03M TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0JC TCGA-AO-A0JI 
       61.35        47.87        58.95        29.13        50.86        50.24 
TCGA-AO-A126 TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AQ-A1H2 TCGA-AR-A0TV 
      108.72        57.30        40.57        14.73        15.62        75.22 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U3 TCGA-AR-A1AM TCGA-AR-A1AO 
       64.83        55.86       107.24       134.14        98.33        86.07 
TCGA-AR-A1AU TCGA-AR-A1AX TCGA-AR-A24O TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24V 
       94.29        86.43       118.59       104.28        97.84       105.30 
TCGA-AR-A251 TCGA-AR-A2LH TCGA-AR-A5QQ TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IK 
       99.62        20.25        10.59        50.70       146.50        18.77 
TCGA-B6-A0IM TCGA-B6-A0RM TCGA-B6-A0RQ TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WY 
      127.33        78.02       140.48       157.41        97.48       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X5 TCGA-B6-A3ZX TCGA-BH-A0B4 TCGA-BH-A0B7 TCGA-BH-A0BO 
      206.86        68.94        37.87        39.16        84.13        72.23 
TCGA-BH-A0BR TCGA-BH-A0C0 TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DQ 
       76.60        41.75        77.98        38.01        29.98         3.22 
TCGA-BH-A0DZ TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EI TCGA-BH-A0H5 TCGA-BH-A0H6 
       16.27        14.30        44.81        24.43        53.26        24.56 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HW TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       52.96        26.50        51.32        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A1ES TCGA-BH-A1ET 
       23.05        35.93        72.56        37.74       113.82        82.85 
TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FE 
       17.69        31.53        89.16        24.62       120.62        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FR TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A28O 
      122.89        36.92       144.59        83.31        57.83        10.65 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12N TCGA-C8-A12U 
      109.28        20.88        18.87        21.76        11.77        12.66 
TCGA-C8-A12X TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HF TCGA-C8-A1HO 
       12.66         1.87        12.59         4.11        10.92        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A8HP TCGA-C8-A9FZ 
       20.25        12.53         9.50        24.56        13.02        19.46 
TCGA-D8-A13Y TCGA-D8-A145 TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JP TCGA-D8-A1X6 
       56.81        13.48        53.00        14.01        21.01        17.79 
TCGA-D8-A1X9 TCGA-D8-A1XD TCGA-D8-A1XT TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y2 
       23.90        17.16        16.64        15.32        15.52        14.24 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A4Z1 
       17.42        16.04        13.05        16.41        13.48        21.67 
TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       43.00        27.52        33.17        43.33        34.26        32.02 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15I 
       21.04        23.87        22.82        20.71        21.63        55.63 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15S TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       50.79        19.56        14.07        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IK TCGA-E2-A1IO TCGA-E2-A1IU 
       28.50        16.47        77.65        59.18        60.99        11.08 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LL TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 
       75.81        28.90        43.04        34.29        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1NC TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1R0 TCGA-E9-A1R6 
       36.82        39.55        35.24        25.84        28.27        11.15 
TCGA-E9-A1RE TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A248 
       46.65        47.64        34.45        42.25        37.74         1.94 
TCGA-E9-A2JT TCGA-E9-A54X TCGA-E9-A5FL TCGA-E9-A5UO TCGA-EW-A1IX TCGA-EW-A1IZ 
        9.47        23.90         0.79        25.81        39.72        18.21 
TCGA-EW-A1J1 TCGA-EW-A1OZ TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       18.90        40.41        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A3E8 
       30.08        18.90        13.94        14.43        34.55        34.03 
TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GM-A2DA TCGA-GM-A2DB 
       15.22        16.77        31.30        33.21       216.76        79.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DO TCGA-GM-A3XG 
       85.15        86.96       115.69       106.06        85.35        43.73 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LQ-A4E4 
       10.62        24.95        29.23        14.50        12.36        27.91 
TCGA-OL-A5D6 TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66P 
       36.30        24.72        22.32        26.70        65.62        14.07 
TCGA-OL-A6VR TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-AA12 
       40.11        47.01        64.21         0.16         0.26        18.87 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-V7-A7HQ TCGA-XX-A89A 
       17.39        17.26        66.84        16.04 

  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                         0.03                          0.16 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                       282.90                        216.76 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                        26.32                         30.54 
[1] "0.0 - 282.9 (26.3)" "0.2 - 216.8 (30.5)"
[1] "hr=" "1"  
D2V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  2(1Q21.3) MUTATED        57       58        3        4       269
  AMP PEAK  2(1Q21.3) WILD-TYPE      32       27        3        2        84
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  2(1Q21.3) MUTATED         175         1        108         25
  AMP PEAK  2(1Q21.3) WILD-TYPE        77         1         46          4
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  2(1Q21.3) MUTATED           51       15         1       9
  AMP PEAK  2(1Q21.3) WILD-TYPE         14        5         0       4
D2V3, multiclass
            clus
vv           AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  STAGE I                             57                            32
  STAGE IA                            58                            27
  STAGE IB                             3                             3
  STAGE II                             4                             2
  STAGE IIA                          269                            84
  STAGE IIB                          175                            77
  STAGE III                            1                             1
  STAGE IIIA                         108                            46
  STAGE IIIB                          25                             4
  STAGE IIIC                          51                            14
  STAGE IV                            15                             5
  STAGE TIS                            1                             0
  STAGE X                              9                             4
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  AMP PEAK  2(1Q21.3) MUTATED   182 460 101  35
  AMP PEAK  2(1Q21.3) WILD-TYPE  94 164  35   5
D2V4, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  T1                         182                            94
  T2                         460                           164
  T3                         101                            35
  T4                          35                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  AMP PEAK  2(1Q21.3) MUTATED   372 253  82  61
  AMP PEAK  2(1Q21.3) WILD-TYPE 135 105  37  16
D2V5, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  N0                         372                           135
  N1                         253                           105
  N2                          82                            37
  N3                          61                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V6, binary
                               cls
clus                              0   1
  AMP PEAK  2(1Q21.3) MUTATED   643  16
  AMP PEAK  2(1Q21.3) WILD-TYPE 246   6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED    643   16
  AMP PEAK  2(1Q21.3) WILD-TYPE  246    6
   clus
vv  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  0                         643                           246
  1                          16                             6
[1] 2 2
[1] FALSE
D2V7, binary
                               cls
clus                              0   1
  AMP PEAK  2(1Q21.3) MUTATED   775   6
  AMP PEAK  2(1Q21.3) WILD-TYPE 293   6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED    775    6
  AMP PEAK  2(1Q21.3) WILD-TYPE  293    6
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  FEMALE                         775                           293
  MALE                             6                             6
[1] 2 2
[1] FALSE
D2V8, binary
                               cls
clus                              0   1
  AMP PEAK  2(1Q21.3) MUTATED   309 379
  AMP PEAK  2(1Q21.3) WILD-TYPE 120 139
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED    309  379
  AMP PEAK  2(1Q21.3) WILD-TYPE  120  139
     clus
vv    AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  NO                          309                           120
  YES                         379                           139
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  AMP PEAK  2(1Q21.3) MUTATED                            1
  AMP PEAK  2(1Q21.3) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  2(1Q21.3) MUTATED                             553
  AMP PEAK  2(1Q21.3) WILD-TYPE                           217
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  2(1Q21.3) MUTATED                              156
  AMP PEAK  2(1Q21.3) WILD-TYPE                             44
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  2(1Q21.3) MUTATED                     5                     4
  AMP PEAK  2(1Q21.3) WILD-TYPE                   1                     5
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  2(1Q21.3) MUTATED                                 18
  AMP PEAK  2(1Q21.3) WILD-TYPE                               11
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  2(1Q21.3) MUTATED                    9             35
  AMP PEAK  2(1Q21.3) WILD-TYPE                  8             12
D2V9, multiclass
                                  clus
vv                                 AMP PEAK  2(1Q21.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            553
  INFILTRATING LOBULAR CARCINOMA                           156
  MEDULLARY CARCINOMA                                        5
  METAPLASTIC CARCINOMA                                      4
  MIXED HISTOLOGY (PLEASE SPECIFY)                          18
  MUCINOUS CARCINOMA                                         9
  OTHER  SPECIFY                                            35
                                  clus
vv                                 AMP PEAK  2(1Q21.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              217
  INFILTRATING LOBULAR CARCINOMA                              44
  MEDULLARY CARCINOMA                                          1
  METAPLASTIC CARCINOMA                                        5
  MIXED HISTOLOGY (PLEASE SPECIFY)                            11
  MUCINOUS CARCINOMA                                           8
  OTHER  SPECIFY                                              12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  2(1Q21.3) MUTATED                                  0    39
  AMP PEAK  2(1Q21.3) WILD-TYPE                                1    21
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  2(1Q21.3) MUTATED                         130   546
  AMP PEAK  2(1Q21.3) WILD-TYPE                        51   199
D2V11, multiclass
                                  clus
vv                                 AMP PEAK  2(1Q21.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     39
  BLACK OR AFRICAN AMERICAN                                130
  WHITE                                                    546
                                  clus
vv                                 AMP PEAK  2(1Q21.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       21
  BLACK OR AFRICAN AMERICAN                                   51
  WHITE                                                      199
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V12, binary
                               cls
clus                              0   1
  AMP PEAK  2(1Q21.3) MUTATED    23 633
  AMP PEAK  2(1Q21.3) WILD-TYPE  16 242
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED     23  633
  AMP PEAK  2(1Q21.3) WILD-TYPE   16  242
                        clus
vv                       AMP PEAK  2(1Q21.3) MUTATED
  HISPANIC OR LATINO                              23
  NOT HISPANIC OR LATINO                         633
                        clus
vv                       AMP PEAK  2(1Q21.3) WILD-TYPE
  HISPANIC OR LATINO                                16
  NOT HISPANIC OR LATINO                           242
[1] 2 2
[1] FALSE

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
D3V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  3(1Q44) MUTATED   680 100
  AMP PEAK  3(1Q44) WILD-TYPE 237  47
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        780                         284 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        100                          47 
$`AMP PEAK  3(1Q44) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI 
        9.96        14.37        43.43        48.10        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ 
       13.68         7.96        39.32        28.01        19.20        18.21 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       18.02        78.41        73.84        87.25       101.98        55.43 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CQ TCGA-A2-A0CS TCGA-A2-A0CT 
       36.13       136.73       114.81        88.60        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 
        5.19        98.99       107.93        56.81        67.33        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EQ 
       61.58        25.22       101.72        89.36        80.28        79.76 
TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW 
       35.05        31.82        63.29        99.19        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 
       50.43        44.28        17.52        17.13        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A25A TCGA-A2-A25B 
       23.77        22.45        20.25        19.20       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       17.19        18.15       105.34        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RY 
       91.07        29.98        47.31        50.37         7.30        21.30 
TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        38.30        35.31        34.29        35.47        30.61 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G 
       35.67        33.11        31.73        20.19        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J 
       29.56        31.36        23.74        23.80        21.73        20.61 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.59        10.29        11.28        14.70        11.97        14.93 
TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       13.74        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O 
       10.72        11.05         9.37        10.42         8.75        13.02 
TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
        1.02        53.06        29.03        26.01         1.02        17.03 
TCGA-A8-A079 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07O 
        9.01        19.99        18.97        18.97        14.01         9.99 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 
        8.98         7.99        24.99         9.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G 
       36.95         0.99        38.01        28.96        33.01        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T 
       12.00        37.05         9.99        31.00        33.01       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 
       43.00        40.01        30.97        17.95        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
        9.99        12.00         1.02        49.05        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 
       33.07        25.02         8.98        15.02         0.99        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       19.04        21.04        27.02        17.03        38.04         0.95 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72         1.48        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FG TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI 
       40.57        86.66        60.92        26.04        74.14        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QQ 
       14.66        32.45         6.48        16.31        14.83        24.13 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YJ 
       25.05        14.99        16.57        19.79        15.48        24.79 
TCGA-AC-A4ZE TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X 
       29.26        14.53        19.33        14.96        11.44        13.71 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       17.42        18.67        13.58        12.26         1.68         8.22 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
        0.03        20.19         1.12         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.33         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        7.46         0.16         0.33         0.33         6.44         5.65 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN 
        0.36         0.33         0.33         0.33         5.36         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N 
       12.33         0.30         0.33         5.59        80.28        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J5 
       81.63        95.70        68.75        32.78        52.18        26.04 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JD TCGA-AO-A0JE 
       20.32        22.36        53.03        21.53        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       65.10        26.24        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
       99.25       106.78       108.03        90.58        98.27        64.04 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR 
       57.30        48.36        41.62        82.62        61.87        70.39 
TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 
        0.53        17.79        24.79        26.93       130.09         5.65 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR 
       32.52         2.56        32.91        19.20       140.55         5.26 
TCGA-AR-A0TS TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 
       84.10        65.36       133.22        83.87       134.14       107.21 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      125.16       108.36       101.00       103.86        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AY 
       96.00        93.90        37.81        61.28        86.53        33.73 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24P TCGA-AR-A24Q 
       50.89        94.22       120.33        99.78         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      112.77       105.27        77.69        32.58        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        86.53        54.21        66.15        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP 
       39.39        40.54        57.27        73.35        33.30        38.96 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
       77.62       143.38       281.29        12.13       275.87       129.57 
TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
       65.72       112.37       233.62        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      140.88       255.68        68.45       212.25       234.28        81.17 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT 
      263.28       162.05       102.77       140.48       100.70        89.46 
TCGA-B6-A0RU TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ 
      282.90       188.68        79.63        18.35        21.47       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
      129.70       245.10        58.88        43.59       101.52        73.51 
TCGA-B6-A2IU TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
      170.17         7.07        85.35        70.16        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B6 
       63.09        81.44        40.83        39.55        70.22        81.63 
TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       84.13        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 
       53.95        45.57        49.94        77.95        49.05        44.02 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK 
       89.06        90.97        45.83        23.44        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       78.28        17.26        15.65         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EA 
       67.86        70.88        15.68         9.63        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       24.49        31.00        30.35        10.78        15.16        37.78 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       23.08        41.00        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       36.85        12.89        27.25        50.79         5.59        23.93 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P 
       32.91         4.90        90.84        26.66        72.56        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN 
       55.63        37.55        66.05         7.36        51.39        67.50 
TCGA-BH-A1EO TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       91.99        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FJ TCGA-BH-A1FL 
       25.81        31.53        97.48       114.15        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       45.63        72.07        72.07        28.14        26.14        38.60 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A5IZ 
      130.16        10.65         6.44        20.12        10.52        18.64 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 
       23.51         9.63         5.26         9.70        21.76         9.44 
TCGA-C8-A12L TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       11.93        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A138 
       48.53        12.56         3.16        13.51        12.92         4.08 
TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V 
       11.28        12.03        10.42        12.33        12.95        20.25 
TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A27B TCGA-C8-A3M7 
       12.36         8.28         9.67         9.53        14.43        33.99 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-D8-A13Z TCGA-D8-A140 
       12.95        13.02        12.49        13.41        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        21.14        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        55.50        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       12.03        18.97        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 
       12.20        13.32        14.70        18.58        16.73        25.74 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.80 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS 
       14.50        19.92        17.69        55.30        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 
       16.64        12.99        15.16        43.04        16.54        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
        9.93        14.14        13.45        13.05        14.43        48.03 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
        4.80         1.61        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A107 
       33.37        18.51        16.18        12.66        25.22        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       27.52        46.59        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14T 
       47.15        44.68        40.96        38.24        38.60        75.98 
TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       34.26        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15D 
       23.24        19.43        14.79        25.05        23.34        17.29 
TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       20.71        18.21        12.92        53.92         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B5 TCGA-E2-A1BD TCGA-E2-A1IF 
       11.05        76.57        53.62        32.35        37.25        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IL TCGA-E2-A1IN 
       70.36        33.73        33.70        28.44         3.88        22.19 
TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI 
       54.18        73.64        19.66        50.07       106.75       102.61 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       26.99        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       38.76        17.69        22.29        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 
       39.55        35.77        18.94         9.86        24.82        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        2.56         3.02        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 
        1.12         6.58        21.27        46.59        34.45        32.05 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       37.74        39.09        38.37        41.03        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.50        20.12         0.69        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A3X8 
       24.56        12.33        29.72        38.07        30.18        30.44 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IY 
       23.84        26.70        26.40        27.85        12.20         8.48 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       13.25        16.57        15.68        25.94        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P8 
       29.85        40.41        41.13        52.96        23.11         7.86 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       19.99         6.15        10.52        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA 
       25.91        22.09        10.16        23.51        15.22        16.77 
TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       24.99        31.30        33.21         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DN 
      216.76        83.34        75.02        70.85        72.10       101.62 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U 
       18.12         2.60        62.47        11.84        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LL-A441 TCGA-LL-A50Y TCGA-LL-A5YL 
       13.22         7.10        13.28        32.75        25.05        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ 
       15.32        14.70        14.47        14.79        22.26         2.63 
TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7SZ TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       16.08        15.68         7.46        19.53        17.49        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
       22.39         2.10        58.52        58.62        40.08        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A66L 
       36.36        28.87        20.38        23.47        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PE-A5DD 
       26.04        17.36        28.21        19.73         8.91        64.21 
TCGA-PE-A5DE TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z 
       86.96         9.93        18.81        18.48        21.07        20.68 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S 
       19.27        13.84        18.87        13.94        17.03         3.81 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       11.41        52.96        29.03        15.35       108.07       107.05 

$`AMP PEAK  3(1Q44) WILD-TYPE`
TCGA-4H-AAAK TCGA-A1-A0SB TCGA-A1-A0SG TCGA-A1-A0SK TCGA-A2-A04N TCGA-A2-A04R 
       11.44         8.52        14.27        31.79       143.15       121.94 
TCGA-A2-A04V TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0D1 
       63.12        99.12        24.79        92.48       107.93        34.55 
TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX 
      118.45        74.40        72.00        34.29        61.94        24.72 
TCGA-A2-A0SU TCGA-A2-A0T2 TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A1FV TCGA-A2-A1FW 
       54.64         8.38        50.47        21.90        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25F TCGA-A2-A3XV 
       60.72        19.56        16.47        52.47        10.59        32.75 
TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S0 TCGA-A2-A4S1 
       56.28        35.93        50.83        24.39        23.21        26.96 
TCGA-A2-A4S3 TCGA-A7-A0D9 TCGA-A7-A0DC TCGA-A7-A26F TCGA-A7-A2KD TCGA-A7-A3IY 
       21.90        37.45        29.79        24.26        22.32        11.34 
TCGA-A7-A3RF TCGA-A7-A6VV TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A076 
       13.41        10.29        13.02        17.98        31.00        53.98 
TCGA-A8-A07B TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A086 TCGA-A8-A08O 
       43.00        12.00        32.05        10.98        13.02        31.00 
TCGA-A8-A08R TCGA-A8-A091 TCGA-A8-A09A TCGA-A8-A09D TCGA-A8-A09N TCGA-A8-A09T 
        0.99        33.01         9.99        50.04         1.02        19.04 
TCGA-A8-A09X TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-AC-A2FF TCGA-AC-A2FK TCGA-AC-A2QH 
       14.01        13.02         0.99        90.71        87.12        33.04 
TCGA-AC-A3QP TCGA-AC-A3YI TCGA-AC-A5EH TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A049 
       22.19        23.24        16.80         1.32         2.30         0.62 
TCGA-AN-A0AR TCGA-AN-A0FJ TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.33         7.96         0.33         0.33         0.33         5.33 
TCGA-AO-A03M TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J6 
       61.35        47.87        58.95        29.13        21.40        37.48 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JI TCGA-AO-A126 TCGA-AO-A12H TCGA-AO-A1KO 
       50.70        50.86        50.24       108.72        40.57        14.73 
TCGA-AQ-A1H2 TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX 
       15.62        98.33       109.02        75.22        98.93        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AU 
       55.86       107.24        86.07        99.32        17.23        94.29 
TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24O TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A2LH 
       86.43       160.90       118.59        97.84       105.30        20.25 
TCGA-AR-A5QQ TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0RM 
       10.59        50.70       146.50        18.77       127.33        78.02 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WY TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KN 
      157.41        97.48       113.79        28.27        68.94       139.17 
TCGA-B6-A3ZX TCGA-BH-A0B4 TCGA-BH-A0B9 TCGA-BH-A0BR TCGA-BH-A0C0 TCGA-BH-A0DE 
       37.87        39.16        51.68        76.60        41.75        77.98 
TCGA-BH-A0DH TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EI 
       38.01        16.27         4.41        14.30        44.81        24.43 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HW TCGA-BH-A0W4 
       53.26        24.56        52.96        26.50        51.32        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18N 
       42.35        44.81        23.05        35.93        20.12        37.74 
TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB 
       51.16       113.82        82.85        89.16        24.62       120.62 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FR TCGA-BH-A204 
       33.17        74.73       122.89        36.92       144.59        83.31 
TCGA-BH-A208 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A8FZ TCGA-C8-A12M TCGA-C8-A12N 
       57.83       109.28        20.88        18.87        11.77        11.77 
TCGA-C8-A12Q TCGA-C8-A12X TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE 
       12.66        12.66         1.87        12.59         4.11        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HO TCGA-C8-A26W TCGA-C8-A26Y 
       10.92        11.34         0.16        12.33        12.53        12.95 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A145 
        0.03         9.50        24.56        19.46        56.81        13.48 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1X6 TCGA-D8-A1X9 
       53.00        14.01        20.12        20.09        17.79        23.90 
TCGA-D8-A1XD TCGA-D8-A1XQ TCGA-D8-A1XZ TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F 
       17.16        16.41        15.32        14.24        17.42        16.04 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A10A TCGA-E2-A14S 
       16.41        13.48        21.67        43.00        40.41        33.17 
TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15F 
       43.33        32.02        21.04        23.87        22.82        21.63 
TCGA-E2-A15I TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       55.63        50.79        19.56        56.94        14.07        51.39 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IK 
       87.22        33.01        28.50        16.47        77.65        59.18 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L7 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       60.99        11.08        60.36        24.59        75.81        28.90 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
        8.75        43.04        34.29        34.82        32.88        36.82 
TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R6 
       41.62        35.24        25.84        28.27         6.12        11.15 
TCGA-E9-A1RE TCGA-E9-A1RI TCGA-E9-A228 TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A54X 
       46.65        47.64        42.25         9.47        32.91        23.90 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J6 
        0.79        25.81        39.72        18.21        18.90        28.77 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PD 
       39.78        29.82        18.48        30.08        18.90        13.94 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-GM-A2DB TCGA-GM-A2DI 
       14.43        34.55        34.03        17.49        79.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DO TCGA-GM-A3XG TCGA-LD-A9QF 
       86.96       115.69       106.06        85.35        43.73        10.62 
TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-OL-A5D6 
       24.95        29.23        14.50        12.36        19.59        36.30 
TCGA-OL-A5D8 TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66P 
       31.99        24.72        22.32        26.70        65.62        14.07 
TCGA-OL-A6VR TCGA-PE-A5DC TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-AA14 TCGA-S3-AA15 
       40.11        47.01         0.16         0.26        17.39        17.26 
TCGA-V7-A7HQ TCGA-XX-A89A 
       66.84        16.04 

  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                       0.03                        0.03 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                      282.9                       160.9 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                      26.96                       29.51 
[1] "0.0 - 282.9 (27.0)" "0.0 - 160.9 (29.5)"
[1] "hr=" "1.3"
D3V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  3(1Q44) MUTATED        56       56        3        6       266
  AMP PEAK  3(1Q44) WILD-TYPE      33       29        3        0        87
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  3(1Q44) MUTATED         187         1        109         25
  AMP PEAK  3(1Q44) WILD-TYPE        65         1         45          4
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  3(1Q44) MUTATED           53       13         1       8
  AMP PEAK  3(1Q44) WILD-TYPE         12        7         0       5
D3V3, multiclass
            clus
vv           AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  STAGE I                           56                          33
  STAGE IA                          56                          29
  STAGE IB                           3                           3
  STAGE II                           6                           0
  STAGE IIA                        266                          87
  STAGE IIB                        187                          65
  STAGE III                          1                           1
  STAGE IIIA                       109                          45
  STAGE IIIB                        25                           4
  STAGE IIIC                        53                          12
  STAGE IV                          13                           7
  STAGE TIS                          1                           0
  STAGE X                            8                           5
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  AMP PEAK  3(1Q44) MUTATED   179 474 100  33
  AMP PEAK  3(1Q44) WILD-TYPE  97 150  36   7
D3V4, multiclass
    clus
vv   AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  T1                       179                          97
  T2                       474                         150
  T3                       100                          36
  T4                        33                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  AMP PEAK  3(1Q44) MUTATED   366 268  81  62
  AMP PEAK  3(1Q44) WILD-TYPE 141  90  38  15
D3V5, multiclass
    clus
vv   AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  N0                       366                         141
  N1                       268                          90
  N2                        81                          38
  N3                        62                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V6, binary
                             cls
clus                            0   1
  AMP PEAK  3(1Q44) MUTATED   646  14
  AMP PEAK  3(1Q44) WILD-TYPE 243   8
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(1Q44) MUTATED    646   14
  AMP PEAK  3(1Q44) WILD-TYPE  243    8
   clus
vv  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  0                       646                         243
  1                        14                           8
[1] 2 2
[1] FALSE
D3V7, binary
                             cls
clus                            0   1
  AMP PEAK  3(1Q44) MUTATED   780   9
  AMP PEAK  3(1Q44) WILD-TYPE 288   3
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(1Q44) MUTATED    780    9
  AMP PEAK  3(1Q44) WILD-TYPE  288    3
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  FEMALE                       780                         288
  MALE                           9                           3
[1] 2 2
[1] FALSE
D3V8, binary
                             cls
clus                            0   1
  AMP PEAK  3(1Q44) MUTATED   311 386
  AMP PEAK  3(1Q44) WILD-TYPE 118 132
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(1Q44) MUTATED    311  386
  AMP PEAK  3(1Q44) WILD-TYPE  118  132
     clus
vv    AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  NO                        311                         118
  YES                       386                         132
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  AMP PEAK  3(1Q44) MUTATED                            1
  AMP PEAK  3(1Q44) WILD-TYPE                          0
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  3(1Q44) MUTATED                             549
  AMP PEAK  3(1Q44) WILD-TYPE                           221
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  3(1Q44) MUTATED                              167
  AMP PEAK  3(1Q44) WILD-TYPE                             33
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  3(1Q44) MUTATED                     5                     5
  AMP PEAK  3(1Q44) WILD-TYPE                   1                     4
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  3(1Q44) MUTATED                                 20
  AMP PEAK  3(1Q44) WILD-TYPE                                9
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  3(1Q44) MUTATED                    9             33
  AMP PEAK  3(1Q44) WILD-TYPE                  8             14
D3V9, multiclass
                                  clus
vv                                 AMP PEAK  3(1Q44) MUTATED
  INFILTRATING CARCINOMA NOS                               1
  INFILTRATING DUCTAL CARCINOMA                          549
  INFILTRATING LOBULAR CARCINOMA                         167
  MEDULLARY CARCINOMA                                      5
  METAPLASTIC CARCINOMA                                    5
  MIXED HISTOLOGY (PLEASE SPECIFY)                        20
  MUCINOUS CARCINOMA                                       9
  OTHER  SPECIFY                                          33
                                  clus
vv                                 AMP PEAK  3(1Q44) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            221
  INFILTRATING LOBULAR CARCINOMA                            33
  MEDULLARY CARCINOMA                                        1
  METAPLASTIC CARCINOMA                                      4
  MIXED HISTOLOGY (PLEASE SPECIFY)                           9
  MUCINOUS CARCINOMA                                         8
  OTHER  SPECIFY                                            14
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  3(1Q44) MUTATED                                  1    35
  AMP PEAK  3(1Q44) WILD-TYPE                                0    25
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  3(1Q44) MUTATED                         133   554
  AMP PEAK  3(1Q44) WILD-TYPE                        48   191
D3V11, multiclass
                                  clus
vv                                 AMP PEAK  3(1Q44) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         1
  ASIAN                                                   35
  BLACK OR AFRICAN AMERICAN                              133
  WHITE                                                  554
                                  clus
vv                                 AMP PEAK  3(1Q44) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     25
  BLACK OR AFRICAN AMERICAN                                 48
  WHITE                                                    191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V12, binary
                             cls
clus                            0   1
  AMP PEAK  3(1Q44) MUTATED    24 639
  AMP PEAK  3(1Q44) WILD-TYPE  15 236
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(1Q44) MUTATED     24  639
  AMP PEAK  3(1Q44) WILD-TYPE   15  236
                        clus
vv                       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  HISPANIC OR LATINO                            24                          15
  NOT HISPANIC OR LATINO                       639                         236
[1] 2 2
[1] FALSE

Clustering(4) Variable = AMP PEAK  4(3P25.1) MUTATION ANALYSIS
D4V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  4(3P25.1) MUTATED   161  35
  AMP PEAK  4(3P25.1) WILD-TYPE 756 112
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          196                           868 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                           35                           112 
$`AMP PEAK  4(3P25.1) MUTATED`
TCGA-3C-AALI TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CM TCGA-A2-A0CS 
      131.67        28.01        73.84        87.25        24.79        77.19 
TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0SV TCGA-A2-A0T7 
       75.25        98.99       107.93        56.81        27.12        20.75 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A25E TCGA-A2-A4S3 TCGA-A7-A0CD 
       23.77        17.36        22.45       105.34        21.90        38.30 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A425 
       35.67        33.11        25.15        29.56        24.26        14.70 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A8-A06O TCGA-A8-A06Q 
       14.50        21.17        14.73        12.10        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A084 TCGA-A8-A08C 
       17.98        31.00        17.03         9.01        15.06        28.96 
TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08X 
       33.01        12.00        37.05         9.99        31.00        43.00 
TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       33.01        17.95        12.00         9.99        12.00        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09W 
       49.05        45.07        29.98        25.02         8.98         0.99 
TCGA-A8-A09X TCGA-AC-A23H TCGA-AC-A2FM TCGA-AC-A2QJ TCGA-AC-A5XU TCGA-AC-A8OP 
       14.01         5.72        26.04        14.66        14.96        20.19 
TCGA-AN-A03Y TCGA-AN-A049 TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FX TCGA-AN-A0FZ 
        0.33         0.62         0.33         0.33         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0JB 
        0.33        12.33        52.18        37.48        20.32        50.70 
TCGA-AO-A0JM TCGA-AO-A128 TCGA-AO-A12D TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A54O 
       71.80       106.78        64.04        17.79        24.79        32.91 
TCGA-AR-A0U2 TCGA-AR-A1AS TCGA-AR-A24K TCGA-AR-A24Q TCGA-AR-A24V TCGA-AR-A24Z 
       83.87        37.81        50.89       104.28       105.30        98.66 
TCGA-AR-A2LL TCGA-AR-A2LR TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0RE TCGA-B6-A0RP 
       66.15        57.27        12.13       275.87       255.68       102.77 
TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A401 
      100.70       282.90        79.63       245.10        43.59        85.35 
TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0BF 
       68.12        62.93        59.84        70.22        81.63        43.53 
TCGA-BH-A0BL TCGA-BH-A0BT TCGA-BH-A0C0 TCGA-BH-A0DS TCGA-BH-A0E2 TCGA-BH-A0E6 
       74.89        45.57        41.75         2.56        14.30         9.63 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0HI TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A18J 
       46.19        24.49        20.38        27.25        50.79        20.12 
TCGA-BH-A18N TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EV TCGA-BH-A1EW 
       37.74        37.55         7.36        51.39        12.00        55.69 
TCGA-BH-A1FC TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A5J0 
      114.15        45.63        72.07        26.14        38.60        23.51 
TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Z 
       11.77        12.66        12.66        12.66        12.66        12.56 
TCGA-C8-A130 TCGA-C8-A137 TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HM TCGA-C8-A278 
        3.16         4.11        11.34        11.28        12.33         9.50 
TCGA-D8-A13Y TCGA-D8-A1JF TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1XA TCGA-D8-A1XK 
       56.81        12.03        20.09        20.09        27.58        14.50 
TCGA-D8-A1XQ TCGA-D8-A1XV TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27H TCGA-D8-A27R 
       16.41        15.16        14.24        14.14        13.05        10.09 
TCGA-D8-A73X TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A14O TCGA-E2-A14R TCGA-E2-A14T 
       25.22        46.59        37.51        44.68        38.60        75.98 
TCGA-E2-A14Z TCGA-E2-A154 TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15L TCGA-E2-A15S 
       18.51        19.43        20.71        18.21        20.58        14.07 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1IH TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E9-A1N8 
       76.57        53.62        33.73        28.90        50.07        34.16 
TCGA-E9-A1N9 TCGA-E9-A1R4 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RF TCGA-E9-A1RG 
       36.20         6.12        32.09        40.24         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A2JS TCGA-E9-A54Y 
       46.59        41.72        40.73        20.12        29.72        23.84 
TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1PH TCGA-EW-A3U0 
       26.40        28.77        29.85        40.41        19.96        17.49 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A3XL TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FR 
       75.02        70.85        69.30        15.32        14.79        16.08 
TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-PE-A5DC TCGA-S3-A6ZF 
       19.59        58.52        47.01        18.81 

$`AMP PEAK  4(3P25.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN 
       47.24        20.88        13.68        31.79         7.96        39.32 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R 
       19.20        18.21       143.15        18.02        78.41       121.94 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CU TCGA-A2-A0D0 
      114.81        92.48        88.60       107.93         5.19        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72        89.36 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       80.28       118.45        79.76        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 
       54.64        44.88        50.43        44.28        17.52        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
        8.38        49.84        20.52        17.46        18.90        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI 
       25.28        18.21        50.47        21.90        21.67        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX 
       18.61        19.33        48.46        31.73        23.47        60.72 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       20.25        19.20        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       42.44        17.19        18.15        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       23.21        26.96        21.14        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G 
       30.61        37.45        29.79        31.73        20.19        23.61 
TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD 
       31.36        23.74        23.80        21.73        20.61        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 
       11.34        10.59        10.29        11.28        13.41        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV 
       14.93        13.74        17.92        10.72        11.05        10.29 
TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A06U 
        9.37        10.42         8.75        13.02        53.06        29.03 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
       26.01         1.02        53.98        43.00        19.99        18.97 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 
        8.98         7.99        24.99         9.99        45.07        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08G TCGA-A8-A08O TCGA-A8-A08R 
       13.02         0.99        38.01        19.96        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 
       33.01       112.08        40.01        30.97        41.98         9.99 
TCGA-A8-A09C TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A0A1 
        1.02        33.07         1.02        19.04        15.02        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       19.04        13.02        21.04         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04         0.95        22.95        73.91         1.48        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       74.14        33.04        19.33        32.45         6.48        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 
       14.83        22.19        24.13        25.05        14.99        16.57 
TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH 
       19.79        15.48        23.24        24.79        29.26        16.80 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV 
       14.53        19.33        11.44        13.71        17.42        18.67 
TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ 
       13.58        12.26         1.68         8.22         0.03         1.12 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A 
        1.32         2.30         0.33         0.23         0.33         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        1.78         1.71         9.96         7.36         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FY 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
        5.36         0.30         0.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O 
        5.33         5.59        80.28        61.35        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        47.87        58.95        29.13        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC 
       21.40        26.04        22.36        53.03        21.53        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       72.00        76.77        65.10        26.24        50.24        62.04 
TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A 
       55.33       115.27        99.25       108.72       108.03        90.58 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        57.30        48.36        41.62        40.57        14.73 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04J TCGA-AQ-A04L 
       82.62        61.87        70.39         0.53        26.93       130.09 
TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP 
        5.65        15.62        32.52         2.56        19.20       140.55 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW 
       98.33         5.26        84.10       109.02        75.22        98.93 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 
       64.83        55.86       107.24        65.36       133.22       134.14 
TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      107.21       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR 
       98.33        96.00        86.07        93.90        99.32        17.23 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R 
       94.22       120.33        99.78       118.59         2.76       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 
       97.84       105.27        77.69        32.58        98.76        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       99.62        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       40.54        73.35        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
      143.38       281.29       129.57        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      129.07       140.88        68.45       212.25       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV 
       78.02       263.28       162.05       140.48        89.46       157.41 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
       97.48       188.68        18.35        21.47       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI 
      129.70        28.27        68.94        58.88       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A402 TCGA-B6-A409 
      139.17       170.17        37.87         7.07        70.16        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
      103.63        71.15        20.45        25.55        63.09        81.44 
TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA 
       40.83        39.55        39.16        84.13        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       32.02        18.21        61.51        21.70        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW 
       75.48        74.14        76.60        53.95        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       49.05        44.02        89.06        90.97        45.83        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       23.44        38.01        29.98        13.91        78.28        17.26 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
       15.65         3.22        38.47        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI 
        4.41        15.68        44.81        32.58        31.00        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        37.78        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HO 
       23.08        41.00        52.96        26.50         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0RX TCGA-BH-A0W3 
       13.61        36.85        12.89        51.32         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18Q 
       35.93        90.84        26.66        72.56        30.28        55.63 
TCGA-BH-A18S TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       66.05        51.16        67.50        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 
       42.28        49.58        17.69        25.81        31.53        89.16 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        24.62       120.62        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       36.92        63.35        55.00       144.59        72.07        28.14 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 
       10.52       109.28        20.88        18.64         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N 
        9.70        18.87        21.76         9.44        11.93        11.77 
TCGA-C8-A12P TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A131 TCGA-C8-A132 
       11.77        12.66        12.66        48.53        13.51         1.87 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HJ 
       12.59        12.92         4.08        12.33        10.92         0.16 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        10.42        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95         8.28         9.67         9.53         0.03 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
       24.56        14.43        33.99        12.95        13.02        12.49 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       13.41        19.46        20.88        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       14.17        13.48        21.14        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG 
       16.50        55.50        15.78        18.15        18.90        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       14.01        18.97        20.12        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF 
       25.74        23.90        18.15        12.39        17.16        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR 
       14.73        21.80        19.92        17.69        55.30        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.31        16.64        12.99        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27I 
       15.52         9.93        17.42        16.04        13.45        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T 
       48.03        16.41        13.48         4.80         1.61        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       12.53        12.26        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10C 
       12.66        43.00        34.42        27.52        40.41        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S 
       28.44        28.87        47.15        40.96        38.24        33.17 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 
       43.33        34.26        32.02        31.96        69.34        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 
       69.96        23.24        21.04        23.87        14.79        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I 
       23.34        22.82        17.29        21.63        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        11.05        50.79        19.56        56.94 
TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       51.39        87.22        33.01        32.35        28.50        16.47 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ 
       37.25        77.65        37.41        70.36        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       59.18         3.88        22.19        60.99        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LH 
       60.36        73.64        19.66        24.59        75.81       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX 
      102.61         8.75        43.04        26.99        34.55        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU 
        8.28        30.61        34.92        38.76        34.29        17.69 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NC 
       34.82        32.88        36.82        22.29        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R6 
       24.82        28.27        34.95         2.56         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RI TCGA-E9-A226 
       48.23        45.01         1.12        46.65        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22H TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       40.50         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       12.33         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW 
       23.90        26.70         0.79        25.81        27.85        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 
       15.68        25.94        22.82        29.95        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       52.96        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF 
       18.90        19.99         6.15        13.94        10.52        14.43 
TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       34.55        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC 
       10.16        23.51        15.22        16.77        24.99        31.30 
TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       33.21         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       83.34        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN 
      101.62        85.35       110.50        38.20        43.73        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF 
       11.57        21.24        13.22         7.10        13.28        10.62 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN 
       24.95        32.75        29.23        25.05        17.06        14.70 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       14.47        22.26         2.63        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       19.53        12.36        17.49        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P 
       65.62        41.92        42.77        26.04        17.36        14.07 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE 
       28.21        19.73        40.11         8.91        64.21        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z 
        0.16         0.26         9.93        18.48        21.07        20.68 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       19.27        13.84        18.87        17.39        17.26        13.94 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       17.03         3.81        66.84        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                         0.33                          0.03 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                       282.90                        281.29 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                        26.76                         28.24 
[1] "0.3 - 282.9 (26.8)" "0.0 - 281.3 (28.2)"
[1] "hr=" "1.5"
D4V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  4(3P25.1) MUTATED        12       12        0        1        79
  AMP PEAK  4(3P25.1) WILD-TYPE      77       73        6        5       274
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  4(3P25.1) MUTATED          36         0         33         10
  AMP PEAK  4(3P25.1) WILD-TYPE       216         2        121         19
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  4(3P25.1) MUTATED            8        5         0       2
  AMP PEAK  4(3P25.1) WILD-TYPE         57       15         1      11
D4V3, multiclass
            clus
vv           AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  STAGE I                             12                            77
  STAGE IA                            12                            73
  STAGE IB                             0                             6
  STAGE II                             1                             5
  STAGE IIA                           79                           274
  STAGE IIB                           36                           216
  STAGE III                            0                             2
  STAGE IIIA                          33                           121
  STAGE IIIB                          10                            19
  STAGE IIIC                           8                            57
  STAGE IV                             5                            15
  STAGE TIS                            0                             1
  STAGE X                              2                            11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  AMP PEAK  4(3P25.1) MUTATED    37 132  15  13
  AMP PEAK  4(3P25.1) WILD-TYPE 239 492 121  27
D4V4, multiclass
    clus
vv   AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  T1                          37                           239
  T2                         132                           492
  T3                          15                           121
  T4                          13                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  AMP PEAK  4(3P25.1) MUTATED    95  55  32  12
  AMP PEAK  4(3P25.1) WILD-TYPE 412 303  87  65
D4V5, multiclass
    clus
vv   AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  N0                          95                           412
  N1                          55                           303
  N2                          32                            87
  N3                          12                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V6, binary
                               cls
clus                              0   1
  AMP PEAK  4(3P25.1) MUTATED   180   6
  AMP PEAK  4(3P25.1) WILD-TYPE 709  16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3P25.1) MUTATED    180    6
  AMP PEAK  4(3P25.1) WILD-TYPE  709   16
   clus
vv  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  0                         180                           709
  1                           6                            16
[1] 2 2
[1] FALSE
D4V7, binary
                               cls
clus                              0   1
  AMP PEAK  4(3P25.1) MUTATED   197   1
  AMP PEAK  4(3P25.1) WILD-TYPE 871  11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3P25.1) MUTATED    197    1
  AMP PEAK  4(3P25.1) WILD-TYPE  871   11
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  FEMALE                         197                           871
  MALE                             1                            11
[1] 2 2
[1] FALSE
D4V8, binary
                               cls
clus                              0   1
  AMP PEAK  4(3P25.1) MUTATED    77  98
  AMP PEAK  4(3P25.1) WILD-TYPE 352 420
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3P25.1) MUTATED     77   98
  AMP PEAK  4(3P25.1) WILD-TYPE  352  420
     clus
vv    AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  NO                           77                           352
  YES                          98                           420
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  AMP PEAK  4(3P25.1) MUTATED                            1
  AMP PEAK  4(3P25.1) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  4(3P25.1) MUTATED                             168
  AMP PEAK  4(3P25.1) WILD-TYPE                           602
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  4(3P25.1) MUTATED                               14
  AMP PEAK  4(3P25.1) WILD-TYPE                            186
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  4(3P25.1) MUTATED                     1                     2
  AMP PEAK  4(3P25.1) WILD-TYPE                   5                     7
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  4(3P25.1) MUTATED                                  5
  AMP PEAK  4(3P25.1) WILD-TYPE                               24
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  4(3P25.1) MUTATED                    1              6
  AMP PEAK  4(3P25.1) WILD-TYPE                 16             41
D4V9, multiclass
                                  clus
vv                                 AMP PEAK  4(3P25.1) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            168
  INFILTRATING LOBULAR CARCINOMA                            14
  MEDULLARY CARCINOMA                                        1
  METAPLASTIC CARCINOMA                                      2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           5
  MUCINOUS CARCINOMA                                         1
  OTHER  SPECIFY                                             6
                                  clus
vv                                 AMP PEAK  4(3P25.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              602
  INFILTRATING LOBULAR CARCINOMA                             186
  MEDULLARY CARCINOMA                                          5
  METAPLASTIC CARCINOMA                                        7
  MIXED HISTOLOGY (PLEASE SPECIFY)                            24
  MUCINOUS CARCINOMA                                          16
  OTHER  SPECIFY                                              41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  4(3P25.1) MUTATED                                  0    14
  AMP PEAK  4(3P25.1) WILD-TYPE                                1    46
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  4(3P25.1) MUTATED                          31   124
  AMP PEAK  4(3P25.1) WILD-TYPE                       150   621
D4V11, multiclass
                                  clus
vv                                 AMP PEAK  4(3P25.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     14
  BLACK OR AFRICAN AMERICAN                                 31
  WHITE                                                    124
                                  clus
vv                                 AMP PEAK  4(3P25.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       46
  BLACK OR AFRICAN AMERICAN                                  150
  WHITE                                                      621
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V12, binary
                               cls
clus                              0   1
  AMP PEAK  4(3P25.1) MUTATED     6 150
  AMP PEAK  4(3P25.1) WILD-TYPE  33 725
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3P25.1) MUTATED      6  150
  AMP PEAK  4(3P25.1) WILD-TYPE   33  725
                        clus
vv                       AMP PEAK  4(3P25.1) MUTATED
  HISPANIC OR LATINO                               6
  NOT HISPANIC OR LATINO                         150
                        clus
vv                       AMP PEAK  4(3P25.1) WILD-TYPE
  HISPANIC OR LATINO                                33
  NOT HISPANIC OR LATINO                           725
[1] 2 2
[1] FALSE

Clustering(5) Variable = AMP PEAK  5(3Q26.32) MUTATION ANALYSIS
D5V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  5(3Q26.32) MUTATED   291  45
  AMP PEAK  5(3Q26.32) WILD-TYPE 626 102
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           336                            728 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                            45                            102 
$`AMP PEAK  5(3Q26.32) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SO TCGA-A1-A0SP 
      129.14       131.67        47.24        20.88        28.01        19.20 
TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A0CM TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CX 
       18.02        73.84        24.79        77.19        98.99        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0EV TCGA-A2-A0EY TCGA-A2-A0SV TCGA-A2-A0SX 
       67.33        33.76        31.82        63.29        27.12        50.43 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG 
       17.13         8.38        49.84        20.75        18.21        21.90 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A25B 
       31.73        23.77        17.36        22.45        19.20        42.44 
TCGA-A2-A25D TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XY TCGA-A2-A4S1 TCGA-A7-A0CD 
       18.15        33.93        91.07        35.93        26.96        38.30 
TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13F 
       35.31        30.61        35.67        33.11        31.73        25.15 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV 
       23.74        23.80        14.50        21.17        14.73        12.10 
TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06U 
       10.29        10.42        13.02         1.02        17.98        29.03 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
        1.02        17.03        18.97        12.00        32.05         9.99 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A085 TCGA-A8-A08B TCGA-A8-A08C 
        8.98        24.99         9.99        36.95        38.01        28.96 
TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R 
       33.01        12.00        37.05         9.99        31.00         0.99 
TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A09A TCGA-A8-A09B 
       43.00        33.01        30.97        17.95         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09R 
        1.02        49.05        29.98        33.07        25.02         8.98 
TCGA-AC-A23H TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3OD TCGA-AC-A5EI 
        5.72        26.04        33.04        14.66        14.83        14.53 
TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A8OQ TCGA-AN-A03Y TCGA-AN-A041 
       14.96        13.71        13.58         1.12         0.33         0.23 
TCGA-AN-A049 TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS 
        0.62         1.71         9.96         7.46         0.16         0.33 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ 
        5.65         7.96         7.59         0.36         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03L 
        5.36         0.33        12.33         0.33         0.33        80.28 
TCGA-AO-A03O TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0JM TCGA-AO-A124 
       81.63        52.18        37.48        20.32        71.80       115.27 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AQ-A04H 
      106.78       108.03        64.04        61.87        70.39        24.79 
TCGA-AQ-A04L TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TS TCGA-AR-A0U1 
      130.09         2.56        32.91       140.55        84.10       133.22 
TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AS 
      107.21       108.36       101.00        96.00        86.07        37.81 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24Q TCGA-AR-A24V TCGA-AR-A251 
      160.90        50.89       120.33       104.28       105.30        99.62 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QP TCGA-B6-A0I2 
       71.05        93.83        66.15        57.27        38.96       143.38 
TCGA-B6-A0IA TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH 
      275.87       233.62        18.77       140.88        68.45       212.25 
TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WY 
      102.77       100.70       282.90        97.48        79.63       113.79 
TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A408 
      245.10        43.59       101.52         7.07        85.35        68.12 
TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0BC 
       62.93        20.45        39.55        39.16        81.63        32.02 
TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0C0 TCGA-BH-A0DI TCGA-BH-A0DK 
       74.89        76.60        45.57        41.75        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EB 
       78.28         3.22         2.56         9.63        46.19        24.49 
TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0HI TCGA-BH-A0HU TCGA-BH-A0HY TCGA-BH-A0WA 
       30.35        23.08        20.38        12.89        50.79        23.05 
TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EV 
       37.74        55.63         7.36        51.39        51.16        12.00 
TCGA-BH-A1EW TCGA-BH-A1F0 TCGA-BH-A1FC TCGA-BH-A1FN TCGA-BH-A201 TCGA-BH-A202 
       55.69        25.81       114.15        72.07        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 
       38.60        57.83       130.16        10.52        18.64        23.51 
TCGA-BH-A6R9 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
        5.26        11.93        11.77        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.66        48.53         3.16        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W 
        0.16        12.03        12.33        12.95        20.25        12.53 
TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-D8-A13Z 
       12.95         9.50        14.43        12.95        13.02        20.88 
TCGA-D8-A143 TCGA-D8-A1J9 TCGA-D8-A1JD TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JM 
       14.17        17.49        18.15        20.09        20.09        19.40 
TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XJ TCGA-D8-A1XK 
       21.01        18.58        27.58        18.15        21.80        14.50 
TCGA-D8-A1XL TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       19.92        16.41        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27H TCGA-D8-A27N TCGA-D8-A27R 
       16.54        15.52        14.24        13.05         4.80        10.09 
TCGA-D8-A73X TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       25.22        46.59        37.51        47.15        44.68        40.96 
TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A158 
       38.60        34.26        18.51        63.62        19.43        14.79 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A1IE TCGA-E2-A1IH 
       25.05        23.34        20.71        18.21        77.65        33.73 
TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A1LI 
       33.70        60.99        60.36        24.59        50.07       102.61 
TCGA-E2-A1LL TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N8 TCGA-E9-A1NF 
       43.04        34.92        38.76        17.69        34.16        35.24 
TCGA-E9-A1NH TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 
       18.94        32.09        40.24        21.27        46.59        34.45 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A244 TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UP 
       41.03        41.72         0.69        23.84         0.79        26.40 
TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 
       28.77        22.82        40.41        29.82        23.11         7.86 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A3U0 TCGA-GI-A2C8 
       19.99         6.15        19.96        52.73        17.49         7.40 
TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A3XL 
      109.87        79.10        75.02        70.85        72.10        69.30 
TCGA-HN-A2NL TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A8F5 
        2.60        15.32        14.79        16.08        15.68        19.59 
TCGA-OL-A5RW TCGA-OL-A66P TCGA-OL-A6VO TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LZ 
       36.36        14.07        28.21        64.21        86.96         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-UU-A93S TCGA-WT-AB41 
       18.81        21.07        20.68        19.27         3.81        52.96 

$`AMP PEAK  5(3Q26.32) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
       42.81        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SJ 
        8.52        14.37        43.43        48.10        14.27        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       31.79         7.96        39.32        18.21       143.15        78.41 
TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      121.94        87.25        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12       114.81        92.48        88.60       107.93 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CW TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0D4 
       75.25         5.19       107.93        34.55        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72        89.36        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST 
       72.00        35.05        34.29        61.94        24.72        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T4 TCGA-A2-A0T5 
       54.64        44.88        44.28        17.52        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI 
       18.90        32.55        25.28        50.47        21.67        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1G0 
       18.61        19.33        48.46        23.47        60.72        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25E 
       19.56        16.47        52.47       107.70        17.19       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       10.59        36.23        39.65        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       47.31        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 
       23.21        21.14        21.90        34.29        35.47        37.45 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F 
       29.79        20.19        23.61        29.56        31.36        24.26 
TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       21.73        20.61        22.32        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB 
       11.28        13.41        14.70        11.97        14.93        13.74 
TCGA-A7-A4SF TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P 
       17.92        10.72        11.05         9.37         8.75        13.02 
TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       53.06        31.00        26.01        53.98         9.01        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07Z 
       19.99        18.97        14.01        10.98         7.99        45.07 
TCGA-A8-A084 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08G TCGA-A8-A08O TCGA-A8-A08S 
       15.06        13.02         0.99        19.96        31.00        33.01 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09D 
      112.08        40.01        41.98        12.00         9.99        50.04 
TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       45.07         1.02        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 
       17.03        38.04         0.95        22.95        73.91         1.48 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       87.12        74.14        19.33        32.45         6.48        16.31 
TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       22.19        24.13        25.05        14.99        16.57        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5XS 
       15.48        23.24        24.79        29.26        16.80        19.33 
TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       11.44        17.42        18.67        12.26         1.68         8.22 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A046 
        0.03        20.19         1.32         2.30         0.33         0.33 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AK TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD 
        2.96         1.78         7.36         0.33         0.33         6.44 
TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FY 
        7.00         7.17         6.90         7.04         0.33         0.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M 
        0.30         0.33         0.33         5.33         5.59        61.35 
TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       66.77        95.70        68.75        47.87        58.95        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       32.78        21.40        26.04        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       50.70        50.86        72.00        76.77        65.10        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A12A 
       50.24        62.04        55.33        99.25       108.72        90.58 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        57.30        48.36        41.62        40.57        14.73 
TCGA-AO-A1KP TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       82.62         0.53        17.79        26.93         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV 
       32.52        19.20        98.33         5.26       109.02        75.22 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 
       98.93        64.83        55.86       107.24        65.36        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AP 
      134.14       125.16       103.86        97.68        98.33        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       99.32        17.23        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24L TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R 
       33.73        94.22        99.78       118.59         2.76       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
       97.84       105.27        77.69        32.58        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       89.00        93.30        85.64       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM 
       54.21        63.62        38.17        39.39        40.54        73.35 
TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IB 
       33.30        10.59        77.62       281.29        12.13       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IM TCGA-B6-A0IN 
       50.70        65.72       146.50       112.37       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      165.76       129.07       255.68       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WT 
      263.28       162.05       140.48        89.46       157.41       188.68 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 
       18.35        21.47       206.86       129.70        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A402 
       58.88        73.51       139.17       170.17        37.87        70.16 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0AZ 
       18.84       103.63        71.15        59.84        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA 
       81.44        40.83        70.22        84.13        51.68        37.22 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       18.21        43.53        61.51        21.70        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       75.48        74.14        53.95        49.94        77.95        49.05 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       44.02        89.06        90.97        45.83        77.98        23.44 
TCGA-BH-A0DH TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       38.01        17.26        15.65        38.47        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EA 
       16.27         4.41        15.68        14.30        44.81        32.58 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       31.00        24.43        10.78        15.16        37.78        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HO 
       24.56        41.00        52.96        26.50         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 
       13.61        36.85        51.32        27.25         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       24.95        42.35        44.81        32.91         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18R 
       20.12        90.84        26.66        72.56        30.28        37.55 
TCGA-BH-A18S TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       66.05        67.50        91.99       113.82        82.85        42.28 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        31.53        89.16        97.48        24.62 
TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      120.62        33.17        74.73       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A204 TCGA-BH-A28O 
       55.00        45.63       144.59        72.07        83.31        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A8FY 
        6.44        20.12       109.28        20.88         9.63         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12W 
       18.87        21.76         9.44        11.77        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.66        12.56        13.51         1.87        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HL TCGA-C8-A1HO TCGA-C8-A26X 
        4.11         4.08        12.33        10.42        12.33        12.36 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A3M7 
        8.28         9.67         9.53         0.03        24.56        33.99 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 
       12.49        13.41        19.46        56.81        13.25        20.58 
TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JA 
       13.97        13.48        21.14        19.20        14.17        16.50 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       55.50        15.78        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       18.97        20.12        20.38        12.20        13.32        14.70 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XC TCGA-D8-A1XD 
       17.79        16.73        25.74        23.90        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS 
       15.22        14.73        17.69        55.30        15.85        16.31 
TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
       15.32         9.93        14.14        17.42        16.04        13.45 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T 
       14.43        48.03        16.41        13.48         1.61        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       12.53        12.26        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10C 
       12.66        43.00        34.42        27.52        40.41        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       28.44        28.87        38.24        33.17        75.98        43.33 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 
       32.02        31.96        69.34        69.96        23.24        21.04 
TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I 
       23.87        22.82        17.29        21.63        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P 
       53.92         9.04        20.58        11.05        50.79        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF 
       33.01        32.35        28.50        16.47        37.25        37.41 
TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU 
       70.36        28.44        59.18         3.88        22.19        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH 
       54.18        73.64        19.66        75.81        28.90       106.75 
TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
        8.75        26.99        34.55        43.56         8.28        30.61 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 
       34.29        34.82        32.88        36.82        22.29        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI 
       36.56        39.55        41.62        35.77        25.84         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       11.15        48.23        45.01         1.12        46.65         6.58 
TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       47.64        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.73        40.50        20.12        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A6HE 
       30.18        30.44        23.90        26.70        25.81        27.85 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 
       16.57        15.68        25.94        29.95        29.85        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PD 
       39.78        52.96        18.48        30.08        18.90        13.94 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A2FW 
       10.52        14.43        34.55        55.00        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SB 
       34.03        10.16        23.51        15.22        16.77        24.99 
TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DI 
       31.30        33.21        59.57       216.76        83.34        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        66.38        72.03        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       62.47        11.84        11.57        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Z 
       17.06        14.70        14.47        22.26         2.63         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U 
       14.50        19.53        12.36        17.49        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
        2.10        36.30        58.52        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       34.92        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       23.47        65.62        41.92        42.77        26.04        17.36 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PL-A8LX TCGA-PL-A8LY 
       19.73        40.11         8.91        47.01         0.16         0.26 
TCGA-S3-A6ZG TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       18.48        13.84        18.87        17.39        17.26        13.94 
TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
       17.03        66.84        11.41        29.03        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                        282.90                         281.29 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                        25.035                         29.080 
[1] "0.2 - 282.9 (25.0)" "0.0 - 281.3 (29.1)"
[1] "hr=" "1"  
D5V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  5(3Q26.32) MUTATED        19       21        2        1       133
  AMP PEAK  5(3Q26.32) WILD-TYPE      70       64        4        5       220
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  5(3Q26.32) MUTATED          76         0         45         13
  AMP PEAK  5(3Q26.32) WILD-TYPE       176         2        109         16
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  5(3Q26.32) MUTATED           18        7         0       4
  AMP PEAK  5(3Q26.32) WILD-TYPE         47       13         1       9
D5V3, multiclass
            clus
vv           AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  STAGE I                              19                             70
  STAGE IA                             21                             64
  STAGE IB                              2                              4
  STAGE II                              1                              5
  STAGE IIA                           133                            220
  STAGE IIB                            76                            176
  STAGE III                             0                              2
  STAGE IIIA                           45                            109
  STAGE IIIB                           13                             16
  STAGE IIIC                           18                             47
  STAGE IV                              7                             13
  STAGE TIS                             0                              1
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK  5(3Q26.32) MUTATED    66 225  31  17
  AMP PEAK  5(3Q26.32) WILD-TYPE 210 399 105  23
D5V4, multiclass
    clus
vv   AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  T1                           66                            210
  T2                          225                            399
  T3                           31                            105
  T4                           17                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK  5(3Q26.32) MUTATED   168 102  42  22
  AMP PEAK  5(3Q26.32) WILD-TYPE 339 256  77  55
D5V5, multiclass
    clus
vv   AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  N0                          168                            339
  N1                          102                            256
  N2                           42                             77
  N3                           22                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V6, binary
                                cls
clus                               0   1
  AMP PEAK  5(3Q26.32) MUTATED   296   8
  AMP PEAK  5(3Q26.32) WILD-TYPE 593  14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(3Q26.32) MUTATED    296    8
  AMP PEAK  5(3Q26.32) WILD-TYPE  593   14
   clus
vv  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  0                          296                            593
  1                            8                             14
[1] 2 2
[1] FALSE
D5V7, binary
                                cls
clus                               0   1
  AMP PEAK  5(3Q26.32) MUTATED   336   4
  AMP PEAK  5(3Q26.32) WILD-TYPE 732   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(3Q26.32) MUTATED    336    4
  AMP PEAK  5(3Q26.32) WILD-TYPE  732    8
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  FEMALE                          336                            732
  MALE                              4                              8
[1] 2 2
[1] FALSE
D5V8, binary
                                cls
clus                               0   1
  AMP PEAK  5(3Q26.32) MUTATED   136 166
  AMP PEAK  5(3Q26.32) WILD-TYPE 293 352
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(3Q26.32) MUTATED    136  166
  AMP PEAK  5(3Q26.32) WILD-TYPE  293  352
     clus
vv    AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  NO                           136                            293
  YES                          166                            352
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK  5(3Q26.32) MUTATED                            1
  AMP PEAK  5(3Q26.32) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  5(3Q26.32) MUTATED                             293
  AMP PEAK  5(3Q26.32) WILD-TYPE                           477
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  5(3Q26.32) MUTATED                               16
  AMP PEAK  5(3Q26.32) WILD-TYPE                            184
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  5(3Q26.32) MUTATED                     5                     7
  AMP PEAK  5(3Q26.32) WILD-TYPE                   1                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  5(3Q26.32) MUTATED                                  6
  AMP PEAK  5(3Q26.32) WILD-TYPE                               23
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  5(3Q26.32) MUTATED                    1             10
  AMP PEAK  5(3Q26.32) WILD-TYPE                 16             37
D5V9, multiclass
                                  clus
vv                                 AMP PEAK  5(3Q26.32) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             293
  INFILTRATING LOBULAR CARCINOMA                             16
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       7
  MIXED HISTOLOGY (PLEASE SPECIFY)                            6
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                             10
                                  clus
vv                                 AMP PEAK  5(3Q26.32) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               477
  INFILTRATING LOBULAR CARCINOMA                              184
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             23
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  5(3Q26.32) MUTATED                                  1    27
  AMP PEAK  5(3Q26.32) WILD-TYPE                                0    33
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  5(3Q26.32) MUTATED                          65   208
  AMP PEAK  5(3Q26.32) WILD-TYPE                       116   537
D5V11, multiclass
                                  clus
vv                                 AMP PEAK  5(3Q26.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      27
  BLACK OR AFRICAN AMERICAN                                  65
  WHITE                                                     208
                                  clus
vv                                 AMP PEAK  5(3Q26.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        33
  BLACK OR AFRICAN AMERICAN                                   116
  WHITE                                                       537
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V12, binary
                                cls
clus                               0   1
  AMP PEAK  5(3Q26.32) MUTATED     7 274
  AMP PEAK  5(3Q26.32) WILD-TYPE  32 601
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(3Q26.32) MUTATED      7  274
  AMP PEAK  5(3Q26.32) WILD-TYPE   32  601
                        clus
vv                       AMP PEAK  5(3Q26.32) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                          274
                        clus
vv                       AMP PEAK  5(3Q26.32) WILD-TYPE
  HISPANIC OR LATINO                                 32
  NOT HISPANIC OR LATINO                            601
[1] 2 2
[1] FALSE

Clustering(6) Variable = AMP PEAK  6(4Q13.3) MUTATION ANALYSIS
D6V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  6(4Q13.3) MUTATED   134  26
  AMP PEAK  6(4Q13.3) WILD-TYPE 783 121
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          160                           904 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                           26                           121 
$`AMP PEAK  6(4Q13.3) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SJ TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04W 
      129.14        13.68        28.01        18.02        73.84       101.98 
TCGA-A2-A0CL TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0T1 
       99.12        75.25         5.19        79.76        35.05        17.13 
TCGA-A2-A0T3 TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1G0 TCGA-A2-A3XT TCGA-A2-A3Y0 
       49.84        23.77        17.36        20.25        91.07        50.83 
TCGA-A2-A4S1 TCGA-A7-A4SB TCGA-A7-A6VV TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06U 
       26.96        13.74        10.29        13.02         1.02        29.03 
TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07E TCGA-A8-A07G 
       31.00         1.02        17.03         9.01        19.99        18.97 
TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A08G TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T 
        8.98         9.99        19.96         0.99        33.01       112.08 
TCGA-A8-A091 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09M TCGA-A8-A0A9 TCGA-AC-A2QJ 
       33.01        12.00         9.99        33.07        27.02        14.66 
TCGA-AC-A3W5 TCGA-AC-A62V TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0FY TCGA-AN-A0XU 
       16.57        11.44         1.78         1.71         0.33         0.33 
TCGA-AO-A03O TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0JD 
       81.63        29.13        32.78        21.40        52.18        72.00 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A12D TCGA-AQ-A04L TCGA-AQ-A54O TCGA-AR-A0TS 
       55.33        71.80        64.04       130.09        32.91        84.10 
TCGA-AR-A0TW TCGA-AR-A0U4 TCGA-AR-A1AN TCGA-AR-A1AR TCGA-AR-A24H TCGA-AR-A250 
       98.93       107.21        96.00        17.23       160.90        89.00 
TCGA-AR-A2LL TCGA-AR-A2LR TCGA-B6-A0RG TCGA-B6-A0RS TCGA-B6-A409 TCGA-BH-A0AU 
       66.15        57.27        68.45       100.70        18.84        62.93 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BG TCGA-BH-A0BW 
       20.45        25.55        81.63        84.13        61.51        77.95 
TCGA-BH-A0C0 TCGA-BH-A0H7 TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A18J TCGA-BH-A18L 
       41.75        23.08        27.25        50.79        20.12        26.66 
TCGA-BH-A18N TCGA-BH-A18U TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1FC 
       37.74        51.39        55.69        49.58        25.81       114.15 
TCGA-BH-A1FM TCGA-BH-A1FU TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A5J0 TCGA-C8-A12O 
       45.63        72.07        38.60        57.83        23.51        12.66 
TCGA-C8-A12W TCGA-C8-A1HK TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26W TCGA-C8-A26Y 
       12.66        12.03        12.95        12.33        12.53        12.95 
TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JP TCGA-D8-A1JT 
       16.50        18.15        53.00        14.01        21.01        13.32 
TCGA-D8-A1XA TCGA-D8-A1XF TCGA-D8-A1XK TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A27M 
       27.58        15.22        14.50        15.32        15.52        13.48 
TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A109 TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14R 
       10.09        12.26        46.59        47.15        40.96        38.60 
TCGA-E2-A14S TCGA-E2-A152 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15O TCGA-E2-A1IO 
       33.17        69.96        23.34        20.71        50.79        60.99 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A56Z TCGA-E9-A1R6 TCGA-E9-A1RB TCGA-E9-A1RC 
       19.66        24.59         8.28        11.15        32.09        40.24 
TCGA-E9-A1RE TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       46.65        41.03        40.73        20.12         0.69        38.99 
TCGA-E9-A2JS TCGA-E9-A5UP TCGA-EW-A1OY TCGA-EW-A1P4 TCGA-EW-A1PB TCGA-EW-A1PD 
       29.72        26.40        29.85        29.82        19.99        13.94 
TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 
       19.96        52.73        25.91        33.21         7.40       109.87 
TCGA-GM-A2DB TCGA-GM-A2DF TCGA-LL-A5YP TCGA-LL-A7T0 TCGA-OL-A66I TCGA-OL-A6VO 
       79.10        70.85        14.79        12.36        23.47        28.21 
TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-UL-AAZ6 TCGA-Z7-A8R5 
       18.48        19.27        17.03       108.07 

$`AMP PEAK  6(4Q13.3) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP 
       47.24        20.88        31.79         7.96        39.32        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V 
       18.21       143.15        78.41       121.94        87.25        63.12 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43        36.13       136.73        24.79       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       88.60       107.93        77.19        98.99       107.93        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU 
       89.36        80.28       118.45        74.40        72.00        34.29 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU 
       31.82        61.94        24.72        63.29        99.19        54.64 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 
       27.12        44.88        50.43        44.28        17.52         8.38 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ 
       19.33        48.46        31.73        23.47        60.72        22.45 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       19.20        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       33.93        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 
       50.37         7.30        24.39        21.30        23.21        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.90        38.30        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       25.15        23.61        29.56        31.36        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.29        11.28        13.41        14.70        11.97        14.93 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06R 
       11.05         9.37        10.42         8.75        13.02        17.98 
TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07I 
       53.06        26.01        53.98        43.00        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         7.99        24.99 
TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        15.06        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        33.01        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 
       31.00        43.00        40.01        30.97        17.95        41.98 
TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I 
        9.99        12.00         1.02        50.04        49.05        45.07 
TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       29.98         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
        0.99        17.03        38.04         0.95        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72         1.48        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       19.33        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI 
       24.13        25.05        14.99        19.79        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU 
       24.79        29.26        16.80        14.53        19.33        14.96 
TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO 
       13.71        17.42        18.67        13.58        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS 
        8.22         0.03        20.19         1.12         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
        0.33         0.33         0.23         0.33         0.62         2.96 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.33         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J5 
       66.77        95.70        68.75        47.87        58.95        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       50.86        76.77        65.10        26.24        50.24        62.04 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27        99.25       108.72       106.78       108.03        90.58 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        57.30        48.36        41.62        40.57        14.73 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H 
       82.62        61.87        70.39         0.53        17.79        24.79 
TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 
       26.93         5.65        15.62        32.52         2.56        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TX 
      140.55        98.33         5.26       109.02        75.22        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       55.86       107.24        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      125.16       108.36       101.00       103.86        97.68        98.33 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV 
       86.07        93.90        99.32        37.81        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.53        86.43        33.73        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27        77.69       105.30        32.58        98.76        98.66 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       99.62        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       40.54        73.35        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      143.38       281.29        12.13       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.72       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH 
       84.59       165.76       129.07       140.88       255.68       212.25 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
      234.28        81.17        78.02       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.48        89.46       282.90       157.41        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
       79.63        18.35        21.47       113.79       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      245.10        28.27        68.94        58.88        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       73.51       139.17       170.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AZ 
       70.16        68.12       103.63        71.15        59.84        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B9 
       81.44        40.83        39.55        39.16        70.22        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BL 
       37.22        32.02        18.21        43.53        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        53.95 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       45.57        49.94        49.05        44.02        89.06        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       45.83        77.98        23.44        38.01        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       78.28        17.26        15.65         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE 
        9.63        44.81        46.19        32.58        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.43        30.35        10.78        15.16        37.78        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       24.56        41.00        52.96        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0RX 
        2.50        13.61        36.85        12.89        51.32         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18Q 
        4.90        35.93        90.84        72.56        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       37.55        66.05         7.36        51.16        67.50        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EY TCGA-BH-A1F2 
      113.82        82.85        42.28        12.00        17.69        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE 
       89.16        97.48        24.62       120.62        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR 
      122.89        36.92        63.35        55.00        72.07       144.59 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       28.14        26.14        83.31       130.16        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 
       20.12        10.52       109.28        20.88        18.64         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L 
        5.26         9.70        18.87        21.76         9.44        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        11.77        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        48.53        12.56         3.16        13.51         1.87 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
       12.59        12.92         4.11         4.08        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26V 
       11.34        11.28         0.16        10.42        12.33        20.25 
TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.36         8.28         9.67         9.53         0.03         9.50 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
       24.56        14.43        33.99        12.95        13.02        12.49 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 
       13.41        19.46        56.81        20.88        13.25        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 
       13.97        14.17        13.48        21.14        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JI 
       17.49        55.50        15.78        18.90        12.03        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS 
       20.09        20.12        20.09        19.40        20.38        12.20 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL 
       18.15        12.39        17.16        14.73        21.80        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        55.30        16.41        15.85        16.31        16.64 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       12.99        15.16        43.04        16.54         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V 
       48.03        16.41         4.80         1.61        13.08        12.53 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18        12.66        25.22 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       43.00        34.42        27.52        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14T TCGA-E2-A14U 
       28.44        28.87        44.68        38.24        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       34.26        32.02        31.96        69.34        18.51        63.62 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 
       23.24        19.43        21.04        23.87        14.79        25.05 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       22.82        17.29        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       32.35        28.50        16.47        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LB 
       22.19        11.08        54.18        60.36        73.64        75.81 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       28.90        50.07       106.75       102.61         8.75        43.04 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       26.99        34.55        43.56        30.61        34.92        38.76 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 
       34.29        17.69        34.82        32.88        36.82        22.29 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       34.16        36.20        36.56        39.55        41.62        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.24        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RA 
       34.95         2.56         6.12         3.02        48.23        45.01 
TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
        1.12         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E 
       32.05        42.25        37.74        39.09        38.37        41.72 
TCGA-E9-A22H TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT 
       40.50         1.94         7.13        24.56        12.33         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        27.85        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
        8.48        18.21        18.90        13.25        16.57        15.68 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        22.82        29.95        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        52.96        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR 
       18.90         6.15        10.52        14.43        34.55        55.00 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 
       22.09        34.03        17.49        10.16        23.51        15.22 
TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC 
       16.77        24.99        31.30        59.57       216.76        83.34 
TCGA-GM-A2DD TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       75.02        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      101.62        85.35       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 
       11.84        11.57        21.24        13.22         7.10        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       10.62        24.95        32.75        29.23        25.05        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR 
       15.32        14.70        14.47        22.26         2.63        16.08 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-LL-A9Q3 
       15.68         7.46        14.50        19.53        19.59        17.49 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       58.62        40.08        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       22.32        20.38        26.70        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       26.04        17.36        14.07        19.73        40.11         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       47.01        64.21        86.96         0.16         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       18.81        21.07        20.68        13.84        18.87        17.39 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 
       17.26        13.94         3.81        66.84        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       29.03        15.35        16.04       107.05 

  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                         0.33                          0.03 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                        160.9                         282.9 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                       27.135                        28.205 
[1] "0.3 - 160.9 (27.1)" "0.0 - 282.9 (28.2)"
[1] "hr=" "1.4"
D6V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  6(4Q13.3) MUTATED        11       11        1        0        58
  AMP PEAK  6(4Q13.3) WILD-TYPE      78       74        5        6       295
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  6(4Q13.3) MUTATED          37         0         20          7
  AMP PEAK  6(4Q13.3) WILD-TYPE       215         2        134         22
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  6(4Q13.3) MUTATED           10        4         0       3
  AMP PEAK  6(4Q13.3) WILD-TYPE         55       16         1      10
D6V3, multiclass
            clus
vv           AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  STAGE I                             11                            78
  STAGE IA                            11                            74
  STAGE IB                             1                             5
  STAGE II                             0                             6
  STAGE IIA                           58                           295
  STAGE IIB                           37                           215
  STAGE III                            0                             2
  STAGE IIIA                          20                           134
  STAGE IIIB                           7                            22
  STAGE IIIC                          10                            55
  STAGE IV                             4                            16
  STAGE TIS                            0                             1
  STAGE X                              3                            10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  AMP PEAK  6(4Q13.3) MUTATED    42  91  18  11
  AMP PEAK  6(4Q13.3) WILD-TYPE 234 533 118  29
D6V4, multiclass
    clus
vv   AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  T1                          42                           234
  T2                          91                           533
  T3                          18                           118
  T4                          11                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  AMP PEAK  6(4Q13.3) MUTATED    72  59  15  12
  AMP PEAK  6(4Q13.3) WILD-TYPE 435 299 104  65
D6V5, multiclass
    clus
vv   AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  N0                          72                           435
  N1                          59                           299
  N2                          15                           104
  N3                          12                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V6, binary
                               cls
clus                              0   1
  AMP PEAK  6(4Q13.3) MUTATED   142   4
  AMP PEAK  6(4Q13.3) WILD-TYPE 747  18
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(4Q13.3) MUTATED    142    4
  AMP PEAK  6(4Q13.3) WILD-TYPE  747   18
   clus
vv  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  0                         142                           747
  1                           4                            18
[1] 2 2
[1] FALSE
D6V7, binary
                               cls
clus                              0   1
  AMP PEAK  6(4Q13.3) MUTATED   160   3
  AMP PEAK  6(4Q13.3) WILD-TYPE 908   9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(4Q13.3) MUTATED    160    3
  AMP PEAK  6(4Q13.3) WILD-TYPE  908    9
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  FEMALE                         160                           908
  MALE                             3                             9
[1] 2 2
[1] FALSE
D6V8, binary
                               cls
clus                              0   1
  AMP PEAK  6(4Q13.3) MUTATED    57  83
  AMP PEAK  6(4Q13.3) WILD-TYPE 372 435
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(4Q13.3) MUTATED     57   83
  AMP PEAK  6(4Q13.3) WILD-TYPE  372  435
     clus
vv    AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  NO                           57                           372
  YES                          83                           435
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  AMP PEAK  6(4Q13.3) MUTATED                            0
  AMP PEAK  6(4Q13.3) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  6(4Q13.3) MUTATED                             142
  AMP PEAK  6(4Q13.3) WILD-TYPE                           628
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  6(4Q13.3) MUTATED                                7
  AMP PEAK  6(4Q13.3) WILD-TYPE                            193
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  6(4Q13.3) MUTATED                     2                     3
  AMP PEAK  6(4Q13.3) WILD-TYPE                   4                     6
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  6(4Q13.3) MUTATED                                  2
  AMP PEAK  6(4Q13.3) WILD-TYPE                               27
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  6(4Q13.3) MUTATED                    1              6
  AMP PEAK  6(4Q13.3) WILD-TYPE                 16             41
D6V9, multiclass
                                  clus
vv                                 AMP PEAK  6(4Q13.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            142
  INFILTRATING LOBULAR CARCINOMA                             7
  MEDULLARY CARCINOMA                                        2
  METAPLASTIC CARCINOMA                                      3
  MIXED HISTOLOGY (PLEASE SPECIFY)                           2
  MUCINOUS CARCINOMA                                         1
  OTHER  SPECIFY                                             6
                                  clus
vv                                 AMP PEAK  6(4Q13.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              628
  INFILTRATING LOBULAR CARCINOMA                             193
  MEDULLARY CARCINOMA                                          4
  METAPLASTIC CARCINOMA                                        6
  MIXED HISTOLOGY (PLEASE SPECIFY)                            27
  MUCINOUS CARCINOMA                                          16
  OTHER  SPECIFY                                              41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  6(4Q13.3) MUTATED                                  1     8
  AMP PEAK  6(4Q13.3) WILD-TYPE                                0    52
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  6(4Q13.3) MUTATED                          30   100
  AMP PEAK  6(4Q13.3) WILD-TYPE                       151   645
D6V11, multiclass
                                  clus
vv                                 AMP PEAK  6(4Q13.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                      8
  BLACK OR AFRICAN AMERICAN                                 30
  WHITE                                                    100
                                  clus
vv                                 AMP PEAK  6(4Q13.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       52
  BLACK OR AFRICAN AMERICAN                                  151
  WHITE                                                      645
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V12, binary
                               cls
clus                              0   1
  AMP PEAK  6(4Q13.3) MUTATED     9 125
  AMP PEAK  6(4Q13.3) WILD-TYPE  30 750
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(4Q13.3) MUTATED      9  125
  AMP PEAK  6(4Q13.3) WILD-TYPE   30  750
                        clus
vv                       AMP PEAK  6(4Q13.3) MUTATED
  HISPANIC OR LATINO                               9
  NOT HISPANIC OR LATINO                         125
                        clus
vv                       AMP PEAK  6(4Q13.3) WILD-TYPE
  HISPANIC OR LATINO                                30
  NOT HISPANIC OR LATINO                           750
[1] 2 2
[1] FALSE

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
D7V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  7(5P15.33) MUTATED   331  59
  AMP PEAK  7(5P15.33) WILD-TYPE 586  88
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           390                            674 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                            59                             88 
$`AMP PEAK  7(5P15.33) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
      129.14        13.68        31.79        39.32        28.01        19.20 
TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04W TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 
       18.02        73.84       101.98        56.81        67.33        33.76 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV 
       89.36        80.28        79.76        35.05        34.29        31.82 
TCGA-A2-A0EX TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T6 
       24.72        27.12        44.88        17.13        49.84        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW 
       20.75        18.21        21.90        31.73        23.77        17.36 
TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A3XU TCGA-A2-A3XX 
       60.72        20.25        19.20        42.44        29.98        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A2-A4S2 
       35.93        50.37         7.30        24.39        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       21.90        38.30        30.61        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A425 
       20.19        25.15        21.73        20.61        22.32        14.70 
TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV 
       13.74        14.50        17.92        14.73        12.10        10.29 
TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06U TCGA-A8-A06X 
        9.37        10.42        13.02         1.02        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07O 
       26.01         1.02        17.03         9.01        18.97         9.99 
TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08F 
       24.99         9.99        45.07        13.02        38.01        33.01 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X 
       19.96        12.00        31.00         0.99        33.01        43.00 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09N 
       17.95        41.98        12.00         9.99        12.00         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A9 
       25.02         8.98        14.01        12.00        13.02        27.02 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FE TCGA-AC-A2QJ 
       22.95        73.91         1.48        73.05        86.66        14.66 
TCGA-AC-A3HN TCGA-AC-A5EI TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A7VC TCGA-AC-A8OP 
       16.31        14.53        14.96        11.44         0.03        20.19 
TCGA-AC-A8OQ TCGA-AN-A03Y TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AM 
        1.12         0.33         1.78         9.96         7.36         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FX TCGA-AN-A0FY 
        0.33         0.33         7.96         7.00         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03M 
        5.36         0.33        12.33         0.33        80.28        61.35 
TCGA-AO-A03O TCGA-AO-A0J3 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JC 
       81.63        21.40        37.48        20.32        53.03        50.86 
TCGA-AO-A0JE TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B 
       76.77        55.33        71.80       106.78        90.58        98.27 
TCGA-AO-A12E TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       57.30        70.39         0.53        24.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U1 
       32.91       140.55         5.26        75.22        98.93       133.22 
TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AM TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24H 
      108.36       103.86        98.33        61.28        33.73       160.90 
TCGA-AR-A24R TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A254 TCGA-AR-A255 
      112.77        77.69       105.30        32.58        85.64        71.05 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QP TCGA-B6-A0I1 
       54.21        66.15        57.27        73.35        38.96        77.62 
TCGA-B6-A0I2 TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0WT 
      143.38       233.62       165.76       140.88       255.68       188.68 
TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A3ZX 
       79.63       113.79       245.10       101.52        73.51        37.87 
TCGA-B6-A400 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AV 
        7.07        68.12        18.84       103.63        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BF 
       20.45        39.55        70.22        84.13        37.22        43.53 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0C1 TCGA-BH-A0C7 
       21.70        74.89        75.48        76.60        44.02        90.97 
TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0EB TCGA-BH-A0EE 
       29.98        78.28        15.65         2.56        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0H7 TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HX TCGA-BH-A0HY 
       24.43        23.08        13.61        36.85        27.25        50.79 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
       42.35        44.81        23.05        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       37.74         7.36        51.39        51.16        67.50        91.99 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        12.00        55.69        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1FM TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A2L8 
       97.48        45.63        26.14        38.60        57.83        20.12 
TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-C8-A12L TCGA-C8-A12O 
       18.64         9.63         5.26         9.70        11.93        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A1HE 
       11.77        12.66         3.16        13.51        12.92        12.33 
TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A27B TCGA-C8-A3M8 TCGA-D8-A13Y 
       11.28        12.03        12.33        14.43        12.95        56.81 
TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JE TCGA-D8-A1JF 
       13.97        21.14        14.17        17.49        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JT 
       53.00        14.01        20.09        20.12        20.09        13.32 
TCGA-D8-A1X6 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XK TCGA-D8-A1XL 
       17.79        23.90        27.58        18.15        14.50        19.92 
TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       16.31        12.99        43.04        16.54        15.32        15.52 
TCGA-D8-A1Y2 TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A73X 
       14.24        13.05        14.43        12.53        12.26        25.22 
TCGA-E2-A107 TCGA-E2-A10B TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14T 
       34.42        37.51        44.68        40.96        33.17        75.98 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A15A 
       69.34        18.51        69.96        23.24        21.04        23.34 
TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15S TCGA-E2-A1AZ 
       20.71        18.21        20.58        11.05        14.07        76.57 
TCGA-E2-A1B0 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1BD TCGA-E2-A1IH TCGA-E2-A1II 
       53.62        33.01        32.35        37.25        33.73        33.70 
TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LG 
       22.19        11.08        54.18        60.36        19.66        50.07 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A574 
      106.75       102.61         8.75        43.04        26.99        38.76 
TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE 
       17.69        22.29        34.16        36.20        36.56        35.77 
TCGA-E9-A1NI TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
        9.86         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RH TCGA-E9-A22D TCGA-E9-A22G 
       32.09        40.24         1.12        46.59        41.03        40.73 
TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A54X 
       20.12        38.99         7.13        12.33        38.07        23.90 
TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1IY TCGA-EW-A1J3 TCGA-EW-A1J6 
       23.84         0.79        26.40         8.48        16.57        28.77 
TCGA-EW-A1P0 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PD 
       41.13        29.82        23.11         7.86         6.15        13.94 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A6SD TCGA-GI-A2C9 TCGA-GM-A2DC TCGA-GM-A2DH 
       17.49        10.16        33.21       109.87        83.34        72.10 
TCGA-GM-A3NW TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A5PV TCGA-HN-A2OB TCGA-LD-A66U 
      110.50        69.30        66.38        13.55        62.47        21.24 
TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A7SZ TCGA-LL-A8F5 
       32.75        15.32        14.79         2.63        19.53        19.59 
TCGA-LL-A9Q3 TCGA-MS-A51U TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66N TCGA-OL-A97C 
       17.49        22.39        36.36        20.38        26.04         8.91 
TCGA-PE-A5DC TCGA-PE-A5DE TCGA-PL-A8LX TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-UL-AAZ6 
       47.01        86.96         0.16        18.48        21.07        17.03 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
        3.81        11.41        52.96        15.35       108.07       107.05 

$`AMP PEAK  7(5P15.33) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       47.24        20.88         7.96        18.21       143.15        78.41 
TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
      121.94        87.25        63.12        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
       99.12        24.79       114.81        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D1 
       77.19        75.25         5.19        98.99       107.93        34.55 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES 
       61.58        25.22       101.72       118.45        74.40        72.00 
TCGA-A2-A0EW TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0SY 
       61.94        63.29        99.19        54.64        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0YC TCGA-A2-A0YD 
       17.52         8.38        20.52        17.46        32.55        25.28 
TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       50.47        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       23.47        22.45        19.56        16.47        52.47       107.70 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3Y0 TCGA-A2-A4RY 
       33.93        91.07        32.75        56.28        50.83        21.30 
TCGA-A2-A4S0 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA 
       23.21        35.31        34.29        35.47        37.45        35.67 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H 
       23.61        29.56        31.36        24.26        23.74        23.80 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 
       11.34        10.59        10.29        11.28        13.41        11.97 
TCGA-A7-A4SA TCGA-A7-A4SE TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VY TCGA-A8-A06P 
       14.93        21.17        10.72        11.05         8.75        13.02 
TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
       17.98        53.06        53.98        43.00        19.99        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S 
       14.01        12.00        32.05        10.98         8.98         7.99 
TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08J TCGA-A8-A08L 
       15.06        36.95         0.99        28.96        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A099 
       31.00       112.08        40.01        33.01        30.97         9.99 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
        1.02        50.04        49.05        45.07        29.98        33.07 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A7 
       19.04        15.02         0.99        19.04        21.04         0.99 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2BM TCGA-AC-A2FB 
       17.03        38.04         0.95         5.72        99.35        40.57 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ 
       19.33        32.45         6.48        14.83        22.19        24.13 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI 
       25.05        14.99        16.57        19.79        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y 
       24.79        29.26        16.80        19.33        13.71        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OR 
       18.67        13.58        12.26         1.68         8.22         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
        2.30         0.33         0.23         0.33         0.62         2.96 
TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FL 
        1.71         7.46         0.33         6.44         5.65         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FZ 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW 
        0.30         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       66.77        95.70        68.75        47.87        58.95        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JB 
       32.78        52.18        26.04        22.36        21.53        50.70 
TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A124 
       72.00        65.10        26.24        50.24        62.04       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G 
       99.25       108.72       108.03        64.04        48.36        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KT TCGA-AQ-A04J 
       40.57        14.73        82.62        61.87        17.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TS 
      130.09        15.62        32.52        19.20        98.33        84.10 
TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 
      109.02        64.83        55.86       107.24        65.36        83.87 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AN 
      134.14       107.21       125.16       101.00        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU 
       86.07        93.90        99.32        17.23        37.81        94.29 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       86.53        86.43        50.89        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24X 
      118.59         2.76       104.28        97.84       105.27        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A256 TCGA-AR-A2LE 
       98.66        89.00        99.62        93.30        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       20.25        86.53        63.62        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
       33.30        10.59       281.29        12.13       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM 
       50.70        65.72       146.50       112.37        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
       84.59       129.07        68.45       212.25       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS 
       78.02       263.28       162.05       102.77       140.48       100.70 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WW TCGA-B6-A0WX 
       89.46       282.90       157.41        97.48        18.35        21.47 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      206.86       129.70        28.27        68.94        58.88        43.59 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A40C TCGA-BH-A0AY 
      139.17       170.17        85.35        70.16        71.15        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B9 
       63.09        81.44        40.83        39.16        81.63        51.68 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ 
       32.02        18.21        61.51        61.68        72.23        74.14 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       53.95        45.57        49.94        77.95        49.05        41.75 
TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK 
       89.06        45.83        77.98        23.44        38.01        13.91 
TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
       17.26         3.22        38.47        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        46.19 
TCGA-BH-A0EA TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       32.58        30.35        10.78        15.16        37.78        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       24.56        41.00        52.96        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
        2.50        12.89        51.32         5.59        23.93        24.95 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18P TCGA-BH-A18Q 
       32.91         4.90        35.93        20.12        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EX TCGA-BH-A1F5 
       37.55        66.05       113.82        82.85        49.58        89.16 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       24.62       120.62       114.15        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       36.92        63.35        55.00        72.07       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A42T 
       28.14        83.31       130.16        10.65         6.44        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
      109.28        20.88        23.51        18.87        21.76         9.44 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A138 
       48.53        12.56         1.87        12.59         4.11         4.08 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A1HO 
       10.92        11.34         0.16        10.42        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       20.25        12.53        12.36        12.95         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A8HP 
        9.53         0.03         9.50        24.56        33.99        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 
       12.49        13.41        19.46        20.88        13.25        20.58 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       14.17        13.48        19.20        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JI TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       18.15        18.97        19.40        20.38        21.01        12.20 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XC TCGA-D8-A1XD 
       14.70        18.58        16.73        25.74        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       15.22        14.73        21.80        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.85        16.64        15.16         9.93        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       16.04        13.45        48.03        16.41        13.48         4.80 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
        1.61        10.09        13.08        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       16.18        12.66        43.00        27.52        46.59        40.41 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14R 
       40.11        28.44        28.87        47.15        38.24        38.60 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A150 TCGA-E2-A154 
       43.33        34.26        32.02        31.96        63.62        19.43 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F 
       23.87        14.79        25.05        22.82        17.29        21.63 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15O TCGA-E2-A15P 
       12.92        55.63        53.92         9.04        50.79        19.56 
TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE 
       56.94        51.39        87.22        28.50        16.47        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO 
       37.41        70.36        28.44        59.18         3.88        60.99 
TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A2P6 TCGA-E2-A3DX 
       73.64        24.59        75.81        28.90        34.55        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        34.92        34.29        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       36.82        39.55        41.62        35.24        25.84        18.94 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1RA TCGA-E9-A1RE TCGA-E9-A1RF 
       24.82        28.27        34.95        45.01        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       21.27        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A244 TCGA-E9-A248 
       39.09        38.37        41.72        40.50         0.69         1.94 
TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       24.56        29.72         9.47        32.91        30.18        30.44 
TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ 
       26.70        25.81        27.85        12.20        39.72        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       18.90        13.25        15.68        25.94        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 
       29.85        40.41        39.78        52.96        18.48        30.08 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH 
       18.90        19.99        10.52        14.43        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 
       55.00        52.73        25.91        22.09        34.03        23.51 
TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GM-A2D9 
       15.22        16.77        24.99        31.30         7.40        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DK 
      216.76        79.10        75.02        70.85        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62        85.35        38.20        43.73 
TCGA-GM-A4E0 TCGA-GM-A5PX TCGA-HN-A2NL TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A74U 
       72.03        18.12         2.60        11.84        11.57        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y 
        7.10        13.28        10.62        24.95        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y 
       17.06        14.70        14.47        22.26        16.08        15.68 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D6 
        7.46        14.50        12.36        27.91         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       58.52        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       24.72        22.32        26.70        23.47        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        17.36        14.07        28.21        19.73        40.11 
TCGA-PE-A5DD TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA10 
       64.21         0.26         9.93        18.81        20.68        19.27 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-V7-A7HQ 
       13.84        18.87        17.39        17.26        13.94        66.84 
TCGA-WT-AB44 TCGA-XX-A89A 
       29.03        16.04 

  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                          0.03                           0.03 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                        255.68                         282.90 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                        25.005                         29.245 
[1] "0.0 - 255.7 (25.0)" "0.0 - 282.9 (29.2)"
[1] "hr=" "1.4"
D7V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  7(5P15.33) MUTATED        31       23        2        1       138
  AMP PEAK  7(5P15.33) WILD-TYPE      58       62        4        5       215
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  7(5P15.33) MUTATED          91         1         60         10
  AMP PEAK  7(5P15.33) WILD-TYPE       161         1         94         19
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  7(5P15.33) MUTATED           25        8         0       3
  AMP PEAK  7(5P15.33) WILD-TYPE         40       12         1      10
D7V3, multiclass
            clus
vv           AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  STAGE I                              31                             58
  STAGE IA                             23                             62
  STAGE IB                              2                              4
  STAGE II                              1                              5
  STAGE IIA                           138                            215
  STAGE IIB                            91                            161
  STAGE III                             1                              1
  STAGE IIIA                           60                             94
  STAGE IIIB                           10                             19
  STAGE IIIC                           25                             40
  STAGE IV                              8                             12
  STAGE TIS                             0                              1
  STAGE X                               3                             10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK  7(5P15.33) MUTATED    85 238  53  16
  AMP PEAK  7(5P15.33) WILD-TYPE 191 386  83  24
D7V4, multiclass
    clus
vv   AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  T1                           85                            191
  T2                          238                            386
  T3                           53                             83
  T4                           16                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK  7(5P15.33) MUTATED   197 111  54  27
  AMP PEAK  7(5P15.33) WILD-TYPE 310 247  65  50
D7V5, multiclass
    clus
vv   AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  N0                          197                            310
  N1                          111                            247
  N2                           54                             65
  N3                           27                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V6, binary
                                cls
clus                               0   1
  AMP PEAK  7(5P15.33) MUTATED   336   9
  AMP PEAK  7(5P15.33) WILD-TYPE 553  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(5P15.33) MUTATED    336    9
  AMP PEAK  7(5P15.33) WILD-TYPE  553   13
   clus
vv  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  0                          336                            553
  1                            9                             13
[1] 2 2
[1] FALSE
D7V7, binary
                                cls
clus                               0   1
  AMP PEAK  7(5P15.33) MUTATED   389   5
  AMP PEAK  7(5P15.33) WILD-TYPE 679   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(5P15.33) MUTATED    389    5
  AMP PEAK  7(5P15.33) WILD-TYPE  679    7
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  FEMALE                          389                            679
  MALE                              5                              7
[1] 2 2
[1] FALSE
D7V8, binary
                                cls
clus                               0   1
  AMP PEAK  7(5P15.33) MUTATED   144 205
  AMP PEAK  7(5P15.33) WILD-TYPE 285 313
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(5P15.33) MUTATED    144  205
  AMP PEAK  7(5P15.33) WILD-TYPE  285  313
     clus
vv    AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  NO                           144                            285
  YES                          205                            313
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK  7(5P15.33) MUTATED                            1
  AMP PEAK  7(5P15.33) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  7(5P15.33) MUTATED                             297
  AMP PEAK  7(5P15.33) WILD-TYPE                           473
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  7(5P15.33) MUTATED                               61
  AMP PEAK  7(5P15.33) WILD-TYPE                            139
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  7(5P15.33) MUTATED                     2                     7
  AMP PEAK  7(5P15.33) WILD-TYPE                   4                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  7(5P15.33) MUTATED                                  9
  AMP PEAK  7(5P15.33) WILD-TYPE                               20
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  7(5P15.33) MUTATED                    2             14
  AMP PEAK  7(5P15.33) WILD-TYPE                 15             33
D7V9, multiclass
                                  clus
vv                                 AMP PEAK  7(5P15.33) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             297
  INFILTRATING LOBULAR CARCINOMA                             61
  MEDULLARY CARCINOMA                                         2
  METAPLASTIC CARCINOMA                                       7
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                             14
                                  clus
vv                                 AMP PEAK  7(5P15.33) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               473
  INFILTRATING LOBULAR CARCINOMA                              139
  MEDULLARY CARCINOMA                                           4
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             20
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  7(5P15.33) MUTATED                                  1    16
  AMP PEAK  7(5P15.33) WILD-TYPE                                0    44
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  7(5P15.33) MUTATED                          66   270
  AMP PEAK  7(5P15.33) WILD-TYPE                       115   475
D7V11, multiclass
                                  clus
vv                                 AMP PEAK  7(5P15.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      16
  BLACK OR AFRICAN AMERICAN                                  66
  WHITE                                                     270
                                  clus
vv                                 AMP PEAK  7(5P15.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        44
  BLACK OR AFRICAN AMERICAN                                   115
  WHITE                                                       475
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V12, binary
                                cls
clus                               0   1
  AMP PEAK  7(5P15.33) MUTATED    12 321
  AMP PEAK  7(5P15.33) WILD-TYPE  27 554
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(5P15.33) MUTATED     12  321
  AMP PEAK  7(5P15.33) WILD-TYPE   27  554
                        clus
vv                       AMP PEAK  7(5P15.33) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          321
                        clus
vv                       AMP PEAK  7(5P15.33) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            554
[1] 2 2
[1] FALSE

Clustering(8) Variable = AMP PEAK  8(6P23) MUTATION ANALYSIS
D8V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  8(6P23) MUTATED   257  40
  AMP PEAK  8(6P23) WILD-TYPE 660 107
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        297                         767 
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                         40                         107 
$`AMP PEAK  8(6P23) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A2-A04P 
      129.14        42.81         9.96        31.79        28.01        18.02 
TCGA-A2-A04T TCGA-A2-A04X TCGA-A2-A0CM TCGA-A2-A0CT TCGA-A2-A0CX TCGA-A2-A0D0 
       73.84        55.43        24.79        75.25        56.81        67.33 
TCGA-A2-A0D2 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EY TCGA-A2-A0T0 
       33.76        79.76        35.05        31.82        63.29        17.52 
TCGA-A2-A0T2 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YM 
        8.38        20.75        18.21        21.90        18.61        31.73 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       23.77        17.36        60.72        42.44        17.19        18.15 
TCGA-A2-A3XS TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 
       33.93        32.75        56.28        47.31        35.93        50.83 
TCGA-A2-A4RW TCGA-A2-A4S1 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0DA 
        7.30        26.96        38.30        35.31        30.61        35.67 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A425 
       29.79        31.73        25.15        21.73        20.61        14.70 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A6VV TCGA-A8-A06O 
       14.50        21.17        17.92        14.73        10.29        13.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07F TCGA-A8-A07I 
       17.98        31.00        17.03        53.98        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A08B TCGA-A8-A08C 
       12.00         8.98        24.99         9.99        38.01        28.96 
TCGA-A8-A08F TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 
       33.01        31.00         0.99        33.01        43.00        30.97 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00         1.02        49.05         1.02        25.02 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2QH TCGA-AC-A3W5 
       38.04         0.95        22.95        73.05        33.04        16.57 
TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ 
       19.33        14.96        13.71        13.58         0.03         1.12 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.23         2.96         1.78         1.71         9.96 
TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FW TCGA-AN-A0FX 
        0.33         7.96         7.00         7.59         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0XN TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A0J4 
        0.33         0.33        80.28        61.35        66.77        52.18 
TCGA-AO-A0JD TCGA-AO-A0JG TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A129 
       72.00        26.24        55.33        71.80       115.27       108.03 
TCGA-AO-A12B TCGA-AO-A1KS TCGA-AQ-A0Y5 TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR 
       98.27         0.53         5.65        19.20       140.55         5.26 
TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U0 TCGA-AR-A1AH TCGA-AR-A1AU 
       84.10        75.22        98.93        65.36       125.16        94.29 
TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24Q TCGA-AR-A250 TCGA-AR-A255 
       61.28        33.73       160.90       104.28        89.00        71.05 
TCGA-AR-A2LL TCGA-AR-A2LR TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IJ 
       66.15        57.27       143.38        12.13       275.87       233.62 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0RG TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0RU 
       84.59       165.76        68.45       162.05       100.70       282.90 
TCGA-B6-A0WT TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A400 
      188.68       113.79       245.10        43.59       101.52         7.07 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW 
       70.16        68.12        18.84        71.15        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BF TCGA-BH-A0BG 
       25.55        39.55        81.63        37.22        43.53        61.51 
TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0DH 
       74.89        75.48        45.57        49.05        44.02        38.01 
TCGA-BH-A0DQ TCGA-BH-A0EB TCGA-BH-A0H7 TCGA-BH-A0HQ TCGA-BH-A0RX TCGA-BH-A0W7 
        3.22        24.49        23.08        36.85         5.59        44.81 
TCGA-BH-A0WA TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN 
       23.05        90.84        26.66         7.36        51.39        67.50 
TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1F2 TCGA-BH-A1FC TCGA-BH-A1FE TCGA-BH-A1FN 
       91.99        12.00        31.53       114.15        74.73        72.07 
TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A42V TCGA-BH-A6R8 TCGA-C8-A12P 
       38.60        57.83       130.16        20.88         9.63        11.77 
TCGA-C8-A12Q TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A138 
       12.66        12.66        12.66         3.16         1.87         4.08 
TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HO TCGA-D8-A13Z 
       11.34         0.16        12.03        12.33        12.33        20.88 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A1J8 TCGA-D8-A1JB TCGA-D8-A1JF TCGA-D8-A1JL 
       13.97        14.17        14.17        55.50        12.03        20.09 
TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XQ 
       18.58        23.90        21.80        14.50        19.92        16.41 
TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27R 
       16.64        16.54        15.32        14.14        16.04        10.09 
TCGA-D8-A27V TCGA-E2-A10C TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A159 TCGA-E2-A15A 
       12.53        40.11        31.96        18.51        25.05        23.34 
TCGA-E2-A15D TCGA-E2-A15M TCGA-E2-A15S TCGA-E2-A1B0 TCGA-E2-A1IG TCGA-E2-A1II 
       17.29        11.05        14.07        53.62        70.36        33.70 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P5 
        3.88        22.19        50.07       102.61        43.04        26.99 
TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N8 TCGA-E9-A1N9 
        8.28        34.92        38.76        17.69        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1R7 TCGA-E9-A1RE TCGA-E9-A1RF 
       36.56        41.62        35.77        48.23        46.65         6.58 
TCGA-E9-A22D TCGA-E9-A244 TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A54Y TCGA-E9-A5UO 
       41.03         0.69        12.33        38.07        23.84        25.81 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P6 
       28.77        25.94        22.82        40.41        29.82        18.48 
TCGA-EW-A1P8 TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A423 
        7.86        14.43        19.96        25.91        17.49        10.16 
TCGA-EW-A6S9 TCGA-EW-A6SD TCGA-GM-A2DF TCGA-HN-A2NL TCGA-LD-A7W5 TCGA-LL-A441 
       15.22        33.21        70.85         2.60         7.10        32.75 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ 
       15.32        14.70        16.08        15.68        14.50        19.53 
TCGA-LL-A7T0 TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I 
       12.36        58.62        36.36        22.32        20.38        23.47 
TCGA-OL-A6VO TCGA-PE-A5DC TCGA-PE-A5DE TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z 
       28.21        47.01        86.96         9.93        18.81        20.68 
TCGA-S3-AA10 TCGA-UL-AAZ6 TCGA-Z7-A8R5 
       19.27        17.03       108.07 

$`AMP PEAK  8(6P23) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
      131.67        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68         7.96        39.32        19.20        18.21       143.15 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y 
       78.41       121.94        87.25        63.12       101.98        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12       114.81        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D1 TCGA-A2-A0D3 
       77.19         5.19        98.99       107.93        34.55        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       25.22       101.72        89.36        80.28       118.45        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU 
       72.00        34.29        61.94        24.72        99.19        54.64 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T3 
       27.12        44.88        50.43        44.28        17.13        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       20.52        17.46        18.90        32.55        25.28        50.47 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FV TCGA-A2-A1FZ 
       21.67        49.48        19.33        48.46        23.47        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       20.25        19.20        19.56        16.47        52.47       107.70 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XU 
      105.34        10.59        36.23        39.65        91.07        29.98 
TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A2-A4S3 
       50.37        24.39        21.30        23.21        21.14        21.90 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13E TCGA-A7-A13G 
       34.29        35.47        37.45        33.11        20.19        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A2KD 
       29.56        31.36        24.26        23.74        23.80        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 
       11.34        10.59        10.29        11.28        13.41        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW 
       14.93        13.74        12.10        10.72        11.05         9.37 
TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U 
       10.42         8.75        13.02         1.02        53.06        29.03 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G 
       26.01         1.02         9.01        43.00        19.99        18.97 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07Z TCGA-A8-A084 
       32.05         9.99        10.98         7.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
       36.95        13.02         0.99        19.96        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 
        9.99        31.00       112.08        40.01        33.01        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09K 
       41.98        12.00         9.99        50.04        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       33.07         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB 
       17.03        73.91         5.72         1.48        99.35        40.57 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       86.66        90.71        60.92        87.12        26.04        74.14 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 
       22.19        24.13        25.05        14.99        19.79        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A62V 
       23.24        24.79        29.26        16.80        14.53        11.44 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP 
       17.42        18.67        12.26         1.68         8.22        20.19 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A0AK 
        1.32         2.30         0.33         0.33         0.62         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF 
        7.46         0.16         0.33         0.33         6.44         5.65 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FZ TCGA-AN-A0XL 
        7.17         6.90         7.04         0.33         0.33         5.36 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
       12.33         0.30         0.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
        5.33         5.59        81.63        95.70        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J6 
       58.95        29.13        32.78        21.40        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A125 TCGA-AO-A126 
       76.77        65.10        50.24        62.04        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      106.78        90.58        64.04        57.30        48.36        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KT 
       40.57        14.73        82.62        61.87        70.39        17.79 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N 
       24.79        26.93       130.09        15.62        32.52         2.56 
TCGA-AQ-A54O TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ 
       32.91        98.33       109.02        64.83        55.86       107.24 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22        83.87       134.14       107.21       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      103.86        97.68        98.33        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K 
       99.32        17.23        37.81        86.53        86.43        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R 
       94.22       120.33        99.78       118.59         2.76       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27        77.69       105.30        32.58        98.76 
TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A256 TCGA-AR-A2LE 
       98.66        99.62        93.30        85.64        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       40.54        73.35        33.30        38.96        10.59        77.62 
TCGA-B6-A0I5 TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      281.29       129.57        50.70        65.72       146.50       112.37 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH 
       18.77       127.33       129.07       140.88       255.68       212.25 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ 
      234.28        81.17        78.02       263.28       102.77       140.48 
TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
       89.46       157.41        97.48        79.63        18.35        21.47 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KI 
      206.86       129.70        28.27        68.94        58.88        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A401 TCGA-B6-A40B TCGA-BH-A0AU 
      139.17       170.17        37.87        85.35       103.63        62.93 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       63.09        81.44        40.83        39.16        70.22        84.13 
TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       51.68        32.02        18.21        21.70        61.68        72.23 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C0 
       74.14        76.60        53.95        49.94        77.95        41.75 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI 
       89.06        90.97        45.83        77.98        23.44        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        17.26        15.65         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI 
        9.63        44.81        46.19        32.58        31.00        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        37.78        53.26        24.56 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       41.00        52.96        26.50        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W3 
       13.61        12.89        51.32        27.25        50.79        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       24.95        42.35        32.91         4.90        35.93        20.12 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX 
       51.16       113.82        82.85        42.28        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB 
       17.69        25.81        89.16        97.48        24.62       120.62 
TCGA-BH-A1FD TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       33.17       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A28O 
      144.59        72.07        28.14        26.14        83.31        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A5IZ TCGA-BH-A5J0 
        6.44        20.12        10.52       109.28        18.64        23.51 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L 
        5.26         9.70        18.87        21.76         9.44        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12Y 
       11.77        11.77        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE 
       12.56        13.51        12.59        12.92         4.11        12.33 
TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W 
       10.92        11.28        10.42        12.95        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95         8.28         9.67         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.50        24.56        14.43        33.99        12.95        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 
       12.49        13.41        19.46        56.81        13.25        20.58 
TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JC 
       13.48        21.14        19.20        17.49        16.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.15        18.90        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.12        19.40        20.38        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XB 
       14.70        17.79        16.73        25.74        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XM TCGA-D8-A1XO 
       12.39        17.16        15.22        14.73        17.69        55.30 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1Y0 
       15.85        16.31        12.99        15.16        43.04        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
        9.93        14.24        17.42        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T 
       48.03        16.41        13.48         4.80         1.61        13.08 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.26        33.37        18.51        21.67        16.18        12.66 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       25.22        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       37.51        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       32.02        69.34        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15C TCGA-E2-A15E TCGA-E2-A15F 
       21.04        23.87        14.79        22.82        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B1 
       50.79        19.56        56.94        51.39        76.57        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE 
       33.01        32.35        28.50        16.47        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IO TCGA-E2-A1IU 
       37.41        33.73        28.44        59.18        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       54.18        60.36        73.64        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LK TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 
       28.90       106.75         8.75        34.55        43.56        30.61 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NC 
       34.29        34.82        32.88        36.82        22.29        39.55 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.24        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA 
       34.95         2.56         6.12         3.02        11.15        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
       32.09        40.24         1.12        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 
       41.72        40.73        40.50        20.12        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA 
        7.13        24.56        29.72         9.47        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UP TCGA-E9-A6HE 
       30.44        23.90        26.70         0.79        26.40        27.85 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 
       16.57        15.68        29.95        29.85        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       52.96        23.11        30.08        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW 
       13.94        10.52        34.55        55.00        52.73        22.09 
TCGA-EW-A3E8 TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GI-A2C8 
       34.03        23.51        16.77        24.99        31.30         7.40 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD 
      109.87        59.57       216.76        79.10        83.34        75.02 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
       85.35       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       72.03        13.55        18.12        62.47        11.84        11.57 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 
       21.24        13.22        13.28        10.62        24.95        29.23 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ 
       25.05        17.06        14.47        14.79        22.26         2.63 
TCGA-LL-A73Z TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
        7.46        19.59        17.49        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       36.30        58.52        31.99        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N 
       24.72        26.70        65.62        41.92        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD 
       17.36        14.07        19.73        40.11         8.91        64.21 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA12 
        0.16         0.26        18.48        21.07        13.84        18.87 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G 
       17.39        17.26        13.94         3.81        66.84        11.41 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       107.05 

  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                       0.03                        0.03 
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                     282.90                      281.29 
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                      25.55                       28.87 
[1] "0.0 - 282.9 (25.6)" "0.0 - 281.3 (28.9)"
[1] "hr=" "1"  
D8V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  8(6P23) MUTATED        21       14        1        0       102
  AMP PEAK  8(6P23) WILD-TYPE      68       71        5        6       251
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  8(6P23) MUTATED          74         0         47         11
  AMP PEAK  8(6P23) WILD-TYPE       178         2        107         18
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  8(6P23) MUTATED           20        4         0       4
  AMP PEAK  8(6P23) WILD-TYPE         45       16         1       9
D8V3, multiclass
            clus
vv           AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  STAGE I                           21                          68
  STAGE IA                          14                          71
  STAGE IB                           1                           5
  STAGE II                           0                           6
  STAGE IIA                        102                         251
  STAGE IIB                         74                         178
  STAGE III                          0                           2
  STAGE IIIA                        47                         107
  STAGE IIIB                        11                          18
  STAGE IIIC                        20                          45
  STAGE IV                           4                          16
  STAGE TIS                          0                           1
  STAGE X                            4                           9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  AMP PEAK  8(6P23) MUTATED    55 197  34  12
  AMP PEAK  8(6P23) WILD-TYPE 221 427 102  28
D8V4, multiclass
    clus
vv   AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  T1                        55                         221
  T2                       197                         427
  T3                        34                         102
  T4                        12                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  AMP PEAK  8(6P23) MUTATED   136  92  42  21
  AMP PEAK  8(6P23) WILD-TYPE 371 266  77  56
D8V5, multiclass
    clus
vv   AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  N0                       136                         371
  N1                        92                         266
  N2                        42                          77
  N3                        21                          56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V6, binary
                             cls
clus                            0   1
  AMP PEAK  8(6P23) MUTATED   251   5
  AMP PEAK  8(6P23) WILD-TYPE 638  17
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6P23) MUTATED    251    5
  AMP PEAK  8(6P23) WILD-TYPE  638   17
   clus
vv  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  0                       251                         638
  1                         5                          17
[1] 2 2
[1] FALSE
D8V7, binary
                             cls
clus                            0   1
  AMP PEAK  8(6P23) MUTATED   298   1
  AMP PEAK  8(6P23) WILD-TYPE 770  11
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6P23) MUTATED    298    1
  AMP PEAK  8(6P23) WILD-TYPE  770   11
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  FEMALE                       298                         770
  MALE                           1                          11
[1] 2 2
[1] FALSE
D8V8, binary
                             cls
clus                            0   1
  AMP PEAK  8(6P23) MUTATED   112 151
  AMP PEAK  8(6P23) WILD-TYPE 317 367
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6P23) MUTATED    112  151
  AMP PEAK  8(6P23) WILD-TYPE  317  367
     clus
vv    AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  NO                        112                         317
  YES                       151                         367
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  AMP PEAK  8(6P23) MUTATED                            0
  AMP PEAK  8(6P23) WILD-TYPE                          1
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  8(6P23) MUTATED                             247
  AMP PEAK  8(6P23) WILD-TYPE                           523
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  8(6P23) MUTATED                               26
  AMP PEAK  8(6P23) WILD-TYPE                            174
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  8(6P23) MUTATED                     4                     4
  AMP PEAK  8(6P23) WILD-TYPE                   2                     5
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  8(6P23) MUTATED                                  5
  AMP PEAK  8(6P23) WILD-TYPE                               24
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  8(6P23) MUTATED                    2             10
  AMP PEAK  8(6P23) WILD-TYPE                 15             37
D8V9, multiclass
                                  clus
vv                                 AMP PEAK  8(6P23) MUTATED
  INFILTRATING CARCINOMA NOS                               0
  INFILTRATING DUCTAL CARCINOMA                          247
  INFILTRATING LOBULAR CARCINOMA                          26
  MEDULLARY CARCINOMA                                      4
  METAPLASTIC CARCINOMA                                    4
  MIXED HISTOLOGY (PLEASE SPECIFY)                         5
  MUCINOUS CARCINOMA                                       2
  OTHER  SPECIFY                                          10
                                  clus
vv                                 AMP PEAK  8(6P23) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            523
  INFILTRATING LOBULAR CARCINOMA                           174
  MEDULLARY CARCINOMA                                        2
  METAPLASTIC CARCINOMA                                      5
  MIXED HISTOLOGY (PLEASE SPECIFY)                          24
  MUCINOUS CARCINOMA                                        15
  OTHER  SPECIFY                                            37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  8(6P23) MUTATED                                  0    15
  AMP PEAK  8(6P23) WILD-TYPE                                1    45
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  8(6P23) MUTATED                          70   185
  AMP PEAK  8(6P23) WILD-TYPE                       111   560
D8V11, multiclass
                                  clus
vv                                 AMP PEAK  8(6P23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                   15
  BLACK OR AFRICAN AMERICAN                               70
  WHITE                                                  185
                                  clus
vv                                 AMP PEAK  8(6P23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     45
  BLACK OR AFRICAN AMERICAN                                111
  WHITE                                                    560
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V12, binary
                             cls
clus                            0   1
  AMP PEAK  8(6P23) MUTATED    12 236
  AMP PEAK  8(6P23) WILD-TYPE  27 639
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6P23) MUTATED     12  236
  AMP PEAK  8(6P23) WILD-TYPE   27  639
                        clus
vv                       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  HISPANIC OR LATINO                            12                          27
  NOT HISPANIC OR LATINO                       236                         639
[1] 2 2
[1] FALSE

Clustering(9) Variable = AMP PEAK  9(6Q21) MUTATION ANALYSIS
D9V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  9(6Q21) MUTATED   169  32
  AMP PEAK  9(6Q21) WILD-TYPE 748 115
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        201                         863 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         32                         115 
$`AMP PEAK  9(6Q21) MUTATED`
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04W 
       13.68        31.79        28.01        19.20        63.12       101.98 
TCGA-A2-A0CM TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0EQ TCGA-A2-A0EY TCGA-A2-A0ST 
       24.79        67.33        33.76        79.76        63.29        99.19 
TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0YE TCGA-A2-A0YJ TCGA-A2-A1G1 TCGA-A2-A3XT 
       17.52         8.38        18.21        18.61        19.20        91.07 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A7-A0CE TCGA-A7-A0DA 
       47.31        35.93        24.39        26.96        35.31        35.67 
TCGA-A7-A0DC TCGA-A7-A425 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A5ZV 
       29.79        14.70        14.50        21.17        17.92        12.10 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A07F TCGA-A8-A07R TCGA-A8-A084 
       29.03        31.00        17.03        18.97         8.98        15.06 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S 
       38.01        28.96         9.99        31.00         0.99        33.01 
TCGA-A8-A09B TCGA-A8-A09N TCGA-A8-A0AB TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A5XU 
       12.00         1.02        17.03         0.95        22.95        14.96 
TCGA-AC-A62X TCGA-AC-A7VC TCGA-AN-A03Y TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AM 
       13.71         0.03         0.33         1.78         9.96         0.16 
TCGA-AN-A0AR TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FY TCGA-AN-A0XN TCGA-AN-A0XU 
        0.33         7.96         7.00         0.33         0.33         0.33 
TCGA-AN-A0XW TCGA-AO-A03O TCGA-AO-A0J4 TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12B 
        5.59        81.63        52.18       115.27       108.03        98.27 
TCGA-AO-A12G TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 
       41.62        70.39         0.53        26.93       130.09         5.65 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10       109.02        75.22        98.93        65.36       133.22 
TCGA-AR-A1AI TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24Q 
      108.36        94.29        61.28        33.73       160.90       104.28 
TCGA-AR-A251 TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LR TCGA-B6-A0I9 TCGA-B6-A0IO 
       99.62        93.83        66.15        57.27        12.13       165.76 
TCGA-B6-A0RS TCGA-B6-A402 TCGA-B6-A409 TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      100.70        70.16        18.84        59.84        20.45        25.55 
TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0C1 
       39.55        81.63        43.53        61.51        74.89        44.02 
TCGA-BH-A0DZ TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0HQ TCGA-BH-A18Q TCGA-BH-A18U 
       16.27         9.63        24.49        36.85        55.63        51.39 
TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1FE TCGA-BH-A1FN 
       91.99        12.00        25.81        97.48        74.73        72.07 
TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       38.60        57.83        20.88        18.64        23.51        11.93 
TCGA-C8-A12Q TCGA-C8-A130 TCGA-C8-A137 TCGA-C8-A1HG TCGA-C8-A1HM TCGA-C8-A278 
       12.66         3.16         4.11        11.34        12.33         9.50 
TCGA-C8-A27B TCGA-C8-A8HP TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A147 
       14.43        13.02        20.88        13.97        14.17        19.20 
TCGA-D8-A1J8 TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JP TCGA-D8-A1X5 
       14.17        53.00        20.09        20.09        21.01        18.58 
TCGA-D8-A1XD TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XY TCGA-D8-A1XZ 
       17.16        21.80        14.50        16.41        16.54        15.32 
TCGA-D8-A27F TCGA-D8-A27V TCGA-E2-A10C TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14T 
       16.04        12.53        40.11        40.96        38.60        75.98 
TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A155 TCGA-E2-A159 
       34.26        31.96        18.51        63.62        21.04        25.05 
TCGA-E2-A15M TCGA-E2-A1B0 TCGA-E2-A1IE TCGA-E2-A1II TCGA-E2-A1L7 TCGA-E2-A1LH 
       11.05        53.62        77.65        33.70        60.36       106.75 
TCGA-E2-A2P5 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N8 TCGA-E9-A1N9 
       26.99        34.92        38.76        17.69        34.16        36.20 
TCGA-E9-A1RF TCGA-E9-A248 TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A3QA TCGA-EW-A1OV 
        6.58         1.94        12.33        38.07        30.18        25.94 
TCGA-EW-A1OW TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A3U0 
       22.82        29.82        18.48        30.08         7.86        17.49 
TCGA-EW-A423 TCGA-EW-A6S9 TCGA-EW-A6SD TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DF 
       10.16        15.22        33.21       109.87        79.10        70.85 
TCGA-GM-A2DH TCGA-GM-A3XL TCGA-HN-A2NL TCGA-LD-A7W5 TCGA-LL-A5YN TCGA-LL-A6FR 
       72.10        69.30         2.60         7.10        14.70        16.08 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7T0 TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5S0 
       15.68         7.46        12.36        58.62        36.36        20.38 
TCGA-PL-A8LZ TCGA-S3-AA0Z TCGA-Z7-A8R5 
        9.93        20.68       108.07 

$`AMP PEAK  9(6Q21) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF 
       48.36         9.96         8.52        14.37        43.43        48.10 
TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ 
       14.27        47.24        20.88         7.96        39.32        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
      143.15        18.02        78.41       121.94        73.84        87.25 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43        36.13       136.73        99.12       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       88.60       107.93        77.19        75.25         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
      107.93        56.81        34.55        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       89.36        80.28       118.45        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0SU TCGA-A2-A0SV 
       34.29        31.82        61.94        24.72        54.64        27.12 
TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.88        50.43        44.28        17.13        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       17.46        18.90        20.75        32.55        25.28        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.90        21.67        49.48        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C 
       19.56        16.47        52.47       107.70        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW 
       29.98        32.75        56.28        50.37        50.83         7.30 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG 
       21.30        23.21        21.14        21.90        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E 
       35.47        30.61        37.45        33.11        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       25.15        23.61        29.56        31.36        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.29        11.28        13.41        11.97        14.93        13.74 
TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       14.73        10.72        11.05        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
        8.75        13.02        13.02         1.02        17.98        53.06 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E 
       26.01         1.02        53.98         9.01        43.00        19.99 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A086 
        7.99        24.99         9.99        45.07        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O 
        0.99        33.01        19.96        12.00        37.05        31.00 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
      112.08        43.00        40.01        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D 
       41.98        12.00         9.99         9.99         1.02        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09R 
       49.05        45.07        29.98        33.07        25.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AD TCGA-AC-A23G 
       13.02        21.04         0.99        27.02        38.04        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72         1.48        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       22.19        24.13        25.05        14.99        16.57        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI 
       15.48        23.24        24.79        29.26        16.80        14.53 
TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX 
       19.33        11.44        17.42        18.67        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS 
        1.68         8.22        20.19         1.12         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D 
        0.33         0.23         0.33         0.62         2.96         1.71 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        7.36         7.46         0.33         0.33         6.44         5.65 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        7.59         7.17         6.90         7.04         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.33         0.33         5.36        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         0.33         5.33        80.28        61.35        66.77 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        47.87        58.95        29.13        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       21.40        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A125 
       26.24        50.24        62.04        55.33        71.80        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.72       106.78        90.58        64.04        57.30        48.36 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KT TCGA-AQ-A04H 
       40.57        14.73        82.62        61.87        17.79        24.79 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP 
       15.62        32.52         2.56        32.91        19.20       140.55 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U2 
       98.33         5.26        64.83        55.86       107.24        83.87 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       107.21       125.16       101.00       103.86        97.68 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR 
       98.33        96.00        86.07        93.90        99.32        17.23 
TCGA-AR-A1AS TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       37.81        86.53        86.43        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
       99.78       118.59         2.76       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
       77.69       105.30        32.58        98.76        98.66        89.00 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       93.30        85.64        71.05       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM 
       54.21        63.62        38.17        39.39        40.54        73.35 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.72       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ 
      233.62        18.77       127.33        84.59       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      255.68        68.45       212.25       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.48        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      157.41        97.48       188.68        79.63        18.35        21.47 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.88        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C 
       37.87         7.07        85.35        68.12       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 
       62.93        63.09        81.44        40.83        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BJ 
       84.13        51.68        37.22        32.02        18.21        21.70 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        53.95 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C3 
       45.57        49.94        77.95        49.05        41.75        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        45.83        77.98        23.44        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       13.91        78.28        17.26        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       38.47        67.86        70.88         4.41        15.68        14.30 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        46.19        32.58        31.00        24.43        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        37.78        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       41.00        52.96        26.50        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       13.61        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18V 
       37.74        30.28        37.55        66.05         7.36        51.16 
TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX 
       67.50       113.82        82.85        42.28        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC 
       17.69        31.53        89.16        24.62       120.62       114.15 
TCGA-BH-A1FD TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       33.17       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A209 
      144.59        72.07        28.14        26.14        83.31       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A6R8 
       10.65         6.44        20.12        10.52       109.28         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M 
        5.26         9.70        18.87        21.76         9.44        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       12.66        48.53        12.56        13.51         1.87        12.59 
TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.92         4.08        12.33        10.92        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        10.42        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95         8.28         9.67         9.53         0.03 
TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ 
       24.56        33.99        12.95        12.49        13.41        19.46 
TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J9 
       56.81        13.25        20.58        13.48        21.14        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       16.50        55.50        15.78        18.15        18.90        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS 
       14.01        18.97        20.12        19.40        20.38        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       13.32        14.70        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XL 
       27.58        18.15        12.39        15.22        14.73        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       17.69        55.30        15.85        16.31        16.64        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       15.16        43.04        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       17.42        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27W 
       13.48         4.80         1.61        10.09        13.08        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18        12.66        25.22 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14S 
       28.44        28.87        47.15        44.68        38.24        33.17 
TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       43.33        32.02        69.34        69.96        23.24        19.43 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        14.79        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        50.79        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       76.57        87.22        33.01        32.35        28.50        16.47 
TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.25        37.41        70.36        33.73        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 
        3.88        22.19        60.99        11.08        54.18        73.64 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90        50.07       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
        8.75        43.04        34.55        43.56         8.28        30.61 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NA 
       34.29        34.82        32.88        36.82        22.29        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
        1.12        46.65        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 
        7.13        24.56        29.72         9.47        32.91        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       27.85        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        15.68        28.77        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1PA 
       40.41        41.13        39.78        52.96        23.11        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG 
       19.99         6.15        13.94        10.52        14.43        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GM-A2D9 
       23.51        16.77        24.99        31.30         7.40        59.57 
TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
      216.76        83.34        75.02        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW 
       66.38        72.03        13.55        18.12        62.47        11.84 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       11.57        21.24        13.22        13.28        10.62        24.95 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO 
       32.75        29.23        25.05        17.06        15.32        14.47 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A8F5 
       14.79        22.26         2.63        14.50        19.53        19.59 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       17.49        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       31.99        40.08        34.92        28.87        24.72        22.32 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N 
       26.70        23.47        65.62        41.92        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       17.36        14.07        28.21        19.73        40.11         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZF 
       47.01        64.21        86.96         0.16         0.26        18.81 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       18.48        21.07        19.27        13.84        18.87        17.39 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G 
       17.26        13.94        17.03         3.81        66.84        11.41 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       107.05 

  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                       0.03                        0.03 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                     165.76                      282.90 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                      25.05                       28.44 
[1] "0.0 - 165.8 (25.1)" "0.0 - 282.9 (28.4)"
[1] "hr=" "1.4"
D9V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK  9(6Q21) MUTATED        11        9        1        0        83
  AMP PEAK  9(6Q21) WILD-TYPE      78       76        5        6       270
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  9(6Q21) MUTATED          51         0         28          3
  AMP PEAK  9(6Q21) WILD-TYPE       201         2        126         26
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK  9(6Q21) MUTATED            9        4         0       0
  AMP PEAK  9(6Q21) WILD-TYPE         56       16         1      13
D9V3, multiclass
            clus
vv           AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  STAGE I                           11                          78
  STAGE IA                           9                          76
  STAGE IB                           1                           5
  STAGE II                           0                           6
  STAGE IIA                         83                         270
  STAGE IIB                         51                         201
  STAGE III                          0                           2
  STAGE IIIA                        28                         126
  STAGE IIIB                         3                          26
  STAGE IIIC                         9                          56
  STAGE IV                           4                          16
  STAGE TIS                          0                           1
  STAGE X                            0                          13
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  AMP PEAK  9(6Q21) MUTATED    34 142  22   4
  AMP PEAK  9(6Q21) WILD-TYPE 242 482 114  36
D9V4, multiclass
    clus
vv   AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  T1                        34                         242
  T2                       142                         482
  T3                        22                         114
  T4                         4                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  AMP PEAK  9(6Q21) MUTATED   106  58  26  10
  AMP PEAK  9(6Q21) WILD-TYPE 401 300  93  67
D9V5, multiclass
    clus
vv   AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  N0                       106                         401
  N1                        58                         300
  N2                        26                          93
  N3                        10                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V6, binary
                             cls
clus                            0   1
  AMP PEAK  9(6Q21) MUTATED   172   4
  AMP PEAK  9(6Q21) WILD-TYPE 717  18
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q21) MUTATED    172    4
  AMP PEAK  9(6Q21) WILD-TYPE  717   18
   clus
vv  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  0                       172                         717
  1                         4                          18
[1] 2 2
[1] FALSE
D9V7, binary
                             cls
clus                            0   1
  AMP PEAK  9(6Q21) MUTATED   201   1
  AMP PEAK  9(6Q21) WILD-TYPE 867  11
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q21) MUTATED    201    1
  AMP PEAK  9(6Q21) WILD-TYPE  867   11
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  FEMALE                       201                         867
  MALE                           1                          11
[1] 2 2
[1] FALSE
D9V8, binary
                             cls
clus                            0   1
  AMP PEAK  9(6Q21) MUTATED    79  97
  AMP PEAK  9(6Q21) WILD-TYPE 350 421
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q21) MUTATED     79   97
  AMP PEAK  9(6Q21) WILD-TYPE  350  421
     clus
vv    AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  NO                         79                         350
  YES                        97                         421
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  AMP PEAK  9(6Q21) MUTATED                            1
  AMP PEAK  9(6Q21) WILD-TYPE                          0
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  AMP PEAK  9(6Q21) MUTATED                             171
  AMP PEAK  9(6Q21) WILD-TYPE                           599
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  AMP PEAK  9(6Q21) MUTATED                               15
  AMP PEAK  9(6Q21) WILD-TYPE                            185
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK  9(6Q21) MUTATED                     3                     5
  AMP PEAK  9(6Q21) WILD-TYPE                   3                     4
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK  9(6Q21) MUTATED                                  1
  AMP PEAK  9(6Q21) WILD-TYPE                               28
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK  9(6Q21) MUTATED                    0              6
  AMP PEAK  9(6Q21) WILD-TYPE                 17             41
D9V9, multiclass
                                  clus
vv                                 AMP PEAK  9(6Q21) MUTATED
  INFILTRATING CARCINOMA NOS                               1
  INFILTRATING DUCTAL CARCINOMA                          171
  INFILTRATING LOBULAR CARCINOMA                          15
  MEDULLARY CARCINOMA                                      3
  METAPLASTIC CARCINOMA                                    5
  MIXED HISTOLOGY (PLEASE SPECIFY)                         1
  MUCINOUS CARCINOMA                                       0
  OTHER  SPECIFY                                           6
                                  clus
vv                                 AMP PEAK  9(6Q21) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            599
  INFILTRATING LOBULAR CARCINOMA                           185
  MEDULLARY CARCINOMA                                        3
  METAPLASTIC CARCINOMA                                      4
  MIXED HISTOLOGY (PLEASE SPECIFY)                          28
  MUCINOUS CARCINOMA                                        17
  OTHER  SPECIFY                                            41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  9(6Q21) MUTATED                                  0    10
  AMP PEAK  9(6Q21) WILD-TYPE                                1    50
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  9(6Q21) MUTATED                          45   128
  AMP PEAK  9(6Q21) WILD-TYPE                       136   617
D9V11, multiclass
                                  clus
vv                                 AMP PEAK  9(6Q21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                   10
  BLACK OR AFRICAN AMERICAN                               45
  WHITE                                                  128
                                  clus
vv                                 AMP PEAK  9(6Q21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     50
  BLACK OR AFRICAN AMERICAN                                136
  WHITE                                                    617
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V12, binary
                             cls
clus                            0   1
  AMP PEAK  9(6Q21) MUTATED     8 160
  AMP PEAK  9(6Q21) WILD-TYPE  31 715
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q21) MUTATED      8  160
  AMP PEAK  9(6Q21) WILD-TYPE   31  715
                        clus
vv                       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  HISPANIC OR LATINO                             8                          31
  NOT HISPANIC OR LATINO                       160                         715
[1] 2 2
[1] FALSE

Clustering(10) Variable = AMP PEAK 10(8P11.23) MUTATION ANALYSIS
D10V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 10(8P11.23) MUTATED   337  69
  AMP PEAK 10(8P11.23) WILD-TYPE 580  78
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           406                            658 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                            69                             78 
$`AMP PEAK 10(8P11.23) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SE TCGA-A1-A0SF 
      129.14       131.67        42.81         9.96        43.43        48.10 
TCGA-A1-A0SG TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A2-A04N TCGA-A2-A04T TCGA-A2-A04V 
       14.27        13.68        31.79       143.15        73.84        63.12 
TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0D0 
       24.79        92.48        75.25         5.19        98.99        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0ER 
       34.55        33.76        61.58        25.22        80.28        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0SV 
       72.00        34.29        31.82        61.94        24.72        27.12 
TCGA-A2-A0SW TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YE 
       44.88         8.38        49.84        17.46        18.90        18.21 
TCGA-A2-A0YH TCGA-A2-A0YK TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1G0 
       21.67        19.33        23.77        23.47        60.72        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A25D TCGA-A2-A3XT TCGA-A2-A4RX TCGA-A2-A4RY 
       19.20        19.56        18.15        91.07        24.39        21.30 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0D9 
       26.96        21.14        21.90        38.30        30.61        37.45 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       29.79        20.19        25.15        24.26        23.80        21.73 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A5ZV TCGA-A7-A5ZW 
       10.59        10.29        11.97        14.50        12.10        10.72 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A076 
       13.02         1.02        17.98        29.03        26.01        53.98 
TCGA-A8-A07F TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07W TCGA-A8-A086 TCGA-A8-A08C 
       18.97        32.05        10.98         9.99        13.02        28.96 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08O TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08Z 
       33.01        19.96        31.00         0.99       112.08        40.01 
TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C 
       33.01        17.95        12.00         9.99        12.00         1.02 
TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09X 
       49.05        29.98        33.07        25.02         8.98        14.01 
TCGA-A8-A0A2 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2BM 
       19.04        27.02        17.03        22.95        73.91        99.35 
TCGA-AC-A2FE TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3EH TCGA-AC-A3QP TCGA-AC-A3YI 
       86.66        26.04        74.14         6.48        22.19        23.24 
TCGA-AC-A5EI TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A6IX 
       14.53        14.96        11.44        13.71        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AN-A03X TCGA-AN-A0FD TCGA-AN-A0FK 
        1.68         8.22         0.03         0.33         6.44         7.00 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XO 
        0.36         0.33         0.33         0.33         0.33        12.33 
TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J3 
        0.33         5.33        81.63        68.75        32.78        21.40 
TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JI 
       26.04        20.32        21.53        50.70        72.00        50.24 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A128 TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A1KP 
       55.33        71.80       106.78        98.27        57.30        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O 
       61.87         0.53        17.79        32.52         2.56        32.91 
TCGA-AR-A0TS TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 
       84.10        98.93        55.86        83.87       134.14       107.21 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AU 
      125.16       108.36       101.00        99.32        17.23        94.29 
TCGA-AR-A24H TCGA-AR-A24R TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A250 TCGA-AR-A256 
      160.90       112.77       105.30        32.58        89.00        93.83 
TCGA-AR-A2LH TCGA-AR-A2LK TCGA-AR-A2LO TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I2 
       20.25        54.21        39.39        33.30        38.96       143.38 
TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM 
      281.29       275.87       129.57       112.37       233.62       127.33 
TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RP TCGA-B6-A0RV TCGA-B6-A0WS 
       68.45        81.17        78.02       102.77       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X1 
      188.68        79.63        18.35        21.47       113.79       245.10 
TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A400 TCGA-B6-A401 
       68.94        43.59       139.17       170.17         7.07        85.35 
TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0AY TCGA-BH-A0B2 TCGA-BH-A0BA TCGA-BH-A0BD 
       68.12        62.93        25.55        40.83        37.22        18.21 
TCGA-BH-A0BT TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DP 
       45.57        49.05        44.02        29.98        78.28        15.65 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0EI 
        2.56        38.47        15.68        14.30         9.63        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0HQ 
       30.35        10.78        24.56        23.08        26.50        36.85 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
       51.32        27.25        50.79        42.35        44.81        23.05 
TCGA-BH-A18I TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
       35.93        66.05        51.39        67.50        91.99       113.82 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 
       42.28        12.00        49.58        25.81        31.53        89.16 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FH TCGA-BH-A1FM TCGA-BH-A201 
       24.62       114.15        33.17        36.92        45.63        28.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A42T TCGA-BH-A42V 
       38.60        83.31        57.83       130.16        10.52        20.88 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12V 
       23.51         9.63        11.77        12.66        11.77        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A132 TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK 
       12.66        12.66         1.87        11.34        11.28        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A27A 
       12.33        12.95        12.33         8.28         9.67        24.56 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z 
       12.95        13.02        13.41        19.46        56.81        20.88 
TCGA-D8-A141 TCGA-D8-A147 TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI 
       20.58        19.20        15.78        12.03        14.01        18.97 
TCGA-D8-A1JL TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1XB TCGA-D8-A1XD 
       20.09        13.32        14.70        17.79        18.15        17.16 
TCGA-D8-A1XF TCGA-D8-A1XK TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y1 
       15.22        14.50        16.64        16.54        15.32         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27I TCGA-D8-A27L TCGA-D8-A27R TCGA-D8-A27V 
       14.24        14.14        14.43        16.41        10.09        12.53 
TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10C 
       12.26        43.00        34.42        46.59        40.41        40.11 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14T TCGA-E2-A154 TCGA-E2-A159 
       47.15        44.68        40.96        75.98        19.43        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15M TCGA-E2-A15O 
       23.34        22.82        17.29        21.63        11.05        50.79 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B6 
       56.94        14.07        51.39        76.57        53.62        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IN 
       37.25        77.65        70.36        33.73        33.70        22.19 
TCGA-E2-A1L6 TCGA-E2-A1LG TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A56Z TCGA-E2-A573 
       54.18        50.07         8.75        26.99         8.28        34.92 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NE 
       34.29        17.69        36.82        22.29        36.20        35.77 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
       34.95         2.56        11.15        45.01        32.09        40.24 
TCGA-E9-A1RE TCGA-E9-A228 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A243 
       46.65        42.25        39.09        38.37        41.72        20.12 
TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3X8 TCGA-E9-A54X 
       38.99        12.33        29.72         9.47        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UP TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1J1 
       23.84        26.70        26.40        39.72         8.48        18.90 
TCGA-EW-A1J6 TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P5 TCGA-EW-A1PA TCGA-EW-A1PB 
       28.77        40.41        41.13        23.11        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A6SA TCGA-GI-A2C8 TCGA-GM-A2D9 
        6.15        19.96        55.00        16.77         7.40        59.57 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DO TCGA-GM-A3NW TCGA-HN-A2NL TCGA-HN-A2OB 
       83.34        70.85        85.35       110.50         2.60        62.47 
TCGA-JL-A3YX TCGA-LD-A7W6 TCGA-LL-A440 TCGA-LL-A5YN TCGA-LL-A740 TCGA-LL-A7SZ 
       11.57        13.28        24.95        14.70        14.50        19.53 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A66I TCGA-OL-A66J 
       12.36        17.49        31.99        58.62        23.47        65.62 
TCGA-OL-A66N TCGA-OL-A6VR TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-S3-AA12 
       26.04        40.11        18.81        18.48        19.27        18.87 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 
        3.81        11.41        52.96        15.35 

$`AMP PEAK 10(8P11.23) WILD-TYPE`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD 
       40.14        11.44        48.56        48.36         8.52        14.37 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
       47.24        20.88         7.96        39.32        28.01        19.20 
TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04W 
       18.21        18.02        78.41       121.94        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CQ 
       55.43        36.13       136.73        99.12       114.81        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0EM TCGA-A2-A0EN 
      107.93        77.19       107.93        56.81       101.72        89.36 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU 
      118.45        79.76        35.05        63.29        99.19        54.64 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0T7 
       50.43        44.28        17.52        17.13        20.52        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YJ 
       32.55        25.28        50.47        21.90        49.48        18.61 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G6 TCGA-A2-A259 
       48.46        31.73        17.36        22.45        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
      107.70        42.44        17.19       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       39.65        33.93        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S0 TCGA-A7-A0CE 
       35.93        50.37        50.83         7.30        23.21        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13G 
       34.29        35.47        35.67        33.11        31.73        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY 
       29.56        31.36        23.74        20.61        22.32        11.34 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE 
       11.28        13.41        14.70        14.93        13.74        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       17.92        14.73        11.05        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 
        8.75        13.02        53.06        31.00         1.02        17.03 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
        9.01        43.00        19.99        18.97        14.01        12.00 
TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 
        9.99         8.98         7.99        24.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       36.95         0.99        38.01        12.00        37.05         9.99 
TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 
       31.00        33.01        43.00        30.97        41.98         9.99 
TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       50.04        45.07         1.02        19.04        15.02         0.99 
TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C 
       12.00        13.02        21.04         0.99        38.04         0.95 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG 
        5.72         1.48        73.05        40.57        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN 
       87.12        33.04        19.33        14.66        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       14.83        24.13        25.05        14.99        16.57        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5XS TCGA-AC-A62Y 
       15.48        24.79        29.26        16.80        19.33        17.42 
TCGA-AC-A6IV TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03Y 
       18.67        20.19         1.12         1.32         2.30         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.23         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        0.33         5.65         7.96         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        7.04         0.33         5.36         0.30         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03P 
        0.33         5.59        80.28        61.35        66.77        95.70 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J8 
       47.87        58.95        29.13        52.18        37.48        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JJ 
       53.03        50.86        76.77        65.10        26.24        62.04 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12D 
      115.27        99.25       108.72       108.03        90.58        64.04 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KR TCGA-AQ-A04H 
       48.36        41.62        40.57        14.73        70.39        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A7U7 TCGA-AR-A0TP 
       26.93       130.09         5.65        15.62        19.20       140.55 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TZ 
       98.33         5.26       109.02        75.22        64.83       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
       65.36       133.22       103.86        97.68        98.33        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       86.07        93.90        37.81        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       33.73        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24X 
        2.76       104.28        97.84       105.27        77.69        98.76 
TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE 
       98.66        99.62        93.30        85.64        71.05       166.42 
TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR 
       86.53        66.15        63.62        38.17        40.54        57.27 
TCGA-AR-A5QM TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I9 TCGA-B6-A0IC TCGA-B6-A0IE 
       73.35        10.59        77.62        12.13        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
      146.50        18.77        84.59       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ 
      255.68       212.25       234.28       263.28       162.05       140.48 
TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 
      100.70        89.46       282.90       206.86       129.70        28.27 
TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A3ZX TCGA-B6-A402 TCGA-B6-A409 
       58.88       101.52        73.51        37.87        70.16        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B0 
      103.63        71.15        59.84        20.45        63.09        81.44 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 
       39.55        39.16        70.22        81.63        84.13        51.68 
TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       32.02        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV 
       72.23        75.48        74.14        76.60        53.95        49.94 
TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       77.95        41.75        89.06        90.97        45.83        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DV 
       23.44        38.01        13.91        17.26         3.22        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       70.88        16.27         4.41        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H9 
       24.49        31.00        15.16        37.78        53.26        41.00 
TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU 
       52.96        20.38         5.85         2.50        13.61        12.89 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J 
        5.59        23.93        24.95        32.91         4.90        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1ET TCGA-BH-A1EW TCGA-BH-A1EY 
       37.55         7.36        51.16        82.85        55.69        17.69 
TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL 
       97.48       120.62        74.73       122.89        63.35        55.00 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A28O TCGA-BH-A28Q 
       72.07       144.59        72.07        26.14        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A5IZ TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ 
       20.12       109.28        18.64         5.26         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12Q TCGA-C8-A12U 
       21.76         9.44        11.93        11.77        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 
       48.53        12.56         3.16        13.51        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HL 
        4.11         4.08        12.33        10.92         0.16        10.42 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A275 
       20.25        12.53        12.36        12.95         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-D8-A140 TCGA-D8-A142 
        9.50        14.43        33.99        12.49        13.25        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       14.17        13.48        21.14        14.17        17.49        16.50 
TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JK 
       55.50        18.15        18.90        53.00        20.09        20.12 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1X5 TCGA-D8-A1X7 
       19.40        20.38        21.01        12.20        18.58        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XG TCGA-D8-A1XJ 
       25.74        23.90        27.58        12.39        14.73        21.80 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        55.30        16.41        15.85        16.31 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A27E TCGA-D8-A27F 
       12.99        15.16        43.04        15.52        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       13.45        13.05        48.03        13.48         4.80         1.61 
TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       13.08        33.37        18.51        21.67        16.18        12.66 
TCGA-D8-A73X TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14Q 
       25.22        27.52        37.51        28.44        28.87        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       38.60        33.17        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 
       69.34        18.51        63.62        69.96        23.24        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       23.87        14.79        20.71        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15P TCGA-E2-A1B1 TCGA-E2-A1B4 
       53.92         9.04        20.58        19.56        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1BC TCGA-E2-A1IF TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       32.35        16.47        37.41        28.44        59.18         3.88 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        60.36        73.64        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P6 
       75.81        28.90       106.75       102.61        43.04        34.55 
TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N8 
       43.56        30.61        38.76        34.82        32.88        34.16 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       36.56        39.55        41.62        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 
        9.86        24.82        28.27         6.12         3.02        48.23 
TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
        1.12         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A244 
       32.05        37.74        41.03        40.73        40.50         0.69 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
        1.94         7.13        24.56        38.07        32.91        30.18 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IZ TCGA-EW-A1J2 
        0.79        25.81        27.85        12.20        18.21        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY 
       16.57        15.68        25.94        22.82        29.95        29.85 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        52.96        29.82        18.48        30.08         7.86 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A2FV 
       13.94        10.52        14.43        34.55        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 
       22.09        34.03        17.49        10.16        23.51        15.22 
TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB 
       24.99        31.30        33.21       109.87       216.76        79.10 
TCGA-GM-A2DD TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       75.02        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      101.62        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       13.55        18.12        11.84        21.24        13.22         7.10 
TCGA-LD-A9QF TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
       10.62        32.75        29.23        25.05        17.06        15.32 
TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y 
       14.47        14.79        22.26         2.63        16.08        15.68 
TCGA-LL-A73Z TCGA-LL-A8F5 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
        7.46        19.59        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       58.52        40.08        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O 
       22.32        20.38        26.70        41.92        42.77        17.36 
TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD 
       14.07        28.21        19.73         8.91        47.01        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA0Z 
       86.96         0.16         0.26         9.93        21.07        20.68 
TCGA-S3-AA11 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-V7-A7HQ 
       13.84        17.39        17.26        13.94        17.03        66.84 
TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        16.04       108.07       107.05 

  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                          0.03                           0.03 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                        281.29                         282.90 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                         26.22                          28.87 
[1] "0.0 - 281.3 (26.2)" "0.0 - 282.9 (28.9)"
[1] "hr=" "1.4"
D10V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 10(8P11.23) MUTATED        24       29        4        1       135
  AMP PEAK 10(8P11.23) WILD-TYPE      65       56        2        5       218
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 10(8P11.23) MUTATED          94         2         57         16
  AMP PEAK 10(8P11.23) WILD-TYPE       158         0         97         13
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 10(8P11.23) MUTATED           30       11         0       6
  AMP PEAK 10(8P11.23) WILD-TYPE         35        9         1       7
D10V3, multiclass
            clus
vv           AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  STAGE I                              24                             65
  STAGE IA                             29                             56
  STAGE IB                              4                              2
  STAGE II                              1                              5
  STAGE IIA                           135                            218
  STAGE IIB                            94                            158
  STAGE III                             2                              0
  STAGE IIIA                           57                             97
  STAGE IIIB                           16                             13
  STAGE IIIC                           30                             35
  STAGE IV                             11                              9
  STAGE TIS                             0                              1
  STAGE X                               6                              7
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 10(8P11.23) MUTATED   102 240  49  19
  AMP PEAK 10(8P11.23) WILD-TYPE 174 384  87  21
D10V4, multiclass
    clus
vv   AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  T1                          102                            174
  T2                          240                            384
  T3                           49                             87
  T4                           19                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 10(8P11.23) MUTATED   173 146  48  36
  AMP PEAK 10(8P11.23) WILD-TYPE 334 212  71  41
D10V5, multiclass
    clus
vv   AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  N0                          173                            334
  N1                          146                            212
  N2                           48                             71
  N3                           36                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V6, binary
                                cls
clus                               0   1
  AMP PEAK 10(8P11.23) MUTATED   342  12
  AMP PEAK 10(8P11.23) WILD-TYPE 547  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8P11.23) MUTATED    342   12
  AMP PEAK 10(8P11.23) WILD-TYPE  547   10
   clus
vv  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  0                          342                            547
  1                           12                             10
[1] 2 2
[1] FALSE
D10V7, binary
                                cls
clus                               0   1
  AMP PEAK 10(8P11.23) MUTATED   408   4
  AMP PEAK 10(8P11.23) WILD-TYPE 660   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8P11.23) MUTATED    408    4
  AMP PEAK 10(8P11.23) WILD-TYPE  660    8
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  FEMALE                          408                            660
  MALE                              4                              8
[1] 2 2
[1] FALSE
D10V8, binary
                                cls
clus                               0   1
  AMP PEAK 10(8P11.23) MUTATED   162 198
  AMP PEAK 10(8P11.23) WILD-TYPE 267 320
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8P11.23) MUTATED    162  198
  AMP PEAK 10(8P11.23) WILD-TYPE  267  320
     clus
vv    AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  NO                           162                            267
  YES                          198                            320
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 10(8P11.23) MUTATED                            1
  AMP PEAK 10(8P11.23) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 10(8P11.23) MUTATED                             303
  AMP PEAK 10(8P11.23) WILD-TYPE                           467
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 10(8P11.23) MUTATED                               64
  AMP PEAK 10(8P11.23) WILD-TYPE                            136
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 10(8P11.23) MUTATED                     4                     4
  AMP PEAK 10(8P11.23) WILD-TYPE                   2                     5
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 10(8P11.23) MUTATED                                 11
  AMP PEAK 10(8P11.23) WILD-TYPE                               18
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 10(8P11.23) MUTATED                    5             19
  AMP PEAK 10(8P11.23) WILD-TYPE                 12             28
D10V9, multiclass
                                  clus
vv                                 AMP PEAK 10(8P11.23) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             303
  INFILTRATING LOBULAR CARCINOMA                             64
  MEDULLARY CARCINOMA                                         4
  METAPLASTIC CARCINOMA                                       4
  MIXED HISTOLOGY (PLEASE SPECIFY)                           11
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             19
                                  clus
vv                                 AMP PEAK 10(8P11.23) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               467
  INFILTRATING LOBULAR CARCINOMA                              136
  MEDULLARY CARCINOMA                                           2
  METAPLASTIC CARCINOMA                                         5
  MIXED HISTOLOGY (PLEASE SPECIFY)                             18
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               28
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 10(8P11.23) MUTATED                                  0    26
  AMP PEAK 10(8P11.23) WILD-TYPE                                1    34
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 10(8P11.23) MUTATED                          71   275
  AMP PEAK 10(8P11.23) WILD-TYPE                       110   470
D10V11, multiclass
                                  clus
vv                                 AMP PEAK 10(8P11.23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      26
  BLACK OR AFRICAN AMERICAN                                  71
  WHITE                                                     275
                                  clus
vv                                 AMP PEAK 10(8P11.23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        34
  BLACK OR AFRICAN AMERICAN                                   110
  WHITE                                                       470
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V12, binary
                                cls
clus                               0   1
  AMP PEAK 10(8P11.23) MUTATED    12 338
  AMP PEAK 10(8P11.23) WILD-TYPE  27 537
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8P11.23) MUTATED     12  338
  AMP PEAK 10(8P11.23) WILD-TYPE   27  537
                        clus
vv                       AMP PEAK 10(8P11.23) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          338
                        clus
vv                       AMP PEAK 10(8P11.23) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            537
[1] 2 2
[1] FALSE

Clustering(11) Variable = AMP PEAK 11(8P11.21) MUTATION ANALYSIS
D11V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 11(8P11.21) MUTATED   353  61
  AMP PEAK 11(8P11.21) WILD-TYPE 564  86
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           414                            650 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                            61                             86 
$`AMP PEAK 11(8P11.21) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-5T-A9QA TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SJ 
      129.14       131.67         9.96        43.43        14.27        13.68 
TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A2-A04N TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A0CM 
       31.79        28.01       143.15        73.84        63.12        24.79 
TCGA-A2-A0CP TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 
       92.48        75.25         5.19        98.99        56.81        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0ER 
       34.55        33.76        61.58        25.22        80.28        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EX TCGA-A2-A0SW TCGA-A2-A0T2 
       72.00        34.29        31.82        24.72        44.88         8.38 
TCGA-A2-A0T3 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YE TCGA-A2-A0YH TCGA-A2-A0YJ 
       49.84        17.46        18.90        18.21        21.67        18.61 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 
       31.73        23.77        23.47        60.72        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A25D TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3Y0 
       19.56        18.15        91.07        29.98        47.31        50.83 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD 
       24.39        21.30        26.96        21.14        21.90        38.30 
TCGA-A7-A0CJ TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26F TCGA-A7-A26H 
       30.61        29.79        20.19        25.15        24.26        23.80 
TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3J0 TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A5ZV 
       21.73        20.61        10.29        11.97        14.50        12.10 
TCGA-A7-A5ZW TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06Y 
       10.72        10.42        13.02        13.02         1.02        26.01 
TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O 
       53.98        43.00        18.97        14.01        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A086 TCGA-A8-A08C TCGA-A8-A08F 
       10.98         8.98         9.99        13.02        28.96        33.01 
TCGA-A8-A08G TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       19.96         0.99        33.01        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I 
       17.95         9.99        12.00         1.02        49.05        45.07 
TCGA-A8-A09M TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E 
       33.07        14.01        19.04        27.02        17.03        22.95 
TCGA-AC-A23G TCGA-AC-A2BM TCGA-AC-A2FE TCGA-AC-A2FM TCGA-AC-A3EH TCGA-AC-A3QP 
       73.91        99.35        86.66        26.04         6.48        22.19 
TCGA-AC-A3YI TCGA-AC-A5EI TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A6NO 
       23.24        14.53        11.44        13.71        13.58         1.68 
TCGA-AC-A7VC TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A0AS TCGA-AN-A0FK TCGA-AN-A0FW 
        0.03         0.33         0.33         0.33         7.00         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XS 
        0.33         0.33         0.33         0.33        12.33         0.33 
TCGA-AN-A0XV TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J6 
        5.33        81.63        68.75        32.78        21.40        37.48 
TCGA-AO-A0J7 TCGA-AO-A0JA TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A126 
       20.32        21.53        72.00        55.33        71.80       108.72 
TCGA-AO-A128 TCGA-AO-A12B TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
      106.78        98.27        82.62        61.87        70.39         0.53 
TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TS 
       24.79       130.09        32.52         2.56        32.91        84.10 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI 
       98.93        64.83       134.14       107.21       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AU TCGA-AR-A1AX TCGA-AR-A1AY 
      101.00        99.32        17.23        94.29        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24R TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A2LH 
      160.90       112.77        32.58        98.66        99.62        20.25 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LO TCGA-AR-A2LR TCGA-AR-A5QP TCGA-AR-A5QQ 
       54.21        66.15        39.39        57.27        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IH 
       77.62       143.38       281.29       275.87       129.57       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RM 
      233.62       127.33       255.68        68.45        81.17        78.02 
TCGA-B6-A0RP TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW 
      102.77       282.90       157.41        97.48       188.68        18.35 
TCGA-B6-A0WX TCGA-B6-A0X1 TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KN 
       21.47       245.10        68.94        43.59       101.52       139.17 
TCGA-B6-A2IU TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
      170.17         7.07        85.35        70.16        68.12        18.84 
TCGA-BH-A0AY TCGA-BH-A0B2 TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BT TCGA-BH-A0BV 
       25.55        40.83        37.22        18.21        45.57        49.94 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DS 
       49.05        41.75        44.02        78.28        15.65         2.56 
TCGA-BH-A0DT TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0GY TCGA-BH-A0GZ 
       38.47        15.68         9.63        44.81        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0HQ TCGA-BH-A0HU 
       15.16        24.56        23.08        26.50        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
       51.32        27.25        50.79        42.35        44.81        23.05 
TCGA-BH-A18I TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A1EO TCGA-BH-A1EU TCGA-BH-A1EV 
       35.93        66.05         7.36        91.99        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB 
       55.69        49.58        25.81        31.53        89.16       120.62 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FG TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A201 
      114.15        33.17       122.89        45.63        72.07        28.14 
TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A42T TCGA-BH-A42V TCGA-BH-A6R8 
       26.14        83.31       130.16        10.52        20.88         9.63 
TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A132 TCGA-C8-A1HG 
       11.77        12.66        12.66        12.66         1.87        11.34 
TCGA-C8-A1HI TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26X TCGA-C8-A26Z 
       11.28        12.33        12.95        12.33        12.36         8.28 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HR TCGA-C8-A9FZ 
        9.50        24.56        14.43        12.95        13.41        19.46 
TCGA-D8-A13Y TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1JC TCGA-D8-A1JF 
       56.81        20.58        14.17        19.20        15.78        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JT 
       14.01        18.97        20.12        20.09        19.40        13.32 
TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1XB TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XK 
       14.70        17.79        18.15        17.16        15.22        14.50 
TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27I 
       16.64        16.54         9.93        14.24        14.14        14.43 
TCGA-D8-A27M TCGA-D8-A27R TCGA-D8-A27V TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A 
       13.48        10.09        12.53        34.42        46.59        40.41 
TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14U 
       40.11        47.15        44.68        40.96        33.17        43.33 
TCGA-E2-A14X TCGA-E2-A154 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       31.96        19.43        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15M TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1AZ 
       20.71        21.63        11.05        56.94        14.07        76.57 
TCGA-E2-A1B0 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1II 
       53.62        28.50        37.25        77.65        70.36        33.70 
TCGA-E2-A1IN TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A56Z 
       22.19        50.07       102.61         8.75        26.99         8.28 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N6 
       34.92        38.76        34.29        17.69        36.82        22.29 
TCGA-E9-A1N9 TCGA-E9-A1NE TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R6 TCGA-E9-A1RA 
       36.20        35.77        34.95         2.56        11.15        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A243 TCGA-E9-A247 
       32.09        40.24        46.65         6.58        20.12        38.99 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
       12.33        29.72         9.47        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UP TCGA-EW-A1IY TCGA-EW-A1J1 TCGA-EW-A1J6 
       23.84        26.70        26.40         8.48        18.90        28.77 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 
       29.85        40.41        41.13        52.96        23.11        18.48 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A6SA TCGA-EW-A6SB 
        7.86        18.90        19.99         6.15        16.77        24.99 
TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DC TCGA-GM-A2DD 
       33.21         7.40       109.87        59.57        83.34        75.02 
TCGA-GM-A2DF TCGA-GM-A3NW TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LD-A7W6 
       70.85       110.50         2.60        11.57         7.10        13.28 
TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 
       15.32        14.79        15.68        14.50        19.53        12.36 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A66I 
       19.59        17.49        58.52        31.99        58.62        23.47 
TCGA-OL-A66J TCGA-OL-A66N TCGA-OL-A6VO TCGA-OL-A6VR TCGA-S3-A6ZF TCGA-S3-A6ZG 
       65.62        26.04        28.21        40.11        18.81        18.48 
TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 
       21.07        19.27        66.84        11.41        52.96        15.35 

$`AMP PEAK 11(8P11.21) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
       42.81        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SD TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN 
       14.37        48.10        47.24        20.88         7.96        39.32 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U 
       19.20        18.21        18.02        78.41       121.94        87.25 
TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO 
      101.98        55.43        36.13       136.73        99.12       114.81 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CW TCGA-A2-A0EM TCGA-A2-A0EN 
       88.60       107.93        77.19       107.93       101.72        89.36 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EW TCGA-A2-A0EY TCGA-A2-A0ST 
      118.45        79.76        35.05        61.94        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 
       54.64        27.12        50.43        44.28        17.52        17.13 
TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       20.52        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G6 
       49.48        19.33        48.46        17.36        22.45        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A25F 
       52.47       107.70        42.44        17.19       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY 
       36.23        39.65        33.93        32.75        56.28        35.93 
TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4S0 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       50.37         7.30        23.21        35.31        34.29        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13G TCGA-A7-A13H 
       37.45        35.67        33.11        31.73        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 
       31.36        23.74        22.32        11.34        10.59        11.28 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF 
       13.41        14.70        14.93        13.74        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06R 
       14.73        11.05        10.29         9.37         8.75        17.98 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 
       53.06        29.03        31.00         1.02        17.03         9.01 
TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z 
       19.99        18.97        12.00         7.99        24.99        45.07 
TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08I TCGA-A8-A08J 
       15.06        36.95         0.99        38.01        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A095 
        9.99        31.00        31.00       112.08        43.00        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q 
       12.00         9.99        50.04        29.98         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A4 
        8.98        19.04        15.02         0.99        12.00        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2B8 
       21.04         0.99        38.04         0.95         5.72         1.48 
TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO 
       73.05        40.57        90.71        60.92        87.12        74.14 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD 
       33.04        19.33        14.66        32.45        16.31        14.83 
TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 
       24.13        25.05        14.99        16.57        19.79        15.48 
TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62Y 
       24.79        29.26        16.80        19.33        14.96        17.42 
TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR 
       18.67        12.26         8.22        20.19         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        2.30         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         7.46         0.16         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         6.44         5.65         7.96         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR 
        6.90         7.04         0.33         5.36         0.30         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         0.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J5 
       95.70        47.87        58.95        29.13        52.18        26.04 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF 
       22.36        53.03        50.70        50.86        76.77        65.10 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A129 
       26.24        50.24        62.04       115.27        99.25       108.03 
TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       90.58        64.04        57.30        48.36        41.62        40.57 
TCGA-AO-A1KO TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A7U7 
       14.73        17.79        26.93         5.65        15.62        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TY 
      140.55        98.33         5.26       109.02        75.22        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A1AK TCGA-AR-A1AL 
      107.24        65.36       133.22        83.87       103.86        97.68 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AV 
       98.33        96.00        86.07        93.90        37.81        61.28 
TCGA-AR-A1AW TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       86.53        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
        2.76       104.28        97.84       105.27        77.69       105.30 
TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       98.76        89.00        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A5QM 
      166.42        86.53        63.62        38.17        40.54        73.35 
TCGA-AR-A5QN TCGA-B6-A0I9 TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IK 
       33.30        12.13        50.70        65.72       146.50        18.77 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RH TCGA-B6-A0RI 
       84.59       165.76       129.07       140.88       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0WV 
      263.28       162.05       140.48       100.70        89.46        79.63 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X7 TCGA-B6-A1KI 
      113.79       206.86       129.70        28.27        58.88        73.51 
TCGA-B6-A3ZX TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       37.87       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 
       63.09        81.44        39.55        39.16        70.22        81.63 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       84.13        51.68        32.02        43.53        61.51        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       74.89        61.68        72.23        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       53.95        77.95        89.06        90.97        45.83        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DQ 
       23.44        38.01        29.98        13.91        17.26         3.22 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E9 
       67.86        70.88        16.27         4.41        14.30        46.19 
TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0H3 TCGA-BH-A0H5 
       32.58        24.49        31.00        24.43        37.78        53.26 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       41.00        52.96        20.38         5.85         2.50        13.61 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J 
        5.59        23.93        24.95        32.91         4.90        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET 
       37.55        51.39        51.16        67.50       113.82        82.85 
TCGA-BH-A1EY TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FE TCGA-BH-A1FH TCGA-BH-A1FJ 
       17.69        97.48        24.62        74.73        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A28O 
       55.00       144.59        72.07        38.60        57.83        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R9 
        6.44        20.12       109.28        18.64        23.51         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N 
        9.70        18.87        21.76         9.44        11.93        11.77 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Y TCGA-C8-A12Z 
       11.77        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
        3.16        13.51        12.59        12.92         4.11         4.08 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A26V 
       12.33        10.92         0.16        12.03        10.42        20.25 
TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A3M7 
       12.53        12.95         9.67         9.53         0.03        33.99 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A145 
       13.02        12.49        20.88        13.25        13.97        13.48 
TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD 
       21.14        14.17        17.49        16.50        55.50        18.15 
TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       18.90        53.00        20.09        20.38        21.01        12.20 
TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC 
       18.58        16.73        25.74        23.90        27.58        12.39 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       14.73        21.80        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ 
       15.85        16.31        12.99        15.16        43.04        15.32 
TCGA-D8-A1Y0 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27K 
       15.52        17.42        16.04        13.45        13.05        48.03 
TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27W TCGA-D8-A3Z5 
       16.41         4.80         1.61        13.08        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       18.51        21.67        16.18        12.66        25.22        43.00 
TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14Q TCGA-E2-A14R 
       27.52        37.51        28.44        28.87        38.24        38.60 
TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       75.98        34.26        32.02        69.34        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15G 
       69.96        23.24        21.04        23.87        14.79        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O 
       12.92        55.63        53.92         9.04        20.58        50.79 
TCGA-E2-A15P TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1BC 
       19.56        51.39        87.22        33.01        32.35        16.47 
TCGA-E2-A1IF TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO 
       37.41        33.73        28.44        59.18         3.88        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA 
       11.08        54.18        60.36        73.64        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX 
       75.81        28.90       106.75        43.04        34.55        43.56 
TCGA-E2-A570 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC 
       30.61        34.82        32.88        34.16        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       41.62        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RD TCGA-E9-A1RG 
       28.27         6.12         3.02        48.23         1.12        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A3HO TCGA-E9-A3Q9 
        0.69         1.94         7.13        24.56        38.07        32.91 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ 
        0.79        25.81        27.85        12.20        39.72        18.21 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       13.25        16.57        15.68        25.94        22.82        29.95 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P7 TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF 
       39.78        29.82        30.08        13.94        10.52        14.43 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SC 
       34.03        17.49        10.16        23.51        15.22        31.30 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
      216.76        79.10        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62        85.35        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW 
       66.38        72.03        13.55        18.12        62.47        11.84 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
       21.24        13.22        10.62        24.95        32.75        29.23 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ 
       25.05        17.06        14.70        14.47        22.26         2.63 
TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       16.08         7.46        27.91        22.39         2.10        36.30 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       40.08        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P 
       20.38        26.70        41.92        42.77        17.36        14.07 
TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX 
       19.73         8.91        47.01        64.21        86.96         0.16 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
        0.26         9.93        20.68        13.84        18.87        17.39 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB44 TCGA-XX-A89A 
       17.26        13.94        17.03         3.81        29.03        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                          0.03                           0.03 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                        282.90                         263.28 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                        26.270                         28.885 
[1] "0.0 - 282.9 (26.3)" "0.0 - 263.3 (28.9)"
[1] "hr=" "1"  
D11V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 11(8P11.21) MUTATED        30       32        4        3       144
  AMP PEAK 11(8P11.21) WILD-TYPE      59       53        2        3       209
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 11(8P11.21) MUTATED          90         2         59         13
  AMP PEAK 11(8P11.21) WILD-TYPE       162         0         95         16
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 11(8P11.21) MUTATED           30        5         0       7
  AMP PEAK 11(8P11.21) WILD-TYPE         35       15         1       6
D11V3, multiclass
            clus
vv           AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  STAGE I                              30                             59
  STAGE IA                             32                             53
  STAGE IB                              4                              2
  STAGE II                              3                              3
  STAGE IIA                           144                            209
  STAGE IIB                            90                            162
  STAGE III                             2                              0
  STAGE IIIA                           59                             95
  STAGE IIIB                           13                             16
  STAGE IIIC                           30                             35
  STAGE IV                              5                             15
  STAGE TIS                             0                              1
  STAGE X                               7                              6
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 11(8P11.21) MUTATED   106 248  50  14
  AMP PEAK 11(8P11.21) WILD-TYPE 170 376  86  26
D11V4, multiclass
    clus
vv   AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  T1                          106                            170
  T2                          248                            376
  T3                           50                             86
  T4                           14                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 11(8P11.21) MUTATED   197 133  48  34
  AMP PEAK 11(8P11.21) WILD-TYPE 310 225  71  43
D11V5, multiclass
    clus
vv   AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  N0                          197                            310
  N1                          133                            225
  N2                           48                             71
  N3                           34                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V6, binary
                                cls
clus                               0   1
  AMP PEAK 11(8P11.21) MUTATED   356   6
  AMP PEAK 11(8P11.21) WILD-TYPE 533  16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8P11.21) MUTATED    356    6
  AMP PEAK 11(8P11.21) WILD-TYPE  533   16
   clus
vv  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  0                          356                            533
  1                            6                             16
[1] 2 2
[1] FALSE
D11V7, binary
                                cls
clus                               0   1
  AMP PEAK 11(8P11.21) MUTATED   417   4
  AMP PEAK 11(8P11.21) WILD-TYPE 651   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8P11.21) MUTATED    417    4
  AMP PEAK 11(8P11.21) WILD-TYPE  651    8
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  FEMALE                          417                            651
  MALE                              4                              8
[1] 2 2
[1] FALSE
D11V8, binary
                                cls
clus                               0   1
  AMP PEAK 11(8P11.21) MUTATED   156 210
  AMP PEAK 11(8P11.21) WILD-TYPE 273 308
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8P11.21) MUTATED    156  210
  AMP PEAK 11(8P11.21) WILD-TYPE  273  308
     clus
vv    AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  NO                           156                            273
  YES                          210                            308
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 11(8P11.21) MUTATED                            1
  AMP PEAK 11(8P11.21) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 11(8P11.21) MUTATED                             322
  AMP PEAK 11(8P11.21) WILD-TYPE                           448
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 11(8P11.21) MUTATED                               55
  AMP PEAK 11(8P11.21) WILD-TYPE                            145
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 11(8P11.21) MUTATED                     5                     4
  AMP PEAK 11(8P11.21) WILD-TYPE                   1                     5
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 11(8P11.21) MUTATED                                 10
  AMP PEAK 11(8P11.21) WILD-TYPE                               19
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 11(8P11.21) MUTATED                    4             19
  AMP PEAK 11(8P11.21) WILD-TYPE                 13             28
D11V9, multiclass
                                  clus
vv                                 AMP PEAK 11(8P11.21) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             322
  INFILTRATING LOBULAR CARCINOMA                             55
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       4
  MIXED HISTOLOGY (PLEASE SPECIFY)                           10
  MUCINOUS CARCINOMA                                          4
  OTHER  SPECIFY                                             19
                                  clus
vv                                 AMP PEAK 11(8P11.21) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               448
  INFILTRATING LOBULAR CARCINOMA                              145
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         5
  MIXED HISTOLOGY (PLEASE SPECIFY)                             19
  MUCINOUS CARCINOMA                                           13
  OTHER  SPECIFY                                               28
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 11(8P11.21) MUTATED                                  0    24
  AMP PEAK 11(8P11.21) WILD-TYPE                                1    36
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 11(8P11.21) MUTATED                          82   274
  AMP PEAK 11(8P11.21) WILD-TYPE                        99   471
D11V11, multiclass
                                  clus
vv                                 AMP PEAK 11(8P11.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      24
  BLACK OR AFRICAN AMERICAN                                  82
  WHITE                                                     274
                                  clus
vv                                 AMP PEAK 11(8P11.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        36
  BLACK OR AFRICAN AMERICAN                                    99
  WHITE                                                       471
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V12, binary
                                cls
clus                               0   1
  AMP PEAK 11(8P11.21) MUTATED    13 341
  AMP PEAK 11(8P11.21) WILD-TYPE  26 534
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8P11.21) MUTATED     13  341
  AMP PEAK 11(8P11.21) WILD-TYPE   26  534
                        clus
vv                       AMP PEAK 11(8P11.21) MUTATED
  HISPANIC OR LATINO                               13
  NOT HISPANIC OR LATINO                          341
                        clus
vv                       AMP PEAK 11(8P11.21) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            534
[1] 2 2
[1] FALSE

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
D12V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 12(8Q24.21) MUTATED   566 102
  AMP PEAK 12(8Q24.21) WILD-TYPE 351  45
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           668                            396 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           102                             45 
$`AMP PEAK 12(8Q24.21) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SD 
      129.14       131.67        42.81        11.44         9.96        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SK 
       43.43        48.10        14.27        47.24        13.68        31.79 
TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R 
       39.32        19.20       143.15        18.02        78.41       121.94 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CM 
       73.84        87.25        63.12        36.13        99.12        24.79 
TCGA-A2-A0CP TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       92.48        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EO 
       67.33        34.55        33.76        61.58        25.22        80.28 
TCGA-A2-A0EQ TCGA-A2-A0EU TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0SV TCGA-A2-A0SW 
       79.76        34.29        24.72        63.29        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 
       50.43        17.52        17.13         8.38        49.84        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YM 
       18.90        20.75        21.90        21.67        18.61        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.77        23.47        17.36        60.72        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3KD 
       19.56        52.47        42.44        18.15       105.34        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 
       33.93        91.07        29.98        47.31        35.93        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD 
        7.30        24.39        26.96        21.14        21.90        38.30 
TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D 
       35.31        30.61        37.45        35.67        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       20.19        25.15        24.26        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3J0 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SD 
       20.61        22.32        10.29        11.97        14.93        14.50 
TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A6VV TCGA-A7-A6VX 
       21.17        17.92        12.10        10.72        10.29        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
        8.75        13.02        13.02         1.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       29.03        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        19.99        18.97        18.97        14.01 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G 
       36.95        13.02        38.01        28.96        33.01        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S 
       12.00        37.05         9.99        31.00         0.99        33.01 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 
      112.08        43.00        33.01        30.97        17.95        12.00 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I 
        9.99        12.00         1.02        50.04        49.05        45.07 
TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       29.98        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
        0.99        14.01        19.04         0.99        27.02        17.03 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72         1.48        73.05        99.35 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3EH TCGA-AC-A3QP 
       26.04        74.14        33.04        14.66         6.48        22.19 
TCGA-AC-A3W5 TCGA-AC-A3YI TCGA-AC-A5EI TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X 
       16.57        23.24        14.53        14.96        11.44        13.71 
TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ 
       13.58         1.68         8.22         0.03        20.19         1.12 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.33         0.23         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         7.46         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FW 
        0.33         7.96         7.00         7.59         7.04         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.33         5.36         0.33        12.33 
TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P 
        0.33         0.33         5.33        61.35        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J7 
       68.75        47.87        29.13        21.40        52.18        20.32 
TCGA-AO-A0JB TCGA-AO-A0JE TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       50.70        76.77        50.24        55.33        71.80       115.27 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      106.78       108.03        98.27        64.04        57.30        48.36 
TCGA-AO-A12G TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT 
       41.62        82.62        61.87        70.39         0.53        17.79 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       24.79        26.93       130.09         5.65        15.62        32.52 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TS TCGA-AR-A0TT 
        2.56        32.91       140.55        98.33        84.10       109.02 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       75.22        98.93        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AN 
      134.14       107.21       108.36       101.00       103.86        96.00 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       93.90        99.32        94.29        86.53        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24N TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
      160.90        50.89        99.78       104.28       112.77        97.84 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
       77.69       105.30        32.58        98.66        89.00        99.62 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LH TCGA-AR-A2LK TCGA-AR-A2LL 
       85.64        71.05        93.83        20.25        54.21        66.15 
TCGA-AR-A2LO TCGA-AR-A2LR TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        57.27        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IG 
      143.38       281.29       275.87       129.57        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IQ 
      112.37       233.62        18.77       127.33        84.59       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RM TCGA-B6-A0RP TCGA-B6-A0RS 
      255.68        68.45       212.25        78.02       102.77       100.70 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WW TCGA-B6-A0WX 
       89.46       282.90       157.41        97.48        18.35        21.47 
TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      113.79       245.10        68.94        58.88        43.59       101.52 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        70.16 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       68.12        18.84        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B7 
       25.55        40.83        39.55        39.16        81.63        84.13 
TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP 
       37.22        18.21        43.53        61.51        74.89        75.48 
TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DD 
       45.57        77.95        49.05        41.75        44.02        45.83 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       38.01        29.98        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 
       38.47        16.27         4.41        15.68        14.30        44.81 
TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H6 TCGA-BH-A0H7 
       31.00        30.35        10.78        15.16        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
       41.00        26.50        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18I 
       50.79         5.59        42.35        44.81        23.05        35.93 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18T 
       26.66        72.56        37.74        55.63        37.55         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1EU 
       51.39        51.16        67.50        91.99       113.82        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F5 
       12.00        55.69        49.58        17.69        31.53        89.16 
TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48       120.62       114.15        33.17        74.73       122.89 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       45.63        72.07        72.07        26.14        38.60        83.31 
TCGA-BH-A209 TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FZ 
      130.16        20.88        18.64        23.51         9.63        18.87 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12U 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        12.66        12.56         3.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HG 
        1.87        12.59        12.92         4.11         4.08        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
       11.28         0.16        12.03        12.33        12.95        12.33 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 
       12.53        12.36         8.28         9.67         0.03         9.50 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A141 TCGA-D8-A142 
       24.56        14.43        13.41        56.81        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JF 
       14.17        19.20        17.49        15.78        18.15        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       53.00        14.01        20.09        20.12        20.09        19.40 
TCGA-D8-A1JP TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X9 
       21.01        13.32        14.70        18.58        17.79        23.90 
TCGA-D8-A1XB TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       18.15        17.16        15.22        21.80        14.50        19.92 
TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.41        16.31        12.99        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27H 
       15.52         9.93        14.24        14.14        16.04        13.05 
TCGA-D8-A27I TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27V 
       14.43        16.41        13.48         4.80        10.09        12.53 
TCGA-D8-A27W TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       12.26        18.51        21.67        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R 
       46.59        40.11        47.15        44.68        40.96        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        75.98        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       69.34        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       14.79        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15S 
       21.63        12.92        53.92        11.05        50.79        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD 
       51.39        76.57        53.62        32.35        28.50        37.25 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1LA 
       33.73        33.70        22.19        60.99        60.36        24.59 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 
       28.90        50.07       106.75       102.61         8.75        26.99 
TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 
        8.28        34.92        38.76        34.29        17.69        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NE 
       22.29        34.16        36.20        36.56        39.55        35.77 
TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R6 
       35.24         9.86        34.95         2.56         6.12        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RG 
       48.23        45.01        32.09        40.24        46.65        21.27 
TCGA-E9-A1RH TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       46.59        39.09        38.37        41.03        41.72        40.73 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A295 TCGA-E9-A2JS 
       20.12         0.69        38.99         1.94        12.33        29.72 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A5UP TCGA-EW-A1IY TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OY 
       26.40         8.48        18.90        28.77        22.82        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       40.41        41.13        39.78        52.96        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PF 
       18.48         7.86        19.99         6.15        13.94        14.43 
TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SD 
       19.96        25.91        17.49        16.77        24.99        33.21 
TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF 
      109.87       216.76        79.10        83.34        75.02        70.85 
TCGA-GM-A2DO TCGA-GM-A3XL TCGA-GM-A5PV TCGA-HN-A2NL TCGA-JL-A3YW TCGA-JL-A3YX 
       85.35        69.30        13.55         2.60        11.84        11.57 
TCGA-LD-A7W5 TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP 
        7.10        32.75        15.32        14.70        14.47        14.79 
TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 
       16.08        15.68         7.46        14.50        19.53        12.36 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RW 
       19.59        17.49        58.52        31.99        58.62        36.36 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VO 
       22.32        20.38        23.47        26.04        14.07        28.21 
TCGA-OL-A6VR TCGA-PE-A5DC TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH 
       40.11        47.01         9.93        18.81        18.48        21.07 
TCGA-S3-AA10 TCGA-S3-AA12 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G 
       19.27        18.87        17.03         3.81        66.84        11.41 
TCGA-XX-A899 TCGA-Z7-A8R6 
       15.35       107.05 

$`AMP PEAK 12(8Q24.21) WILD-TYPE`
TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SI TCGA-A1-A0SM 
       40.14        48.56        48.36         8.52        20.88         7.96 
TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CO 
       28.01        18.21       101.98        55.43       136.73       114.81 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP 
       88.60       107.93        77.19       101.72        89.36       118.45 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0ST 
       74.40        72.00        35.05        31.82        61.94        99.19 
TCGA-A2-A0SU TCGA-A2-A0SY TCGA-A2-A0T4 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       54.64        44.28        20.52        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FZ TCGA-A2-A1G6 
       50.47        49.48        19.33        48.46        22.45        16.47 
TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XV TCGA-A2-A3XW 
      107.70        17.19        10.59        36.23        32.75        56.28 
TCGA-A2-A3XZ TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0DB 
       50.37        21.30        23.21        34.29        35.47        33.11 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 
       23.61        29.56        31.36        11.34        10.59        11.28 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SB TCGA-A7-A56D TCGA-A7-A5ZX TCGA-A7-A6VW 
       13.41        14.70        13.74        14.73        11.05         9.37 
TCGA-A8-A07J TCGA-A8-A07S TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A08A TCGA-A8-A08O 
       12.00         7.99        45.07        15.06         0.99        31.00 
TCGA-A8-A08Z TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09V TCGA-A8-A0A1 TCGA-A8-A0A4 
       40.01        41.98         9.99        15.02        12.00        13.02 
TCGA-A8-A0A6 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       21.04        38.04         0.95        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD 
       60.92        87.12        19.33        32.45        16.31        14.83 
TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YJ 
       24.13        25.05        14.99        19.79        15.48        24.79 
TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5XS TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX 
       29.26        16.80        19.33        17.42        18.67        12.26 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        1.32         2.30         0.33         0.33         6.44         5.65 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT 
        7.17         6.90         0.33         0.30         0.33         0.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J5 
        5.59        80.28        66.77        58.95        32.78        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JD 
       37.48        22.36        53.03        21.53        50.86        72.00 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A12A 
       65.10        26.24        62.04        99.25       108.72        90.58 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AQ-A7U7 TCGA-AR-A0TR TCGA-AR-A0TX TCGA-AR-A0TZ 
       40.57        14.73        19.20         5.26        64.83       107.24 
TCGA-AR-A1AH TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AR TCGA-AR-A1AS 
      125.16        97.68        98.33        86.07        17.23        37.81 
TCGA-AR-A1AV TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24T 
       61.28        94.22       120.33       118.59         2.76       105.27 
TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN 
       98.76        93.30       166.42        86.53        63.62        38.17 
TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-B6-A0I9 TCGA-B6-A0IC TCGA-B6-A0IO TCGA-B6-A0IP 
       40.54        73.35        12.13        50.70       165.76       129.07 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0WT 
      234.28        81.17       263.28       162.05       140.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A1KI TCGA-B6-A40B 
       79.63       206.86       129.70        28.27        73.51       103.63 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BJ 
       63.09        81.44        70.22        51.68        32.02        21.70 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV 
       61.68        72.23        74.14        76.60        53.95        49.94 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DK TCGA-BH-A0DO 
       89.06        90.97        77.98        23.44        13.91        17.26 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       67.86        70.88         9.63        46.19        32.58        24.49 
TCGA-BH-A0EI TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK 
       24.43        37.78        53.26        52.96        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A18F TCGA-BH-A18G 
        2.50        13.61        23.93        24.95        32.91         4.90 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18P TCGA-BH-A18S TCGA-BH-A1ET TCGA-BH-A1F0 
       20.12        90.84        30.28        66.05        82.85        25.81 
TCGA-BH-A1F8 TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A201 
       24.62        36.92        63.35        55.00       144.59        28.14 
TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       57.83        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12Q TCGA-C8-A12Y 
        5.26         9.70        21.76         9.44        12.66        48.53 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HL TCGA-C8-A26V TCGA-C8-A26Y TCGA-C8-A274 
       12.33        10.92        10.42        20.25        12.95         9.53 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Z 
       33.99        12.95        13.02        12.49        19.46        20.88 
TCGA-D8-A140 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.25        13.48        21.14        14.17        16.50        55.50 
TCGA-D8-A1JE TCGA-D8-A1JI TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1X7 TCGA-D8-A1X8 
       18.90        18.97        20.38        12.20        16.73        25.74 
TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XG TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR 
       27.58        12.39        14.73        17.69        55.30        15.85 
TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27K TCGA-D8-A27P 
       16.64        15.16        17.42        13.45        48.03         1.61 
TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A10A 
       13.08        33.37        16.18        12.66        25.22        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14Q TCGA-E2-A155 TCGA-E2-A156 
       37.51        28.44        28.87        38.24        21.04        23.87 
TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15P TCGA-E2-A15R 
       18.21        55.63         9.04        20.58        19.56        56.94 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       87.22        33.01        16.47        77.65        37.41        70.36 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 
       28.44        59.18         3.88        11.08        54.18        73.64 
TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 
       19.66        75.81        43.04        34.55        43.56        30.61 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1ND TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1QZ 
       34.82        32.88        41.62        25.84        18.94        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R5 TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A226 
       28.27         3.02         1.12         6.58        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22H TCGA-E9-A249 TCGA-E9-A24A 
       32.05        42.25        37.74        40.50         7.13        24.56 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW 
        9.47        38.07        32.91        25.81        27.85        12.20 
TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV 
       39.72        18.21        13.25        16.57        15.68        25.94 
TCGA-EW-A1OX TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A2FR 
       29.95        30.08        18.90        10.52        34.55        55.00 
TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 
       52.73        22.09        34.03        10.16        23.51        15.22 
TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       31.30         7.40        59.57        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62       110.50        38.20        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PX TCGA-HN-A2OB TCGA-LD-A66U TCGA-LD-A74U 
       66.38        72.03        18.12        62.47        21.24        13.22 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       13.28        10.62        24.95        29.23        25.05        17.06 
TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       22.26         2.63        27.91        22.39         2.10        36.30 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66J 
       40.08        34.92        28.87        24.72        26.70        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PE-A5DD 
       41.92        42.77        17.36        19.73         8.91        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA14 
       86.96         0.16         0.26        20.68        13.84        17.39 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R5 
       17.26        13.94        52.96        29.03        16.04       108.07 

  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                          0.03                           0.16 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                        282.90                         263.28 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                        26.945                         28.440 
[1] "0.0 - 282.9 (26.9)" "0.2 - 263.3 (28.4)"
[1] "hr=" "1.3"
D12V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 12(8Q24.21) MUTATED        50       46        3        3       233
  AMP PEAK 12(8Q24.21) WILD-TYPE      39       39        3        3       120
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 12(8Q24.21) MUTATED         153         2        100         20
  AMP PEAK 12(8Q24.21) WILD-TYPE        99         0         54          9
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 12(8Q24.21) MUTATED           41       12         1      11
  AMP PEAK 12(8Q24.21) WILD-TYPE         24        8         0       2
D12V3, multiclass
            clus
vv           AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  STAGE I                              50                             39
  STAGE IA                             46                             39
  STAGE IB                              3                              3
  STAGE II                              3                              3
  STAGE IIA                           233                            120
  STAGE IIB                           153                             99
  STAGE III                             2                              0
  STAGE IIIA                          100                             54
  STAGE IIIB                           20                              9
  STAGE IIIC                           41                             24
  STAGE IV                             12                              8
  STAGE TIS                             1                              0
  STAGE X                              11                              2
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 12(8Q24.21) MUTATED   158 412  79  25
  AMP PEAK 12(8Q24.21) WILD-TYPE 118 212  57  15
D12V4, multiclass
    clus
vv   AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  T1                          158                            118
  T2                          412                            212
  T3                           79                             57
  T4                           25                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 12(8Q24.21) MUTATED   318 213  83  49
  AMP PEAK 12(8Q24.21) WILD-TYPE 189 145  36  28
D12V5, multiclass
    clus
vv   AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  N0                          318                            189
  N1                          213                            145
  N2                           83                             36
  N3                           49                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V6, binary
                                cls
clus                               0   1
  AMP PEAK 12(8Q24.21) MUTATED   576  13
  AMP PEAK 12(8Q24.21) WILD-TYPE 313   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(8Q24.21) MUTATED    576   13
  AMP PEAK 12(8Q24.21) WILD-TYPE  313    9
   clus
vv  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  0                          576                            313
  1                           13                              9
[1] 2 2
[1] FALSE
D12V7, binary
                                cls
clus                               0   1
  AMP PEAK 12(8Q24.21) MUTATED   668  10
  AMP PEAK 12(8Q24.21) WILD-TYPE 400   2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(8Q24.21) MUTATED    668   10
  AMP PEAK 12(8Q24.21) WILD-TYPE  400    2
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  FEMALE                          668                            400
  MALE                             10                              2
[1] 2 2
[1] FALSE
D12V8, binary
                                cls
clus                               0   1
  AMP PEAK 12(8Q24.21) MUTATED   261 328
  AMP PEAK 12(8Q24.21) WILD-TYPE 168 190
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(8Q24.21) MUTATED    261  328
  AMP PEAK 12(8Q24.21) WILD-TYPE  168  190
     clus
vv    AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  NO                           261                            168
  YES                          328                            190
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 12(8Q24.21) MUTATED                            1
  AMP PEAK 12(8Q24.21) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 12(8Q24.21) MUTATED                             546
  AMP PEAK 12(8Q24.21) WILD-TYPE                           224
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 12(8Q24.21) MUTATED                               70
  AMP PEAK 12(8Q24.21) WILD-TYPE                            130
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 12(8Q24.21) MUTATED                     6                     7
  AMP PEAK 12(8Q24.21) WILD-TYPE                   0                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 12(8Q24.21) MUTATED                                 17
  AMP PEAK 12(8Q24.21) WILD-TYPE                               12
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 12(8Q24.21) MUTATED                    5             25
  AMP PEAK 12(8Q24.21) WILD-TYPE                 12             22
D12V9, multiclass
                                  clus
vv                                 AMP PEAK 12(8Q24.21) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             546
  INFILTRATING LOBULAR CARCINOMA                             70
  MEDULLARY CARCINOMA                                         6
  METAPLASTIC CARCINOMA                                       7
  MIXED HISTOLOGY (PLEASE SPECIFY)                           17
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             25
                                  clus
vv                                 AMP PEAK 12(8Q24.21) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               224
  INFILTRATING LOBULAR CARCINOMA                              130
  MEDULLARY CARCINOMA                                           0
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             12
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 12(8Q24.21) MUTATED                                  1    41
  AMP PEAK 12(8Q24.21) WILD-TYPE                                0    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 12(8Q24.21) MUTATED                         131   435
  AMP PEAK 12(8Q24.21) WILD-TYPE                        50   310
D12V11, multiclass
                                  clus
vv                                 AMP PEAK 12(8Q24.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      41
  BLACK OR AFRICAN AMERICAN                                 131
  WHITE                                                     435
                                  clus
vv                                 AMP PEAK 12(8Q24.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    50
  WHITE                                                       310
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V12, binary
                                cls
clus                               0   1
  AMP PEAK 12(8Q24.21) MUTATED    20 541
  AMP PEAK 12(8Q24.21) WILD-TYPE  19 334
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(8Q24.21) MUTATED     20  541
  AMP PEAK 12(8Q24.21) WILD-TYPE   19  334
                        clus
vv                       AMP PEAK 12(8Q24.21) MUTATED
  HISPANIC OR LATINO                               20
  NOT HISPANIC OR LATINO                          541
                        clus
vv                       AMP PEAK 12(8Q24.21) WILD-TYPE
  HISPANIC OR LATINO                                 19
  NOT HISPANIC OR LATINO                            334
[1] 2 2
[1] FALSE

Clustering(13) Variable = AMP PEAK 13(10P15.1) MUTATION ANALYSIS
D13V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 13(10P15.1) MUTATED   249  50
  AMP PEAK 13(10P15.1) WILD-TYPE 668  97
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           299                            765 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                            50                             97 
$`AMP PEAK 13(10P15.1) MUTATED`
TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SO 
        9.96        14.37        43.43        48.10        13.68        28.01 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CM TCGA-A2-A0D0 
       18.02        78.41        73.84        87.25        24.79        67.33 
TCGA-A2-A0D2 TCGA-A2-A0EQ TCGA-A2-A0EV TCGA-A2-A0ST TCGA-A2-A0SW TCGA-A2-A0SX 
       33.76        79.76        31.82        99.19        44.88        50.43 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YE 
       17.52        17.13         8.38        49.84        20.75        18.21 
TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A3XS 
       21.90        18.61        31.73        19.20        42.44        33.93 
TCGA-A2-A3XT TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A7-A0DA TCGA-A7-A13D 
       91.07        47.31        50.83         7.30        35.67        31.73 
TCGA-A7-A13E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A4SA TCGA-A7-A4SD 
       20.19        24.26        23.74        21.73        14.93        14.50 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       17.92        14.73        12.10        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06X 
        8.75        13.02         1.02        17.98        29.03        31.00 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07Z 
       43.00        19.99        18.97         8.98        24.99        45.07 
TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P 
       38.01        33.01        19.96        37.05         9.99        31.00 
TCGA-A8-A08R TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B 
        0.99        43.00        30.97        12.00         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09Q TCGA-A8-A09X TCGA-AC-A23C 
       50.04        49.05        45.07        25.02        14.01         0.95 
TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2FO TCGA-AC-A3EH TCGA-AC-A62V TCGA-AC-A62X 
       22.95        73.05        74.14         6.48        11.44        13.71 
TCGA-AC-A6IW TCGA-AC-A8OQ TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AR 
       13.58         1.12         1.78         1.71         7.46         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FL TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XU 
        0.33         0.33         7.59         0.33         0.33         0.33 
TCGA-AO-A03O TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J6 TCGA-AO-A0JL 
       81.63        29.13        32.78        21.40        37.48        55.33 
TCGA-AO-A124 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12F TCGA-AO-A1KR 
      115.27       106.78       108.03        90.58        48.36        70.39 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O 
        0.53        24.79       130.09         5.65         2.56        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0U2 TCGA-AR-A0U4 
       19.20        84.10       109.02        98.93        83.87       107.21 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AW 
      108.36       101.00       103.86        99.32        17.23        86.53 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24V 
       33.73       160.90        50.89        97.84        77.69       105.30 
TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LR 
       99.62        85.64        71.05        93.83        66.15        57.27 
TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IN TCGA-B6-A0IO 
      129.57        65.72       112.37       233.62        84.59       165.76 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0X1 
      140.88       255.68       162.05       100.70        89.46       245.10 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A402 TCGA-B6-A409 TCGA-BH-A0AW TCGA-BH-A0AY 
       43.59       101.52        70.16        18.84        20.45        25.55 
TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BW 
       39.55        81.63        61.51        74.89        75.48        77.95 
TCGA-BH-A0C0 TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0E7 
       41.75         2.56        38.47         4.41         9.63        44.81 
TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HU 
       32.58        31.00        30.35        23.08        41.00        12.89 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0WA TCGA-BH-A18L TCGA-BH-A18Q TCGA-BH-A18T 
       50.79         5.59        23.05        26.66        55.63         7.36 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1F0 TCGA-BH-A1F2 
       51.16        67.50        12.00        55.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A209 TCGA-C8-A12L TCGA-C8-A12O 
       97.48       114.15        33.17       130.16        11.93        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12W TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A1HJ 
       11.77        12.66        12.66         3.16        13.51         0.16 
TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A274 TCGA-C8-A27B TCGA-D8-A13Z TCGA-D8-A142 
       12.36         8.28         9.53        14.43        20.88        13.97 
TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JF TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1X5 
       55.50        18.15        12.03        20.12        20.09        18.58 
TCGA-D8-A1X9 TCGA-D8-A1XF TCGA-D8-A1XK TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XW 
       23.90        15.22        14.50        16.64        12.99        43.04 
TCGA-D8-A1XZ TCGA-D8-A27R TCGA-D8-A3Z6 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A14N 
       15.32        10.09        18.51        34.42        27.52        47.15 
TCGA-E2-A14O TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A154 
       44.68        38.60        34.26        63.62        69.96        19.43 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15G TCGA-E2-A15M TCGA-E2-A15S 
       14.79        25.05        23.34        18.21        11.05        14.07 
TCGA-E2-A1AZ TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A573 
       76.57       106.75       102.61         8.75        26.99        34.92 
TCGA-E2-A574 TCGA-E9-A1N9 TCGA-E9-A1NE TCGA-E9-A1RB TCGA-E9-A1RH TCGA-E9-A22B 
       38.76        36.20        35.77        32.09        46.59        38.37 
TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A3QA 
       41.03        40.73         0.69        38.99        12.33        30.18 
TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1OZ 
       26.40        28.77        25.94        22.82        29.85        40.41 
TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FV 
        7.86        19.99         6.15        19.96        52.73        25.91 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SD TCGA-GI-A2C9 
       17.49        10.16        16.77        24.99        33.21       109.87 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A3XL 
       79.10        83.34        70.85        72.10        86.96        69.30 
TCGA-JL-A3YW TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YO 
       11.84         7.10        10.62        32.75        15.32        14.47 
TCGA-LL-A6FQ TCGA-LL-A73Z TCGA-LL-A8F5 TCGA-MS-A51U TCGA-OL-A5D7 TCGA-OL-A5RW 
        2.63         7.46        19.59        22.39        58.52        36.36 
TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A6VO TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z 
       20.38        23.47        28.21         9.93        18.81        20.68 
TCGA-S3-AA10 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-Z7-A8R6 
       19.27        13.94        17.03         3.81       107.05 

$`AMP PEAK 13(10P15.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK 
       48.36         8.52        14.27        47.24        20.88        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04R 
        7.96        39.32        19.20        18.21       143.15       121.94 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      114.81        92.48        88.60       107.93        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D3 
        5.19        98.99       107.93        56.81        34.55        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       25.22       101.72        89.36        80.28       118.45        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        35.05        34.29        61.94        24.72        63.29 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SY TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       54.64        27.12        44.28        20.52        17.46        18.90 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK 
       32.55        25.28        50.47        21.67        49.48        19.33 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       48.46        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C 
       20.25        19.56        16.47        52.47       107.70        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU 
       18.15       105.34        10.59        36.23        39.65        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY 
       32.75        56.28        35.93        50.37        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE 
       23.21        26.96        21.14        21.90        38.30        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC 
       34.29        35.47        30.61        37.45        33.11        29.79 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26H TCGA-A7-A26J 
       25.15        23.61        29.56        31.36        23.80        20.61 
TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       22.32        11.34        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A5ZW TCGA-A7-A5ZX 
       14.70        11.97        13.74        21.17        10.72        11.05 
TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       13.02        53.06        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
        9.01        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 
       10.98         7.99         9.99        15.06        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08O TCGA-A8-A08S TCGA-A8-A08T 
        0.99        28.96        12.00        31.00        33.01       112.08 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09C 
       40.01        33.01        17.95        41.98         9.99         1.02 
TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       29.98        33.07         1.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
        0.99        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       27.02        17.03        38.04        73.91         5.72         1.48 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3HN 
       26.04        33.04        19.33        14.66        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 
       14.83        22.19        24.13        25.05        14.99        16.57 
TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH 
       19.79        15.48        23.24        24.79        29.26        16.80 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX 
       14.53        19.33        14.96        17.42        18.67        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS 
        1.68         8.22         0.03        20.19         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
        0.33         0.33         0.23         0.33         0.62         2.96 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        9.96         7.36         0.16         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        7.00         7.17         6.90         7.04         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.33         0.33         5.36        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J4 
       66.77        95.70        68.75        47.87        58.95        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       26.04        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI 
       50.86        72.00        76.77        65.10        26.24        50.24 
TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A12B TCGA-AO-A12D 
       62.04        71.80        99.25       108.72        98.27        64.04 
TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       57.30        41.62        40.57        14.73        82.62        61.87 
TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TP TCGA-AR-A0TQ 
       17.79        26.93        15.62        32.52       140.55        98.33 
TCGA-AR-A0TR TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
        5.26        75.22        64.83        55.86       107.24        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
      133.22       134.14       125.16        97.68        98.33        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX 
       86.07        93.90        37.81        94.29        61.28        86.43 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
      112.77       105.27        32.58        98.76        98.66        89.00 
TCGA-AR-A252 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       93.30       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP 
       38.17        39.39        40.54        73.35        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       10.59        77.62       143.38       281.29        12.13       275.87 
TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IP TCGA-B6-A0RG 
       50.70       146.50        18.77       127.33       129.07        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP 
      212.25       234.28        81.17        78.02       263.28       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
      140.48       282.90       157.41        97.48       188.68        79.63 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 
       18.35        21.47       113.79       206.86       129.70        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       68.94        58.88        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
        7.07        85.35        68.12       103.63        71.15        62.93 
TCGA-BH-A0AV TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 
       59.84        63.09        81.44        40.83        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       84.13        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       21.70        61.68        72.23        74.14        76.60        53.95 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       45.57        49.94        49.05        44.02        89.06        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       45.83        77.98        23.44        38.01        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DV TCGA-BH-A0DX 
       78.28        17.26        15.65         3.22        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EI 
       16.27        15.68        14.30        46.19        24.49        24.43 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HA 
       10.78        15.16        37.78        53.26        24.56        52.96 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       26.50        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       51.32        27.25        23.93        24.95        42.35        44.81 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M 
       32.91         4.90        35.93        20.12        90.84        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EO 
       37.74        30.28        37.55        66.05        51.39        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F5 
      113.82        82.85        42.28        49.58        17.69        89.16 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
       24.62       120.62        74.73       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07       144.59        72.07        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q 
       26.14        38.60        83.31        57.83        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       109.28        20.88        18.64        23.51 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
        9.63         5.26         9.70        18.87        21.76         9.44 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y 
       11.77        11.77        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       12.56         1.87        12.59        12.92         4.11         4.08 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL 
       12.33        10.92        11.34        11.28        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y 
       12.33        12.95        12.33        20.25        12.53        12.95 
TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 
        9.67         0.03         9.50        24.56        33.99        12.95 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 
       13.02        12.49        13.41        19.46        56.81        13.25 
TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        14.17        13.48        21.14        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JH 
       17.49        16.50        15.78        18.90        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       18.97        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XA 
       13.32        14.70        17.79        16.73        25.74        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL 
       18.15        12.39        17.16        14.73        21.80        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XV 
       17.69        55.30        16.41        15.85        16.31        15.16 
TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       16.54        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
       13.48         4.80         1.61        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       33.37        21.67        16.18        12.66        25.22        43.00 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       46.59        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W 
       40.96        38.24        33.17        75.98        43.33        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 
       31.96        69.34        18.51        23.24        21.04        23.87 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I 
       22.82        17.29        20.71        21.63        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        50.79        19.56        56.94 
TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       51.39        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       16.47        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA 
       11.08        54.18        60.36        73.64        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX 
       75.81        28.90        50.07        43.04        34.55        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        34.29        17.69        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       36.82        22.29        34.16        36.56        39.55        41.62 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.24        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       45.01        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       41.72        40.50        20.12         1.94         7.13        24.56 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X 
       29.72         9.47        38.07        32.91        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        27.85        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 
       15.68        29.95        41.13        39.78        52.96        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PE 
       23.11        18.48        30.08        18.90        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 
       14.43        34.55        55.00        22.09        34.03        23.51 
TCGA-EW-A6S9 TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DD 
       15.22        31.30         7.40        59.57       216.76        75.02 
TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       85.15       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 
        2.60        62.47        11.57        21.24        13.22        13.28 
TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YP 
       24.95        29.23        25.05        17.06        14.70        14.79 
TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 
       22.26        16.08        15.68        14.50        19.53        12.36 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA 
       17.49        27.91         2.10        36.30        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H 
       40.08        34.92        28.87        24.72        22.32        26.70 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P 
       65.62        41.92        42.77        26.04        17.36        14.07 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       19.73        40.11         8.91        47.01        64.21        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA12 
        0.16         0.26        18.48        21.07        13.84        18.87 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       17.39        17.26        66.84        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       15.35        16.04       108.07 

  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                        255.68                         282.90 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                         28.01                          27.85 
[1] "0.2 - 255.7 (28.0)" "0.0 - 282.9 (27.9)"
[1] "hr=" "1.3"
D13V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 13(10P15.1) MUTATED        26       16        1        2       115
  AMP PEAK 13(10P15.1) WILD-TYPE      63       69        5        4       238
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 13(10P15.1) MUTATED          59         0         42         10
  AMP PEAK 13(10P15.1) WILD-TYPE       193         2        112         19
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 13(10P15.1) MUTATED           19        7         1       4
  AMP PEAK 13(10P15.1) WILD-TYPE         46       13         0       9
D13V3, multiclass
            clus
vv           AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  STAGE I                              26                             63
  STAGE IA                             16                             69
  STAGE IB                              1                              5
  STAGE II                              2                              4
  STAGE IIA                           115                            238
  STAGE IIB                            59                            193
  STAGE III                             0                              2
  STAGE IIIA                           42                            112
  STAGE IIIB                           10                             19
  STAGE IIIC                           19                             46
  STAGE IV                              7                             13
  STAGE TIS                             1                              0
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 13(10P15.1) MUTATED    69 186  31  16
  AMP PEAK 13(10P15.1) WILD-TYPE 207 438 105  24
D13V4, multiclass
    clus
vv   AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  T1                           69                            207
  T2                          186                            438
  T3                           31                            105
  T4                           16                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 13(10P15.1) MUTATED   148  90  36  24
  AMP PEAK 13(10P15.1) WILD-TYPE 359 268  83  53
D13V5, multiclass
    clus
vv   AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  N0                          148                            359
  N1                           90                            268
  N2                           36                             83
  N3                           24                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V6, binary
                                cls
clus                               0   1
  AMP PEAK 13(10P15.1) MUTATED   257   8
  AMP PEAK 13(10P15.1) WILD-TYPE 632  14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(10P15.1) MUTATED    257    8
  AMP PEAK 13(10P15.1) WILD-TYPE  632   14
   clus
vv  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  0                          257                            632
  1                            8                             14
[1] 2 2
[1] FALSE
D13V7, binary
                                cls
clus                               0   1
  AMP PEAK 13(10P15.1) MUTATED   301   3
  AMP PEAK 13(10P15.1) WILD-TYPE 767   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(10P15.1) MUTATED    301    3
  AMP PEAK 13(10P15.1) WILD-TYPE  767    9
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  FEMALE                          301                            767
  MALE                              3                              9
[1] 2 2
[1] FALSE
D13V8, binary
                                cls
clus                               0   1
  AMP PEAK 13(10P15.1) MUTATED   116 149
  AMP PEAK 13(10P15.1) WILD-TYPE 313 369
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(10P15.1) MUTATED    116  149
  AMP PEAK 13(10P15.1) WILD-TYPE  313  369
     clus
vv    AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  NO                           116                            313
  YES                          149                            369
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 13(10P15.1) MUTATED                            1
  AMP PEAK 13(10P15.1) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 13(10P15.1) MUTATED                             262
  AMP PEAK 13(10P15.1) WILD-TYPE                           508
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 13(10P15.1) MUTATED                               20
  AMP PEAK 13(10P15.1) WILD-TYPE                            180
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 13(10P15.1) MUTATED                     5                     1
  AMP PEAK 13(10P15.1) WILD-TYPE                   1                     8
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 13(10P15.1) MUTATED                                  5
  AMP PEAK 13(10P15.1) WILD-TYPE                               24
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 13(10P15.1) MUTATED                    0              9
  AMP PEAK 13(10P15.1) WILD-TYPE                 17             38
D13V9, multiclass
                                  clus
vv                                 AMP PEAK 13(10P15.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             262
  INFILTRATING LOBULAR CARCINOMA                             20
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            5
  MUCINOUS CARCINOMA                                          0
  OTHER  SPECIFY                                              9
                                  clus
vv                                 AMP PEAK 13(10P15.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               508
  INFILTRATING LOBULAR CARCINOMA                              180
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         8
  MIXED HISTOLOGY (PLEASE SPECIFY)                             24
  MUCINOUS CARCINOMA                                           17
  OTHER  SPECIFY                                               38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 13(10P15.1) MUTATED                                  1    14
  AMP PEAK 13(10P15.1) WILD-TYPE                                0    46
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 13(10P15.1) MUTATED                          75   185
  AMP PEAK 13(10P15.1) WILD-TYPE                       106   560
D13V11, multiclass
                                  clus
vv                                 AMP PEAK 13(10P15.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      14
  BLACK OR AFRICAN AMERICAN                                  75
  WHITE                                                     185
                                  clus
vv                                 AMP PEAK 13(10P15.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        46
  BLACK OR AFRICAN AMERICAN                                   106
  WHITE                                                       560
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V12, binary
                                cls
clus                               0   1
  AMP PEAK 13(10P15.1) MUTATED     9 240
  AMP PEAK 13(10P15.1) WILD-TYPE  30 635
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(10P15.1) MUTATED      9  240
  AMP PEAK 13(10P15.1) WILD-TYPE   30  635
                        clus
vv                       AMP PEAK 13(10P15.1) MUTATED
  HISPANIC OR LATINO                                9
  NOT HISPANIC OR LATINO                          240
                        clus
vv                       AMP PEAK 13(10P15.1) WILD-TYPE
  HISPANIC OR LATINO                                 30
  NOT HISPANIC OR LATINO                            635
[1] 2 2
[1] FALSE

Clustering(14) Variable = AMP PEAK 14(10Q22.3) MUTATION ANALYSIS
D14V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 14(10Q22.3) MUTATED   120  27
  AMP PEAK 14(10Q22.3) WILD-TYPE 797 120
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           147                            917 
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                            27                            120 
$`AMP PEAK 14(10Q22.3) MUTATED`
TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SF TCGA-A2-A04Q TCGA-A2-A04W TCGA-A2-A0CL 
        9.96        14.37        48.10        78.41       101.98        99.12 
TCGA-A2-A0CM TCGA-A2-A0EQ TCGA-A2-A0SX TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T7 
       24.79        79.76        50.43        17.13         8.38        20.75 
TCGA-A2-A0YJ TCGA-A2-A1FW TCGA-A2-A25E TCGA-A7-A0CJ TCGA-A7-A26G TCGA-A7-A26I 
       18.61        17.36       105.34        30.61        23.74        21.73 
TCGA-A7-A4SB TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A07E 
       13.74        13.02        17.98        31.00        17.03        19.99 
TCGA-A8-A07L TCGA-A8-A07Z TCGA-A8-A08B TCGA-A8-A08P TCGA-A8-A092 TCGA-A8-A09Q 
       32.05        45.07        38.01        31.00        30.97        25.02 
TCGA-A8-A09X TCGA-AC-A23E TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A8OP TCGA-AN-A04C 
       14.01        22.95        11.44        13.71        20.19         1.78 
TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FV TCGA-AN-A0XN TCGA-AO-A03N 
        9.96         0.16         0.33         0.33         0.33        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03V TCGA-AO-A0J9 TCGA-AO-A0JL TCGA-AO-A124 
       81.63        95.70        29.13        53.03        55.33       115.27 
TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
      106.78        90.58        64.04        61.87        70.39         0.53 
TCGA-AQ-A04L TCGA-AQ-A54N TCGA-AR-A0TT TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AQ 
      130.09         2.56       109.02       108.36       101.00        99.32 
TCGA-AR-A1AW TCGA-AR-A24K TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A254 
       86.53        50.89        97.84        77.69       105.30        85.64 
TCGA-AR-A2LL TCGA-B6-A0I1 TCGA-B6-A0IE TCGA-B6-A0IO TCGA-B6-A0RL TCGA-B6-A0RO 
       66.15        77.62        65.72       165.76        81.17       162.05 
TCGA-B6-A0RS TCGA-B6-A0WV TCGA-B6-A1KC TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AY 
      100.70        79.63        43.59       103.63        62.93        25.55 
TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BL TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0E6 
       81.63        51.68        74.89         2.56        38.47         9.63 
TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0HP TCGA-BH-A18L TCGA-BH-A18R 
       44.81        32.58        31.00        13.61        26.66        37.55 
TCGA-BH-A18T TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1EY TCGA-BH-A1F2 
        7.36        67.50        91.99        12.00        17.69        31.53 
TCGA-BH-A1FN TCGA-C8-A12O TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A138 TCGA-C8-A1HK 
       72.07        12.66         3.16         1.87         4.08        12.03 
TCGA-C8-A1HM TCGA-C8-A26W TCGA-C8-A274 TCGA-C8-A8HP TCGA-D8-A13Z TCGA-D8-A147 
       12.33        12.53         9.53        13.02        20.88        19.20 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1XL TCGA-E2-A107 TCGA-E2-A10C 
       18.15        18.90        12.03        19.92        34.42        40.11 
TCGA-E2-A14O TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A15G TCGA-E2-A15S 
       44.68        18.51        63.62        19.43        18.21        14.07 
TCGA-E2-A1AZ TCGA-E2-A1LI TCGA-E2-A2P5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1R4 
       76.57       102.61        26.99        22.29        36.20         6.12 
TCGA-E9-A1RH TCGA-E9-A22B TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A5UP TCGA-EW-A1OV 
       46.59        38.37         0.69        38.99        26.40        25.94 
TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A423 TCGA-GM-A2DB TCGA-GM-A2DH 
       40.41        29.82         7.86        10.16        79.10        72.10 
TCGA-GM-A3XL TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-LL-A73Z 
       69.30         7.10        10.62        14.47         2.63         7.46 
TCGA-MS-A51U TCGA-OL-A5S0 TCGA-S3-AA10 
       22.39        20.38        19.27 

$`AMP PEAK 14(10Q22.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       48.36         8.52        43.43        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
       13.68        31.79         7.96        39.32        28.01        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
       18.21       143.15        18.02       121.94        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CP 
       63.12        55.43        36.13       136.73       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       88.60       107.93        77.19        75.25         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
      107.93        56.81        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       25.22       101.72        89.36        80.28       118.45        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       63.29        99.19        54.64        27.12        44.88        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
       17.52        49.84        20.52        17.46        18.90        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI 
       25.28        18.21        50.47        21.90        21.67        49.48 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX 
       19.33        48.46        31.73        23.77        23.47        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       22.45        20.25        19.20        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC 
      107.70        42.44        17.19        18.15        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD 
       21.30        23.21        26.96        21.14        21.90        38.30 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       35.31        34.29        35.47        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H 
       29.79        31.73        20.19        25.15        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY 
       31.36        24.26        23.80        20.61        22.32        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       10.59        10.29        11.28        13.41        14.70        11.97 
TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.93        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02         1.02        53.06        29.03        26.01         1.02 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
       53.98         9.01        43.00        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U 
       12.00         9.99        10.98         8.98         7.99        24.99 
TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C 
        9.99        15.06        36.95        13.02         0.99        28.96 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       33.01        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
        0.99        33.01       112.08        43.00        40.01        33.01 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       17.95        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
        1.02        50.04        49.05        45.07        29.98        33.07 
TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 
        1.02         8.98        19.04        15.02         0.99        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       19.04        13.02        21.04         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04         0.95        73.91         5.72         1.48        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       26.04        74.14        33.04        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM 
        6.48        16.31        14.83        22.19        24.13        25.05 
TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       14.99        16.57        19.79        15.48        23.24        24.79 
TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62Y 
       29.26        16.80        14.53        19.33        14.96        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC 
       18.67        13.58        12.26         1.68         8.22         0.03 
TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
        1.12         1.32         2.30         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AL 
        0.33         0.62         2.96         1.71         7.36         7.46 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FX 
        7.59         7.17         6.90         7.04         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.33         0.33         5.36        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J3 
       61.35        68.75        47.87        58.95        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JA 
       52.18        26.04        37.48        20.32        22.36        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       50.70        50.86        72.00        76.77        65.10        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 
       50.24        62.04        71.80        99.25       108.72       108.03 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        57.30        48.36        41.62        40.57        14.73 
TCGA-AO-A1KP TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       82.62        17.79        24.79        26.93         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR 
       32.52        32.91        19.20       140.55        98.33         5.26 
TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ 
       84.10        75.22        98.93        64.83        55.86       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
       65.36       133.22        83.87       134.14       107.21       125.16 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      103.86        97.68        98.33        96.00        86.07        93.90 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY 
       17.23        37.81        94.29        61.28        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
      160.90        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      104.28       112.77       105.27        32.58        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       89.00        99.62        93.30        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       40.54        57.27        73.35        33.30        38.96        10.59 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      143.38       281.29        12.13       275.87       129.57        50.70 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
       78.02       263.28       102.77       140.48        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
      157.41        97.48       188.68        18.35        21.47       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.88 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40C TCGA-BH-A0AV 
       85.35        70.16        68.12        18.84        71.15        59.84 
TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 
       20.45        63.09        81.44        40.83        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       70.22        84.13        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       61.51        21.70        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        53.95        45.57        49.94        77.95        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        44.02        89.06        90.97        45.83        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       23.44        38.01        29.98        13.91        78.28        17.26 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
       15.65         3.22        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY 
       15.68        14.30        46.19        24.49        24.43        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        37.78        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       41.00        52.96        26.50        20.38         5.85         2.50 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N 
        4.90        35.93        20.12        90.84        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1ES 
       30.28        55.63        66.05        51.39        51.16       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F5 
       82.85        42.28        55.69        49.58        25.81        89.16 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       97.48        24.62       120.62       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR 
      122.89        36.92        63.35        55.00        45.63       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       72.07        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       20.88        18.64        23.51         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       18.87        21.76         9.44        11.93        11.77        11.77 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       48.53        12.56        13.51        12.59        12.92         4.11 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL 
       12.33        10.92        11.34        11.28         0.16        10.42 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
       12.95        12.33        20.25        12.36        12.95         8.28 
TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
        9.67         0.03         9.50        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 
       12.95        12.49        13.41        19.46        56.81        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        21.14        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JG TCGA-D8-A1JH 
       17.49        16.50        55.50        15.78        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM 
       17.16        15.22        14.73        21.80        14.50        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       55.30        16.41        15.85        16.31        16.64        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       15.16        43.04        16.54        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       14.24        14.14        17.42        16.04        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       14.43        48.03        16.41        13.48         4.80         1.61 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       10.09        13.08        12.53        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 
       21.67        16.18        12.66        25.22        43.00        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       46.59        40.41        37.51        28.44        28.87        47.15 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       40.96        38.24        38.60        33.17        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A153 
       34.26        32.02        31.96        69.34        69.96        23.24 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       21.04        23.87        14.79        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       17.29        20.71        21.63        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
        9.04        20.58        11.05        50.79        19.56        56.94 
TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       51.39        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       16.47        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA 
       11.08        54.18        60.36        73.64        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90        50.07       106.75         8.75        43.04 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.29        17.69        34.82        32.88        36.82        34.16 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 
        1.12        46.65         6.58        21.27        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E 
       32.05        42.25        37.74        39.09        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       40.73        40.50        20.12         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       27.85        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OX 
       13.25        16.57        15.68        28.77        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 
       29.85        41.13        39.78        52.96        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
       30.08        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       14.43        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA 
       22.09        34.03        17.49        23.51        15.22        16.77 
TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       24.99        31.30        33.21         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DK 
      216.76        83.34        75.02        70.85        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
      115.69       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       43.73        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 
       62.47        11.84        11.57        21.24        13.22        13.28 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
       24.95        32.75        29.23        25.05        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 
       14.70        14.79        22.26        16.08        15.68        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 
       19.53        12.36        19.59        17.49        27.91         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
       36.30        58.52        31.99        58.62        40.08        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I 
       36.36        28.87        24.72        22.32        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P 
       65.62        41.92        42.77        26.04        17.36        14.07 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD 
       28.21        19.73        40.11         8.91        47.01        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG 
       86.96         0.16         0.26         9.93        18.81        18.48 
TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
       21.07        20.68        13.84        18.87        17.39        17.26 
TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 
       13.94        17.03         3.81        66.84        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35        16.04       108.07       107.05 

  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                        165.76                         282.90 
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                         29.82                          27.58 
[1] "0.2 - 165.8 (29.8)" "0.0 - 282.9 (27.6)"
[1] "hr=" "1.4"
D14V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 14(10Q22.3) MUTATED        10       10        0        0        61
  AMP PEAK 14(10Q22.3) WILD-TYPE      79       75        6        6       292
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 14(10Q22.3) MUTATED          27         0         24          5
  AMP PEAK 14(10Q22.3) WILD-TYPE       225         2        130         24
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 14(10Q22.3) MUTATED            6        3         1       1
  AMP PEAK 14(10Q22.3) WILD-TYPE         59       17         0      12
D14V3, multiclass
            clus
vv           AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  STAGE I                              10                             79
  STAGE IA                             10                             75
  STAGE IB                              0                              6
  STAGE II                              0                              6
  STAGE IIA                            61                            292
  STAGE IIB                            27                            225
  STAGE III                             0                              2
  STAGE IIIA                           24                            130
  STAGE IIIB                            5                             24
  STAGE IIIC                            6                             59
  STAGE IV                              3                             17
  STAGE TIS                             1                              0
  STAGE X                               1                             12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 14(10Q22.3) MUTATED    28  98  17   6
  AMP PEAK 14(10Q22.3) WILD-TYPE 248 526 119  34
D14V4, multiclass
    clus
vv   AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  T1                           28                            248
  T2                           98                            526
  T3                           17                            119
  T4                            6                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 14(10Q22.3) MUTATED    77  41  21   8
  AMP PEAK 14(10Q22.3) WILD-TYPE 430 317  98  69
D14V5, multiclass
    clus
vv   AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  N0                           77                            430
  N1                           41                            317
  N2                           21                             98
  N3                            8                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V6, binary
                                cls
clus                               0   1
  AMP PEAK 14(10Q22.3) MUTATED   135   3
  AMP PEAK 14(10Q22.3) WILD-TYPE 754  19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(10Q22.3) MUTATED    135    3
  AMP PEAK 14(10Q22.3) WILD-TYPE  754   19
   clus
vv  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  0                          135                            754
  1                            3                             19
[1] 2 2
[1] FALSE
D14V7, binary
                                cls
clus                               0   1
  AMP PEAK 14(10Q22.3) MUTATED   148   2
  AMP PEAK 14(10Q22.3) WILD-TYPE 920  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(10Q22.3) MUTATED    148    2
  AMP PEAK 14(10Q22.3) WILD-TYPE  920   10
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  FEMALE                          148                            920
  MALE                              2                             10
[1] 2 2
[1] FALSE
D14V8, binary
                                cls
clus                               0   1
  AMP PEAK 14(10Q22.3) MUTATED    62  70
  AMP PEAK 14(10Q22.3) WILD-TYPE 367 448
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(10Q22.3) MUTATED     62   70
  AMP PEAK 14(10Q22.3) WILD-TYPE  367  448
     clus
vv    AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  NO                            62                            367
  YES                           70                            448
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 14(10Q22.3) MUTATED                            0
  AMP PEAK 14(10Q22.3) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 14(10Q22.3) MUTATED                             125
  AMP PEAK 14(10Q22.3) WILD-TYPE                           645
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 14(10Q22.3) MUTATED                               11
  AMP PEAK 14(10Q22.3) WILD-TYPE                            189
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 14(10Q22.3) MUTATED                     3                     1
  AMP PEAK 14(10Q22.3) WILD-TYPE                   3                     8
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 14(10Q22.3) MUTATED                                  4
  AMP PEAK 14(10Q22.3) WILD-TYPE                               25
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 14(10Q22.3) MUTATED                    0              6
  AMP PEAK 14(10Q22.3) WILD-TYPE                 17             41
D14V9, multiclass
                                  clus
vv                                 AMP PEAK 14(10Q22.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             125
  INFILTRATING LOBULAR CARCINOMA                             11
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            4
  MUCINOUS CARCINOMA                                          0
  OTHER  SPECIFY                                              6
                                  clus
vv                                 AMP PEAK 14(10Q22.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               645
  INFILTRATING LOBULAR CARCINOMA                              189
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         8
  MIXED HISTOLOGY (PLEASE SPECIFY)                             25
  MUCINOUS CARCINOMA                                           17
  OTHER  SPECIFY                                               41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 14(10Q22.3) MUTATED                                  1    10
  AMP PEAK 14(10Q22.3) WILD-TYPE                                0    50
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 14(10Q22.3) MUTATED                          27    99
  AMP PEAK 14(10Q22.3) WILD-TYPE                       154   646
D14V11, multiclass
                                  clus
vv                                 AMP PEAK 14(10Q22.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      10
  BLACK OR AFRICAN AMERICAN                                  27
  WHITE                                                      99
                                  clus
vv                                 AMP PEAK 14(10Q22.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        50
  BLACK OR AFRICAN AMERICAN                                   154
  WHITE                                                       646
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V12, binary
                                cls
clus                               0   1
  AMP PEAK 14(10Q22.3) MUTATED     5 119
  AMP PEAK 14(10Q22.3) WILD-TYPE  34 756
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(10Q22.3) MUTATED      5  119
  AMP PEAK 14(10Q22.3) WILD-TYPE   34  756
                        clus
vv                       AMP PEAK 14(10Q22.3) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                          119
                        clus
vv                       AMP PEAK 14(10Q22.3) WILD-TYPE
  HISPANIC OR LATINO                                 34
  NOT HISPANIC OR LATINO                            756
[1] 2 2
[1] FALSE

Clustering(15) Variable = AMP PEAK 15(11P13) MUTATION ANALYSIS
D15V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 15(11P13) MUTATED   191  30
  AMP PEAK 15(11P13) WILD-TYPE 726 117
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         221                          843 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                          30                          117 
$`AMP PEAK 15(11P13) MUTATED`
TCGA-3C-AAAU TCGA-5T-A9QA TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO 
      129.14         9.96        20.88        31.79         7.96        28.01 
TCGA-A2-A04P TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CM TCGA-A2-A0CT 
       18.02        87.25       101.98        55.43        24.79        75.25 
TCGA-A2-A0D2 TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0EU TCGA-A2-A0EY 
       33.76        80.28        79.76        74.40        34.29        63.29 
TCGA-A2-A0ST TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T7 
       99.19        17.52        17.13         8.38        49.84        20.75 
TCGA-A2-A0YE TCGA-A2-A0YI TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A3KD 
       18.21        49.48        17.36        60.72        19.20        39.65 
TCGA-A2-A3XT TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0DC TCGA-A7-A26F TCGA-A7-A26G 
       91.07        38.30        30.61        29.79        24.26        23.74 
TCGA-A7-A26J TCGA-A7-A3J0 TCGA-A7-A425 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A5ZV 
       20.61        10.29        14.70        14.50        21.17        12.10 
TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07F TCGA-A8-A07R 
       10.29        10.42        17.03         9.01        18.97         8.98 
TCGA-A8-A07W TCGA-A8-A08B TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09A 
        9.99        38.01        33.01        33.01        17.95         9.99 
TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A0A1 TCGA-A8-A0A6 
       45.07        29.98        33.07        25.02        12.00        21.04 
TCGA-A8-A0A7 TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2BK TCGA-AC-A2FM TCGA-AC-A3QQ 
        0.99         0.95         5.72        73.05        26.04        24.13 
TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A8OP TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AL 
       11.44        17.42        20.19         1.78         9.96         7.46 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FY 
        0.33         0.33         7.96         7.00         7.59         0.33 
TCGA-AN-A0XL TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A0J2 TCGA-AO-A0J3 
        5.36         0.33         0.33        80.28        32.78        21.40 
TCGA-AO-A0JD TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A1KQ 
       72.00       108.72       108.03        90.58        98.27        61.87 
TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AR-A0TT 
        0.53        17.79        26.93       130.09        15.62       109.02 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0U2 TCGA-AR-A1AI TCGA-AR-A1AU TCGA-AR-A24K 
       98.93        64.83        83.87       108.36        94.29        50.89 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A250 TCGA-AR-A2LR TCGA-B6-A0I2 
      112.77        97.84       105.30        89.00        57.27       143.38 
TCGA-B6-A0IB TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RS 
      129.57       146.50       112.37       255.68        68.45       100.70 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A1KI TCGA-B6-A400 
      188.68        79.63       129.70       245.10        73.51         7.07 
TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0AY TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BP 
       68.12        62.93        25.55        61.51        21.70        75.48 
TCGA-BH-A0BT TCGA-BH-A0C0 TCGA-BH-A0DD TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DZ 
       45.57        41.75        45.83        17.26        15.65        16.27 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A18M TCGA-BH-A18U 
       24.43        30.35        23.08        26.50        72.56        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A202 
       51.16        67.50        91.99        31.53        97.48        26.14 
TCGA-BH-A208 TCGA-BH-A209 TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A132 TCGA-C8-A26Z 
       57.83       130.16        12.66        12.66         1.87         8.28 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HR TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 
       24.56        14.43        13.41        13.25        13.97        14.17 
TCGA-D8-A147 TCGA-D8-A1JD TCGA-D8-A1XF TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XY 
       19.20        18.15        15.22        14.50        19.92        16.54 
TCGA-D8-A1Y0 TCGA-D8-A1Y3 TCGA-D8-A27R TCGA-E2-A14O TCGA-E2-A14V TCGA-E2-A152 
       15.52        14.14        10.09        44.68        34.26        69.96 
TCGA-E2-A15A TCGA-E2-A15M TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1BC TCGA-E2-A1II 
       23.34        11.05        56.94        14.07        16.47        33.70 
TCGA-E2-A1IU TCGA-E2-A1L7 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N8 
       11.08        60.36        38.76        17.69        36.82        34.16 
TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1RB TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A243 
        6.12        11.15        32.09        46.65         6.58        20.12 
TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3QA TCGA-E9-A5FL 
       38.99         7.13        12.33        29.72        30.18         0.79 
TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1P5 TCGA-EW-A1P7 TCGA-EW-A1P8 
       18.90        28.77        29.85        23.11        30.08         7.86 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A6SB TCGA-EW-A6SD 
       19.99         6.15        17.49        10.16        24.99        33.21 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DL 
        7.40       109.87       216.76        70.85        72.10       115.69 
TCGA-HN-A2NL TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-OL-A5RW 
        2.60        14.70        14.79         2.63        15.68        36.36 
TCGA-OL-A66I TCGA-OL-A6VO TCGA-PL-A8LZ TCGA-S3-AA17 TCGA-Z7-A8R6 
       23.47        28.21         9.93        13.94       107.05 

$`AMP PEAK 15(11P13) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       13.68        39.32        19.20        18.21       143.15        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
      121.94        73.84        63.12        36.13       136.73        99.12 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU 
      114.81        92.48        88.60       107.93        77.19         5.19 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D3 
       98.99       107.93        56.81        67.33        34.55        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0ET 
       25.22       101.72        89.36       118.45        72.00        35.05 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       31.82        61.94        24.72        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
       50.43        44.28        20.52        17.46        18.90        32.55 
TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YK 
       25.28        50.47        21.90        21.67        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 
       48.46        31.73        23.77        23.47        22.45        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C 
       19.56        16.47        52.47       107.70        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XU 
       18.15       105.34        10.59        36.23        33.93        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        56.28        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA 
       21.90        35.31        34.29        35.47        37.45        35.67 
TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H 
       33.11        31.73        20.19        25.15        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       31.36        23.80        21.73        22.32        11.34        10.59 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SF 
       11.28        13.41        11.97        14.93        13.74        17.92 
TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06O 
       14.73        10.72        11.05         9.37         8.75        13.02 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       13.02         1.02        17.98        53.06        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G 
       26.01         1.02        53.98        43.00        19.99        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S 
       14.01        12.00        32.05         9.99        10.98         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
       24.99        45.07        15.06        36.95        13.02         0.99 
TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       28.96        33.01        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09C 
       30.97        41.98        12.00         9.99        12.00         1.02 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       50.04        49.05         1.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A9 TCGA-A8-A0AB 
        0.99        14.01        19.04        13.02        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB 
       38.04        22.95        73.91         1.48        99.35        40.57 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH 
       86.66        90.71        60.92        87.12        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 
       22.19        25.05        14.99        16.57        19.79        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS 
       23.24        24.79        29.26        16.80        14.53        19.33 
TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO 
       14.96        13.71        18.67        13.58        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        8.22         0.03         1.12         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D 
        0.33         0.23         0.33         0.62         2.96         1.71 
TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FN 
        7.36         0.16         0.33         6.44         5.65         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XV 
        0.33        12.33         0.30         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
        5.59        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       47.87        58.95        29.13        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL 
       76.77        65.10        26.24        50.24        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A12D TCGA-AO-A12E 
       71.80       115.27        99.25       106.78        64.04        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       48.36        41.62        40.57        14.73        82.62        70.39 
TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 
       24.79         5.65        32.52         2.56        32.91        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TY 
      140.55        98.33         5.26        84.10        75.22        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
      107.24        65.36       133.22       134.14       107.21       125.16 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO 
      101.00       103.86        97.68        98.33        96.00        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW 
       93.90        99.32        17.23        37.81        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       86.43        33.73       160.90        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W 
      118.59         2.76       104.28       105.27        77.69        32.58 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.76        98.66        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL 
       93.83       166.42        20.25        86.53        54.21        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN 
       63.62        38.17        39.39        40.54        73.35        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       38.96        10.59        77.62       281.29        12.13       275.87 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
       50.70        65.72       233.62        18.77       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      165.76       129.07       140.88       212.25       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
       78.02       263.28       162.05       102.77       140.48        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
      282.90       157.41        97.48        18.35        21.47       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      206.86        28.27        68.94        58.88        43.59       101.52 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A409 
      139.17       170.17        37.87        85.35        70.16        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B0 
      103.63        71.15        59.84        20.45        63.09        81.44 
TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 
       40.83        39.55        39.16        70.22        81.63        84.13 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BL 
       51.68        37.22        32.02        18.21        43.53        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV 
       61.68        72.23        74.14        76.60        53.95        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE 
       77.95        49.05        44.02        89.06        90.97        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DQ 
       23.44        38.01        29.98        13.91        78.28         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 
        2.56        38.47        67.86        70.88         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       14.30         9.63        44.81        46.19        32.58        24.49 
TCGA-BH-A0EE TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       31.00        10.78        15.16        37.78        53.26        24.56 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       41.00        52.96        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18N 
        4.90        35.93        20.12        90.84        26.66        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A1ES 
       30.28        55.63        37.55        66.05         7.36       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        89.16        24.62       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 
       72.07       144.59        72.07        28.14        38.60        83.31 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ 
       18.64        23.51         9.63         5.26         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12P 
       21.76         9.44        11.93        11.77        11.77        11.77 
TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
        3.16        13.51        12.59        12.92         4.11         4.08 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       10.42        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.36        12.95         9.67         9.53         0.03         9.50 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Y 
       33.99        12.95        13.02        12.49        19.46        56.81 
TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 
       20.88        20.58        13.48        21.14        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       16.50        55.50        15.78        18.90        12.03        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       14.01        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.38        21.01        12.20        13.32        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       17.79        16.73        25.74        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XM TCGA-D8-A1XO 
       12.39        17.16        14.73        21.80        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F 
       43.04        15.32         9.93        14.24        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        4.80         1.61        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       18.51        21.67        16.18        12.66        25.22        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.44        28.87        47.15        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       33.17        75.98        43.33        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       18.51        63.62        23.24        19.43        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       14.79        25.05        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       50.79        19.56        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       70.36        33.73        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       60.99        54.18        73.64        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       28.90        50.07       106.75       102.61         8.75        43.04 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       26.99        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.29        34.82        32.88        22.29        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 
        9.86        24.82        28.27        34.95         2.56         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG TCGA-E9-A1RH 
       48.23        45.01        40.24         1.12        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A244 
       38.37        41.03        41.72        40.73        40.50         0.69 
TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 
        1.94        24.56         9.47        38.07        32.91        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE 
       23.90        23.84        26.70        25.81        26.40        27.85 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 
       12.20        39.72         8.48        18.21        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 
       15.68        25.94        22.82        29.95        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1PA TCGA-EW-A1PD 
       39.78        52.96        29.82        18.48        18.90        13.94 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       10.52        14.43        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA 
       25.91        22.09        34.03        23.51        15.22        16.77 
TCGA-EW-A6SC TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DI 
       31.30        59.57        79.10        83.34        75.02        85.15 
TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       62.47        11.84        11.57        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Z 
       17.06        15.32        14.47        22.26        16.08         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       14.50        19.53        12.36        19.59        17.49        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       40.08        34.92        28.87        24.72        22.32        20.38 
TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       26.70        65.62        41.92        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD 
       14.07        19.73        40.11         8.91        47.01        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH 
       86.96         0.16         0.26        18.81        18.48        21.07 
TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
       20.68        19.27        13.84        18.87        17.39        17.26 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       17.03         3.81        66.84        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       15.35        16.04       108.07 

  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                        0.33                         0.03 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                      255.68                       282.90 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                       25.02                        28.44 
[1] "0.3 - 255.7 (25.0)" "0.0 - 282.9 (28.4)"
[1] "hr=" "1.1"
D15V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 15(11P13) MUTATED        15       17        2        2        75
  AMP PEAK 15(11P13) WILD-TYPE      74       68        4        4       278
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 15(11P13) MUTATED          53         0         29          9
  AMP PEAK 15(11P13) WILD-TYPE       199         2        125         20
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 15(11P13) MUTATED           11        5         0       3
  AMP PEAK 15(11P13) WILD-TYPE         54       15         1      10
D15V3, multiclass
            clus
vv           AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  STAGE I                            15                           74
  STAGE IA                           17                           68
  STAGE IB                            2                            4
  STAGE II                            2                            4
  STAGE IIA                          75                          278
  STAGE IIB                          53                          199
  STAGE III                           0                            2
  STAGE IIIA                         29                          125
  STAGE IIIB                          9                           20
  STAGE IIIC                         11                           54
  STAGE IV                            5                           15
  STAGE TIS                           0                            1
  STAGE X                             3                           10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  AMP PEAK 15(11P13) MUTATED    50 137  24  10
  AMP PEAK 15(11P13) WILD-TYPE 226 487 112  30
D15V4, multiclass
    clus
vv   AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  T1                         50                          226
  T2                        137                          487
  T3                         24                          112
  T4                         10                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  AMP PEAK 15(11P13) MUTATED   106  72  25  14
  AMP PEAK 15(11P13) WILD-TYPE 401 286  94  63
D15V5, multiclass
    clus
vv   AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  N0                        106                          401
  N1                         72                          286
  N2                         25                           94
  N3                         14                           63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V6, binary
                              cls
clus                             0   1
  AMP PEAK 15(11P13) MUTATED   188   6
  AMP PEAK 15(11P13) WILD-TYPE 701  16
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED    188    6
  AMP PEAK 15(11P13) WILD-TYPE  701   16
   clus
vv  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  0                        188                          701
  1                          6                           16
[1] 2 2
[1] FALSE
D15V7, binary
                              cls
clus                             0   1
  AMP PEAK 15(11P13) MUTATED   219   4
  AMP PEAK 15(11P13) WILD-TYPE 849   8
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED    219    4
  AMP PEAK 15(11P13) WILD-TYPE  849    8
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  FEMALE                        219                          849
  MALE                            4                            8
[1] 2 2
[1] FALSE
D15V8, binary
                              cls
clus                             0   1
  AMP PEAK 15(11P13) MUTATED    82 114
  AMP PEAK 15(11P13) WILD-TYPE 347 404
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED     82  114
  AMP PEAK 15(11P13) WILD-TYPE  347  404
     clus
vv    AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  NO                          82                          347
  YES                        114                          404
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  AMP PEAK 15(11P13) MUTATED                            1
  AMP PEAK 15(11P13) WILD-TYPE                          0
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 15(11P13) MUTATED                             187
  AMP PEAK 15(11P13) WILD-TYPE                           583
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 15(11P13) MUTATED                               18
  AMP PEAK 15(11P13) WILD-TYPE                            182
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 15(11P13) MUTATED                     3                     2
  AMP PEAK 15(11P13) WILD-TYPE                   3                     7
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 15(11P13) MUTATED                                  2
  AMP PEAK 15(11P13) WILD-TYPE                               27
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 15(11P13) MUTATED                    2              8
  AMP PEAK 15(11P13) WILD-TYPE                 15             39
D15V9, multiclass
                                  clus
vv                                 AMP PEAK 15(11P13) MUTATED
  INFILTRATING CARCINOMA NOS                                1
  INFILTRATING DUCTAL CARCINOMA                           187
  INFILTRATING LOBULAR CARCINOMA                           18
  MEDULLARY CARCINOMA                                       3
  METAPLASTIC CARCINOMA                                     2
  MIXED HISTOLOGY (PLEASE SPECIFY)                          2
  MUCINOUS CARCINOMA                                        2
  OTHER  SPECIFY                                            8
                                  clus
vv                                 AMP PEAK 15(11P13) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             583
  INFILTRATING LOBULAR CARCINOMA                            182
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       7
  MIXED HISTOLOGY (PLEASE SPECIFY)                           27
  MUCINOUS CARCINOMA                                         15
  OTHER  SPECIFY                                             39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 15(11P13) MUTATED                                  1    10
  AMP PEAK 15(11P13) WILD-TYPE                                0    50
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 15(11P13) MUTATED                          37   153
  AMP PEAK 15(11P13) WILD-TYPE                       144   592
D15V11, multiclass
                                  clus
vv                                 AMP PEAK 15(11P13) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                    10
  BLACK OR AFRICAN AMERICAN                                37
  WHITE                                                   153
                                  clus
vv                                 AMP PEAK 15(11P13) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      50
  BLACK OR AFRICAN AMERICAN                                 144
  WHITE                                                     592
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V12, binary
                              cls
clus                             0   1
  AMP PEAK 15(11P13) MUTATED     7 178
  AMP PEAK 15(11P13) WILD-TYPE  32 697
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED      7  178
  AMP PEAK 15(11P13) WILD-TYPE   32  697
                        clus
vv                       AMP PEAK 15(11P13) MUTATED
  HISPANIC OR LATINO                              7
  NOT HISPANIC OR LATINO                        178
                        clus
vv                       AMP PEAK 15(11P13) WILD-TYPE
  HISPANIC OR LATINO                               32
  NOT HISPANIC OR LATINO                          697
[1] 2 2
[1] FALSE

Clustering(16) Variable = AMP PEAK 16(11Q13.3) MUTATION ANALYSIS
D16V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 16(11Q13.3) MUTATED   335  58
  AMP PEAK 16(11Q13.3) WILD-TYPE 582  89
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           393                            671 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                            58                             89 
$`AMP PEAK 16(11Q13.3) MUTATED`
TCGA-3C-AAAU TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SI TCGA-A1-A0SJ 
      129.14         9.96        14.37        43.43        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04T 
       31.79         7.96        39.32        18.21        18.02        73.84 
TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CT TCGA-A2-A0CW 
       87.25        63.12       136.73        99.12        75.25       107.93 
TCGA-A2-A0D2 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0EU 
       33.76        25.22        80.28        79.76        74.40        34.29 
TCGA-A2-A0EW TCGA-A2-A0EY TCGA-A2-A0SW TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 
       61.94        63.29        44.88        17.13        49.84        20.52 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YJ 
       20.75        32.55        18.21        50.47        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A1G4 
       19.33        23.77        17.36        60.72        19.20        19.56 
TCGA-A2-A25A TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3Y0 TCGA-A7-A0CD 
      107.70        36.23        39.65        91.07        50.83        38.30 
TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26J 
       30.61        35.67        29.79        24.26        23.74        20.61 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A425 TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A5ZV 
       10.59        10.29        14.70        13.74        21.17        12.10 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06U 
       10.29         9.37        13.02         1.02        17.98        29.03 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
        1.02        17.03         9.01        43.00        19.99        18.97 
TCGA-A8-A07G TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B 
       18.97         8.98         9.99        36.95        13.02        38.01 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08P TCGA-A8-A08R 
       33.01        19.96        12.00        37.05        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09C 
       33.01        33.01        17.95        12.00         9.99         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09W TCGA-A8-A0A1 
       49.05        45.07        33.07        25.02         0.99        12.00 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23H 
       13.02        21.04         0.99        27.02        17.03         5.72 
TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QQ TCGA-AC-A3W5 
       99.35        26.04        16.31        14.83        24.13        16.57 
TCGA-AC-A4ZE TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IX TCGA-AN-A03X 
       29.26        14.96        11.44        17.42        12.26         0.33 
TCGA-AN-A03Y TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AS 
        0.33         0.62         1.78         9.96         7.46         0.33 
TCGA-AN-A0FK TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XN 
        7.00         6.90         0.36         0.33         5.36         0.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A0J3 TCGA-AO-A0JD 
        5.59        80.28        81.63        95.70        21.40        72.00 
TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JM TCGA-AO-A126 TCGA-AO-A12A TCGA-AO-A12B 
       76.77        26.24        71.80       108.72        90.58        98.27 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H 
       57.30        48.36        41.62         0.53        17.79        24.79 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TZ 
      130.09        15.62        32.91        75.22        98.93       107.24 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AK TCGA-AR-A1AN TCGA-AR-A1AP 
       83.87       134.14       107.21       103.86        96.00        93.90 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24R TCGA-AR-A24V 
       94.29        61.28        50.89        94.22       112.77       105.30 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A255 TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL 
       98.66        89.00        71.05        86.53        54.21        66.15 
TCGA-AR-A2LR TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IG 
       57.27       143.38        12.13       129.57        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RL TCGA-B6-A0RS 
      112.37       165.76       129.07       255.68        81.17       100.70 
TCGA-B6-A0RV TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0X0 TCGA-B6-A0X1 
      157.41        79.63        18.35       113.79       129.70       245.10 
TCGA-B6-A1KI TCGA-B6-A400 TCGA-B6-A408 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AV 
       73.51         7.07        68.12       103.63        62.93        59.84 
TCGA-BH-A0AY TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       25.55        51.68        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0C3 TCGA-BH-A0DD 
       21.70        76.60        45.57        49.94        89.06        45.83 
TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DZ 
       23.44        29.98        78.28        17.26        15.65        16.27 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H7 TCGA-BH-A0HK TCGA-BH-A0HU 
       24.43        30.35        10.78        23.08         5.85        12.89 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18L 
       27.25        50.79        23.93        35.93        20.12        26.66 
TCGA-BH-A18M TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EO 
       72.56        37.55         7.36        51.39        51.16        91.99 
TCGA-BH-A1ES TCGA-BH-A1EW TCGA-BH-A1F2 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FN 
      113.82        55.69        31.53        24.62       114.15        72.07 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28Q 
       28.14        26.14        38.60        57.83       130.16         6.44 
TCGA-BH-A42T TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P 
       10.52         9.44        11.93        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12W TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        12.66        48.53         3.16        13.51         1.87 
TCGA-C8-A138 TCGA-C8-A1HG TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HO 
        4.08        11.34        12.03        10.42        12.33        12.33 
TCGA-C8-A26W TCGA-C8-A26Z TCGA-C8-A278 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-D8-A13Y 
       12.53         8.28         9.50        12.95        12.49        56.81 
TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JF 
       13.25        13.97        17.49        15.78        18.15        12.03 
TCGA-D8-A1JI TCGA-D8-A1X5 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XF TCGA-D8-A1XJ 
       18.97        18.58        25.74        23.90        15.22        21.80 
TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 
       14.50        16.41        16.31        43.04        16.54        15.52 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27N TCGA-D8-A27R 
       14.24        14.14        13.45        13.05         4.80        10.09 
TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10E TCGA-E2-A14O 
       12.26        43.00        34.42        46.59        28.44        44.68 
TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A150 TCGA-E2-A152 
       40.96        33.17        34.26        31.96        63.62        69.96 
TCGA-E2-A154 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15K TCGA-E2-A15M TCGA-E2-A15O 
       19.43        23.34        20.71         9.04        11.05        50.79 
TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1IE TCGA-E2-A1IG 
       56.94        51.39        76.57        53.62        77.65        70.36 
TCGA-E2-A1II TCGA-E2-A1IU TCGA-E2-A1LA TCGA-E2-A1LH TCGA-E2-A1LK TCGA-E2-A2P6 
       33.70        11.08        24.59       106.75         8.75        34.55 
TCGA-E2-A56Z TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N8 
        8.28        38.76        34.29        17.69        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1QZ TCGA-E9-A1R6 TCGA-E9-A1RB TCGA-E9-A1RE 
       36.20        36.56        24.82        11.15        32.09        46.65 
TCGA-E9-A1RF TCGA-E9-A228 TCGA-E9-A22D TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A249 
        6.58        42.25        41.03         0.69        38.99         7.13 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3QA TCGA-E9-A5FL TCGA-EW-A1IW TCGA-EW-A1J1 
       12.33        29.72        30.18         0.79        12.20        18.90 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1P5 TCGA-EW-A1P8 
       16.57        15.68        28.77        29.95        23.11         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A423 
       18.90        19.99        55.00        52.73        22.09        10.16 
TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GM-A2D9 
       16.77        24.99        31.30        33.21         7.40        59.57 
TCGA-GM-A2DB TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DO 
       79.10        70.85        72.10        86.96       115.69        85.35 
TCGA-GM-A3NW TCGA-GM-A3XL TCGA-HN-A2NL TCGA-LD-A7W6 TCGA-LL-A440 TCGA-LL-A6FQ 
      110.50        69.30         2.60        13.28        24.95         2.63 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-OL-A5D7 TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5RZ 
       19.53        12.36        58.52        58.62        36.36        22.32 
TCGA-OL-A66J TCGA-OL-A66O TCGA-PE-A5DC TCGA-PL-A8LX TCGA-PL-A8LZ TCGA-S3-A6ZF 
       65.62        17.36        47.01         0.16         9.93        18.81 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB41 
       18.48        21.07        13.94        17.03         3.81        52.96 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       15.35        16.04       107.05 

$`AMP PEAK 16(11Q13.3) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SO TCGA-A1-A0SP 
        8.52        48.10        14.27        47.24        28.01        19.20 
TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      143.15        78.41       121.94       101.98        55.43        36.13 
TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       24.79       114.81        92.48        88.60       107.93        77.19 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D3 
        5.19        98.99        56.81        67.33        34.55        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EV 
      101.72        89.36       118.45        72.00        35.05        31.82 
TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0SY 
       24.72        99.19        54.64        27.12        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YG 
       17.52         8.38        17.46        18.90        25.28        21.90 
TCGA-A2-A0YH TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 
       21.67        48.46        31.73        23.47        22.45        20.25 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       16.47        52.47        42.44        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       10.59        33.93        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       35.93        50.37         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G 
       37.45        33.11        31.73        20.19        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3IY 
       29.56        31.36        23.80        21.73        22.32        11.34 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SF 
       11.28        13.41        11.97        14.93        14.50        17.92 
TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P 
       14.73        10.72        11.05        10.42         8.75        13.02 
TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A07I TCGA-A8-A07J 
       53.06        31.00        26.01        53.98        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z 
       32.05         9.99        10.98         7.99        24.99        45.07 
TCGA-A8-A084 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08T 
       15.06         0.99        28.96         9.99        31.00       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B 
       43.00        40.01        30.97        41.98         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       50.04        29.98         1.02         8.98        19.04        15.02 
TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       14.01        19.04        38.04         0.95        22.95        73.91 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
        1.48        73.05        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       87.12        74.14        33.04        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 
        6.48        22.19        25.05        14.99        19.79        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X 
       23.24        24.79        16.80        14.53        19.33        13.71 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP 
       18.67        13.58         1.68         8.22         0.03        20.19 
TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A 
        1.12         1.32         2.30         0.23         0.33         2.96 
TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD 
        1.71         7.36         0.16         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FT TCGA-AN-A0FV 
        5.65         7.96         7.59         7.17         7.04         0.33 
TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        0.33         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03R 
        0.33         0.33         5.33        61.35        66.77        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J5 
       47.87        58.95        29.13        32.78        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A124 
       50.86        65.10        50.24        62.04        55.33       115.27 
TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A12H TCGA-AO-A1KO 
       99.25       106.78       108.03        64.04        40.57        14.73 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H3 
       82.62        61.87        70.39        26.93         5.65        32.52 
TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS 
        2.56        19.20       140.55        98.33         5.26        84.10 
TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A1AH 
      109.02        64.83        55.86        65.36       133.22       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AQ 
      108.36       101.00        97.68        98.33        86.07        99.32 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       17.23        37.81        86.53        86.43        33.73       160.90 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S 
      120.33        99.78       118.59         2.76       104.28        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 
      105.27        77.69        32.58        98.76        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LM TCGA-AR-A2LN 
       85.64        93.83       166.42        20.25        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       39.39        40.54        73.35        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IJ TCGA-B6-A0IK 
       77.62       281.29       275.87        50.70       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      127.33        84.59       140.88        68.45       212.25       234.28 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
       78.02       263.28       162.05       102.77       140.48        89.46 
TCGA-B6-A0RU TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X4 
      282.90        97.48       188.68        21.47       206.86        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU 
       68.94        58.88        43.59       101.52       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A409 TCGA-B6-A40C TCGA-BH-A0AW 
       37.87        85.35        70.16        18.84        71.15        20.45 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       63.09        81.44        40.83        39.55        39.16        70.22 
TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       81.63        84.13        37.22        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       75.48        74.14        53.95        77.95        49.05        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DQ 
       44.02        90.97        77.98        38.01        13.91         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 
        2.56        38.47        67.86        70.88         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       14.30         9.63        44.81        46.19        32.58        24.49 
TCGA-BH-A0EE TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 
       31.00        15.16        37.78        53.26        24.56        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       52.96        26.50        20.38         2.50        13.61        36.85 
TCGA-BH-A0HW TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
       51.32         5.59        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18K TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       32.91         4.90        90.84        37.74        30.28        55.63 
TCGA-BH-A18S TCGA-BH-A1EN TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EX 
       66.05        67.50        82.85        42.28        12.00        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FD 
       17.69        25.81        89.16        97.48       120.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42U 
      144.59        72.07        83.31        10.65        20.12       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       20.88        18.64        23.51         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12N TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X 
       18.87        21.76        11.77        12.66        12.66        12.66 
TCGA-C8-A12Z TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF 
       12.56        12.59        12.92         4.11        12.33        10.92 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Y 
       11.28         0.16        12.95        20.25        12.36        12.95 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
        9.67         9.53         0.03        24.56        14.43        33.99 
TCGA-C8-A8HP TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A143 
       13.02        13.41        19.46        20.88        20.58        14.17 
TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        21.14        19.20        14.17        16.50        55.50 
TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       18.90        53.00        14.01        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       19.40        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       17.79        16.73        27.58        18.15        12.39        17.16 
TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XT 
       14.73        19.92        17.69        55.30        15.85        16.64 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A27E TCGA-D8-A27F 
       12.99        15.16        15.32         9.93        17.42        16.04 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T 
       14.43        48.03        16.41        13.48         1.61        13.08 
TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.53        33.37        18.51        21.67        16.18        12.66 
TCGA-D8-A73X TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10F 
       25.22        27.52        40.41        37.51        40.11        28.87 
TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W 
       47.15        38.24        38.60        75.98        43.33        32.02 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       69.34        18.51        23.24        21.04        23.87        14.79 
TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       25.05        22.82        17.29        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15L TCGA-E2-A15P TCGA-E2-A15S TCGA-E2-A1B1 
       55.63        53.92        20.58        19.56        14.07        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF 
       33.01        32.35        28.50        16.47        37.25        37.41 
TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.73        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        73.64        19.66        75.81        28.90 
TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A3DX TCGA-E2-A570 
       50.07       102.61        43.04        26.99        43.56        30.61 
TCGA-E2-A573 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1NC TCGA-E9-A1ND 
       34.92        34.82        32.88        22.29        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1R0 
       35.77        35.24        25.84        18.94         9.86        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RA 
       34.95         2.56         6.12         3.02        48.23        45.01 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       40.24         1.12        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G 
       32.05        37.74        39.09        38.37        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO 
       40.50        20.12         1.94        24.56         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO 
       32.91        30.44        23.90        23.84        26.70        25.81 
TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 
       26.40        27.85        39.72         8.48        18.21        13.25 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        22.82        29.85        40.41        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PC TCGA-EW-A1PD 
       52.96        29.82        18.48        30.08         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A3E8 
       10.52        14.43        34.55        19.96        25.91        34.03 
TCGA-EW-A3U0 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DC 
       17.49        23.51        15.22       109.87       216.76        83.34 
TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NY TCGA-GM-A3XG 
       75.02        85.15       106.06       101.62        38.20        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW 
       66.38        72.03        13.55        18.12        62.47        11.84 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A441 
       11.57        21.24        13.22         7.10        10.62        32.75 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       29.23        25.05        17.06        15.32        14.70        14.47 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       14.79        22.26        16.08        15.68         7.46        14.50 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       19.59        17.49        27.91        22.39         2.10        36.30 
TCGA-OL-A5D8 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5S0 
       31.99        40.08        34.92        28.87        24.72        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66P 
       26.70        23.47        41.92        42.77        26.04        14.07 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE 
       28.21        19.73        40.11         8.91        64.21        86.96 
TCGA-PL-A8LY TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
        0.26        20.68        19.27        13.84        18.87        17.39 
TCGA-S3-AA15 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB44 TCGA-Z7-A8R5 
       17.26        66.84        11.41        29.03       108.07 

  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                        255.68                         282.90 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                         25.74                          28.50 
[1] "0.2 - 255.7 (25.7)" "0.0 - 282.9 (28.5)"
[1] "hr=" "1.2"
D16V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 16(11Q13.3) MUTATED        32       23        2        3       133
  AMP PEAK 16(11Q13.3) WILD-TYPE      57       62        4        3       220
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 16(11Q13.3) MUTATED          93         1         59         14
  AMP PEAK 16(11Q13.3) WILD-TYPE       159         1         95         15
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 16(11Q13.3) MUTATED           22        9         1       6
  AMP PEAK 16(11Q13.3) WILD-TYPE         43       11         0       7
D16V3, multiclass
            clus
vv           AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  STAGE I                              32                             57
  STAGE IA                             23                             62
  STAGE IB                              2                              4
  STAGE II                              3                              3
  STAGE IIA                           133                            220
  STAGE IIB                            93                            159
  STAGE III                             1                              1
  STAGE IIIA                           59                             95
  STAGE IIIB                           14                             15
  STAGE IIIC                           22                             43
  STAGE IV                              9                             11
  STAGE TIS                             1                              0
  STAGE X                               6                              7
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 16(11Q13.3) MUTATED    86 246  44  19
  AMP PEAK 16(11Q13.3) WILD-TYPE 190 378  92  21
D16V4, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  T1                           86                            190
  T2                          246                            378
  T3                           44                             92
  T4                           19                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 16(11Q13.3) MUTATED   183 130  50  28
  AMP PEAK 16(11Q13.3) WILD-TYPE 324 228  69  49
D16V5, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  N0                          183                            324
  N1                          130                            228
  N2                           50                             69
  N3                           28                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V6, binary
                                cls
clus                               0   1
  AMP PEAK 16(11Q13.3) MUTATED   332  11
  AMP PEAK 16(11Q13.3) WILD-TYPE 557  11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED    332   11
  AMP PEAK 16(11Q13.3) WILD-TYPE  557   11
   clus
vv  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  0                          332                            557
  1                           11                             11
[1] 2 2
[1] FALSE
D16V7, binary
                                cls
clus                               0   1
  AMP PEAK 16(11Q13.3) MUTATED   390   8
  AMP PEAK 16(11Q13.3) WILD-TYPE 678   4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED    390    8
  AMP PEAK 16(11Q13.3) WILD-TYPE  678    4
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  FEMALE                          390                            678
  MALE                              8                              4
[1] 2 2
[1] FALSE
D16V8, binary
                                cls
clus                               0   1
  AMP PEAK 16(11Q13.3) MUTATED   151 196
  AMP PEAK 16(11Q13.3) WILD-TYPE 278 322
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED    151  196
  AMP PEAK 16(11Q13.3) WILD-TYPE  278  322
     clus
vv    AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  NO                           151                            278
  YES                          196                            322
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 16(11Q13.3) MUTATED                            1
  AMP PEAK 16(11Q13.3) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 16(11Q13.3) MUTATED                             301
  AMP PEAK 16(11Q13.3) WILD-TYPE                           469
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 16(11Q13.3) MUTATED                               62
  AMP PEAK 16(11Q13.3) WILD-TYPE                            138
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 16(11Q13.3) MUTATED                     3                     2
  AMP PEAK 16(11Q13.3) WILD-TYPE                   3                     7
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 16(11Q13.3) MUTATED                                  9
  AMP PEAK 16(11Q13.3) WILD-TYPE                               20
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 16(11Q13.3) MUTATED                    5             15
  AMP PEAK 16(11Q13.3) WILD-TYPE                 12             32
D16V9, multiclass
                                  clus
vv                                 AMP PEAK 16(11Q13.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             301
  INFILTRATING LOBULAR CARCINOMA                             62
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             15
                                  clus
vv                                 AMP PEAK 16(11Q13.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               469
  INFILTRATING LOBULAR CARCINOMA                              138
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         7
  MIXED HISTOLOGY (PLEASE SPECIFY)                             20
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 16(11Q13.3) MUTATED                                  1    25
  AMP PEAK 16(11Q13.3) WILD-TYPE                                0    35
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 16(11Q13.3) MUTATED                          67   258
  AMP PEAK 16(11Q13.3) WILD-TYPE                       114   487
D16V11, multiclass
                                  clus
vv                                 AMP PEAK 16(11Q13.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      25
  BLACK OR AFRICAN AMERICAN                                  67
  WHITE                                                     258
                                  clus
vv                                 AMP PEAK 16(11Q13.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        35
  BLACK OR AFRICAN AMERICAN                                   114
  WHITE                                                       487
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V12, binary
                                cls
clus                               0   1
  AMP PEAK 16(11Q13.3) MUTATED    16 314
  AMP PEAK 16(11Q13.3) WILD-TYPE  23 561
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED     16  314
  AMP PEAK 16(11Q13.3) WILD-TYPE   23  561
                        clus
vv                       AMP PEAK 16(11Q13.3) MUTATED
  HISPANIC OR LATINO                               16
  NOT HISPANIC OR LATINO                          314
                        clus
vv                       AMP PEAK 16(11Q13.3) WILD-TYPE
  HISPANIC OR LATINO                                 23
  NOT HISPANIC OR LATINO                            561
[1] 2 2
[1] FALSE

Clustering(17) Variable = AMP PEAK 17(11Q14.1) MUTATION ANALYSIS
D17V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 17(11Q14.1) MUTATED   225  40
  AMP PEAK 17(11Q14.1) WILD-TYPE 692 107
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           265                            799 
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                            40                            107 
$`AMP PEAK 17(11Q14.1) MUTATED`
TCGA-3C-AAAU TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
      129.14         9.96        14.37        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04T 
        7.96        39.32        28.01        19.20        18.21        73.84 
TCGA-A2-A04U TCGA-A2-A0CL TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0EO TCGA-A2-A0EQ 
       87.25        99.12       107.93        67.33        80.28        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EY TCGA-A2-A0ST 
       74.40        72.00        34.29        61.94        63.29        99.19 
TCGA-A2-A0SW TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0YE TCGA-A2-A0YJ TCGA-A2-A1FX 
       44.88        17.13        20.52        18.21        18.61        60.72 
TCGA-A2-A1G1 TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A4RW TCGA-A2-A4S3 
       19.20        36.23        39.65        91.07         7.30        21.90 
TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A26F 
       38.30        30.61        35.67        29.79        20.19        24.26 
TCGA-A7-A26G TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A5ZV 
       23.74        10.59        10.29        13.74        17.92        12.10 
TCGA-A7-A6VW TCGA-A8-A06Q TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07B 
        9.37         1.02         1.02        17.03         9.01        43.00 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A086 
       18.97        18.97        14.01         9.99         8.98        13.02 
TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08R TCGA-A8-A09A TCGA-A8-A09C 
       38.01        33.01        12.00         0.99         9.99         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09W TCGA-A8-A0A1 
       49.05        45.07        33.07        25.02         0.99        12.00 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A2FE 
       13.02        21.04         0.99        27.02        17.03        86.66 
TCGA-AC-A3OD TCGA-AC-A3W5 TCGA-AC-A4ZE TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IX 
       14.83        16.57        29.26        11.44        17.42        12.26 
TCGA-AC-A7VB TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A0AL 
        8.22         0.33         0.33         0.62         1.78         7.46 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FK TCGA-AN-A0FV TCGA-AN-A0FX 
        0.33         0.33         0.33         7.00         0.33         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A0J6 
        0.33         0.33         0.33         0.33         5.59        37.48 
TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A126 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12G 
       76.77        26.24       108.72        90.58        98.27        41.62 
TCGA-AO-A1KT TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AR-A0TT TCGA-AR-A0TV 
       17.79       130.09        15.62        32.91       109.02        75.22 
TCGA-AR-A0TW TCGA-AR-A0U2 TCGA-AR-A1AP TCGA-AR-A1AU TCGA-AR-A24K TCGA-AR-A24R 
       98.93        83.87        93.90        94.29        50.89       112.77 
TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A2LJ TCGA-AR-A2LR TCGA-B6-A0I2 
      105.30        98.66        89.00        86.53        57.27       143.38 
TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IO TCGA-B6-A0RE TCGA-B6-A0RL 
       12.13       129.57        65.72       165.76       255.68        81.17 
TCGA-B6-A0RS TCGA-B6-A0WY TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A1KI TCGA-B6-A400 
      100.70       113.79       129.70       245.10        73.51         7.07 
TCGA-B6-A408 TCGA-B6-A40B TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0BC TCGA-BH-A0BD 
       68.12       103.63        59.84        25.55        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0DD 
       43.53        61.51        21.70        76.60        45.57        45.83 
TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0E0 TCGA-BH-A0EI 
       23.44        29.98        17.26        15.65         4.41        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H7 TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A18I 
       30.35        10.78        23.08        50.79        23.93        35.93 
TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18U 
       20.12        72.56        30.28        37.55         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FN 
       51.16        67.50        91.99        24.62       114.15        72.07 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28Q 
       28.14        26.14        38.60        57.83       130.16         6.44 
TCGA-BH-A5IZ TCGA-BH-A8FY TCGA-C8-A12L TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12Y 
       18.64         9.70        11.93        11.77        12.66        48.53 
TCGA-C8-A278 TCGA-C8-A27A TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A1J9 
        9.50        24.56        56.81        13.25        13.97        17.49 
TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1X5 TCGA-D8-A1X8 TCGA-D8-A1XF TCGA-D8-A1XJ 
       15.78        12.03        18.58        25.74        15.22        21.80 
TCGA-D8-A1XK TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 
       14.50        16.31        12.99        43.04        16.54        15.52 
TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27M TCGA-D8-A27R TCGA-E2-A10A 
       14.14        13.45        13.05        13.48        10.09        40.41 
TCGA-E2-A10E TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14X TCGA-E2-A152 TCGA-E2-A155 
       28.44        38.60        33.17        31.96        69.96        21.04 
TCGA-E2-A15A TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1IE TCGA-E2-A1II TCGA-E2-A1IU 
       23.34        76.57        53.62        77.65        33.70        11.08 
TCGA-E2-A1LK TCGA-E2-A2P6 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N8 TCGA-E9-A1NA 
        8.75        34.55        38.76        17.69        34.16        36.56 
TCGA-E9-A1QZ TCGA-E9-A1R6 TCGA-E9-A1RB TCGA-E9-A228 TCGA-E9-A22G TCGA-E9-A244 
       24.82        11.15        32.09        42.25        40.73         0.69 
TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A5FL TCGA-EW-A1J6 
       38.99         7.13        12.33        29.72         0.79        28.77 
TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A2FW TCGA-EW-A6SB 
       23.11         7.86        18.90        19.99        22.09        24.99 
TCGA-EW-A6SD TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DH TCGA-GM-A3NW TCGA-GM-A3XL 
       33.21        59.57        79.10        72.10       110.50        69.30 
TCGA-HN-A2NL TCGA-LL-A441 TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-OL-A5D7 TCGA-PE-A5DC 
        2.60        32.75         2.63        15.68        58.52        47.01 
TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB41 
        9.93        18.81        13.94        17.03         3.81        52.96 
TCGA-XX-A899 
       15.35 

$`AMP PEAK 17(11Q14.1) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A2-A04N 
        8.52        43.43        48.10        14.27        47.24       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X 
       18.02        78.41       121.94        63.12       101.98        55.43 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
       36.13       136.73        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX 
      107.93        77.19        75.25         5.19        98.99        56.81 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72        89.36 
TCGA-A2-A0EP TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EX TCGA-A2-A0SU TCGA-A2-A0SV 
      118.45        35.05        31.82        24.72        54.64        27.12 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 
       50.43        44.28        17.52         8.38        49.84        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       21.67        49.48        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 
       23.47        17.36        22.45        20.25        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       52.47       107.70        42.44        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       10.59        33.93        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       35.93        50.37        50.83        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 
       26.96        21.14        35.31        34.29        35.47        37.45 
TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E 
       33.11        31.73        25.15        23.61        29.56        31.36 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3J1 
       23.80        21.73        20.61        22.32        11.34        11.28 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SE 
       13.41        14.70        11.97        14.93        14.50        21.17 
TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A7-A6VY 
       14.73        10.72        11.05        10.29        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       13.02        13.02        17.98        53.06        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A07E TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P 
       26.01        53.98        19.99        12.00        32.05        10.98 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 
        7.99        24.99         9.99        45.07        15.06        36.95 
TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
        0.99        28.96        19.96        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
       31.00        33.01       112.08        43.00        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09B 
       30.97        17.95        41.98        12.00         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       50.04        29.98         1.02         8.98        19.04        15.02 
TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       14.01        19.04        38.04         0.95        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
        5.72         1.48        73.05        99.35        40.57        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3QQ 
       14.66        32.45         6.48        16.31        22.19        24.13 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       25.05        14.99        19.79        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A6IV 
       16.80        14.53        19.33        14.96        13.71        18.67 
TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR 
       13.58         1.68         0.03        20.19         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ 
        2.30         0.23         0.33         2.96         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FL 
        7.36         0.16         6.44         5.65         7.96         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0XL TCGA-AN-A0XO 
        7.17         6.90         7.04         0.36         5.36        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L 
        0.30         0.33         0.33         0.33         5.33        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        29.13        32.78        21.40        52.18        26.04 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        65.10        50.24        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A12E 
      115.27        99.25       106.78       108.03        64.04        57.30 
TCGA-AO-A12F TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR 
       48.36        40.57        14.73        82.62        61.87        70.39 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54N 
        0.53        24.79        26.93         5.65        32.52         2.56 
TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TX 
       19.20       140.55        98.33         5.26        84.10        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 
       55.86       107.24        65.36       133.22       134.14       107.21 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      125.16       108.36       101.00       103.86        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV 
       96.00        86.07        99.32        17.23        37.81        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M 
       86.53        86.43        33.73       160.90        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T 
       99.78       118.59         2.76       104.28        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       77.69        32.58        98.76        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LK TCGA-AR-A2LL 
       71.05        93.83       166.42        20.25        54.21        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN 
       63.62        38.17        39.39        40.54        73.35        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC 
       38.96        10.59        77.62       281.29       275.87        50.70 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM 
      129.07       140.88        68.45       212.25       234.28        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.48        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      157.41        97.48       188.68        79.63        18.35        21.47 
TCGA-B6-A0WZ TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      206.86        28.27        68.94        58.88        43.59       101.52 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A409 
      139.17       170.17        37.87        85.35        70.16        18.84 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 
       71.15        62.93        20.45        63.09        81.44        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 
       39.55        39.16        70.22        81.63        84.13        51.68 
TCGA-BH-A0BA TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       37.22        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       53.95        49.94        77.95        49.05        41.75        44.02 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DL 
       89.06        90.97        77.98        38.01        13.91        78.28 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        38.47        67.86        70.88        16.27 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       15.68        14.30         9.63        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       24.49        31.00        15.16        37.78        53.26        24.56 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       41.00        52.96        26.50        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX 
       13.61        36.85        12.89        51.32        27.25         5.59 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A1ES 
       90.84        26.66        37.74        55.63        66.05       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FD 
       25.81        31.53        89.16        97.48       120.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42T 
      144.59        72.07        83.31        10.65        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FZ 
      109.28        20.88        23.51         9.63         5.26        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12U 
       21.76         9.44        11.77        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        12.66        12.56         3.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
        1.87        12.59        12.92         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL 
       10.92        11.34        11.28         0.16        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A27B 
       12.95         8.28         9.67         9.53         0.03        14.43 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ 
       33.99        12.95        13.02        12.49        13.41        19.46 
TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 
       20.88        20.58        14.17        13.48        21.14        19.20 
TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG 
       14.17        16.50        55.50        18.15        18.90        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       14.01        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 
       20.38        21.01        12.20        13.32        14.70        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       16.73        23.90        27.58        18.15        12.39        17.16 
TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.73        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E 
       16.64        15.16        15.32         9.93        14.24        17.42 
TCGA-D8-A27F TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P 
       16.04        14.43        48.03        16.41         4.80         1.61 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       16.18        12.66        25.22        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       46.59        37.51        40.11        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       40.96        38.24        75.98        43.33        34.26        32.02 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 
       69.34        18.51        63.62        23.24        19.43        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       14.79        25.05        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       11.05        50.79        19.56        56.94        14.07        51.39 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD 
       87.22        33.01        32.35        28.50        16.47        37.25 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       37.41        70.36        33.73        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 
       22.19        60.99        54.18        60.36        73.64        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI 
       24.59        75.81        28.90        50.07       106.75       102.61 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       43.04        26.99        43.56         8.28        30.61        34.92 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 
       34.29        34.82        32.88        36.82        22.29        36.20 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
        9.86        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       48.23        45.01        40.24         1.12        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A229 
       21.27        46.59        47.64        34.45        32.05        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 
       39.09        38.37        41.03        41.72        40.50        20.12 
TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
        1.94        24.56         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP 
       30.44        23.90        23.84        26.70        25.81        26.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       27.85        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       13.25        16.57        15.68        25.94        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 
       29.85        40.41        41.13        39.78        52.96        29.82 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF 
       18.48        30.08         6.15        13.94        10.52        14.43 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3E8 
       34.55        19.96        55.00        52.73        25.91        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SC 
       17.49        10.16        23.51        15.22        16.77        31.30 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF 
        7.40       109.87       216.76        83.34        75.02        70.85 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       85.15        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        66.38        72.03        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       62.47        11.84        11.57        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       13.28        10.62        24.95        29.23        25.05        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR 
       15.32        14.70        14.47        14.79        22.26        16.08 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 
        7.46        14.50        19.53        12.36        19.59        17.49 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA 
       27.91        22.39         2.10        36.30        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       40.08        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       20.38        26.70        23.47        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       26.04        17.36        14.07        28.21        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZG 
        8.91        64.21        86.96         0.16         0.26        18.48 
TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       21.07        20.68        19.27        13.84        18.87        17.39 
TCGA-S3-AA15 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R5 
       17.26        66.84        11.41        29.03        16.04       108.07 
TCGA-Z7-A8R6 
      107.05 

  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                          0.33                           0.03 
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                        255.68                         282.90 
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                         24.82                          28.87 
[1] "0.3 - 255.7 (24.8)" "0.0 - 282.9 (28.9)"
[1] "hr=" "1.2"
D17V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 17(11Q14.1) MUTATED        18       18        1        2        99
  AMP PEAK 17(11Q14.1) WILD-TYPE      71       67        5        4       254
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 17(11Q14.1) MUTATED          51         0         40          8
  AMP PEAK 17(11Q14.1) WILD-TYPE       201         2        114         21
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 17(11Q14.1) MUTATED           19        6         1       4
  AMP PEAK 17(11Q14.1) WILD-TYPE         46       14         0       9
D17V3, multiclass
            clus
vv           AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  STAGE I                              18                             71
  STAGE IA                             18                             67
  STAGE IB                              1                              5
  STAGE II                              2                              4
  STAGE IIA                            99                            254
  STAGE IIB                            51                            201
  STAGE III                             0                              2
  STAGE IIIA                           40                            114
  STAGE IIIB                            8                             21
  STAGE IIIC                           19                             46
  STAGE IV                              6                             14
  STAGE TIS                             1                              0
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 17(11Q14.1) MUTATED    60 170  24  10
  AMP PEAK 17(11Q14.1) WILD-TYPE 216 454 112  30
D17V4, multiclass
    clus
vv   AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  T1                           60                            216
  T2                          170                            454
  T3                           24                            112
  T4                           10                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 17(11Q14.1) MUTATED   128  75  36  23
  AMP PEAK 17(11Q14.1) WILD-TYPE 379 283  83  54
D17V5, multiclass
    clus
vv   AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  N0                          128                            379
  N1                           75                            283
  N2                           36                             83
  N3                           23                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V6, binary
                                cls
clus                               0   1
  AMP PEAK 17(11Q14.1) MUTATED   226   7
  AMP PEAK 17(11Q14.1) WILD-TYPE 663  15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q14.1) MUTATED    226    7
  AMP PEAK 17(11Q14.1) WILD-TYPE  663   15
   clus
vv  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  0                          226                            663
  1                            7                             15
[1] 2 2
[1] FALSE
D17V7, binary
                                cls
clus                               0   1
  AMP PEAK 17(11Q14.1) MUTATED   262   5
  AMP PEAK 17(11Q14.1) WILD-TYPE 806   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q14.1) MUTATED    262    5
  AMP PEAK 17(11Q14.1) WILD-TYPE  806    7
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  FEMALE                          262                            806
  MALE                              5                              7
[1] 2 2
[1] FALSE
D17V8, binary
                                cls
clus                               0   1
  AMP PEAK 17(11Q14.1) MUTATED    93 128
  AMP PEAK 17(11Q14.1) WILD-TYPE 336 390
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q14.1) MUTATED     93  128
  AMP PEAK 17(11Q14.1) WILD-TYPE  336  390
     clus
vv    AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  NO                            93                            336
  YES                          128                            390
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 17(11Q14.1) MUTATED                            1
  AMP PEAK 17(11Q14.1) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 17(11Q14.1) MUTATED                             212
  AMP PEAK 17(11Q14.1) WILD-TYPE                           558
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 17(11Q14.1) MUTATED                               34
  AMP PEAK 17(11Q14.1) WILD-TYPE                            166
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 17(11Q14.1) MUTATED                     2                     2
  AMP PEAK 17(11Q14.1) WILD-TYPE                   4                     7
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 17(11Q14.1) MUTATED                                  3
  AMP PEAK 17(11Q14.1) WILD-TYPE                               26
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 17(11Q14.1) MUTATED                    2             11
  AMP PEAK 17(11Q14.1) WILD-TYPE                 15             36
D17V9, multiclass
                                  clus
vv                                 AMP PEAK 17(11Q14.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             212
  INFILTRATING LOBULAR CARCINOMA                             34
  MEDULLARY CARCINOMA                                         2
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            3
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                             11
                                  clus
vv                                 AMP PEAK 17(11Q14.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               558
  INFILTRATING LOBULAR CARCINOMA                              166
  MEDULLARY CARCINOMA                                           4
  METAPLASTIC CARCINOMA                                         7
  MIXED HISTOLOGY (PLEASE SPECIFY)                             26
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 17(11Q14.1) MUTATED                                  1     9
  AMP PEAK 17(11Q14.1) WILD-TYPE                                0    51
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 17(11Q14.1) MUTATED                          46   179
  AMP PEAK 17(11Q14.1) WILD-TYPE                       135   566
D17V11, multiclass
                                  clus
vv                                 AMP PEAK 17(11Q14.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       9
  BLACK OR AFRICAN AMERICAN                                  46
  WHITE                                                     179
                                  clus
vv                                 AMP PEAK 17(11Q14.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        51
  BLACK OR AFRICAN AMERICAN                                   135
  WHITE                                                       566
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V12, binary
                                cls
clus                               0   1
  AMP PEAK 17(11Q14.1) MUTATED     7 214
  AMP PEAK 17(11Q14.1) WILD-TYPE  32 661
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q14.1) MUTATED      7  214
  AMP PEAK 17(11Q14.1) WILD-TYPE   32  661
                        clus
vv                       AMP PEAK 17(11Q14.1) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                          214
                        clus
vv                       AMP PEAK 17(11Q14.1) WILD-TYPE
  HISPANIC OR LATINO                                 32
  NOT HISPANIC OR LATINO                            661
[1] 2 2
[1] FALSE

Clustering(18) Variable = AMP PEAK 18(12P13.33) MUTATION ANALYSIS
D18V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 18(12P13.33) MUTATED   242  36
  AMP PEAK 18(12P13.33) WILD-TYPE 675 111
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            278                             786 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                             36                             111 
$`AMP PEAK 18(12P13.33) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SN 
      129.14        48.10        47.24        13.68        31.79        39.32 
TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04T TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CX 
       28.01        19.20        73.84        77.19         5.19        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EY TCGA-A2-A0YE 
       67.33        33.76        35.05        34.29        63.29        18.21 
TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1FW TCGA-A2-A1G1 TCGA-A2-A3XS 
       21.67        18.61        31.73        17.36        19.20        33.93 
TCGA-A2-A3XT TCGA-A2-A3XW TCGA-A2-A3Y0 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0DC 
       91.07        56.28        50.83        38.30        35.31        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26E TCGA-A7-A26J TCGA-A7-A2KD 
       31.73        20.19        25.15        31.36        20.61        22.32 
TCGA-A7-A425 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       14.70        13.74        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A076 
       12.10         9.37        10.42        17.98        26.01        53.98 
TCGA-A8-A079 TCGA-A8-A07L TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A08G 
        9.01        32.05         8.98        24.99        45.07        19.96 
TCGA-A8-A08J TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A092 TCGA-A8-A09A 
       37.05        31.00         0.99        33.01        30.97         9.99 
TCGA-A8-A09C TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09X 
        1.02        29.98        33.07         1.02        25.02        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A3W5 
       12.00        27.02        22.95        26.04        33.04        16.57 
TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A6IW TCGA-AN-A03Y TCGA-AN-A04C TCGA-AN-A0AL 
       14.96        13.71        13.58         0.33         1.78         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FT TCGA-AN-A0FW 
        0.16         0.33         7.96         7.00         7.04         0.36 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XO TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03N 
        0.33         0.33        12.33         0.33        80.28        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J7 TCGA-AO-A0J9 
       81.63        95.70        32.78        52.18        20.32        53.03 
TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12E TCGA-AO-A12F 
       72.00        55.33       115.27       108.03        57.30        48.36 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       61.87        70.39         0.53        26.93         5.65         2.56 
TCGA-AR-A0TQ TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AI 
       98.33        84.10        75.22       134.14       107.21       108.36 
TCGA-AR-A1AK TCGA-AR-A1AQ TCGA-AR-A24H TCGA-AR-A24Q TCGA-AR-A24W TCGA-AR-A24Z 
      103.86        99.32       160.90       104.28        32.58        98.66 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IJ TCGA-B6-A0IO 
       57.27        73.35       143.38        12.13       233.62       165.76 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0WV TCGA-B6-A0WY 
      140.88       255.68       162.05       100.70        79.63       113.79 
TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A400 TCGA-B6-A402 TCGA-B6-A408 
      245.10        43.59        73.51         7.07        70.16        68.12 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BG 
       62.93        59.84        70.22        51.68        37.22        61.51 
TCGA-BH-A0BL TCGA-BH-A0BT TCGA-BH-A0C1 TCGA-BH-A0DL TCGA-BH-A0E0 TCGA-BH-A0E7 
       74.89        45.57        44.02        78.28         4.41        44.81 
TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0HX TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18N 
       24.49        30.35        27.25        90.84        26.66        37.74 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1EU 
       55.63        37.55         7.36        51.16        91.99        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1FC TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A203 
       12.00        55.69       114.15        72.07        26.14        38.60 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FZ TCGA-C8-A12L TCGA-C8-A12O 
       18.64        23.51         9.63        18.87        11.93        12.66 
TCGA-C8-A12P TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A130 TCGA-C8-A1HJ TCGA-C8-A1HK 
       11.77        12.66        12.66         3.16         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A26Z TCGA-D8-A13Z TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1J8 
       12.33         8.28        20.88        14.17        19.20        14.17 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1XD TCGA-D8-A1XJ 
       15.78        18.15        20.09        19.40        17.16        21.80 
TCGA-D8-A1XK TCGA-D8-A1XU TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A27F TCGA-D8-A27M 
       14.50        12.99        15.32        15.52        16.04        13.48 
TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27W TCGA-D8-A3Z6 TCGA-E2-A107 TCGA-E2-A109 
        4.80        10.09        12.26        18.51        34.42        46.59 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R 
       37.51        40.11        47.15        44.68        40.96        38.60 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15G TCGA-E2-A15O 
       63.62        69.96        14.79        23.34        18.21        50.79 
TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1LH 
       14.07        76.57        33.73        33.70        60.99       106.75 
TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 
      102.61        43.04        26.99         8.28        34.92        38.76 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NF 
       22.29        34.16        36.20        36.56        39.55        35.24 
TCGA-E9-A1NI TCGA-E9-A1R6 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RG TCGA-E9-A22G 
        9.86        11.15        32.09        40.24        21.27        40.73 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3QA 
       20.12         0.69        38.99        12.33        29.72        30.18 
TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC 
       28.77        22.82        29.82         7.86        19.99         6.15 
TCGA-EW-A3U0 TCGA-EW-A6SB TCGA-GI-A2C9 TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A3XL 
       17.49        24.99       109.87        75.02        70.85        69.30 
TCGA-HN-A2NL TCGA-LD-A66U TCGA-LD-A7W5 TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A5YP 
        2.60        21.24         7.10        24.95        32.75        14.79 
TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 
       22.26         2.63        15.68        19.53        12.36        19.59 
TCGA-OL-A5D7 TCGA-OL-A5RV TCGA-OL-A5RW TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA10 
       58.52        34.92        36.36        18.81        18.48        19.27 
TCGA-UL-AAZ6 TCGA-Z7-A8R5 
       17.03       108.07 

$`AMP PEAK 18(12P13.33) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SI 
        9.96         8.52        14.37        43.43        14.27        20.88 
TCGA-A1-A0SM TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R 
        7.96        18.21       143.15        18.02        78.41       121.94 
TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
       87.25        63.12       101.98        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
       99.12        24.79       114.81        92.48        88.60       107.93 
TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0D4 
       75.25        98.99       107.93        34.55        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72        89.36        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU 
       72.00        31.82        61.94        24.72        99.19        54.64 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 
       27.12        44.88        50.43        44.28        17.52        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
        8.38        49.84        20.52        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YK 
       32.55        25.28        50.47        21.90        49.48        19.33 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       48.46        23.77        23.47        60.72        22.45        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C 
       19.56        16.47        52.47       107.70        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU 
       18.15       105.34        10.59        36.23        39.65        29.98 
TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX 
       32.75        47.31        35.93        50.37         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CG 
       21.30        23.21        26.96        21.14        21.90        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13G 
       35.47        30.61        37.45        35.67        33.11        23.61 
TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A3IY 
       29.56        24.26        23.74        23.80        21.73        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SA 
       10.59        10.29        11.28        13.41        11.97        14.93 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P 
       10.72        11.05        10.29         8.75        13.02        13.02 
TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 
        1.02        53.06        29.03        31.00         1.02        17.03 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A085 
        9.99        10.98         7.99         9.99        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08I 
       13.02         0.99        38.01        28.96        33.01        12.00 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
        9.99        31.00       112.08        43.00        40.01        33.01 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09D 
       17.95        41.98        12.00         9.99        12.00        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       49.05        45.07         8.98        19.04        15.02         0.99 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD 
       19.04        13.02        21.04         0.99        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
        0.95        73.91         5.72         1.48        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO 
       40.57        86.66        90.71        60.92        87.12        74.14 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 
       22.19        24.13        25.05        14.99        19.79        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS 
       23.24        24.79        29.26        16.80        14.53        19.33 
TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       11.44        17.42        18.67        12.26         1.68         8.22 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        0.03        20.19         1.12         1.32         2.30         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ 
        0.23         0.33         0.62         2.96         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FL 
        7.36         0.33         0.33         6.44         5.65         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN 
        7.17         6.90         0.33         0.33         5.36         0.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW 
        0.30         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03M TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 
       61.35        68.75        47.87        58.95        29.13        21.40 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       26.04        37.48        22.36        21.53        50.70        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM 
       76.77        65.10        26.24        50.24        62.04        71.80 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
       99.25       108.72       106.78        90.58        98.27        64.04 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KT TCGA-AQ-A04H 
       41.62        40.57        14.73        82.62        17.79        24.79 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP 
      130.09        15.62        32.52        32.91        19.20       140.55 
TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ 
        5.26       109.02        98.93        64.83        55.86       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AL 
       65.36       133.22        83.87       125.16       101.00        97.68 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS 
       98.33        96.00        86.07        93.90        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K 
       94.29        61.28        86.53        86.43        33.73        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R 
       94.22       120.33        99.78       118.59         2.76       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24X TCGA-AR-A250 
       97.84       105.27        77.69       105.30        98.76        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       99.62        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
       20.25        86.53        54.21        66.15        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
      281.29       275.87       129.57        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RG 
      112.37        18.77       127.33        84.59       129.07        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP 
      212.25       234.28        81.17        78.02       263.28       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.48        89.46       282.90       157.41        97.48       188.68 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 
       18.35        21.47       206.86       129.70        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A401 
       58.88       101.52       139.17       170.17        37.87        85.35 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       18.84       103.63        71.15        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B7 
       81.44        40.83        39.55        39.16        81.63        84.13 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       32.02        18.21        43.53        21.70        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW 
       75.48        74.14        76.60        53.95        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       49.05        41.75        89.06        90.97        45.83        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP 
       23.44        38.01        29.98        13.91        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        38.47        67.86        70.88        16.27 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE 
       15.68        14.30         9.63        46.19        32.58        31.00 
TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       24.43        10.78        15.16        37.78        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       23.08        41.00        52.96        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HY 
        2.50        13.61        36.85        12.89        51.32        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18P 
       32.91         4.90        35.93        20.12        72.56        30.28 
TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EX 
       66.05        51.39        67.50       113.82        82.85        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 
       17.69        25.81        31.53        89.16        97.48        24.62 
TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      120.62        33.17        74.73       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A204 
       55.00        45.63       144.59        72.07        28.14        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        10.65         6.44        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 
      109.28        20.88         5.26         9.70        21.76         9.44 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y 
       11.77        11.77        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.56        13.51         1.87        12.59        12.92         4.11 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HL 
        4.08        12.33        10.92        11.34        11.28        10.42 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.95        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B 
        9.67         9.53         0.03         9.50        24.56        14.43 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ 
       33.99        12.95        13.02        12.49        13.41        19.46 
TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 
       56.81        13.25        20.58        13.97        13.48        21.14 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       17.49        16.50        55.50        18.90        12.03        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JN TCGA-D8-A1JP 
       14.01        18.97        20.09        20.12        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.73        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y1 
       16.31        16.64        15.16        43.04        16.54         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.24        14.14        17.42        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 
       48.03        16.41         1.61        13.08        12.53        33.37 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 
       21.67        16.18        12.66        25.22        43.00        27.52 
TCGA-E2-A10A TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T 
       40.41        28.44        28.87        38.24        33.17        75.98 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       43.33        34.26        32.02        31.96        69.34        18.51 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15C 
       23.24        19.43        21.04        23.87        25.05        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       17.29        20.71        21.63        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T 
        9.04        20.58        11.05        19.56        56.94        51.39 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       53.62        87.22        33.01        32.35        28.50        16.47 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.25        77.65        37.41        70.36        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 
        3.88        22.19        11.08        54.18        60.36        73.64 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LK 
       19.66        24.59        75.81        28.90        50.07         8.75 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
       34.55        43.56        30.61        34.29        17.69        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH 
       32.88        36.82        41.62        35.77        25.84        18.94 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH 
       48.23        45.01         1.12        46.65         6.58        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A248 TCGA-E9-A249 
       38.37        41.03        41.72        40.50         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X 
       24.56         9.47        38.07        32.91        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE 
       23.84        26.70         0.79        25.81        26.40        27.85 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        15.68        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        52.96        23.11        18.48        30.08 
TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH 
       18.90        13.94        10.52        14.43        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 
       55.00        52.73        25.91        22.09        34.03        10.16 
TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 
       23.51        15.22        16.77        31.30        33.21         7.40 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DI 
       59.57       216.76        79.10        83.34        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        66.38        72.03        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF 
       62.47        11.84        11.57        13.22        13.28        10.62 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       29.23        25.05        17.06        15.32        14.70        14.47 
TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U 
       16.08         7.46        14.50        17.49        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RX 
        2.10        36.30        31.99        58.62        40.08        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO 
       41.92        42.77        26.04        17.36        14.07        28.21 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       19.73        40.11         8.91        47.01        64.21        86.96 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 
        0.16         0.26         9.93        21.07        20.68        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-V7-A7HQ 
       18.87        17.39        17.26        13.94         3.81        66.84 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       11.41        52.96        29.03        15.35        16.04       107.05 

  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                           0.16                            0.03 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                         255.68                          282.90 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                         29.755                          27.320 
[1] "0.2 - 255.7 (29.8)" "0.0 - 282.9 (27.3)"
[1] "hr=" "1.1"
D18V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 18(12P13.33) MUTATED        18       17        0        2       105
  AMP PEAK 18(12P13.33) WILD-TYPE      71       68        6        4       248
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 18(12P13.33) MUTATED          59         0         44          9
  AMP PEAK 18(12P13.33) WILD-TYPE       193         2        110         20
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 18(12P13.33) MUTATED           18        4         0       4
  AMP PEAK 18(12P13.33) WILD-TYPE         47       16         1       9
D18V3, multiclass
            clus
vv           AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  STAGE I                               18                              71
  STAGE IA                              17                              68
  STAGE IB                               0                               6
  STAGE II                               2                               4
  STAGE IIA                            105                             248
  STAGE IIB                             59                             193
  STAGE III                              0                               2
  STAGE IIIA                            44                             110
  STAGE IIIB                             9                              20
  STAGE IIIC                            18                              47
  STAGE IV                               4                              16
  STAGE TIS                              0                               1
  STAGE X                                4                               9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  AMP PEAK 18(12P13.33) MUTATED    49 184  35  12
  AMP PEAK 18(12P13.33) WILD-TYPE 227 440 101  28
D18V4, multiclass
    clus
vv   AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  T1                            49                             227
  T2                           184                             440
  T3                            35                             101
  T4                            12                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  AMP PEAK 18(12P13.33) MUTATED   140  85  31  21
  AMP PEAK 18(12P13.33) WILD-TYPE 367 273  88  56
D18V5, multiclass
    clus
vv   AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  N0                           140                             367
  N1                            85                             273
  N2                            31                              88
  N3                            21                              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V6, binary
                                 cls
clus                                0   1
  AMP PEAK 18(12P13.33) MUTATED   240   5
  AMP PEAK 18(12P13.33) WILD-TYPE 649  17
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 18(12P13.33) MUTATED    240    5
  AMP PEAK 18(12P13.33) WILD-TYPE  649   17
   clus
vv  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  0                           240                             649
  1                             5                              17
[1] 2 2
[1] FALSE
D18V7, binary
                                 cls
clus                                0   1
  AMP PEAK 18(12P13.33) MUTATED   281   1
  AMP PEAK 18(12P13.33) WILD-TYPE 787  11
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 18(12P13.33) MUTATED    281    1
  AMP PEAK 18(12P13.33) WILD-TYPE  787   11
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  FEMALE                           281                             787
  MALE                               1                              11
[1] 2 2
[1] FALSE
D18V8, binary
                                 cls
clus                                0   1
  AMP PEAK 18(12P13.33) MUTATED   100 146
  AMP PEAK 18(12P13.33) WILD-TYPE 329 372
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 18(12P13.33) MUTATED    100  146
  AMP PEAK 18(12P13.33) WILD-TYPE  329  372
     clus
vv    AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  NO                            100                             329
  YES                           146                             372
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  AMP PEAK 18(12P13.33) MUTATED                            1
  AMP PEAK 18(12P13.33) WILD-TYPE                          0
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 18(12P13.33) MUTATED                             230
  AMP PEAK 18(12P13.33) WILD-TYPE                           540
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 18(12P13.33) MUTATED                               28
  AMP PEAK 18(12P13.33) WILD-TYPE                            172
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 18(12P13.33) MUTATED                     4                     2
  AMP PEAK 18(12P13.33) WILD-TYPE                   2                     7
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 18(12P13.33) MUTATED                                 10
  AMP PEAK 18(12P13.33) WILD-TYPE                               19
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 18(12P13.33) MUTATED                    1              6
  AMP PEAK 18(12P13.33) WILD-TYPE                 16             41
D18V9, multiclass
                                  clus
vv                                 AMP PEAK 18(12P13.33) MUTATED
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              230
  INFILTRATING LOBULAR CARCINOMA                              28
  MEDULLARY CARCINOMA                                          4
  METAPLASTIC CARCINOMA                                        2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            10
  MUCINOUS CARCINOMA                                           1
  OTHER  SPECIFY                                               6
                                  clus
vv                                 AMP PEAK 18(12P13.33) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     0
  INFILTRATING DUCTAL CARCINOMA                                540
  INFILTRATING LOBULAR CARCINOMA                               172
  MEDULLARY CARCINOMA                                            2
  METAPLASTIC CARCINOMA                                          7
  MIXED HISTOLOGY (PLEASE SPECIFY)                              19
  MUCINOUS CARCINOMA                                            16
  OTHER  SPECIFY                                                41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 18(12P13.33) MUTATED                                  0    13
  AMP PEAK 18(12P13.33) WILD-TYPE                                1    47
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 18(12P13.33) MUTATED                          62   178
  AMP PEAK 18(12P13.33) WILD-TYPE                       119   567
D18V11, multiclass
                                  clus
vv                                 AMP PEAK 18(12P13.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       13
  BLACK OR AFRICAN AMERICAN                                   62
  WHITE                                                      178
                                  clus
vv                                 AMP PEAK 18(12P13.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         47
  BLACK OR AFRICAN AMERICAN                                    119
  WHITE                                                        567
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V12, binary
                                 cls
clus                                0   1
  AMP PEAK 18(12P13.33) MUTATED     5 234
  AMP PEAK 18(12P13.33) WILD-TYPE  34 641
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 18(12P13.33) MUTATED      5  234
  AMP PEAK 18(12P13.33) WILD-TYPE   34  641
                        clus
vv                       AMP PEAK 18(12P13.33) MUTATED
  HISPANIC OR LATINO                                 5
  NOT HISPANIC OR LATINO                           234
                        clus
vv                       AMP PEAK 18(12P13.33) WILD-TYPE
  HISPANIC OR LATINO                                  34
  NOT HISPANIC OR LATINO                             641
[1] 2 2
[1] FALSE

Clustering(19) Variable = AMP PEAK 19(12Q15) MUTATION ANALYSIS
D19V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 19(12Q15) MUTATED   233  39
  AMP PEAK 19(12Q15) WILD-TYPE 684 108
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         272                          792 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                          39                          108 
$`AMP PEAK 19(12Q15) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SN TCGA-A2-A04R 
      129.14        42.81        48.10        13.68        39.32       121.94 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CM TCGA-A2-A0CS TCGA-A2-A0CX TCGA-A2-A0D0 
       73.84        87.25        24.79        77.19        56.81        67.33 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0SW TCGA-A2-A0T0 TCGA-A2-A0T7 
       35.05        34.29        31.82        44.88        17.52        20.75 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A25B TCGA-A2-A25E 
       21.90        21.67        23.77        17.36        42.44       105.34 
TCGA-A2-A3XW TCGA-A2-A3Y0 TCGA-A7-A0CD TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A26J 
       56.28        50.83        38.30        29.79        25.15        20.61 
TCGA-A7-A2KD TCGA-A7-A425 TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A6VX 
       22.32        14.70        13.74        17.92        14.73        10.42 
TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Z TCGA-A8-A075 
        1.02        17.98        53.06        29.03         1.02        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07W 
       53.98         9.01        18.97        10.98         8.98         9.99 
TCGA-A8-A07Z TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L 
       45.07        38.01        33.01        19.96        37.05         9.99 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A092 TCGA-A8-A09A TCGA-A8-A09C 
       31.00         0.99        33.01        30.97         9.99         1.02 
TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09X TCGA-A8-A0A1 
       50.04        45.07        33.07        25.02        14.01        12.00 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A23H TCGA-AC-A2FM TCGA-AC-A2FO 
        0.99        27.02        22.95         5.72        26.04        74.14 
TCGA-AC-A3W5 TCGA-AC-A5XU TCGA-AC-A7VB TCGA-AN-A03Y TCGA-AN-A04D TCGA-AN-A0AJ 
       16.57        14.96         8.22         0.33         1.71         9.96 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        7.46         0.16         0.33         5.65         7.96         7.00 
TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XO TCGA-AO-A03L 
        7.04         0.36         0.33         0.33        12.33        80.28 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J7 
       66.77        81.63        95.70        32.78        21.40        20.32 
TCGA-AO-A0J9 TCGA-AO-A0JD TCGA-AO-A0JM TCGA-AO-A12E TCGA-AO-A1KQ TCGA-AO-A1KS 
       53.03        72.00        71.80        57.30        61.87         0.53 
TCGA-AQ-A0Y5 TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT 
        5.65        32.91       140.55        98.33         5.26       109.02 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0U2 TCGA-AR-A1AK TCGA-AR-A1AV TCGA-AR-A24M 
       98.93        64.83        83.87       103.86        61.28       120.33 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A256 TCGA-AR-A2LN 
      105.30        32.58        98.66        89.00        93.83        38.17 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0RH TCGA-B6-A0RO 
       57.27        73.35       233.62       165.76       212.25       162.05 
TCGA-B6-A0WV TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A408 
       79.63        21.47       113.79        43.59        73.51        68.12 
TCGA-BH-A0AU TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0BA TCGA-BH-A0BG 
       62.93        39.55        39.16        70.22        37.22        61.51 
TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0C1 TCGA-BH-A0DD TCGA-BH-A0DQ 
       75.48        45.57        77.95        44.02        45.83         3.22 
TCGA-BH-A0DX TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0H7 
       70.88        14.30        44.81        24.49        30.35        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18N 
       41.00        27.25        50.79        90.84        26.66        37.74 
TCGA-BH-A18R TCGA-BH-A1EO TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1F6 
       37.55        91.99        42.28        12.00        55.69        97.48 
TCGA-BH-A1FC TCGA-BH-A1FM TCGA-BH-A208 TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FZ 
      114.15        45.63        57.83        23.51         9.63        18.87 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Z 
       11.93        11.77        12.66        12.66        12.66        12.56 
TCGA-C8-A130 TCGA-C8-A138 TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HN 
        3.16         4.08        11.34        11.28        12.03        12.95 
TCGA-C8-A1HO TCGA-C8-A26Z TCGA-C8-A278 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       12.33         8.28         9.50        56.81        20.88        13.25 
TCGA-D8-A1J8 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JP TCGA-D8-A1X9 
       14.17        15.78        18.15        18.90        21.01        23.90 
TCGA-D8-A1XD TCGA-D8-A1XL TCGA-D8-A1XU TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       17.16        19.92        12.99        16.54        15.32        15.52 
TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z6 TCGA-E2-A107 TCGA-E2-A109 
       10.09        12.53        12.26        18.51        34.42        46.59 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A14O TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14W 
       37.51        40.11        44.68        75.98        34.26        32.02 
TCGA-E2-A152 TCGA-E2-A15A TCGA-E2-A15G TCGA-E2-A15O TCGA-E2-A15S TCGA-E2-A1B5 
       69.96        23.34        18.21        50.79        14.07        32.35 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A2P5 
       33.73        33.70        60.99        73.64        24.59        26.99 
TCGA-E2-A56Z TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NF 
        8.28        38.76        17.69        22.29        36.20        35.24 
TCGA-E9-A1NI TCGA-E9-A1R6 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RF TCGA-E9-A1RG 
        9.86        11.15        32.09        40.24         6.58        21.27 
TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A2JS 
       41.03        40.73         0.69        38.99        12.33        29.72 
TCGA-E9-A54Y TCGA-E9-A5UO TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1P5 
       23.84        25.81        28.77        22.82        29.85        23.11 
TCGA-EW-A1PD TCGA-EW-A2FV TCGA-EW-A6SA TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DH 
       13.94        25.91        16.77       109.87        59.57        72.10 
TCGA-GM-A2DK TCGA-HN-A2NL TCGA-LD-A66U TCGA-LD-A7W5 TCGA-LL-A440 TCGA-LL-A5YM 
       86.96         2.60        21.24         7.10        24.95        15.32 
TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-OL-A5RV 
       22.26         2.63        14.50        19.53        12.36        34.92 
TCGA-OL-A5RW TCGA-OL-A66O TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-UL-AAZ6 
       36.36        17.36        18.81        18.48        19.27        17.03 
TCGA-XX-A899 TCGA-Z7-A8R5 
       15.35       108.07 

$`AMP PEAK 19(12Q15) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      131.67        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
        8.52        14.37        43.43        14.27        47.24        20.88 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N 
       31.79         7.96        28.01        19.20        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
       18.02        78.41        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12       114.81        92.48        88.60       107.93 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D1 TCGA-A2-A0D2 
       75.25         5.19        98.99       107.93        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       61.58        25.22       101.72        89.36        80.28       118.45 
TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       79.76        74.40        72.00        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       99.19        54.64        27.12        50.43        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
        8.38        49.84        20.52        17.46        18.90        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       25.28        18.21        50.47        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       48.46        31.73        23.47        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C 
       19.20        19.56        16.47        52.47       107.70        17.19 
TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
       18.15        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW 
       29.98        32.75        47.31        35.93        50.37         7.30 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 
       24.39        21.30        23.21        26.96        21.14        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA 
       35.31        34.29        35.47        30.61        37.45        35.67 
TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E 
       33.11        31.73        20.19        23.61        29.56        31.36 
TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A3IY TCGA-A7-A3IZ 
       24.26        23.74        23.80        21.73        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SD 
       10.29        11.28        13.41        11.97        14.93        14.50 
TCGA-A7-A4SE TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW 
       21.17        12.10        10.72        11.05        10.29         9.37 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A07B 
        8.75        13.02        13.02        31.00        26.01        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       19.99        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        7.99        24.99        15.06        36.95        13.02         0.99 
TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       28.96        12.00        31.00       112.08        43.00        40.01 
TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09B 
       33.01        17.95        41.98        12.00         9.99        12.00 
TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       49.05        29.98         1.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-A8-A0AD 
        0.99        19.04        13.02        21.04        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
        0.95        73.91         1.48        73.05        99.35        40.57 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2QH TCGA-AC-A2QI 
       86.66        90.71        60.92        87.12        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI 
       24.13        25.05        14.99        19.79        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62V 
       24.79        29.26        16.80        14.53        19.33        11.44 
TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO 
       13.71        17.42        18.67        13.58        12.26         1.68 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        0.03        20.19         1.12         1.32         2.30         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AK 
        0.23         0.33         0.62         2.96         1.78         7.36 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        0.33         0.33         6.44         7.59         7.17         6.90 
TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XP TCGA-AN-A0XR 
        0.33         0.33         5.36         0.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M 
        0.33         0.33         0.33         5.33         5.59        61.35 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J5 
       68.75        47.87        58.95        29.13        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE 
       37.48        22.36        21.53        50.70        50.86        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A124 
       65.10        26.24        50.24        62.04        55.33       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       99.25       108.72       106.78       108.03        90.58        98.27 
TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       64.04        48.36        41.62        40.57        14.73        82.62 
TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 
       70.39        17.79        24.79        26.93       130.09        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TY 
       32.52         2.56        19.20        84.10        75.22        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
      107.24        65.36       133.22       134.14       107.21       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO 
      108.36       101.00        97.68        98.33        96.00        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AW 
       93.90        99.32        17.23        37.81        94.29        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24N 
       86.43        33.73       160.90        50.89        94.22        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
      118.59         2.76       104.28       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       77.69        98.76        99.62        93.30        85.64        71.05 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      166.42        20.25        86.53        54.21        66.15        63.62 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      143.38       281.29        12.13       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
       65.72       146.50       112.37        18.77       127.33        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RL 
      129.07       140.88       255.68        68.45       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT 
       78.02       263.28       102.77       140.48       100.70        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WZ 
      282.90       157.41        97.48       188.68        18.35       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF 
      129.70       245.10        28.27        68.94        58.88       101.52 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        70.16 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
       18.84       103.63        71.15        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 
       63.09        81.44        40.83        81.63        84.13        51.68 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       32.02        18.21        43.53        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BZ 
       72.23        74.14        76.60        53.95        49.94        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       41.75        89.06        90.97        77.98        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS 
       29.98        13.91        78.28        17.26        15.65         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E6 
       38.47        67.86        16.27         4.41        15.68         9.63 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 
       46.19        32.58        31.00        24.43        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       37.78        53.26        24.56        52.96        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18P 
       32.91         4.90        35.93        20.12        72.56        30.28 
TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       55.63        66.05         7.36        51.39        51.16        67.50 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
      113.82        82.85        49.58        17.69        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       89.16        24.62       120.62        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       36.92        63.35        55.00        72.07       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O 
       28.14        26.14        38.60        83.31       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
        6.44        20.12        10.52       109.28        20.88        18.64 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12P 
        5.26         9.70        21.76         9.44        11.77        11.77 
TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A131 TCGA-C8-A132 
       12.66        12.66        12.66        48.53        13.51         1.87 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HJ 
       12.59        12.92         4.11        12.33        10.92         0.16 
TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       10.42        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
        9.67         9.53         0.03        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A141 
       12.95        13.02        12.49        13.41        19.46        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J9 
       13.97        14.17        13.48        21.14        19.20        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       16.50        55.50        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS 
       20.09        20.12        20.09        19.40        20.38        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.80 
TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       14.50        17.69        55.30        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.64        15.16        43.04         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A3Z5 
       16.41        13.48         4.80         1.61        13.08        33.37 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 
       21.67        16.18        12.66        25.22        43.00        27.52 
TCGA-E2-A10A TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14Q 
       40.41        28.44        28.87        47.15        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       38.60        33.17        43.33        31.96        69.34        18.51 
TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       63.62        23.24        19.43        21.04        23.87        14.79 
TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H 
       25.05        22.82        17.29        20.71        21.63        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       56.94        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        37.25        77.65        37.41        70.36 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 
       28.44        59.18         3.88        22.19        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH 
       60.36        19.66        75.81        28.90        50.07       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 
      102.61         8.75        43.04        34.55        43.56        30.61 
TCGA-E2-A573 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        34.29        34.82        32.88        36.82        34.16 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH 
       36.56        39.55        41.62        35.77        25.84        18.94 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RH TCGA-E9-A1RI 
       48.23        45.01         1.12        46.65        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       41.72        40.50        20.12         1.94         7.13        24.56 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        26.40        27.85        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
        8.48        18.21        18.90        13.25        16.57        15.68 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 
       25.94        29.95        40.41        41.13        39.78        52.96 
TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       29.82        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        10.52        14.43        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 
       52.73        22.09        34.03        17.49        10.16        23.51 
TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GM-A2DA 
       15.22        24.99        31.30        33.21         7.40       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DL 
       79.10        83.34        75.02        70.85        85.15       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB 
       69.30        66.38        72.03        13.55        18.12        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A441 
       11.84        11.57        13.22        13.28        10.62        32.75 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP 
       29.23        25.05        17.06        14.70        14.47        14.79 
TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       16.08        15.68         7.46        19.59        17.49        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       40.08        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66P 
       23.47        65.62        41.92        42.77        26.04        14.07 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD 
       28.21        19.73        40.11         8.91        47.01        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA0Z 
       86.96         0.16         0.26         9.93        21.07        20.68 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S 
       13.84        18.87        17.39        17.26        13.94         3.81 
TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R6 
       66.84        11.41        52.96        29.03        16.04       107.05 

  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                        0.16                         0.03 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                      233.62                       282.90 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                      25.975                       28.270 
[1] "0.2 - 233.6 (26.0)" "0.0 - 282.9 (28.3)"
[1] "hr=" "1.2"
D19V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 19(12Q15) MUTATED        20       17        0        1        86
  AMP PEAK 19(12Q15) WILD-TYPE      69       68        6        5       267
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 19(12Q15) MUTATED          61         0         51         11
  AMP PEAK 19(12Q15) WILD-TYPE       191         2        103         18
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 19(12Q15) MUTATED           19        5         0       3
  AMP PEAK 19(12Q15) WILD-TYPE         46       15         1      10
D19V3, multiclass
            clus
vv           AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  STAGE I                            20                           69
  STAGE IA                           17                           68
  STAGE IB                            0                            6
  STAGE II                            1                            5
  STAGE IIA                          86                          267
  STAGE IIB                          61                          191
  STAGE III                           0                            2
  STAGE IIIA                         51                          103
  STAGE IIIB                         11                           18
  STAGE IIIC                         19                           46
  STAGE IV                            5                           15
  STAGE TIS                           0                            1
  STAGE X                             3                           10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  AMP PEAK 19(12Q15) MUTATED    55 174  31  15
  AMP PEAK 19(12Q15) WILD-TYPE 221 450 105  25
D19V4, multiclass
    clus
vv   AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  T1                         55                          221
  T2                        174                          450
  T3                         31                          105
  T4                         15                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  AMP PEAK 19(12Q15) MUTATED   115  88  44  22
  AMP PEAK 19(12Q15) WILD-TYPE 392 270  75  55
D19V5, multiclass
    clus
vv   AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  N0                        115                          392
  N1                         88                          270
  N2                         44                           75
  N3                         22                           55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V6, binary
                              cls
clus                             0   1
  AMP PEAK 19(12Q15) MUTATED   237   5
  AMP PEAK 19(12Q15) WILD-TYPE 652  17
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(12Q15) MUTATED    237    5
  AMP PEAK 19(12Q15) WILD-TYPE  652   17
   clus
vv  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  0                        237                          652
  1                          5                           17
[1] 2 2
[1] FALSE
D19V7, binary
                              cls
clus                             0   1
  AMP PEAK 19(12Q15) MUTATED   268   8
  AMP PEAK 19(12Q15) WILD-TYPE 800   4
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(12Q15) MUTATED    268    8
  AMP PEAK 19(12Q15) WILD-TYPE  800    4
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  FEMALE                        268                          800
  MALE                            8                            4
[1] 2 2
[1] FALSE
D19V8, binary
                              cls
clus                             0   1
  AMP PEAK 19(12Q15) MUTATED   115 129
  AMP PEAK 19(12Q15) WILD-TYPE 314 389
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(12Q15) MUTATED    115  129
  AMP PEAK 19(12Q15) WILD-TYPE  314  389
     clus
vv    AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  NO                         115                          314
  YES                        129                          389
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  AMP PEAK 19(12Q15) MUTATED                            0
  AMP PEAK 19(12Q15) WILD-TYPE                          1
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 19(12Q15) MUTATED                             224
  AMP PEAK 19(12Q15) WILD-TYPE                           546
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 19(12Q15) MUTATED                               34
  AMP PEAK 19(12Q15) WILD-TYPE                            166
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 19(12Q15) MUTATED                     1                     1
  AMP PEAK 19(12Q15) WILD-TYPE                   5                     8
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 19(12Q15) MUTATED                                  9
  AMP PEAK 19(12Q15) WILD-TYPE                               20
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 19(12Q15) MUTATED                    2              5
  AMP PEAK 19(12Q15) WILD-TYPE                 15             42
D19V9, multiclass
                                  clus
vv                                 AMP PEAK 19(12Q15) MUTATED
  INFILTRATING CARCINOMA NOS                                0
  INFILTRATING DUCTAL CARCINOMA                           224
  INFILTRATING LOBULAR CARCINOMA                           34
  MEDULLARY CARCINOMA                                       1
  METAPLASTIC CARCINOMA                                     1
  MIXED HISTOLOGY (PLEASE SPECIFY)                          9
  MUCINOUS CARCINOMA                                        2
  OTHER  SPECIFY                                            5
                                  clus
vv                                 AMP PEAK 19(12Q15) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             546
  INFILTRATING LOBULAR CARCINOMA                            166
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       8
  MIXED HISTOLOGY (PLEASE SPECIFY)                           20
  MUCINOUS CARCINOMA                                         15
  OTHER  SPECIFY                                             42
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 19(12Q15) MUTATED                                  0    16
  AMP PEAK 19(12Q15) WILD-TYPE                                1    44
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 19(12Q15) MUTATED                          51   170
  AMP PEAK 19(12Q15) WILD-TYPE                       130   575
D19V11, multiclass
                                  clus
vv                                 AMP PEAK 19(12Q15) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                    16
  BLACK OR AFRICAN AMERICAN                                51
  WHITE                                                   170
                                  clus
vv                                 AMP PEAK 19(12Q15) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      44
  BLACK OR AFRICAN AMERICAN                                 130
  WHITE                                                     575
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V12, binary
                              cls
clus                             0   1
  AMP PEAK 19(12Q15) MUTATED     6 213
  AMP PEAK 19(12Q15) WILD-TYPE  33 662
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(12Q15) MUTATED      6  213
  AMP PEAK 19(12Q15) WILD-TYPE   33  662
                        clus
vv                       AMP PEAK 19(12Q15) MUTATED
  HISPANIC OR LATINO                              6
  NOT HISPANIC OR LATINO                        213
                        clus
vv                       AMP PEAK 19(12Q15) WILD-TYPE
  HISPANIC OR LATINO                               33
  NOT HISPANIC OR LATINO                          662
[1] 2 2
[1] FALSE

Clustering(20) Variable = AMP PEAK 20(13Q34) MUTATION ANALYSIS
D20V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 20(13Q34) MUTATED   154  22
  AMP PEAK 20(13Q34) WILD-TYPE 763 125
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         176                          888 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                          22                          125 
$`AMP PEAK 20(13Q34) MUTATED`
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A0D0 TCGA-A2-A0D2 
       13.68        31.79        28.01        73.84        67.33        33.76 
TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SX TCGA-A2-A0T0 
       79.76        35.05        63.29        99.19        50.43        17.52 
TCGA-A2-A0T7 TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XT 
       20.75        18.61        31.73        19.20        33.93        91.07 
TCGA-A2-A3Y0 TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A26F TCGA-A7-A3J0 
       50.83        35.31        35.67        31.73        24.26        10.29 
TCGA-A7-A4SD TCGA-A8-A07I TCGA-A8-A07R TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
       14.50        14.01         8.98        19.96        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A09C TCGA-A8-A09M 
        9.99        33.01        41.98        12.00         1.02        33.07 
TCGA-A8-A0AB TCGA-AC-A2B8 TCGA-AC-A2FM TCGA-AC-A3OD TCGA-AC-A3W5 TCGA-AC-A8OP 
       17.03         1.48        26.04        14.83        16.57        20.19 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AM 
        0.33         0.23         1.78         1.71         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0FJ TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        0.33         7.96         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XO TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03U 
        0.33         0.33        12.33         0.33         0.33        58.95 
TCGA-AO-A0J7 TCGA-AO-A0JB TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       20.32        50.70       115.27       108.03        90.58        98.27 
TCGA-AO-A12D TCGA-AQ-A04J TCGA-AR-A0TP TCGA-AR-A0TT TCGA-AR-A0U3 TCGA-AR-A1AN 
       64.04        26.93       140.55       109.02       134.14        96.00 
TCGA-AR-A1AW TCGA-AR-A24H TCGA-AR-A24U TCGA-AR-A256 TCGA-AR-A2LR TCGA-B6-A0IB 
       86.53       160.90        77.69        93.83        57.27       129.57 
TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RO TCGA-B6-A0RS 
      233.62       165.76       255.68        68.45       162.05       100.70 
TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A3ZX TCGA-B6-A400 TCGA-BH-A0AV 
      282.90        79.63       113.79        37.87         7.07        59.84 
TCGA-BH-A0B9 TCGA-BH-A0BT TCGA-BH-A0C7 TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0EB 
       51.68        45.57        90.97         4.41        14.30        24.49 
TCGA-BH-A0HQ TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18V TCGA-BH-A1EX TCGA-BH-A1FM 
       36.85        37.74        55.63        51.16        49.58        45.63 
TCGA-BH-A1FN TCGA-BH-A208 TCGA-BH-A5IZ TCGA-BH-A6R9 TCGA-C8-A12L TCGA-C8-A12M 
       72.07        57.83        18.64         5.26        11.93        11.77 
TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A26Y TCGA-C8-A275 TCGA-C8-A27B TCGA-D8-A141 
       13.51        12.59        12.95         0.03        14.43        20.58 
TCGA-D8-A143 TCGA-D8-A1JF TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1XF TCGA-D8-A1XJ 
       14.17        12.03        20.09        20.09        15.22        21.80 
TCGA-D8-A1XQ TCGA-D8-A1XW TCGA-D8-A27H TCGA-D8-A27M TCGA-D8-A27R TCGA-D8-A27W 
       16.41        43.04        13.05        13.48        10.09        12.26 
TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A154 
       40.96        38.60        75.98        31.96        69.34        19.43 
TCGA-E2-A158 TCGA-E2-A15E TCGA-E2-A15I TCGA-E2-A1BD TCGA-E2-A1L9 TCGA-E2-A1LE 
       14.79        20.71        55.63        37.25        19.66        28.90 
TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 
       50.07       106.75       102.61         8.28        34.92        38.76 
TCGA-E9-A1N8 TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1R2 TCGA-E9-A1R3 
       34.16        41.62        35.24         9.86        34.95         2.56 
TCGA-E9-A1RF TCGA-E9-A22G TCGA-E9-A248 TCGA-E9-A3HO TCGA-E9-A5FL TCGA-EW-A1J6 
        6.58        40.73         1.94        38.07         0.79        28.77 
TCGA-EW-A1P0 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A423 
       41.13        30.08        19.99        25.91        17.49        10.16 
TCGA-EW-A6SA TCGA-GI-A2C9 TCGA-GM-A2DF TCGA-GM-A3NW TCGA-HN-A2NL TCGA-JL-A3YW 
       16.77       109.87        70.85       110.50         2.60        11.84 
TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-MS-A51U TCGA-S3-A6ZG 
       11.57         7.10         2.63        15.68        22.39        18.48 
TCGA-S3-AA10 TCGA-UU-A93S 
       19.27         3.81 

$`AMP PEAK 20(13Q34) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF 
       48.36         9.96         8.52        14.37        43.43        48.10 
TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP 
       14.27        47.24        20.88         7.96        39.32        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U 
       18.21       143.15        18.02        78.41       121.94        87.25 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       24.79       114.81        92.48        88.60       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 
       75.25         5.19        98.99       107.93        56.81        34.55 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       61.58        25.22       101.72        89.36        80.28       118.45 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       74.40        72.00        34.29        31.82        61.94        24.72 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 
       54.64        27.12        44.88        44.28        17.13         8.38 
TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD 
       49.84        20.52        17.46        18.90        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK 
       18.21        50.47        21.90        21.67        49.48        19.33 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       48.46        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       20.25        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H 
       33.11        29.79        20.19        25.15        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD 
       31.36        23.74        23.80        21.73        20.61        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       11.34        10.59        11.28        13.41        14.70        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.93        13.74        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U 
       13.02        13.02         1.02        17.98        53.06        29.03 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07L 
       43.00        19.99        18.97        18.97        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         7.99        24.99         9.99        45.07 
TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       15.06        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08F TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T 
       33.01        31.00        31.00         0.99        33.01       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A099 TCGA-A8-A09A 
       43.00        40.01        30.97        17.95         9.99         9.99 
TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09N 
       12.00        50.04        49.05        45.07        29.98         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2BK 
       38.04         0.95        22.95        73.91         5.72        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 
       16.31        22.19        24.13        25.05        14.99        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI 
       15.48        23.24        24.79        29.26        16.80        14.53 
TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV 
       19.33        14.96        11.44        13.71        17.42        18.67 
TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ 
       13.58        12.26         1.68         8.22         0.03         1.12 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
        1.32         2.30         0.33         0.33         0.62         2.96 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        9.96         7.36         0.33         0.33         6.44         5.65 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0XL TCGA-AN-A0XN 
        7.00         7.59         7.17         6.90         5.36         0.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.30         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        47.87 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       29.13        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       22.36        53.03        21.53        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       65.10        26.24        50.24        62.04        55.33        71.80 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
       99.25       108.72       106.78        57.30        48.36        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
       40.57        14.73        82.62        61.87        70.39         0.53 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       17.79        24.79       130.09         5.65        15.62        32.52 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS 
        2.56        32.91        19.20        98.33         5.26        84.10 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
       75.22        98.93        64.83        55.86       107.24        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22        83.87       107.21       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
      103.86        97.68        98.33        86.07        93.90        99.32 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY 
       17.23        37.81        94.29        61.28        86.43        33.73 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A24W 
      104.28       112.77        97.84       105.27       105.30        32.58 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL 
       71.05       166.42        20.25        86.53        54.21        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN 
       63.62        38.17        39.39        40.54        73.35        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 
       38.96        10.59        77.62       143.38       281.29        12.13 
TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK 
      275.87        50.70        65.72       146.50       112.37        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RH TCGA-B6-A0RI 
      127.33        84.59       129.07       140.88       212.25       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
       81.17        78.02       263.28       102.77       140.48        89.46 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ 
      157.41        97.48       188.68        18.35        21.47       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.88        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 
      101.52        73.51       139.17       170.17        85.35        70.16 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW 
       68.12        18.84       103.63        71.15        62.93        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        40.83        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       70.22        81.63        84.13        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       43.53        61.51        21.70        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW 
       75.48        74.14        76.60        53.95        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE 
       49.05        41.75        44.02        89.06        45.83        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       23.44        38.01        29.98        13.91        78.28        17.26 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        38.47        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       16.27        15.68         9.63        44.81        46.19        32.58 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW 
       20.38         5.85         2.50        13.61        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S 
       90.84        26.66        72.56        30.28        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
        7.36        51.39        67.50        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        12.00        55.69        17.69        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       89.16        97.48        24.62       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR 
       74.73       122.89        36.92        63.35        55.00       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 
       72.07        28.14        26.14        38.60        83.31       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28        20.88 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
       23.51         9.63         9.70        18.87        21.76         9.44 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A132 
       12.66        12.66        48.53        12.56         3.16         1.87 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92         4.11         4.08        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN 
       11.28         0.16        12.03        10.42        12.33        12.95 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 
       12.33        20.25        12.53        12.36         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.53         9.50        24.56        33.99        12.95        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       12.49        13.41        19.46        56.81        20.88        13.25 
TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.97        13.48        21.14        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG 
       16.50        55.50        15.78        18.15        18.90        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       14.01        18.97        20.12        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       25.74        23.90        27.58        18.15        12.39        17.16 
TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR 
       14.73        14.50        19.92        17.69        55.30        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.31        16.64        12.99        15.16        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P 
       13.45        14.43        48.03        16.41         4.80         1.61 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       13.08        12.53        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       12.66        25.22        43.00        34.42        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       40.41        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       44.68        38.24        33.17        43.33        34.26        32.02 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 
       18.51        63.62        69.96        23.24        21.04        23.87 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G 
       25.05        23.34        22.82        17.29        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O 
       12.92        53.92         9.04        20.58        11.05        50.79 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       19.56        56.94        14.07        51.39        76.57        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE 
       87.22        33.01        32.35        28.50        16.47        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        70.36        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 
       73.64        24.59        75.81         8.75        43.04        26.99 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
       34.55        43.56        30.61        34.29        17.69        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        22.29        36.20        36.56        39.55 
TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R4 
       35.77        25.84        18.94        24.82        28.27         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
        1.12        46.65        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A249 
       41.72        40.50        20.12         0.69        38.99         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA 
       24.56        12.33        29.72         9.47        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP 
       30.44        23.90        23.84        26.70        25.81        26.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       27.85        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       13.25        16.57        15.68        25.94        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        39.78        52.96        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
       18.48         7.86        18.90         6.15        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW 
       14.43        34.55        19.96        55.00        52.73        22.09 
TCGA-EW-A3E8 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD 
       34.03        23.51        15.22        24.99        31.30        33.21 
TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD 
        7.40        59.57       216.76        79.10        83.34        75.02 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
       85.35        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 
       13.55        18.12        62.47        21.24        13.22        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       10.62        24.95        32.75        29.23        25.05        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR 
       15.32        14.70        14.47        14.79        22.26        16.08 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 
        7.46        14.50        19.53        12.36        19.59        17.49 
TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       27.91         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       40.08        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       20.38        26.70        23.47        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       26.04        17.36        14.07        28.21        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY 
        8.91        47.01        64.21        86.96         0.16         0.26 
TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 
        9.93        18.81        21.07        20.68        13.84        18.87 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-W8-A86G 
       17.39        17.26        13.94        17.03        66.84        11.41 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       108.07       107.05 

  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                        0.03                         0.03 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                      282.90                       281.29 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                      25.975                       28.175 
[1] "0.0 - 282.9 (26.0)" "0.0 - 281.3 (28.2)"
[1] "hr=" "1.2"
D20V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 20(13Q34) MUTATED         7       11        0        1        77
  AMP PEAK 20(13Q34) WILD-TYPE      82       74        6        5       276
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 20(13Q34) MUTATED          37         0         24          4
  AMP PEAK 20(13Q34) WILD-TYPE       215         2        130         25
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 20(13Q34) MUTATED           10        5         0       2
  AMP PEAK 20(13Q34) WILD-TYPE         55       15         1      11
D20V3, multiclass
            clus
vv           AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  STAGE I                             7                           82
  STAGE IA                           11                           74
  STAGE IB                            0                            6
  STAGE II                            1                            5
  STAGE IIA                          77                          276
  STAGE IIB                          37                          215
  STAGE III                           0                            2
  STAGE IIIA                         24                          130
  STAGE IIIB                          4                           25
  STAGE IIIC                         10                           55
  STAGE IV                            5                           15
  STAGE TIS                           0                            1
  STAGE X                             2                           11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  AMP PEAK 20(13Q34) MUTATED    30 124  18   6
  AMP PEAK 20(13Q34) WILD-TYPE 246 500 118  34
D20V4, multiclass
    clus
vv   AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  T1                         30                          246
  T2                        124                          500
  T3                         18                          118
  T4                          6                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  AMP PEAK 20(13Q34) MUTATED    97  50  19  13
  AMP PEAK 20(13Q34) WILD-TYPE 410 308 100  64
D20V5, multiclass
    clus
vv   AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  N0                         97                          410
  N1                         50                          308
  N2                         19                          100
  N3                         13                           64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V6, binary
                              cls
clus                             0   1
  AMP PEAK 20(13Q34) MUTATED   159   5
  AMP PEAK 20(13Q34) WILD-TYPE 730  17
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(13Q34) MUTATED    159    5
  AMP PEAK 20(13Q34) WILD-TYPE  730   17
   clus
vv  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  0                        159                          730
  1                          5                           17
[1] 2 2
[1] FALSE
D20V7, binary
                              cls
clus                             0   1
  AMP PEAK 20(13Q34) MUTATED   178   1
  AMP PEAK 20(13Q34) WILD-TYPE 890  11
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(13Q34) MUTATED    178    1
  AMP PEAK 20(13Q34) WILD-TYPE  890   11
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  FEMALE                        178                          890
  MALE                            1                           11
[1] 2 2
[1] FALSE
D20V8, binary
                              cls
clus                             0   1
  AMP PEAK 20(13Q34) MUTATED    84  75
  AMP PEAK 20(13Q34) WILD-TYPE 345 443
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(13Q34) MUTATED     84   75
  AMP PEAK 20(13Q34) WILD-TYPE  345  443
     clus
vv    AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  NO                          84                          345
  YES                         75                          443
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  AMP PEAK 20(13Q34) MUTATED                            0
  AMP PEAK 20(13Q34) WILD-TYPE                          1
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 20(13Q34) MUTATED                             146
  AMP PEAK 20(13Q34) WILD-TYPE                           624
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 20(13Q34) MUTATED                               14
  AMP PEAK 20(13Q34) WILD-TYPE                            186
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 20(13Q34) MUTATED                     1                     3
  AMP PEAK 20(13Q34) WILD-TYPE                   5                     6
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 20(13Q34) MUTATED                                  4
  AMP PEAK 20(13Q34) WILD-TYPE                               25
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 20(13Q34) MUTATED                    2              9
  AMP PEAK 20(13Q34) WILD-TYPE                 15             38
D20V9, multiclass
                                  clus
vv                                 AMP PEAK 20(13Q34) MUTATED
  INFILTRATING CARCINOMA NOS                                0
  INFILTRATING DUCTAL CARCINOMA                           146
  INFILTRATING LOBULAR CARCINOMA                           14
  MEDULLARY CARCINOMA                                       1
  METAPLASTIC CARCINOMA                                     3
  MIXED HISTOLOGY (PLEASE SPECIFY)                          4
  MUCINOUS CARCINOMA                                        2
  OTHER  SPECIFY                                            9
                                  clus
vv                                 AMP PEAK 20(13Q34) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             624
  INFILTRATING LOBULAR CARCINOMA                            186
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       6
  MIXED HISTOLOGY (PLEASE SPECIFY)                           25
  MUCINOUS CARCINOMA                                         15
  OTHER  SPECIFY                                             38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 20(13Q34) MUTATED                                  0    11
  AMP PEAK 20(13Q34) WILD-TYPE                                1    49
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 20(13Q34) MUTATED                          35   120
  AMP PEAK 20(13Q34) WILD-TYPE                       146   625
D20V11, multiclass
                                  clus
vv                                 AMP PEAK 20(13Q34) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                    11
  BLACK OR AFRICAN AMERICAN                                35
  WHITE                                                   120
                                  clus
vv                                 AMP PEAK 20(13Q34) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      49
  BLACK OR AFRICAN AMERICAN                                 146
  WHITE                                                     625
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V12, binary
                              cls
clus                             0   1
  AMP PEAK 20(13Q34) MUTATED     7 150
  AMP PEAK 20(13Q34) WILD-TYPE  32 725
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(13Q34) MUTATED      7  150
  AMP PEAK 20(13Q34) WILD-TYPE   32  725
                        clus
vv                       AMP PEAK 20(13Q34) MUTATED
  HISPANIC OR LATINO                              7
  NOT HISPANIC OR LATINO                        150
                        clus
vv                       AMP PEAK 20(13Q34) WILD-TYPE
  HISPANIC OR LATINO                               32
  NOT HISPANIC OR LATINO                          725
[1] 2 2
[1] FALSE

Clustering(21) Variable = AMP PEAK 21(14Q21.1) MUTATION ANALYSIS
D21V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 21(14Q21.1) MUTATED   188  31
  AMP PEAK 21(14Q21.1) WILD-TYPE 729 116
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           219                            845 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                            31                            116 
$`AMP PEAK 21(14Q21.1) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04W TCGA-A2-A0CW 
      131.67        42.81        39.32        28.01       101.98       107.93 
TCGA-A2-A0D4 TCGA-A2-A0SW TCGA-A2-A0T3 TCGA-A2-A0YH TCGA-A2-A1FW TCGA-A2-A25B 
       25.22        44.88        49.84        21.67        17.36        42.44 
TCGA-A2-A25C TCGA-A2-A3KD TCGA-A2-A4RX TCGA-A2-A4S3 TCGA-A7-A0CJ TCGA-A7-A0DA 
       17.19        39.65        24.39        21.90        30.61        35.67 
TCGA-A7-A0DB TCGA-A7-A4SA TCGA-A7-A56D TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06R 
       33.11        14.93        14.73        10.42        13.02        17.98 
TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A08B 
       31.00        17.03        53.98         8.98         9.99        38.01 
TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08X 
       33.01        12.00        31.00        31.00        33.01        43.00 
TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09C 
       33.01        30.97        41.98        12.00         9.99         1.02 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09R TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A2 
       50.04        33.07         8.98         0.99        14.01        19.04 
TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A2FM TCGA-AC-A5EI TCGA-AC-A62V TCGA-AC-A62Y 
       27.02        22.95        26.04        14.53        11.44        17.42 
TCGA-AC-A7VB TCGA-AN-A04A TCGA-AN-A0AM TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ 
        8.22         2.96         0.16         0.36         0.33         0.33 
TCGA-AN-A0XN TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A0J2 
        0.33        80.28        66.77        81.63        95.70        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J7 TCGA-AO-A0JE TCGA-AO-A0JM TCGA-AO-A1KS TCGA-AQ-A0Y5 
       21.40        20.32        76.77        71.80         0.53         5.65 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U4 TCGA-AR-A1AP 
       98.33         5.26        75.22        98.93       107.21        93.90 
TCGA-AR-A1AW TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24R TCGA-AR-A250 TCGA-AR-A2LK 
       86.53        50.89       120.33       112.77        89.00        54.21 
TCGA-AR-A5QM TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0RO TCGA-B6-A0RS 
       73.35       281.29        12.13       129.57       162.05       100.70 
TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A1KN 
      282.90        79.63        18.35       113.79       206.86       139.17 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0B4 TCGA-BH-A0BA TCGA-BH-A0BC 
       85.35        70.16        68.12        39.16        37.22        32.02 
TCGA-BH-A0BL TCGA-BH-A0BT TCGA-BH-A0DG TCGA-BH-A0DL TCGA-BH-A0DS TCGA-BH-A0E9 
       74.89        45.57        23.44        78.28         2.56        46.19 
TCGA-BH-A0EE TCGA-BH-A0HI TCGA-BH-A0HX TCGA-BH-A0W7 TCGA-BH-A18K TCGA-BH-A18L 
       31.00        20.38        27.25        44.81        90.84        26.66 
TCGA-BH-A1EN TCGA-BH-A1EV TCGA-BH-A1F2 TCGA-BH-A1FM TCGA-BH-A1FU TCGA-BH-A5J0 
       67.50        12.00        31.53        45.63        72.07        23.51 
TCGA-BH-A6R9 TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12U TCGA-C8-A12W 
        5.26        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A138 TCGA-C8-A1HI TCGA-C8-A273 TCGA-C8-A27A 
        3.16         1.87         4.08        11.28         9.67        24.56 
TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1JD 
       20.88        20.58        14.17        21.14        14.17        18.15 
TCGA-D8-A1JF TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XF 
       12.03        20.12        20.09        18.58        23.90        15.22 
TCGA-D8-A1XL TCGA-D8-A1XU TCGA-D8-A1XZ TCGA-D8-A27R TCGA-D8-A27W TCGA-D8-A3Z6 
       19.92        12.99        15.32        10.09        12.26        18.51 
TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A14P TCGA-E2-A14V TCGA-E2-A14Z TCGA-E2-A152 
       46.59        40.11        40.96        34.26        18.51        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15I TCGA-E2-A15K 
       23.24        19.43        23.34        20.71        55.63         9.04 
TCGA-E2-A1IH TCGA-E2-A1IO TCGA-E2-A1L9 TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A2P5 
       33.73        60.99        19.66        50.07       106.75        26.99 
TCGA-E2-A56Z TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NF 
        8.28        17.69        36.82        22.29        36.56        35.24 
TCGA-E9-A1NI TCGA-E9-A1R4 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF 
        9.86         6.12        32.09        40.24        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A226 TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A244 TCGA-E9-A247 
       21.27        34.45        41.03        41.72         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
        1.94        12.33        29.72        23.84        26.70         0.79 
TCGA-E9-A5UP TCGA-EW-A1IY TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1PC 
       26.40         8.48        29.85        40.41        52.96         6.15 
TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A6SA TCGA-EW-A6SD 
       34.55        52.73        25.91        17.49        16.77        33.21 
TCGA-GM-A2DB TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-MS-A51U 
       79.10        15.32        14.70        14.47         2.63        22.39 
TCGA-OL-A5RW TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-S3-A6ZF TCGA-S3-A6ZG 
       36.36        40.11         8.91        47.01        18.81        18.48 
TCGA-UL-AAZ6 TCGA-WT-AB44 TCGA-Z7-A8R6 
       17.03        29.03       107.05 

$`AMP PEAK 21(14Q21.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      129.14        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ 
       20.88        13.68        31.79         7.96        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
      143.15        18.02        78.41       121.94        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM 
       63.12        55.43        36.13       136.73        99.12        24.79 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      114.81        92.48        88.60       107.93        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 
        5.19        98.99        56.81        67.33        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       61.58       101.72        89.36        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SX 
       24.72        63.29        99.19        54.64        27.12        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.52        17.13         8.38        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.90        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.77        23.47        60.72        22.45        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25E 
       19.56        16.47        52.47       107.70        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV 
       10.59        36.23        33.93        91.07        29.98        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW 
       56.28        47.31        35.93        50.37        50.83         7.30 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        38.30        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       34.29        35.47        37.45        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       25.15        23.61        29.56        31.36        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB 
       10.29        11.28        13.41        14.70        11.97        13.74 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       14.50        21.17        17.92        12.10        10.72        11.05 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T 
       10.29         9.37         8.75        13.02         1.02        53.06 
TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E 
       29.03        26.01         1.02         9.01        43.00        19.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 
       10.98         7.99        24.99        45.07        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L 
       13.02         0.99        28.96        19.96        37.05         9.99 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A093 TCGA-A8-A099 TCGA-A8-A09B 
        0.99       112.08        40.01        17.95         9.99        12.00 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09T 
       49.05        45.07        29.98         1.02        25.02        19.04 
TCGA-A8-A09V TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AB 
       15.02        12.00        13.02        21.04         0.99        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04         0.95        73.91         5.72         1.48        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN 
       16.31        14.83        22.19        24.13        25.05        14.99 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE 
       16.57        19.79        15.48        23.24        24.79        29.26 
TCGA-AC-A5EH TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IW 
       16.80        19.33        14.96        13.71        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR 
       12.26         1.68         0.03        20.19         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
        2.30         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AR 
        1.78         1.71         9.96         7.36         7.46         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX 
        7.59         7.17         6.90         7.04         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        5.36        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03R TCGA-AO-A03T 
        0.33         5.33         5.59        61.35        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 
       58.95        29.13        52.18        26.04        37.48        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF 
       53.03        21.53        50.70        50.86        72.00        65.10 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A125 
       26.24        50.24        62.04        55.33       115.27        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
      108.72       106.78       108.03        90.58        98.27        64.04 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       57.30        48.36        41.62        40.57        14.73        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       61.87        70.39        17.79        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP 
       15.62        32.52         2.56        32.91        19.20       140.55 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
       84.10       109.02        64.83        55.86       107.24        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22        83.87       134.14       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ 
      103.86        97.68        98.33        96.00        86.07        99.32 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY 
       17.23        37.81        94.29        61.28        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
      160.90        94.22        99.78       118.59         2.76       104.28 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27        77.69       105.30        32.58        98.76 
TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       98.66        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        66.15        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       39.39        40.54        57.27        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       77.62       143.38       275.87        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
       81.17        78.02       263.28       102.77       140.48        89.46 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WX TCGA-B6-A0X0 TCGA-B6-A0X1 
      157.41        97.48       188.68        21.47       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.88        43.59       101.52        73.51 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
      170.17        37.87         7.07        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 
       40.83        39.55        70.22        81.63        84.13        51.68 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       18.21        43.53        61.51        21.70        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BW 
       75.48        74.14        76.60        53.95        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       49.05        41.75        44.02        89.06        90.97        45.83 
TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP 
       77.98        38.01        29.98        13.91        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        3.22        38.47        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        32.58        24.49 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.43        30.35        10.78        15.16        37.78        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HK 
       24.56        23.08        41.00        52.96        26.50         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HY 
        2.50        13.61        36.85        12.89        51.32        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0WA TCGA-BH-A18F 
        5.59        23.93        24.95        42.35        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
        4.90        35.93        20.12        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       55.63        37.55        66.05         7.36        51.39        51.16 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX 
       91.99       113.82        82.85        42.28        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB 
       17.69        25.81        89.16        97.48        24.62       120.62 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       55.00        72.07       144.59        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A8FY 
       10.52       109.28        20.88        18.64         9.63         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12Q 
       18.87        21.76         9.44        11.93        11.77        12.66 
TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A134 
       12.66        12.66        48.53        12.56        13.51        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ 
       12.92         4.11        12.33        10.92        11.34         0.16 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
       12.03        10.42        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A274 TCGA-C8-A275 
       12.53        12.36        12.95         8.28         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
        9.50        14.43        33.99        12.95        13.02        12.49 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A145 
       13.41        19.46        56.81        13.25        13.97        13.48 
TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE 
       19.20        17.49        16.50        55.50        15.78        18.90 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JM TCGA-D8-A1JN 
       53.00        14.01        18.97        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 
       21.01        12.20        13.32        14.70        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG 
       25.74        27.58        18.15        12.39        17.16        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       21.80        14.50        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 
       16.31        16.64        15.16        43.04        16.54        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43        48.03        16.41        13.48         4.80 
TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-D8-A73U 
        1.61        13.08        12.53        33.37        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A 
       12.66        25.22        43.00        34.42        27.52        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14Q 
       37.51        28.44        28.87        47.15        44.68        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X 
       38.60        33.17        75.98        43.33        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 
       69.34        63.62        21.04        23.87        14.79        25.05 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15J 
       22.82        17.29        21.63        18.21        12.92        53.92 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
       20.58        11.05        50.79        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        37.25        77.65        37.41        70.36 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU 
       33.70        28.44        59.18         3.88        22.19        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        73.64        24.59        75.81        28.90 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 
      102.61         8.75        43.04        34.55        43.56        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N8 
       34.92        38.76        34.29        34.82        32.88        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH 
       36.20        39.55        41.62        35.77        25.84        18.94 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R6 
       24.82        28.27        34.95         2.56         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 
       48.23        45.01         1.12        46.59        47.64        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22G TCGA-E9-A22H 
       42.25        37.74        39.09        38.37        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       20.12         7.13        24.56         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW 
       30.18        30.44        23.90        25.81        27.85        12.20 
TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
       39.72        18.21        18.90        13.25        16.57        15.68 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 
       28.77        25.94        22.82        29.95        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FR 
       19.99        13.94        10.52        14.43        19.96        55.00 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SB 
       22.09        34.03        10.16        23.51        15.22        24.99 
TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC 
       31.30         7.40       109.87        59.57       216.76        83.34 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       75.02        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       62.47        11.84        11.57        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z 
       17.06        14.79        22.26        16.08        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       14.50        19.53        12.36        19.59        17.49        27.91 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
        2.10        36.30        58.52        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       34.92        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       23.47        65.62        41.92        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX 
       14.07        28.21        19.73        64.21        86.96         0.16 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 
        0.26         9.93        21.07        20.68        19.27        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-V7-A7HQ 
       18.87        17.39        17.26        13.94         3.81        66.84 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       11.41        52.96        15.35        16.04       108.07 

  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                        282.90                         275.87 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                         26.40                          28.44 
[1] "0.2 - 282.9 (26.4)" "0.0 - 275.9 (28.4)"
[1] "hr=" "1.2"
D21V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 21(14Q21.1) MUTATED        15       13        2        2        60
  AMP PEAK 21(14Q21.1) WILD-TYPE      74       72        4        4       293
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 21(14Q21.1) MUTATED          55         1         36          7
  AMP PEAK 21(14Q21.1) WILD-TYPE       197         1        118         22
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 21(14Q21.1) MUTATED           18        6         0       3
  AMP PEAK 21(14Q21.1) WILD-TYPE         47       14         1      10
D21V3, multiclass
            clus
vv           AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  STAGE I                              15                             74
  STAGE IA                             13                             72
  STAGE IB                              2                              4
  STAGE II                              2                              4
  STAGE IIA                            60                            293
  STAGE IIB                            55                            197
  STAGE III                             1                              1
  STAGE IIIA                           36                            118
  STAGE IIIB                            7                             22
  STAGE IIIC                           18                             47
  STAGE IV                              6                             14
  STAGE TIS                             0                              1
  STAGE X                               3                             10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 21(14Q21.1) MUTATED    43 148  21   8
  AMP PEAK 21(14Q21.1) WILD-TYPE 233 476 115  32
D21V4, multiclass
    clus
vv   AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  T1                           43                            233
  T2                          148                            476
  T3                           21                            115
  T4                            8                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 21(14Q21.1) MUTATED    87  75  32  21
  AMP PEAK 21(14Q21.1) WILD-TYPE 420 283  87  56
D21V5, multiclass
    clus
vv   AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  N0                           87                            420
  N1                           75                            283
  N2                           32                             87
  N3                           21                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V6, binary
                                cls
clus                               0   1
  AMP PEAK 21(14Q21.1) MUTATED   187   6
  AMP PEAK 21(14Q21.1) WILD-TYPE 702  16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(14Q21.1) MUTATED    187    6
  AMP PEAK 21(14Q21.1) WILD-TYPE  702   16
   clus
vv  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  0                          187                            702
  1                            6                             16
[1] 2 2
[1] FALSE
D21V7, binary
                                cls
clus                               0   1
  AMP PEAK 21(14Q21.1) MUTATED   217   3
  AMP PEAK 21(14Q21.1) WILD-TYPE 851   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(14Q21.1) MUTATED    217    3
  AMP PEAK 21(14Q21.1) WILD-TYPE  851    9
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  FEMALE                          217                            851
  MALE                              3                              9
[1] 2 2
[1] FALSE
D21V8, binary
                                cls
clus                               0   1
  AMP PEAK 21(14Q21.1) MUTATED    85 113
  AMP PEAK 21(14Q21.1) WILD-TYPE 344 405
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(14Q21.1) MUTATED     85  113
  AMP PEAK 21(14Q21.1) WILD-TYPE  344  405
     clus
vv    AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  NO                            85                            344
  YES                          113                            405
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 21(14Q21.1) MUTATED                            0
  AMP PEAK 21(14Q21.1) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 21(14Q21.1) MUTATED                             174
  AMP PEAK 21(14Q21.1) WILD-TYPE                           596
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 21(14Q21.1) MUTATED                               23
  AMP PEAK 21(14Q21.1) WILD-TYPE                            177
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 21(14Q21.1) MUTATED                     0                     3
  AMP PEAK 21(14Q21.1) WILD-TYPE                   6                     6
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 21(14Q21.1) MUTATED                                  9
  AMP PEAK 21(14Q21.1) WILD-TYPE                               20
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 21(14Q21.1) MUTATED                    2              9
  AMP PEAK 21(14Q21.1) WILD-TYPE                 15             38
D21V9, multiclass
                                  clus
vv                                 AMP PEAK 21(14Q21.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             174
  INFILTRATING LOBULAR CARCINOMA                             23
  MEDULLARY CARCINOMA                                         0
  METAPLASTIC CARCINOMA                                       3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                              9
                                  clus
vv                                 AMP PEAK 21(14Q21.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               596
  INFILTRATING LOBULAR CARCINOMA                              177
  MEDULLARY CARCINOMA                                           6
  METAPLASTIC CARCINOMA                                         6
  MIXED HISTOLOGY (PLEASE SPECIFY)                             20
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 21(14Q21.1) MUTATED                                  0    13
  AMP PEAK 21(14Q21.1) WILD-TYPE                                1    47
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 21(14Q21.1) MUTATED                          40   138
  AMP PEAK 21(14Q21.1) WILD-TYPE                       141   607
D21V11, multiclass
                                  clus
vv                                 AMP PEAK 21(14Q21.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      13
  BLACK OR AFRICAN AMERICAN                                  40
  WHITE                                                     138
                                  clus
vv                                 AMP PEAK 21(14Q21.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        47
  BLACK OR AFRICAN AMERICAN                                   141
  WHITE                                                       607
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V12, binary
                                cls
clus                               0   1
  AMP PEAK 21(14Q21.1) MUTATED     5 176
  AMP PEAK 21(14Q21.1) WILD-TYPE  34 699
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(14Q21.1) MUTATED      5  176
  AMP PEAK 21(14Q21.1) WILD-TYPE   34  699
                        clus
vv                       AMP PEAK 21(14Q21.1) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                          176
                        clus
vv                       AMP PEAK 21(14Q21.1) WILD-TYPE
  HISPANIC OR LATINO                                 34
  NOT HISPANIC OR LATINO                            699
[1] 2 2
[1] FALSE

Clustering(22) Variable = AMP PEAK 22(15Q26.3) MUTATION ANALYSIS
D22V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 22(15Q26.3) MUTATED   168  22
  AMP PEAK 22(15Q26.3) WILD-TYPE 749 125
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           190                            874 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                            22                            125 
$`AMP PEAK 22(15Q26.3) MUTATED`
TCGA-3C-AAAU TCGA-4H-AAAK TCGA-A1-A0SD TCGA-A1-A0SF TCGA-A1-A0SN TCGA-A2-A04P 
      129.14        11.44        14.37        48.10        39.32        18.02 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CV TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D4 
       73.84        87.25        98.99        67.33        33.76        25.22 
TCGA-A2-A0EV TCGA-A2-A0SU TCGA-A2-A0T2 TCGA-A2-A0YE TCGA-A2-A1FW TCGA-A2-A25B 
       31.82        54.64         8.38        18.21        17.36        42.44 
TCGA-A2-A25C TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XY TCGA-A2-A4RW TCGA-A7-A0CE 
       17.19        33.93        91.07        35.93         7.30        35.31 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A13F TCGA-A7-A3IY TCGA-A7-A4SA TCGA-A7-A4SE 
       37.45        35.67        25.15        11.34        14.93        21.17 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R 
       10.29         9.37        10.42        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A085 TCGA-A8-A08B 
       31.00        10.98         8.98        24.99        36.95        38.01 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A097 
       33.01        19.96         9.99        31.00         0.99        12.00 
TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09M TCGA-AC-A5XU TCGA-AN-A04A TCGA-AN-A0AL 
       49.05        29.98        33.07        14.96         2.96         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FW TCGA-AN-A0XU 
        0.16         0.33         0.33         7.96         0.36         0.33 
TCGA-AO-A03L TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0JB 
       80.28        95.70        47.87        29.13        52.18        50.70 
TCGA-AO-A0JD TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A1KQ 
       72.00        71.80       115.27       108.03        64.04        61.87 
TCGA-AQ-A04L TCGA-AR-A0TP TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TY TCGA-AR-A0U1 
      130.09       140.55        84.10       109.02        55.86       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24Q 
       83.87       107.21        61.28        86.43        50.89       104.28 
TCGA-AR-A24S TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A2LH TCGA-AR-A2LR 
       97.84        98.66        99.62        85.64        20.25        57.27 
TCGA-B6-A0I5 TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IO TCGA-B6-A0RG TCGA-B6-A0WT 
      281.29       233.62       127.33       165.76        68.45       188.68 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AZ TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BP 
       62.93        59.84        63.09        43.53        61.51        75.48 
TCGA-BH-A0BR TCGA-BH-A0C0 TCGA-BH-A0DL TCGA-BH-A0DS TCGA-BH-A0EE TCGA-BH-A0GY 
       76.60        41.75        78.28         2.56        31.00        30.35 
TCGA-BH-A0WA TCGA-BH-A18N TCGA-BH-A18V TCGA-BH-A1EW TCGA-BH-A1F6 TCGA-BH-A1FD 
       23.05        37.74        51.16        55.69        97.48        33.17 
TCGA-BH-A1FH TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12O TCGA-C8-A130 TCGA-C8-A132 
       36.92        18.64        23.51        12.66         3.16         1.87 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN 
       11.34        11.28         0.16        10.42        12.33        12.95 
TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A27A TCGA-D8-A13Y TCGA-D8-A1JA TCGA-D8-A1JB 
       12.36         8.28        24.56        56.81        16.50        55.50 
TCGA-D8-A1JP TCGA-D8-A1X9 TCGA-D8-A1XK TCGA-D8-A27H TCGA-D8-A27N TCGA-D8-A27R 
       21.01        23.90        14.50        13.05         4.80        10.09 
TCGA-E2-A10A TCGA-E2-A14T TCGA-E2-A14W TCGA-E2-A152 TCGA-E2-A15A TCGA-E2-A15D 
       40.41        75.98        32.02        69.96        23.34        17.29 
TCGA-E2-A15E TCGA-E2-A15L TCGA-E2-A1IL TCGA-E2-A1L7 TCGA-E2-A1LA TCGA-E2-A1LH 
       20.71        20.58         3.88        60.36        24.59       106.75 
TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A56Z TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NF 
      102.61        43.04         8.28        34.16        36.20        35.24 
TCGA-E9-A1NI TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RF 
        9.86        28.27         2.56        45.01        40.24         6.58 
TCGA-E9-A2JS TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A5UO TCGA-EW-A1IY TCGA-EW-A1J6 
       29.72        30.18        23.90        25.81         8.48        28.77 
TCGA-EW-A1OW TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1PB TCGA-EW-A3U0 TCGA-GM-A2DD 
       22.82        29.82        23.11        19.99        17.49        75.02 
TCGA-GM-A2DF TCGA-GM-A2DK TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FR 
       70.85        86.96        32.75        15.32        14.79        16.08 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A6VO TCGA-PE-A5DC 
       19.59        17.49        34.92        36.36        28.21        47.01 
TCGA-PL-A8LX TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-W8-A86G 
        0.16        17.26        17.03        11.41 

$`AMP PEAK 22(15Q26.3) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      131.67        42.81        40.14        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
        8.52        43.43        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N 
       31.79         7.96        28.01        19.20        18.21       143.15 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
       78.41       121.94        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
      136.73        99.12        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CW TCGA-A2-A0CX 
      107.93        77.19        75.25         5.19       107.93        56.81 
TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       34.55        61.58       101.72        89.36        80.28       118.45 
TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW 
       79.76        74.40        72.00        35.05        34.29        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       24.72        63.29        99.19        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.52        17.13        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.77        23.47        60.72        22.45        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25E 
       19.56        16.47        52.47       107.70        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       10.59        36.23        39.65        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       47.31        50.37        50.83        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        38.30        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G 
       30.61        33.11        29.79        31.73        20.19        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       29.56        31.36        24.26        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        22.32        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D 
       14.70        11.97        13.74        14.50        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06T 
       12.10        10.72        11.05         8.75        13.02        53.06 
TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       29.03        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 
       32.05         9.99         7.99         9.99        45.07        15.06 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O 
       13.02         0.99        28.96        12.00        37.05        31.00 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       33.01       112.08        43.00        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C 
       17.95        41.98         9.99         9.99        12.00         1.02 
TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        45.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04         0.95 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72         1.48        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN 
       16.31        14.83        22.19        24.13        25.05        14.99 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE 
       16.57        19.79        15.48        23.24        24.79        29.26 
TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y 
       16.80        14.53        19.33        11.44        13.71        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC 
       18.67        13.58        12.26         1.68         8.22         0.03 
TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
       20.19         1.12         1.32         2.30         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.23         0.33         0.62         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL 
        7.36         0.33         6.44         5.65         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY 
        7.17         6.90         7.04         0.33         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.33         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N 
        0.33         0.33         5.33         5.59        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 
       81.63        68.75        58.95        32.78        21.40        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC 
       37.48        20.32        22.36        53.03        21.53        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL 
       76.77        65.10        26.24        50.24        62.04        55.33 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E 
       99.25       108.72       106.78        90.58        98.27        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       48.36        41.62        40.57        14.73        82.62        70.39 
TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
        0.53        17.79        24.79        26.93         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR 
       32.52         2.56        32.91        19.20        98.33         5.26 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U3 
       75.22        98.93        64.83       107.24        65.36       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      125.16       108.36       101.00       103.86        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS 
       96.00        86.07        93.90        99.32        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M 
       94.29        86.53        33.73       160.90        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24U 
       99.78       118.59         2.76       112.77       105.27        77.69 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A255 
      105.30        32.58        98.76        89.00        93.30        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
       93.83       166.42        86.53        54.21        66.15        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP 
       38.17        39.39        40.54        73.35        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
       10.59        77.62       143.38        12.13       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IN 
       50.70        65.72       146.50       112.37        18.77        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      129.07       140.88       255.68       212.25       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS 
       78.02       263.28       162.05       102.77       140.48       100.70 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WW 
       89.46       282.90       157.41        97.48        79.63        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.47       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.88        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        70.16        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B0 
       18.84       103.63        71.15        20.45        25.55        81.44 
TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 
       40.83        39.55        39.16        70.22        81.63        84.13 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BJ TCGA-BH-A0BL 
       51.68        37.22        32.02        18.21        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       61.68        72.23        74.14        53.95        45.57        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       77.95        49.05        44.02        89.06        90.97        45.83 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO 
       77.98        23.44        38.01        29.98        13.91        17.26 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
       15.65         3.22        38.47        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        46.19 
TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       32.58        24.49        24.43        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
       20.38         5.85         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       42.35        44.81        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       90.84        26.66        72.56        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
       66.05         7.36        51.39        67.50        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       82.85        42.28        12.00        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FE 
       31.53        89.16        24.62       120.62       114.15        74.73 
TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
      122.89        63.35        55.00        45.63        72.07       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       72.07        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
       20.88         9.63         5.26         9.70        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q 
        9.44        11.93        11.77        11.77        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       13.51        12.59        12.92         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HK TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y 
       10.92        12.03        12.33        20.25        12.53        12.95 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 
        9.67         9.53         0.03         9.50        14.43        33.99 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z 
       12.95        13.02        12.49        13.41        19.46        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 
       13.25        20.58        13.97        14.17        13.48        21.14 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       19.20        14.17        17.49        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       12.03        53.00        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        19.40        20.38        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XB 
       18.58        17.79        16.73        25.74        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL 
       12.39        17.16        15.22        14.73        21.80        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        55.30        16.41        15.85        16.31        16.64 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       12.99        15.16        43.04        16.54        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T 
       14.43        48.03        16.41        13.48         1.61        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       12.53        12.26        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       12.66        25.22        43.00        34.42        27.52        46.59 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V 
       40.96        38.24        38.60        33.17        43.33        34.26 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 
       31.96        69.34        18.51        63.62        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15F 
       21.04        23.87        14.79        25.05        22.82        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15M 
       18.21        12.92        55.63        53.92         9.04        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       50.79        19.56        56.94        14.07        51.39        76.57 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       53.62        87.22        33.01        32.35        28.50        16.47 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       28.44        59.18        22.19        60.99        11.08        54.18 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LK 
       73.64        19.66        75.81        28.90        50.07         8.75 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       26.99        34.55        43.56        30.61        34.92        38.76 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 
       34.29        17.69        34.82        32.88        36.82        22.29 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH 
       36.56        39.55        41.62        35.77        25.84        18.94 
TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       24.82        34.95         6.12         3.02        11.15        48.23 
TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
       32.09         1.12        46.65        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT 
       38.99         1.94         7.13        24.56        12.33         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       38.07        32.91        30.44        23.84        26.70         0.79 
TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 
       26.40        27.85        12.20        39.72        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        15.68        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 
       40.41        41.13        39.78        52.96        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF 
        7.86        18.90         6.15        13.94        10.52        14.43 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SB 
       34.03        10.16        23.51        15.22        16.77        24.99 
TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       31.30        33.21         7.40       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM 
       79.10        83.34        72.10        85.15       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      101.62        85.35       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 
       11.84        11.57        21.24        13.22         7.10        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN 
       10.62        24.95        29.23        25.05        17.06        14.70 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       14.47        22.26         2.63        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       19.53        12.36        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RX TCGA-OL-A5RY 
       58.52        31.99        58.62        40.08        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        26.04        17.36        14.07        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
        8.91        64.21        86.96         0.26         9.93        18.81 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 
       18.48        21.07        20.68        19.27        13.84        18.87 
TCGA-S3-AA14 TCGA-S3-AA17 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-WT-AB41 TCGA-WT-AB44 
       17.39        13.94         3.81        66.84        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                        281.29                         282.90 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                          31.0                           26.7 
[1] "0.2 - 281.3 (31.0)" "0.0 - 282.9 (26.7)"
[1] "hr=" "1.4"
D22V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 22(15Q26.3) MUTATED        18       10        0        0        68
  AMP PEAK 22(15Q26.3) WILD-TYPE      71       75        6        6       285
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 22(15Q26.3) MUTATED          45         1         29          5
  AMP PEAK 22(15Q26.3) WILD-TYPE       207         1        125         24
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 22(15Q26.3) MUTATED           11        4         0       1
  AMP PEAK 22(15Q26.3) WILD-TYPE         54       16         1      12
D22V3, multiclass
            clus
vv           AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  STAGE I                              18                             71
  STAGE IA                             10                             75
  STAGE IB                              0                              6
  STAGE II                              0                              6
  STAGE IIA                            68                            285
  STAGE IIB                            45                            207
  STAGE III                             1                              1
  STAGE IIIA                           29                            125
  STAGE IIIB                            5                             24
  STAGE IIIC                           11                             54
  STAGE IV                              4                             16
  STAGE TIS                             0                              1
  STAGE X                               1                             12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 22(15Q26.3) MUTATED    40 120  24   9
  AMP PEAK 22(15Q26.3) WILD-TYPE 236 504 112  31
D22V4, multiclass
    clus
vv   AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  T1                           40                            236
  T2                          120                            504
  T3                           24                            112
  T4                            9                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 22(15Q26.3) MUTATED    92  62  24  13
  AMP PEAK 22(15Q26.3) WILD-TYPE 415 296  95  64
D22V5, multiclass
    clus
vv   AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  N0                           92                            415
  N1                           62                            296
  N2                           24                             95
  N3                           13                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V6, binary
                                cls
clus                               0   1
  AMP PEAK 22(15Q26.3) MUTATED   168   4
  AMP PEAK 22(15Q26.3) WILD-TYPE 721  18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(15Q26.3) MUTATED    168    4
  AMP PEAK 22(15Q26.3) WILD-TYPE  721   18
   clus
vv  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  0                          168                            721
  1                            4                             18
[1] 2 2
[1] FALSE
D22V7, binary
                                cls
clus                               0   1
  AMP PEAK 22(15Q26.3) MUTATED   190   4
  AMP PEAK 22(15Q26.3) WILD-TYPE 878   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(15Q26.3) MUTATED    190    4
  AMP PEAK 22(15Q26.3) WILD-TYPE  878    8
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  FEMALE                          190                            878
  MALE                              4                              8
[1] 2 2
[1] FALSE
D22V8, binary
                                cls
clus                               0   1
  AMP PEAK 22(15Q26.3) MUTATED    79  95
  AMP PEAK 22(15Q26.3) WILD-TYPE 350 423
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(15Q26.3) MUTATED     79   95
  AMP PEAK 22(15Q26.3) WILD-TYPE  350  423
     clus
vv    AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  NO                            79                            350
  YES                           95                            423
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 22(15Q26.3) MUTATED                            0
  AMP PEAK 22(15Q26.3) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 22(15Q26.3) MUTATED                             167
  AMP PEAK 22(15Q26.3) WILD-TYPE                           603
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 22(15Q26.3) MUTATED                               11
  AMP PEAK 22(15Q26.3) WILD-TYPE                            189
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 22(15Q26.3) MUTATED                     3                     1
  AMP PEAK 22(15Q26.3) WILD-TYPE                   3                     8
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 22(15Q26.3) MUTATED                                  4
  AMP PEAK 22(15Q26.3) WILD-TYPE                               25
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 22(15Q26.3) MUTATED                    3              4
  AMP PEAK 22(15Q26.3) WILD-TYPE                 14             43
D22V9, multiclass
                                  clus
vv                                 AMP PEAK 22(15Q26.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             167
  INFILTRATING LOBULAR CARCINOMA                             11
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                            4
  MUCINOUS CARCINOMA                                          3
  OTHER  SPECIFY                                              4
                                  clus
vv                                 AMP PEAK 22(15Q26.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               603
  INFILTRATING LOBULAR CARCINOMA                              189
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         8
  MIXED HISTOLOGY (PLEASE SPECIFY)                             25
  MUCINOUS CARCINOMA                                           14
  OTHER  SPECIFY                                               43
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 22(15Q26.3) MUTATED                                  0    16
  AMP PEAK 22(15Q26.3) WILD-TYPE                                1    44
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 22(15Q26.3) MUTATED                          39   118
  AMP PEAK 22(15Q26.3) WILD-TYPE                       142   627
D22V11, multiclass
                                  clus
vv                                 AMP PEAK 22(15Q26.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      16
  BLACK OR AFRICAN AMERICAN                                  39
  WHITE                                                     118
                                  clus
vv                                 AMP PEAK 22(15Q26.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        44
  BLACK OR AFRICAN AMERICAN                                   142
  WHITE                                                       627
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V12, binary
                                cls
clus                               0   1
  AMP PEAK 22(15Q26.3) MUTATED     4 158
  AMP PEAK 22(15Q26.3) WILD-TYPE  35 717
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(15Q26.3) MUTATED      4  158
  AMP PEAK 22(15Q26.3) WILD-TYPE   35  717
                        clus
vv                       AMP PEAK 22(15Q26.3) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                          158
                        clus
vv                       AMP PEAK 22(15Q26.3) WILD-TYPE
  HISPANIC OR LATINO                                 35
  NOT HISPANIC OR LATINO                            717
[1] 2 2
[1] FALSE

Clustering(23) Variable = AMP PEAK 23(17P11.2) MUTATION ANALYSIS
D23V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 23(17P11.2) MUTATED   124  22
  AMP PEAK 23(17P11.2) WILD-TYPE 793 125
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           146                            918 
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                            22                            125 
$`AMP PEAK 23(17P11.2) MUTATED`
TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SN TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV 
       11.44         9.96        39.32        35.05        34.29        31.82 
TCGA-A2-A0EY TCGA-A2-A0SY TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YG TCGA-A2-A0YJ 
       63.29        44.28        20.75        32.55        21.90        18.61 
TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A25B TCGA-A2-A3XU TCGA-A2-A3XX 
       31.73        23.47        60.72        42.44        29.98        47.31 
TCGA-A7-A0CD TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26J TCGA-A7-A3J0 
       38.30        29.79        25.15        29.56        20.61        10.29 
TCGA-A7-A6VV TCGA-A8-A06Q TCGA-A8-A07P TCGA-A8-A07W TCGA-A8-A086 TCGA-A8-A08G 
       10.29         1.02        10.98         9.99        13.02        19.96 
TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A093 TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09R 
       33.01        43.00        17.95        12.00        49.05         8.98 
TCGA-A8-A09X TCGA-AC-A23G TCGA-AC-A2QH TCGA-AC-A8OP TCGA-AN-A0FT TCGA-AN-A0FV 
       14.01        73.91        33.04        20.19         7.04         0.33 
TCGA-AN-A0XT TCGA-AO-A03L TCGA-AO-A0J7 TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A12B 
        0.33        80.28        20.32        72.00        55.33        98.27 
TCGA-AO-A12E TCGA-AQ-A1H3 TCGA-AR-A0TQ TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A24H 
       57.30        32.52        98.33        61.28        86.53       160.90 
TCGA-AR-A24K TCGA-AR-A24Z TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LR 
       50.89        98.66        54.21        66.15        63.62        57.27 
TCGA-AR-A5QM TCGA-B6-A0RS TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WX TCGA-B6-A0WY 
       73.35       100.70        97.48        79.63        21.47       113.79 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A401 TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0B2 
       43.59        73.51        85.35        62.93        20.45        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0DD TCGA-BH-A0DP 
       39.55        81.63        45.57        77.95        45.83        15.65 
TCGA-BH-A0H7 TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A18N TCGA-BH-A18S TCGA-BH-A1EX 
       23.08        36.85        51.32        37.74        66.05        49.58 
TCGA-BH-A1F2 TCGA-BH-A1FC TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FN TCGA-BH-A204 
       31.53       114.15       122.89        63.35        72.07        83.31 
TCGA-C8-A12W TCGA-C8-A132 TCGA-C8-A135 TCGA-D8-A143 TCGA-D8-A1JB TCGA-D8-A1JC 
       12.66         1.87        12.92        14.17        55.50        15.78 
TCGA-D8-A1JF TCGA-D8-A1JT TCGA-D8-A1XB TCGA-D8-A1XM TCGA-D8-A1XS TCGA-D8-A1XY 
       12.03        13.32        18.15        17.69        16.31        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y2 TCGA-D8-A27G TCGA-D8-A27N TCGA-D8-A27T TCGA-E2-A107 
       15.32        14.24        13.45         4.80        13.08        34.42 
TCGA-E2-A10C TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Y TCGA-E2-A15A TCGA-E2-A1LK 
       40.11        44.68        40.96        69.34        23.34         8.75 
TCGA-E2-A574 TCGA-E9-A1N9 TCGA-E9-A1R6 TCGA-E9-A1RE TCGA-E9-A1RH TCGA-E9-A226 
       38.76        36.20        11.15        46.65        46.59        34.45 
TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UO TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OY 
       23.84         0.79        25.81        15.68        28.77        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A2FS TCGA-EW-A423 
       40.41        52.96        19.99         6.15        52.73        10.16 
TCGA-GM-A2DC TCGA-GM-A2DK TCGA-HN-A2NL TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 
       83.34        86.96         2.60        19.53        12.36        17.49 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OL-A5RZ TCGA-OL-A66K TCGA-OL-A6VO TCGA-S3-A6ZG 
       27.91        22.39        22.32        41.92        28.21        18.48 
TCGA-S3-A6ZH TCGA-UU-A93S 
       21.07         3.81 

$`AMP PEAK 23(17P11.2) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SP 
       20.88        13.68        31.79         7.96        28.01        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T 
       18.21       143.15        18.02        78.41       121.94        73.84 
TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
       87.25        63.12       101.98        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
       99.12        24.79       114.81        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
       89.36        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       61.94        24.72        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       50.43        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YH 
       17.46        18.90        25.28        18.21        50.47        21.67 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FZ 
       49.48        19.33        48.46        23.77        17.36        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       20.25        19.20        19.56        16.47        52.47       107.70 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3XZ 
       33.93        91.07        32.75        56.28        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G 
       37.45        35.67        33.11        31.73        20.19        23.61 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       31.36        24.26        23.74        23.80        21.73        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       11.34        10.59        11.28        13.41        14.70        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       14.93        13.74        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       12.10        10.72        11.05         9.37        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       13.02        13.02        17.98        53.06        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       19.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 
        9.99         8.98         7.99        24.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08I 
       36.95         0.99        38.01        28.96        33.01        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T 
       37.05         9.99        31.00        31.00         0.99       112.08 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       40.01        33.01        30.97        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
        9.99         1.02        50.04        45.07        29.98        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 
        1.02        25.02        19.04        15.02         0.99        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       19.04        13.02        21.04         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04         0.95        22.95         5.72         1.48        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       26.04        74.14        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN 
       16.31        14.83        22.19        24.13        25.05        14.99 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE 
       16.57        19.79        15.48        23.24        24.79        29.26 
TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X 
       16.80        14.53        19.33        14.96        11.44        13.71 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       17.42        18.67        13.58        12.26         1.68         8.22 
TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
        0.03         1.12         1.32         2.30         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.23         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.17         6.90         0.36         0.33         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O 
        0.33         5.33         5.59        61.35        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        47.87        58.95        29.13        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 
       21.40        52.18        26.04        37.48        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       21.53        50.70        50.86        76.77        65.10        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       50.24        62.04        71.80       115.27        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G 
      106.78       108.03        90.58        64.04        48.36        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
       40.57        14.73        82.62        61.87        70.39         0.53 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       17.79        24.79        26.93       130.09         5.65        15.62 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS 
        2.56        32.91        19.20       140.55         5.26        84.10 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ 
      109.02        75.22        98.93        64.83        55.86       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
       65.36       133.22        83.87       134.14       107.21       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
      108.36       101.00       103.86        97.68        98.33        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU 
       86.07        93.90        99.32        17.23        37.81        94.29 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       86.43        33.73        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27        77.69 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
      105.30        32.58        98.76        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
       77.62       143.38       281.29        12.13       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.72       146.50       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      127.33        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN 
       68.45       212.25       234.28        81.17        78.02       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.48        89.46       282.90       157.41 
TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
      188.68        18.35       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       68.94        58.88       101.52       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
        7.07        70.16        68.12        18.84       103.63        71.15 
TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B4 TCGA-BH-A0B5 
       59.84        25.55        63.09        81.44        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       84.13        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 
       74.14        76.60        53.95        49.94        49.05        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       44.02        89.06        90.97        77.98        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        17.26         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       38.47        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       14.30         9.63        44.81        46.19        32.58        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       53.26        24.56        41.00        52.96        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY 
        5.85         2.50        13.61        12.89        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18U 
       72.56        30.28        55.63        37.55         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.16        67.50        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 
       12.00        55.69        17.69        25.81        89.16        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FH TCGA-BH-A1FL 
       24.62       120.62        33.17        74.73        36.92        55.00 
TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       45.63       144.59        72.07        28.14        26.14        38.60 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        10.65         6.44        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 
      109.28        20.88        18.64        23.51         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M 
        9.70        18.87        21.76         9.44        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 
       12.66        48.53        12.56         3.16        13.51        12.59 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
        4.11         4.08        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
        0.16        12.03        10.42        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       20.25        12.53        12.36        12.95         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
        9.53         0.03         9.50        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y 
       12.95        13.02        12.49        13.41        19.46        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 
       20.88        13.25        20.58        13.97        13.48        21.14 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JE 
       19.20        14.17        17.49        16.50        18.15        18.90 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       53.00        14.01        18.97        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X5 
       19.40        20.38        21.01        12.20        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC 
       17.79        16.73        25.74        23.90        27.58        12.39 
TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       17.16        15.22        14.73        21.80        14.50        19.92 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       55.30        16.41        15.85        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       43.04        15.52         9.93        14.14        17.42        16.04 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P 
       13.05        14.43        48.03        16.41        13.48         1.61 
TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       10.09        12.53        12.26        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A109 
       16.18        12.66        25.22        43.00        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q 
       40.41        37.51        28.44        28.87        47.15        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       31.96        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        14.79        25.05        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
        9.04        20.58        11.05        50.79        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       32.35        28.50        16.47        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 
       22.19        60.99        11.08        54.18        60.36        73.64 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH 
       19.66        24.59        75.81        28.90        50.07       106.75 
TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
      102.61        43.04        26.99        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 
       30.61        34.92        34.29        17.69        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       36.82        22.29        34.16        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       35.77        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 
       28.27        34.95         2.56         6.12         3.02        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG 
       45.01        32.09        40.24         1.12         6.58        21.27 
TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       47.64        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A5FK TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
       26.70        26.40        27.85        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1OV TCGA-EW-A1OW 
       18.21        18.90        13.25        16.57        25.94        22.82 
TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       29.95        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF 
       30.08         7.86        18.90        13.94        10.52        14.43 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       34.55        19.96        55.00        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC 
       17.49        23.51        15.22        16.77        24.99        31.30 
TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       33.21         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM 
       75.02        70.85        72.10        85.15       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      101.62        85.35       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW 
       66.38        72.03        13.55        18.12        62.47        11.84 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF 
       11.57        21.24        13.22         7.10        13.28        10.62 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
       24.95        32.75        29.23        25.05        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR 
       14.70        14.47        14.79        22.26         2.63        16.08 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 TCGA-OK-A5Q2 TCGA-OL-A5D6 
       15.68         7.46        14.50        19.59         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       58.52        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       28.87        24.72        20.38        26.70        23.47        65.62 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        26.04        17.36        14.07        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY 
        8.91        47.01        64.21        86.96         0.16         0.26 
TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 
        9.93        18.81        20.68        19.27        13.84        18.87 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-W8-A86G 
       17.39        17.26        13.94        17.03        66.84        11.41 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       108.07       107.05 

  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                          0.33                           0.03 
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                         160.9                          282.9 
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                         32.17                          26.70 
[1] "0.3 - 160.9 (32.2)" "0.0 - 282.9 (26.7)"
[1] "hr=" "1.3"
D23V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 23(17P11.2) MUTATED        10        8        0        1        49
  AMP PEAK 23(17P11.2) WILD-TYPE      79       77        6        5       304
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 23(17P11.2) MUTATED          33         1         27          4
  AMP PEAK 23(17P11.2) WILD-TYPE       219         1        127         25
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 23(17P11.2) MUTATED           11        2         0       1
  AMP PEAK 23(17P11.2) WILD-TYPE         54       18         1      12
D23V3, multiclass
            clus
vv           AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  STAGE I                              10                             79
  STAGE IA                              8                             77
  STAGE IB                              0                              6
  STAGE II                              1                              5
  STAGE IIA                            49                            304
  STAGE IIB                            33                            219
  STAGE III                             1                              1
  STAGE IIIA                           27                            127
  STAGE IIIB                            4                             25
  STAGE IIIC                           11                             54
  STAGE IV                              2                             18
  STAGE TIS                             0                              1
  STAGE X                               1                             12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 23(17P11.2) MUTATED    32  82  26   7
  AMP PEAK 23(17P11.2) WILD-TYPE 244 542 110  33
D23V4, multiclass
    clus
vv   AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  T1                           32                            244
  T2                           82                            542
  T3                           26                            110
  T4                            7                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 23(17P11.2) MUTATED    62  51  18  12
  AMP PEAK 23(17P11.2) WILD-TYPE 445 307 101  65
D23V5, multiclass
    clus
vv   AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  N0                           62                            445
  N1                           51                            307
  N2                           18                            101
  N3                           12                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V6, binary
                                cls
clus                               0   1
  AMP PEAK 23(17P11.2) MUTATED   121   2
  AMP PEAK 23(17P11.2) WILD-TYPE 768  20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17P11.2) MUTATED    121    2
  AMP PEAK 23(17P11.2) WILD-TYPE  768   20
   clus
vv  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  0                          121                            768
  1                            2                             20
[1] 2 2
[1] FALSE
D23V7, binary
                                cls
clus                               0   1
  AMP PEAK 23(17P11.2) MUTATED   144   3
  AMP PEAK 23(17P11.2) WILD-TYPE 924   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17P11.2) MUTATED    144    3
  AMP PEAK 23(17P11.2) WILD-TYPE  924    9
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  FEMALE                          144                            924
  MALE                              3                              9
[1] 2 2
[1] FALSE
D23V8, binary
                                cls
clus                               0   1
  AMP PEAK 23(17P11.2) MUTATED    49  79
  AMP PEAK 23(17P11.2) WILD-TYPE 380 439
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17P11.2) MUTATED     49   79
  AMP PEAK 23(17P11.2) WILD-TYPE  380  439
     clus
vv    AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  NO                            49                            380
  YES                           79                            439
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 23(17P11.2) MUTATED                            0
  AMP PEAK 23(17P11.2) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 23(17P11.2) MUTATED                             109
  AMP PEAK 23(17P11.2) WILD-TYPE                           661
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 23(17P11.2) MUTATED                               24
  AMP PEAK 23(17P11.2) WILD-TYPE                            176
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 23(17P11.2) MUTATED                     1                     3
  AMP PEAK 23(17P11.2) WILD-TYPE                   5                     6
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 23(17P11.2) MUTATED                                  2
  AMP PEAK 23(17P11.2) WILD-TYPE                               27
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 23(17P11.2) MUTATED                    3              5
  AMP PEAK 23(17P11.2) WILD-TYPE                 14             42
D23V9, multiclass
                                  clus
vv                                 AMP PEAK 23(17P11.2) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             109
  INFILTRATING LOBULAR CARCINOMA                             24
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            2
  MUCINOUS CARCINOMA                                          3
  OTHER  SPECIFY                                              5
                                  clus
vv                                 AMP PEAK 23(17P11.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               661
  INFILTRATING LOBULAR CARCINOMA                              176
  MEDULLARY CARCINOMA                                           5
  METAPLASTIC CARCINOMA                                         6
  MIXED HISTOLOGY (PLEASE SPECIFY)                             27
  MUCINOUS CARCINOMA                                           14
  OTHER  SPECIFY                                               42
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 23(17P11.2) MUTATED                                  0     5
  AMP PEAK 23(17P11.2) WILD-TYPE                                1    55
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 23(17P11.2) MUTATED                          24   104
  AMP PEAK 23(17P11.2) WILD-TYPE                       157   641
D23V11, multiclass
                                  clus
vv                                 AMP PEAK 23(17P11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       5
  BLACK OR AFRICAN AMERICAN                                  24
  WHITE                                                     104
                                  clus
vv                                 AMP PEAK 23(17P11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        55
  BLACK OR AFRICAN AMERICAN                                   157
  WHITE                                                       641
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V12, binary
                                cls
clus                               0   1
  AMP PEAK 23(17P11.2) MUTATED     5 117
  AMP PEAK 23(17P11.2) WILD-TYPE  34 758
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17P11.2) MUTATED      5  117
  AMP PEAK 23(17P11.2) WILD-TYPE   34  758
                        clus
vv                       AMP PEAK 23(17P11.2) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                          117
                        clus
vv                       AMP PEAK 23(17P11.2) WILD-TYPE
  HISPANIC OR LATINO                                 34
  NOT HISPANIC OR LATINO                            758
[1] 2 2
[1] FALSE

Clustering(24) Variable = AMP PEAK 24(17Q12) MUTATION ANALYSIS
D24V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 24(17Q12) MUTATED   279  49
  AMP PEAK 24(17Q12) WILD-TYPE 638  98
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         328                          736 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                          49                           98 
$`AMP PEAK 24(17Q12) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SH 
      131.67        42.81        40.14        11.44         9.96        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04W TCGA-A2-A04X 
       13.68         7.96        39.32        28.01       101.98        55.43 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D4 TCGA-A2-A0ET 
       75.25         5.19        56.81        34.55        25.22        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EY TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T3 
       34.29        31.82        63.29        44.28        17.13        49.84 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YM 
       20.75        32.55        18.21        21.90        18.61        31.73 
TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A25E TCGA-A2-A3XU TCGA-A2-A3XV 
       60.72        20.25        19.20       105.34        29.98        32.75 
TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A7-A0CD TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F 
       47.31        50.37        38.30        29.79        31.73        25.15 
TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3J0 TCGA-A7-A4SA TCGA-A7-A4SB 
       23.80        20.61        22.32        10.29        14.93        13.74 
TCGA-A7-A4SF TCGA-A8-A06O TCGA-A8-A06U TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A07B 
       17.92        13.02        29.03         1.02        53.98        43.00 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07W 
       18.97        14.01         9.99        10.98         8.98         9.99 
TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08P 
       13.02        38.01        33.01        19.96        37.05        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 
        0.99        33.01        43.00        30.97        17.95        12.00 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09R 
        9.99        12.00        49.05        45.07        33.07         8.98 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G 
       21.04         0.99        17.03        38.04         0.95        73.91 
TCGA-AC-A23H TCGA-AC-A2FB TCGA-AC-A2FM TCGA-AC-A2QJ TCGA-AC-A3QQ TCGA-AC-A3W5 
        5.72        40.57        26.04        14.66        24.13        16.57 
TCGA-AC-A7VB TCGA-AC-A8OQ TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A0FT 
        8.22         1.12         0.23         0.62         1.78         7.04 
TCGA-AN-A0FV TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03P 
        0.33         0.33         5.36         0.33        80.28        95.70 
TCGA-AO-A0J7 TCGA-AO-A0JE TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A12B 
       20.32        76.77        55.33        71.80       115.27        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A0Y5 
       64.04        57.30        61.87         0.53        24.79         5.65 
TCGA-AQ-A1H3 TCGA-AR-A0TQ TCGA-AR-A0TX TCGA-AR-A0U2 TCGA-AR-A1AK TCGA-AR-A1AV 
       32.52        98.33        64.83        83.87       103.86        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24P 
       86.53        86.43       160.90        50.89        94.22         2.76 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A255 
       77.69       105.30        98.66        89.00        85.64        71.05 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-B6-A0I1 TCGA-B6-A0I9 TCGA-B6-A0IG 
       86.53        54.21        66.15        77.62        12.13       146.50 
TCGA-B6-A0IN TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RS TCGA-B6-A0WY TCGA-B6-A0X1 
       84.59        68.45       212.25       100.70       113.79       245.10 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A3ZX TCGA-B6-A401 
       43.59       101.52        73.51       139.17        37.87        85.35 
TCGA-B6-A402 TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B4 TCGA-BH-A0B7 
       70.16        62.93        20.45        63.09        39.16        84.13 
TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DD 
       45.57        77.95        49.05        41.75        90.97        45.83 
TCGA-BH-A0DE TCGA-BH-A0DP TCGA-BH-A0DZ TCGA-BH-A0EE TCGA-BH-A0H7 TCGA-BH-A0HQ 
       77.98        15.65        16.27        31.00        23.08        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HY TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18P 
       12.89        51.32        50.79        26.66        37.74        30.28 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EV TCGA-BH-A1EW 
       37.55        66.05        51.39        67.50        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1FC TCGA-BH-A1FG TCGA-BH-A1FJ 
       49.58        25.81        31.53       114.15       122.89        63.35 
TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A42T TCGA-C8-A12L 
       72.07        72.07        26.14        83.31        10.52        11.93 
TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12W TCGA-C8-A12Z 
       11.77        12.66        11.77        12.66        12.66        12.56 
TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HF 
        3.16         1.87        12.92         4.11         4.08        10.92 
TCGA-C8-A1HG TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26W 
       11.34        12.03        10.42        12.33        12.95        12.53 
TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M8 
       12.36         8.28         0.03         9.50        24.56        12.95 
TCGA-C8-A8HP TCGA-C8-A9FZ TCGA-D8-A140 TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1J9 
       13.02        19.46        13.25        14.17        19.20        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JT 
       16.50        55.50        15.78        12.03        53.00        13.32 
TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XB TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XL 
       18.58        23.90        18.15        15.22        21.80        19.92 
TCGA-D8-A1XM TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1Y2 TCGA-D8-A27G 
       17.69        16.31        16.64        16.54        14.24        13.45 
TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 
        4.80        10.09        13.08        12.26        43.00        34.42 
TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14T TCGA-E2-A14V 
       46.59        40.11        44.68        40.96        75.98        34.26 
TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A15A TCGA-E2-A15E 
       32.02        69.34        69.96        23.24        23.34        20.71 
TCGA-E2-A15H TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1IG TCGA-E2-A1IH 
       12.92        51.39        53.62        87.22        70.36        33.73 
TCGA-E2-A1IJ TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LK TCGA-E2-A56Z 
       28.44        24.59        75.81        28.90         8.75         8.28 
TCGA-E2-A574 TCGA-E9-A1N6 TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 
       38.76        22.29        24.82        34.95         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI 
       11.15        48.23        46.65         6.58        46.59        47.64 
TCGA-E9-A228 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A54Y 
       42.25        38.37        41.03        12.33        29.72        23.84 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1J2 TCGA-EW-A1J3 
        0.79        25.81        26.40        12.20        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P5 
       15.68        28.77        29.85        40.41        52.96        23.11 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A423 
        6.15        13.94        19.96        55.00        52.73        10.16 
TCGA-EW-A6S9 TCGA-EW-A6SD TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DK TCGA-JL-A3YW 
       15.22        33.21       216.76        83.34        86.96        11.84 
TCGA-LD-A9QF TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A7T0 TCGA-MS-A51U TCGA-OL-A5RY 
       10.62        15.32        14.70        12.36        22.39        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66K TCGA-OL-A6VO TCGA-S3-A6ZG TCGA-S3-A6ZH 
       22.32        20.38        41.92        28.21        18.48        21.07 
TCGA-S3-AA10 TCGA-S3-AA14 TCGA-UL-AAZ6 TCGA-UU-A93S 
       19.27        17.39        17.03         3.81 

$`AMP PEAK 24(17Q12) WILD-TYPE`
TCGA-3C-AAAU TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE 
      129.14        48.56        48.36         8.52        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SP TCGA-A1-A0SQ 
       48.10        14.27        20.88        31.79        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
      143.15        18.02        78.41       121.94        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
       63.12        36.13       136.73        99.12        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CW 
       92.48        88.60       107.93        77.19        98.99       107.93 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO 
       67.33        33.76        61.58       101.72        89.36        80.28 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EW TCGA-A2-A0EX 
      118.45        79.76        74.40        72.00        61.94        24.72 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T0 
       99.19        54.64        27.12        44.88        50.43        17.52 
TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YF 
        8.38        20.52        17.46        18.90        25.28        50.47 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV 
       21.67        49.48        19.33        48.46        23.77        23.47 
TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       17.36        22.45        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       42.44        17.19        18.15        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RW 
       33.93        91.07        56.28        35.93        50.83         7.30 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 
       24.39        21.30        23.21        26.96        21.14        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA 
       35.31        34.29        35.47        30.61        37.45        35.67 
TCGA-A7-A0DB TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F 
       33.11        20.19        23.61        29.56        31.36        24.26 
TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF 
       23.74        21.73        11.34        10.59        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV 
       14.70        11.97        14.50        21.17        14.73        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y 
       13.02         1.02        17.98        53.06        31.00        26.01 
TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07L 
       17.03         9.01        19.99        18.97        12.00        32.05 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A08A 
        7.99        24.99        45.07        15.06        36.95         0.99 
TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08Z 
       28.96        12.00         9.99        31.00       112.08        40.01 
TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09K 
       33.01        41.98         9.99         1.02        50.04        29.98 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
        1.02        25.02        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A2B8 
       12.00        19.04        13.02        27.02        22.95         1.48 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       73.05        99.35        86.66        90.71        60.92        87.12 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       74.14        33.04        19.33        32.45         6.48        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 
       14.83        22.19        25.05        14.99        19.79        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS 
       23.24        24.79        29.26        16.80        14.53        19.33 
TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW 
       14.96        11.44        13.71        17.42        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS 
       12.26         1.68         0.03        20.19         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.33         0.33         2.96         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XN TCGA-AN-A0XO 
        6.90         0.36         0.33         0.33         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW 
        0.30         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       61.35        66.77        81.63        68.75        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       29.13        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A125 TCGA-AO-A126 
       65.10        26.24        50.24        62.04        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
      106.78       108.03        90.58        48.36        41.62        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A04L 
       14.73        82.62        70.39        17.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR 
       15.62         2.56        32.91        19.20       140.55         5.26 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ 
       84.10       109.02        75.22        98.93        55.86       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22       134.14       107.21       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00        97.68        98.33        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24M 
       99.32        17.23        37.81        94.29        33.73       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
       99.78       118.59       104.28       112.77        97.84       105.27 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A256 TCGA-AR-A2LE 
       32.58        98.76        99.62        93.30        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR 
       20.25        63.62        38.17        39.39        40.54        57.27 
TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I2 TCGA-B6-A0I5 
       73.35        33.30        38.96        10.59       143.38       281.29 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ 
      275.87       129.57        50.70        65.72       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
       18.77       127.33       165.76       129.07       140.88       255.68 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
      234.28        81.17        78.02       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.48        89.46       282.90       157.41        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 
       79.63        18.35        21.47       206.86       129.70        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A2IU TCGA-B6-A400 TCGA-B6-A408 TCGA-B6-A409 
       68.94        58.88       170.17         7.07        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 
      103.63        71.15        59.84        25.55        81.44        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       39.55        70.22        81.63        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV 
       72.23        75.48        74.14        76.60        53.95        49.94 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       44.02        89.06        23.44        38.01        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       78.28        17.26         3.22         2.56        38.47        67.86 
TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       70.88         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       46.19        32.58        24.49        24.43        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA 
       15.16        37.78        53.26        24.56        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HX 
       26.50        20.38         5.85         2.50        13.61        27.25 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M 
       32.91         4.90        35.93        20.12        90.84        72.56 
TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       55.63         7.36        51.16        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EY TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB 
       42.28        17.69        89.16        97.48        24.62       120.62 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FH TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR 
       33.17        74.73        36.92        55.00        45.63       144.59 
TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       28.14        38.60        57.83       130.16        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 
       20.12       109.28        20.88        18.64        23.51         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N 
        5.26         9.70        18.87        21.76         9.44        11.77 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A131 TCGA-C8-A134 
       12.66        12.66        12.66        48.53        13.51        12.59 
TCGA-C8-A1HE TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26Y 
       12.33        11.28         0.16        12.33        20.25        12.95 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-C8-A8HR 
        9.67         9.53        14.43        33.99        12.49        13.41 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 
       56.81        20.88        20.58        13.97        13.48        21.14 
TCGA-D8-A1J8 TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       14.17        18.15        18.90        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XC 
       14.70        17.79        16.73        25.74        27.58        12.39 
TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       17.16        14.73        14.50        55.30        16.41        15.85 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       12.99        15.16        43.04        15.32        15.52         9.93 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       14.14        17.42        16.04        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       16.41        13.48         1.61        12.53        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A108 TCGA-E2-A10A 
       21.67        16.18        12.66        25.22        27.52        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14R 
       37.51        28.44        28.87        47.15        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A154 
       33.17        43.33        31.96        18.51        63.62        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        14.79        25.05        22.82        17.29 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       21.63        18.21        55.63        53.92         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1AZ 
       11.05        50.79        19.56        56.94        14.07        76.57 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE 
       33.01        32.35        28.50        16.47        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1II TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       37.41        33.70        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LG 
       11.08        54.18        60.36        73.64        19.66        50.07 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX 
      106.75       102.61        43.04        26.99        34.55        43.56 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 
       30.61        34.92        34.29        17.69        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       36.82        34.16        36.20        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1R0 
       35.77        35.24        25.84        18.94         9.86        28.27 
TCGA-E9-A1R3 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG 
        2.56        45.01        32.09        40.24         1.12        21.27 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22E TCGA-E9-A22G 
       34.45        32.05        37.74        39.09        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.50        20.12         0.69        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       24.56         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A6HE TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       23.90        26.70        27.85        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 
       18.90        25.94        22.82        29.95        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       29.82        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       10.52        14.43        34.55        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GI-A2C8 
       17.49        23.51        16.77        24.99        31.30         7.40 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH 
      109.87        59.57        79.10        75.02        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       85.15       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
       18.12         2.60        62.47        11.57        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
        7.10        13.28        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR 
       17.06        14.47        14.79        22.26         2.63        16.08 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-LL-A9Q3 
       15.68         7.46        14.50        19.53        19.59        17.49 
TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       27.91         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A66H TCGA-OL-A66I 
       40.08        34.92        36.36        28.87        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ 
       65.62        42.77        26.04        17.36        14.07        19.73 
TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX 
       40.11         8.91        47.01        64.21        86.96         0.16 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 
        0.26         9.93        18.81        20.68        13.84        18.87 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       17.26        13.94        66.84        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                        0.03                         0.03 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                       245.1                        282.9 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                      26.270                       28.205 
[1] "0.0 - 245.1 (26.3)" "0.0 - 282.9 (28.2)"
[1] "hr=" "1.3"
D24V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 24(17Q12) MUTATED        21       18        1        1       120
  AMP PEAK 24(17Q12) WILD-TYPE      68       67        5        5       233
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 24(17Q12) MUTATED          83         1         49         10
  AMP PEAK 24(17Q12) WILD-TYPE       169         1        105         19
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 24(17Q12) MUTATED           20        5         0       2
  AMP PEAK 24(17Q12) WILD-TYPE         45       15         1      11
D24V3, multiclass
            clus
vv           AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  STAGE I                            21                           68
  STAGE IA                           18                           67
  STAGE IB                            1                            5
  STAGE II                            1                            5
  STAGE IIA                         120                          233
  STAGE IIB                          83                          169
  STAGE III                           1                            1
  STAGE IIIA                         49                          105
  STAGE IIIB                         10                           19
  STAGE IIIC                         20                           45
  STAGE IV                            5                           15
  STAGE TIS                           0                            1
  STAGE X                             2                           11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  AMP PEAK 24(17Q12) MUTATED    74 209  35  15
  AMP PEAK 24(17Q12) WILD-TYPE 202 415 101  25
D24V4, multiclass
    clus
vv   AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  T1                         74                          202
  T2                        209                          415
  T3                         35                          101
  T4                         15                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  AMP PEAK 24(17Q12) MUTATED   138 128  35  22
  AMP PEAK 24(17Q12) WILD-TYPE 369 230  84  55
D24V5, multiclass
    clus
vv   AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  N0                        138                          369
  N1                        128                          230
  N2                         35                           84
  N3                         22                           55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V6, binary
                              cls
clus                             0   1
  AMP PEAK 24(17Q12) MUTATED   289   6
  AMP PEAK 24(17Q12) WILD-TYPE 600  16
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(17Q12) MUTATED    289    6
  AMP PEAK 24(17Q12) WILD-TYPE  600   16
   clus
vv  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  0                        289                          600
  1                          6                           16
[1] 2 2
[1] FALSE
D24V7, binary
                              cls
clus                             0   1
  AMP PEAK 24(17Q12) MUTATED   325   8
  AMP PEAK 24(17Q12) WILD-TYPE 743   4
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(17Q12) MUTATED    325    8
  AMP PEAK 24(17Q12) WILD-TYPE  743    4
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  FEMALE                        325                          743
  MALE                            8                            4
[1] 2 2
[1] FALSE
D24V8, binary
                              cls
clus                             0   1
  AMP PEAK 24(17Q12) MUTATED   128 161
  AMP PEAK 24(17Q12) WILD-TYPE 301 357
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(17Q12) MUTATED    128  161
  AMP PEAK 24(17Q12) WILD-TYPE  301  357
     clus
vv    AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  NO                         128                          301
  YES                        161                          357
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  AMP PEAK 24(17Q12) MUTATED                            0
  AMP PEAK 24(17Q12) WILD-TYPE                          1
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 24(17Q12) MUTATED                             270
  AMP PEAK 24(17Q12) WILD-TYPE                           500
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 24(17Q12) MUTATED                               38
  AMP PEAK 24(17Q12) WILD-TYPE                            162
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 24(17Q12) MUTATED                     1                     3
  AMP PEAK 24(17Q12) WILD-TYPE                   5                     6
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 24(17Q12) MUTATED                                  6
  AMP PEAK 24(17Q12) WILD-TYPE                               23
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 24(17Q12) MUTATED                    4             11
  AMP PEAK 24(17Q12) WILD-TYPE                 13             36
D24V9, multiclass
                                  clus
vv                                 AMP PEAK 24(17Q12) MUTATED
  INFILTRATING CARCINOMA NOS                                0
  INFILTRATING DUCTAL CARCINOMA                           270
  INFILTRATING LOBULAR CARCINOMA                           38
  MEDULLARY CARCINOMA                                       1
  METAPLASTIC CARCINOMA                                     3
  MIXED HISTOLOGY (PLEASE SPECIFY)                          6
  MUCINOUS CARCINOMA                                        4
  OTHER  SPECIFY                                           11
                                  clus
vv                                 AMP PEAK 24(17Q12) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             500
  INFILTRATING LOBULAR CARCINOMA                            162
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       6
  MIXED HISTOLOGY (PLEASE SPECIFY)                           23
  MUCINOUS CARCINOMA                                         13
  OTHER  SPECIFY                                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 24(17Q12) MUTATED                                  1    30
  AMP PEAK 24(17Q12) WILD-TYPE                                0    30
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 24(17Q12) MUTATED                          52   210
  AMP PEAK 24(17Q12) WILD-TYPE                       129   535
D24V11, multiclass
                                  clus
vv                                 AMP PEAK 24(17Q12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                    30
  BLACK OR AFRICAN AMERICAN                                52
  WHITE                                                   210
                                  clus
vv                                 AMP PEAK 24(17Q12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      30
  BLACK OR AFRICAN AMERICAN                                 129
  WHITE                                                     535
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V12, binary
                              cls
clus                             0   1
  AMP PEAK 24(17Q12) MUTATED    12 263
  AMP PEAK 24(17Q12) WILD-TYPE  27 612
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(17Q12) MUTATED     12  263
  AMP PEAK 24(17Q12) WILD-TYPE   27  612
                        clus
vv                       AMP PEAK 24(17Q12) MUTATED
  HISPANIC OR LATINO                             12
  NOT HISPANIC OR LATINO                        263
                        clus
vv                       AMP PEAK 24(17Q12) WILD-TYPE
  HISPANIC OR LATINO                               27
  NOT HISPANIC OR LATINO                          612
[1] 2 2
[1] FALSE

Clustering(25) Variable = AMP PEAK 25(17Q23.1) MUTATION ANALYSIS
D25V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 25(17Q23.1) MUTATED   359  62
  AMP PEAK 25(17Q23.1) WILD-TYPE 558  85
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           421                            643 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                            62                             85 
$`AMP PEAK 25(17Q23.1) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SH 
      131.67        42.81        40.14        11.44         9.96        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04R TCGA-A2-A04U 
       13.68         7.96        39.32        28.01       121.94        87.25 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CX TCGA-A2-A0D2 
       55.43        36.13        75.25         5.19        56.81        33.76 
TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0SU 
       25.22        79.76        35.05        34.29        31.82        54.64 
TCGA-A2-A0SW TCGA-A2-A0T0 TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YG 
       44.88        17.52        49.84        20.75        32.55        21.90 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G0 
       48.46        31.73        23.77        17.36        60.72        20.25 
TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3XT TCGA-A2-A3XU 
       52.47        42.44        18.15       105.34        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CD 
       32.75        47.31        50.37        26.96        21.90        38.30 
TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A26H TCGA-A7-A26J 
       30.61        35.67        29.79        25.15        23.80        20.61 
TCGA-A7-A2KD TCGA-A7-A3J0 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF 
       22.32        10.29        14.93        13.74        14.50        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06X 
       14.73        12.10        13.02        17.98        29.03        31.00 
TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07G TCGA-A8-A07I 
        1.02        53.98         9.01        43.00        18.97        14.01 
TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 
       32.05        10.98         8.98         9.99        45.07        36.95 
TCGA-A8-A086 TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       13.02        33.01        19.96        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 
       31.00         0.99        33.01        30.97        17.95        12.00 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
        9.99        12.00        50.04        49.05        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09W TCGA-A8-A09X 
       33.07         1.02        25.02         8.98         0.99        14.01 
TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H 
        0.99        17.03        38.04         0.95        73.91         5.72 
TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A62V 
       26.04        33.04        14.66        24.13        25.05        11.44 
TCGA-AC-A6IV TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A 
       18.67         8.22        20.19         0.23         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0FD TCGA-AN-A0FT 
        1.78         1.71         9.96         0.16         6.44         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XR 
        0.33         0.36         0.33         0.33         5.36         0.33 
TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
        0.33         5.59        80.28        95.70        68.75        47.87 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0JB 
       32.78        21.40        52.18        26.04        20.32        50.70 
TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A12B TCGA-AO-A12E 
       26.24        62.04        71.80       115.27        98.27        57.30 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 
       61.87        70.39         0.53        24.79        26.93         5.65 
TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TY 
       32.52        32.91        98.33       109.02        98.93        55.86 
TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AK TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A24H 
       83.87       107.21       103.86        61.28        86.53       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       50.89        94.22         2.76       104.28       112.77        97.84 
TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
      105.30        98.66        89.00        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LR TCGA-B6-A0I9 
       93.83        86.53        54.21        66.15        57.27        12.13 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0RE TCGA-B6-A0RG 
       65.72       146.50        18.77       165.76       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RS TCGA-B6-A0RV TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0X1 
      212.25       100.70       157.41        79.63       113.79       245.10 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       43.59        73.51       170.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B4 
       70.16        62.93        20.45        25.55        63.09        39.16 
TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BW 
       32.02        43.53        61.51        75.48        45.57        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       49.05        41.75        89.06        90.97        45.83        77.98 
TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DP TCGA-BH-A0DZ TCGA-BH-A0E2 
       23.44        29.98        13.91        15.65        16.27        14.30 
TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
       23.08        26.50        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18Q 
       50.79        23.05         4.90        26.66        37.74        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EV TCGA-BH-A1EW 
       37.55        66.05        51.39        67.50        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1F2 TCGA-BH-A1FC TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
       49.58        31.53       114.15       122.89        36.92        63.35 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 
       45.63        72.07        26.14        38.60        83.31       130.16 
TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O 
       10.52        18.64         9.63        11.93        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 
       11.77        12.66        12.66        12.66        12.56         3.16 
TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK 
       12.92         4.08        10.92        11.34        11.28        12.03 
TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26X TCGA-C8-A26Z 
       10.42        12.33        12.95        12.33        12.36         8.28 
TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.67         0.03         9.50        24.56        12.95        13.02 
TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A1JB 
       19.46        56.81        13.25        13.97        14.17        55.50 
TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JT 
       15.78        12.03        53.00        20.09        20.12        13.32 
TCGA-D8-A1X7 TCGA-D8-A1X9 TCGA-D8-A1XB TCGA-D8-A1XF TCGA-D8-A1XM TCGA-D8-A1XQ 
       16.73        23.90        18.15        15.22        17.69        16.41 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1Y2 TCGA-D8-A27G TCGA-D8-A27H 
       16.31        16.64        16.54        14.24        13.45        13.05 
TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 
        4.80        10.09        12.53        12.26        43.00        34.42 
TCGA-E2-A10C TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14V 
       40.11        44.68        40.96        38.60        75.98        34.26 
TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A15A TCGA-E2-A15H 
       32.02        69.34        23.24        21.04        23.34        12.92 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B5 TCGA-E2-A1IE 
       14.07        51.39        53.62        87.22        32.35        77.65 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1LA TCGA-E2-A1LK TCGA-E2-A56Z 
       70.36        33.73        28.44        24.59         8.75         8.28 
TCGA-E2-A574 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1QZ 
       38.76        34.16        36.56        35.24         9.86        24.82 
TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RE 
       34.95         6.12         3.02        11.15        48.23        46.65 
TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A228 TCGA-E9-A22A 
        6.58        46.59        47.64        34.45        42.25        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       38.37        41.03        41.72        20.12         0.69        38.99 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       12.33        29.72        23.84         0.79        25.81        26.40 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OX 
       18.90        13.25        15.68        28.77        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1PB 
       29.85        40.41        52.96        29.82        23.11        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FV 
        6.15        13.94        34.55        19.96        52.73        25.91 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SD TCGA-GI-A2C8 
       17.49        10.16        15.22        16.77        33.21         7.40 
TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DK TCGA-GM-A2DO TCGA-GM-A3XL 
      109.87       216.76        83.34        86.96        85.35        69.30 
TCGA-HN-A2NL TCGA-LD-A7W5 TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A73Y 
        2.60         7.10        15.32        14.70        14.79        15.68 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OL-A5RZ TCGA-OL-A66K 
       19.53        12.36        27.91        22.39        22.32        41.92 
TCGA-OL-A66P TCGA-OL-A6VO TCGA-PL-A8LZ TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 
       14.07        28.21         9.93        18.48        21.07        19.27 
TCGA-UL-AAZ6 
       17.03 

$`AMP PEAK 25(17Q23.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE 
      129.14        48.56        48.36         8.52        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SP TCGA-A1-A0SQ 
       48.10        14.27        20.88        31.79        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W 
      143.15        18.02        78.41        73.84        63.12       101.98 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
      136.73        99.12        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D1 
      107.93        77.19        98.99       107.93        67.33        34.55 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       61.58       101.72        89.36        80.28       118.45        74.40 
TCGA-A2-A0ES TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV 
       72.00        61.94        24.72        63.29        99.19        27.12 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 
       50.43        44.28        17.13         8.38        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI 
       18.90        25.28        18.21        50.47        21.67        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A1G4 
       18.61        19.33        23.47        22.45        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       16.47       107.70        17.19        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       33.93        56.28        35.93        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       21.30        23.21        21.14        35.31        34.29        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H 
       37.45        33.11        31.73        20.19        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A3IY TCGA-A7-A3IZ 
       31.36        24.26        23.74        21.73        11.34        10.59 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SE TCGA-A7-A5ZW 
       11.28        13.41        14.70        11.97        21.17        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P 
       11.05        10.29         9.37        10.42         8.75        13.02 
TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A07E TCGA-A8-A07F 
        1.02        53.06        26.01        17.03        19.99        18.97 
TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A084 TCGA-A8-A08A 
       12.00         9.99         7.99        24.99        15.06         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       38.01        28.96        12.00       112.08        43.00        40.01 
TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09C TCGA-A8-A09T TCGA-A8-A09V 
       33.01        41.98         9.99         1.02        19.04        15.02 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-AC-A23E 
       12.00        19.04        13.02        21.04        27.02        22.95 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
        1.48        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3EH 
       60.92        87.12        74.14        19.33        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       16.31        14.83        22.19        14.99        16.57        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI 
       15.48        23.24        24.79        29.26        16.80        14.53 
TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A6IX 
       19.33        14.96        13.71        17.42        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        1.68         0.03         1.12         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS 
        0.33         0.33         7.36         7.46         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FX TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XS 
        6.90         0.33         0.33        12.33         0.30         0.33 
TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03U 
        0.33         5.33        61.35        66.77        81.63        58.95 
TCGA-AO-A03V TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC 
       29.13        37.48        22.36        53.03        21.53        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A125 
       72.00        76.77        65.10        50.24        55.33        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12F 
      108.72       106.78       108.03        90.58        64.04        48.36 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KT TCGA-AQ-A04L 
       41.62        40.57        14.73        82.62        17.79       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS 
       15.62         2.56        19.20       140.55         5.26        84.10 
TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 
       75.22        64.83       107.24        65.36       133.22       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
      125.16       108.36       101.00        97.68        98.33        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU 
       86.07        93.90        99.32        17.23        37.81        94.29 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24T 
       86.43        33.73       120.33        99.78       118.59       105.27 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A2LE TCGA-AR-A2LH 
       77.69        32.58        98.76        99.62       166.42        20.25 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN 
       63.62        38.17        39.39        40.54        73.35        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA 
       38.96        10.59        77.62       143.38       281.29       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN 
      129.57        50.70       112.37       233.62       127.33        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN 
      129.07       140.88       234.28        81.17        78.02       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WS 
      162.05       102.77       140.48        89.46       282.90        97.48 
TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 
      188.68        18.35        21.47       206.86       129.70        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A408 TCGA-B6-A409 
       68.94        58.88       101.52       139.17        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 
      103.63        71.15        59.84        81.44        40.83        39.55 
TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BD 
       70.22        81.63        84.13        51.68        37.22        18.21 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR 
       21.70        74.89        61.68        72.23        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0C1 TCGA-BH-A0DH TCGA-BH-A0DL TCGA-BH-A0DO 
       53.95        49.94        44.02        38.01        78.28        17.26 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 
        3.22         2.56        38.47        67.86        70.88         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       15.68         9.63        44.81        46.19        32.58        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK 
       53.26        24.56        41.00        52.96        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
        2.50        13.61         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M 
       44.81        32.91        35.93        20.12        90.84        72.56 
TCGA-BH-A18P TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       30.28         7.36        51.16        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 
       42.28        17.69        25.81        89.16        97.48        24.62 
TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU 
      120.62        33.17        74.73        55.00       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U 
       28.14        57.83        10.65         6.44        20.12       109.28 
TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
       20.88        23.51         5.26         9.70        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A131 
        9.44        11.77        12.66        12.66        48.53        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HJ TCGA-C8-A26V 
        1.87        12.59         4.11        12.33         0.16        20.25 
TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HQ 
       12.53        12.95         9.53        14.43        33.99        12.49 
TCGA-C8-A8HR TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 
       13.41        20.88        20.58        13.48        21.14        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH 
       14.17        17.49        16.50        18.15        18.90        14.01 
TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       18.97        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XC 
       14.70        18.58        17.79        25.74        27.58        12.39 
TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO 
       17.16        14.73        21.80        14.50        19.92        55.30 
TCGA-D8-A1XR TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 
       15.85        12.99        15.16        43.04        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27I TCGA-D8-A27K 
        9.93        14.14        17.42        16.04        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       16.41        13.48         1.61        13.08        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A108 TCGA-E2-A109 
       21.67        16.18        12.66        25.22        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q 
       40.41        37.51        28.44        28.87        47.15        38.24 
TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       33.17        43.33        31.96        18.51        63.62        69.96 
TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D 
       19.43        23.87        14.79        25.05        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       20.71        21.63        18.21        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A1AZ 
       20.58        11.05        50.79        19.56        56.94        76.57 
TCGA-E2-A1B4 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1II 
       33.01        28.50        16.47        37.25        37.41        33.70 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       59.18         3.88        22.19        60.99        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG 
       60.36        73.64        19.66        75.81        28.90        50.07 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX 
      106.75       102.61        43.04        26.99        34.55        43.56 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 
       30.61        34.92        34.29        17.69        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       36.82        22.29        36.20        39.55        41.62        35.77 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1RA TCGA-E9-A1RB 
       25.84        18.94        28.27         2.56        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RG TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22G 
       40.24         1.12        21.27        32.05        37.74        40.73 
TCGA-E9-A22H TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO 
       40.50         1.94         7.13        24.56         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A6HE 
       32.91        30.18        30.44        23.90        26.70        27.85 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J3 TCGA-EW-A1OV 
       12.20        39.72         8.48        18.21        16.57        25.94 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       41.13        39.78        18.48        30.08         7.86        18.90 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A2FR TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 
       10.52        14.43        55.00        22.09        34.03        23.51 
TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DD TCGA-GM-A2DF 
       24.99        31.30        59.57        79.10        75.02        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       72.10        85.15       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        66.38        72.03        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 
       62.47        11.84        11.57        21.24        13.22        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       10.62        24.95        32.75        29.23        25.05        17.06 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A740 
       14.47        22.26         2.63        16.08         7.46        14.50 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       19.59        17.49         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       58.62        40.08        34.92        36.36        28.87        24.72 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N 
       20.38        26.70        23.47        65.62        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD 
       17.36        19.73        40.11         8.91        47.01        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA11 
       86.96         0.16         0.26        18.81        20.68        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-V7-A7HQ 
       18.87        17.39        17.26        13.94         3.81        66.84 
TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       11.41        52.96        29.03        15.35        16.04       108.07 
TCGA-Z7-A8R6 
      107.05 

  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                          0.03                           0.03 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                        255.68                         282.90 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                         26.96                          28.27 
[1] "0.0 - 255.7 (27.0)" "0.0 - 282.9 (28.3)"
[1] "hr=" "1.3"
D25V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 25(17Q23.1) MUTATED        27       25        1        2       152
  AMP PEAK 25(17Q23.1) WILD-TYPE      62       60        5        4       201
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 25(17Q23.1) MUTATED         102         1         68         16
  AMP PEAK 25(17Q23.1) WILD-TYPE       150         1         86         13
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 25(17Q23.1) MUTATED           20        9         1       2
  AMP PEAK 25(17Q23.1) WILD-TYPE         45       11         0      11
D25V3, multiclass
            clus
vv           AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  STAGE I                              27                             62
  STAGE IA                             25                             60
  STAGE IB                              1                              5
  STAGE II                              2                              4
  STAGE IIA                           152                            201
  STAGE IIB                           102                            150
  STAGE III                             1                              1
  STAGE IIIA                           68                             86
  STAGE IIIB                           16                             13
  STAGE IIIC                           20                             45
  STAGE IV                              9                             11
  STAGE TIS                             1                              0
  STAGE X                               2                             11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 25(17Q23.1) MUTATED    81 276  49  18
  AMP PEAK 25(17Q23.1) WILD-TYPE 195 348  87  22
D25V4, multiclass
    clus
vv   AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  T1                           81                            195
  T2                          276                            348
  T3                           49                             87
  T4                           18                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 25(17Q23.1) MUTATED   195 146  53  24
  AMP PEAK 25(17Q23.1) WILD-TYPE 312 212  66  53
D25V5, multiclass
    clus
vv   AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  N0                          195                            312
  N1                          146                            212
  N2                           53                             66
  N3                           24                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V6, binary
                                cls
clus                               0   1
  AMP PEAK 25(17Q23.1) MUTATED   373  10
  AMP PEAK 25(17Q23.1) WILD-TYPE 516  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17Q23.1) MUTATED    373   10
  AMP PEAK 25(17Q23.1) WILD-TYPE  516   12
   clus
vv  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  0                          373                            516
  1                           10                             12
[1] 2 2
[1] FALSE
D25V7, binary
                                cls
clus                               0   1
  AMP PEAK 25(17Q23.1) MUTATED   414  12
  AMP PEAK 25(17Q23.1) WILD-TYPE 654   0
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17Q23.1) MUTATED    414   12
  AMP PEAK 25(17Q23.1) WILD-TYPE  654    0
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  FEMALE                          414                            654
  MALE                             12                              0
[1] 2 2
[1] FALSE
D25V8, binary
                                cls
clus                               0   1
  AMP PEAK 25(17Q23.1) MUTATED   170 200
  AMP PEAK 25(17Q23.1) WILD-TYPE 259 318
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17Q23.1) MUTATED    170  200
  AMP PEAK 25(17Q23.1) WILD-TYPE  259  318
     clus
vv    AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  NO                           170                            259
  YES                          200                            318
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 25(17Q23.1) MUTATED                            1
  AMP PEAK 25(17Q23.1) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 25(17Q23.1) MUTATED                             341
  AMP PEAK 25(17Q23.1) WILD-TYPE                           429
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 25(17Q23.1) MUTATED                               44
  AMP PEAK 25(17Q23.1) WILD-TYPE                            156
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 25(17Q23.1) MUTATED                     3                     6
  AMP PEAK 25(17Q23.1) WILD-TYPE                   3                     3
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 25(17Q23.1) MUTATED                                 12
  AMP PEAK 25(17Q23.1) WILD-TYPE                               17
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 25(17Q23.1) MUTATED                    5             13
  AMP PEAK 25(17Q23.1) WILD-TYPE                 12             34
D25V9, multiclass
                                  clus
vv                                 AMP PEAK 25(17Q23.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             341
  INFILTRATING LOBULAR CARCINOMA                             44
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       6
  MIXED HISTOLOGY (PLEASE SPECIFY)                           12
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             13
                                  clus
vv                                 AMP PEAK 25(17Q23.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               429
  INFILTRATING LOBULAR CARCINOMA                              156
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             17
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 25(17Q23.1) MUTATED                                  0    29
  AMP PEAK 25(17Q23.1) WILD-TYPE                                1    31
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 25(17Q23.1) MUTATED                          75   272
  AMP PEAK 25(17Q23.1) WILD-TYPE                       106   473
D25V11, multiclass
                                  clus
vv                                 AMP PEAK 25(17Q23.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      29
  BLACK OR AFRICAN AMERICAN                                  75
  WHITE                                                     272
                                  clus
vv                                 AMP PEAK 25(17Q23.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        31
  BLACK OR AFRICAN AMERICAN                                   106
  WHITE                                                       473
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V12, binary
                                cls
clus                               0   1
  AMP PEAK 25(17Q23.1) MUTATED    16 335
  AMP PEAK 25(17Q23.1) WILD-TYPE  23 540
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17Q23.1) MUTATED     16  335
  AMP PEAK 25(17Q23.1) WILD-TYPE   23  540
                        clus
vv                       AMP PEAK 25(17Q23.1) MUTATED
  HISPANIC OR LATINO                               16
  NOT HISPANIC OR LATINO                          335
                        clus
vv                       AMP PEAK 25(17Q23.1) WILD-TYPE
  HISPANIC OR LATINO                                 23
  NOT HISPANIC OR LATINO                            540
[1] 2 2
[1] FALSE

Clustering(26) Variable = AMP PEAK 26(19P13.12) MUTATION ANALYSIS
D26V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 26(19P13.12) MUTATED   206  24
  AMP PEAK 26(19P13.12) WILD-TYPE 711 123
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                            230                             834 
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                             24                             123 
$`AMP PEAK 26(19P13.12) MUTATED`
TCGA-4H-AAAK TCGA-A1-A0SF TCGA-A1-A0SK TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04U 
       11.44        48.10        31.79        18.02        78.41        87.25 
TCGA-A2-A0CT TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU 
       75.25        34.55        33.76        79.76        35.05        34.29 
TCGA-A2-A0EY TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T3 TCGA-A2-A0T6 TCGA-A2-A0YH 
       63.29        50.43        17.52        49.84        18.90        21.67 
TCGA-A2-A0YJ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3Y0 
       18.61        20.25        19.20        91.07        29.98        50.83 
TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DB 
       21.14        38.30        35.31        30.61        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A26E TCGA-A7-A2KD TCGA-A7-A3J0 TCGA-A7-A4SE 
       29.79        20.19        31.36        22.32        10.29        21.17 
TCGA-A7-A5ZV TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A085 TCGA-A8-A08F 
       12.10         1.02        17.98        31.00        36.95        33.01 
TCGA-A8-A08R TCGA-A8-A08X TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09B TCGA-A8-A09E 
        0.99        43.00        17.95        12.00        12.00        49.05 
TCGA-A8-A09M TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2BK 
       33.07        21.04        27.02        22.95        73.91        73.05 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3OD TCGA-AC-A3W5 TCGA-AC-A5EI TCGA-AC-A5XU 
       26.04        74.14        14.83        16.57        14.53        14.96 
TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A8OP TCGA-AN-A03Y TCGA-AN-A0AJ TCGA-AN-A0AM 
       17.42        13.58        20.19         0.33         9.96         0.16 
TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FX TCGA-AN-A0XN 
        0.33         6.44         7.00         7.59         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03P TCGA-AO-A0J4 TCGA-AO-A0J7 
        0.33         5.59        80.28        95.70        52.18        20.32 
TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A1KR 
       55.33       115.27        90.58        98.27        64.04        70.39 
TCGA-AO-A1KS TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0U0 TCGA-AR-A0U1 
        0.53         2.56        32.91       140.55        65.36       133.22 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K 
      101.00       103.86        61.28        86.53        86.43        50.89 
TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A255 
      104.28        97.84       105.30        32.58        98.66        71.05 
TCGA-AR-A256 TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-B6-A0I2 TCGA-B6-A0IH 
       93.83        40.54        57.27        73.35       143.38       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IQ TCGA-B6-A0RU TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      233.62       140.88       282.90        21.47       113.79       206.86 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A401 TCGA-B6-A402 TCGA-BH-A0AU TCGA-BH-A0B6 
       43.59        73.51        85.35        70.16        62.93        81.63 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BJ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 
       51.68        37.22        21.70        41.75        44.02        90.97 
TCGA-BH-A0DD TCGA-BH-A0DO TCGA-BH-A0E9 TCGA-BH-A0H0 TCGA-BH-A0HQ TCGA-BH-A18N 
       45.83        17.26        46.19        15.16        36.85        37.74 
TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1FC TCGA-BH-A208 
       55.63         7.36        51.16        91.99       114.15        57.83 
TCGA-BH-A209 TCGA-BH-A5IZ TCGA-BH-A6R9 TCGA-BH-A8FZ TCGA-C8-A12L TCGA-C8-A12Q 
      130.16        18.64         5.26        18.87        11.93        12.66 
TCGA-C8-A12V TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A27B TCGA-D8-A13Z TCGA-D8-A140 
       12.66        12.56         3.16        14.43        20.88        13.25 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JF TCGA-D8-A1JH 
       14.17        13.48        19.20        14.17        12.03        14.01 
TCGA-D8-A1JN TCGA-D8-A1X6 TCGA-D8-A1XJ TCGA-D8-A1XU TCGA-D8-A1XZ TCGA-D8-A1Y2 
       20.38        17.79        21.80        12.99        15.32        14.24 
TCGA-D8-A27W TCGA-E2-A10B TCGA-E2-A14N TCGA-E2-A14R TCGA-E2-A14X TCGA-E2-A14Y 
       12.26        37.51        47.15        38.60        31.96        69.34 
TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A15E TCGA-E2-A15M TCGA-E2-A1B1 TCGA-E2-A1IH 
       63.62        23.24        20.71        11.05        87.22        33.73 
TCGA-E2-A1II TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU 
       33.70        28.90        50.07        38.76        34.29        17.69 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NF TCGA-E9-A1R6 TCGA-E9-A1RA 
       34.16        36.20        36.56        35.24        11.15        45.01 
TCGA-E9-A1RD TCGA-E9-A1RH TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 
        1.12        46.59        38.37        41.72        40.73        20.12 
TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A3QA TCGA-E9-A5FK 
        0.69         1.94         7.13        12.33        30.18        26.70 
TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1P4 TCGA-EW-A1PB 
        0.79        26.40        28.77        29.85        29.82        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A2FR TCGA-EW-A423 TCGA-EW-A6SB TCGA-GI-A2C9 
        6.15        13.94        55.00        10.16        24.99       109.87 
TCGA-GM-A2DD TCGA-HN-A2NL TCGA-LD-A7W6 TCGA-LL-A440 TCGA-LL-A5YN TCGA-LL-A6FQ 
       75.02         2.60        13.28        24.95        14.70         2.63 
TCGA-LL-A73Y TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-MS-A51U TCGA-OL-A5RW TCGA-OL-A97C 
       15.68        19.59        17.49        22.39        36.36         8.91 
TCGA-PL-A8LZ TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-UU-A93S TCGA-W8-A86G 
        9.93        18.48        20.68        19.27         3.81        11.41 
TCGA-WT-AB41 TCGA-XX-A89A 
       52.96        16.04 

$`AMP PEAK 26(19P13.12) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        14.37        43.43        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
       20.88        13.68         7.96        39.32        28.01        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W 
       18.21       143.15       121.94        73.84        63.12       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
       55.43        36.13       136.73        99.12        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV 
       92.48        88.60       107.93        77.19         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
      107.93        56.81        67.33        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV 
       89.36        80.28       118.45        74.40        72.00        31.82 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       61.94        24.72        99.19        54.64        27.12        44.88 
TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T7 
       44.28        17.13         8.38        20.52        17.46        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI 
       32.55        25.28        18.21        50.47        21.90        49.48 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       60.72        22.45        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       39.65        33.93        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.37         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S3 TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A13D TCGA-A7-A13F 
       21.90        34.29        35.47        37.45        31.73        25.15 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       23.61        29.56        24.26        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D 
       11.97        14.93        13.74        14.50        17.92        14.73 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02        13.02        53.06        29.03        26.01         1.02 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
       17.03        53.98         9.01        43.00        19.99        18.97 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 
        8.98         7.99        24.99         9.99        45.07        15.06 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I 
       13.02         0.99        38.01        28.96        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T 
       37.05         9.99        31.00        31.00        33.01       112.08 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A 
       40.01        33.01        30.97        41.98         9.99         9.99 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q 
        1.02        50.04        45.07        29.98         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       19.04        13.02         0.99        17.03        38.04         0.95 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
        5.72         1.48        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       60.92        87.12        33.04        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN 
        6.48        16.31        22.19        24.13        25.05        14.99 
TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH 
       19.79        15.48        23.24        24.79        29.26        16.80 
TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO 
       19.33        11.44        13.71        18.67        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        8.22         0.03         1.12         1.32         2.30         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.23         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FF TCGA-AN-A0FJ 
        7.36         7.46         0.33         0.33         5.65         7.96 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FY 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        0.33         5.36        12.33         0.30         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03R 
        0.33         5.33        61.35        66.77        81.63        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 
       47.87        58.95        29.13        32.78        21.40        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       37.48        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       72.00        76.77        65.10        26.24        50.24        62.04 
TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12E 
       71.80        99.25       108.72       106.78       108.03        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       48.36        41.62        40.57        14.73        82.62        61.87 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       17.79        24.79        26.93       130.09         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT 
       32.52        19.20        98.33         5.26        84.10       109.02 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U2 
       75.22        98.93        64.83        55.86       107.24        83.87 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AL TCGA-AR-A1AM 
      134.14       107.21       125.16       108.36        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS 
       96.00        86.07        93.90        99.32        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       94.29        33.73       160.90        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24X 
      118.59         2.76       112.77       105.27        77.69        98.76 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH 
       89.00        99.62        93.30        85.64       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       86.53        54.21        66.15        63.62        38.17        39.39 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0I9 
       33.30        38.96        10.59        77.62       281.29        12.13 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IK 
      275.87       129.57        50.70        65.72       146.50        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG 
      127.33        84.59       165.76       129.07       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO 
      212.25       234.28        81.17        78.02       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.48       100.70        89.46       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
      188.68        79.63        18.35       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       68.94        58.88       101.52       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV 
        7.07        68.12        18.84       103.63        71.15        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        40.83        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       39.16        70.22        84.13        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       61.51        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        53.95        45.57        49.94        77.95        49.05 
TCGA-BH-A0C3 TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       89.06        77.98        23.44        38.01        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       78.28        15.65         3.22         2.56        38.47        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        32.58        24.49        31.00        24.43        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       10.78        37.78        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       52.96        26.50        20.38         5.85         2.50        13.61 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18P 
       35.93        20.12        90.84        26.66        72.56        30.28 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET 
       37.55        66.05        51.39        67.50       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD 
       31.53        89.16        97.48        24.62       120.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07       144.59        72.07        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       83.31        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 
       20.88        23.51         9.63         9.70        21.76         9.44 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12U TCGA-C8-A12W 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.66        48.53        13.51         1.87        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
        4.11         4.08        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
        0.16        12.03        10.42        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       20.25        12.53        12.36        12.95         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 
        9.53         0.03         9.50        24.56        33.99        12.95 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A141 
       13.02        12.49        13.41        19.46        56.81        20.58 
TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       13.97        21.14        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       18.15        18.90        53.00        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        19.40        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       18.58        16.73        25.74        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XL 
       12.39        17.16        15.22        14.73        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        55.30        16.41        15.85        16.31        16.64 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y3 
       15.16        43.04        16.54        15.52         9.93        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48         4.80         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.53        33.37        18.51        21.67        16.18        12.66 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       25.22        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       40.11        28.44        28.87        44.68        40.96        38.24 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Z 
       33.17        75.98        43.33        34.26        32.02        18.51 
TCGA-E2-A152 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 
       69.96        19.43        21.04        23.87        14.79        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       23.34        22.82        17.29        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        50.79        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B4 
       56.94        14.07        51.39        76.57        53.62        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       32.35        28.50        16.47        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       70.36        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA 
       11.08        54.18        60.36        73.64        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 
       75.81       106.75       102.61         8.75        43.04        26.99 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E9-A1N3 
       34.55        43.56         8.28        30.61        34.92        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       32.88        36.82        22.29        39.55        41.62        35.77 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC 
        2.56         6.12         3.02        48.23        32.09        40.24 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
       46.65         6.58        21.27        47.64        34.45        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A247 
       42.25        37.74        39.09        41.03        40.50        38.99 
TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 
       24.56        29.72         9.47        38.07        32.91        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       23.90        23.84        25.81        27.85        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
        8.48        18.21        18.90        13.25        16.57        15.68 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        22.82        29.95        40.41        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       52.96        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        14.43        34.55        19.96        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA 
       22.09        34.03        17.49        23.51        15.22        16.77 
TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       31.30        33.21         7.40        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB 
       69.30        66.38        72.03        13.55        18.12        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A9QF 
       11.84        11.57        21.24        13.22         7.10        10.62 
TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO 
       32.75        29.23        25.05        17.06        15.32        14.47 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ 
       14.79        22.26        16.08         7.46        14.50        19.53 
TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       12.36        27.91         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        40.08        34.92        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       20.38        26.70        23.47        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       26.04        17.36        14.07        28.21        19.73        40.11 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-A6ZF 
       47.01        64.21        86.96         0.16         0.26        18.81 
TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       21.07        13.84        18.87        17.39        17.26        13.94 
TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-WT-AB44 TCGA-XX-A899 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       17.03        66.84        29.03        15.35       108.07       107.05 

  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                           0.16                            0.03 
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                         282.90                          281.29 
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                         29.915                          27.055 
[1] "0.2 - 282.9 (29.9)" "0.0 - 281.3 (27.1)"
[1] "hr=" "1.4"
D26V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 26(19P13.12) MUTATED        16       18        2        2        86
  AMP PEAK 26(19P13.12) WILD-TYPE      73       67        4        4       267
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 26(19P13.12) MUTATED          57         0         29          5
  AMP PEAK 26(19P13.12) WILD-TYPE       195         2        125         24
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 26(19P13.12) MUTATED           12        1         0       0
  AMP PEAK 26(19P13.12) WILD-TYPE         53       19         1      13
D26V3, multiclass
            clus
vv           AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  STAGE I                               16                              73
  STAGE IA                              18                              67
  STAGE IB                               2                               4
  STAGE II                               2                               4
  STAGE IIA                             86                             267
  STAGE IIB                             57                             195
  STAGE III                              0                               2
  STAGE IIIA                            29                             125
  STAGE IIIB                             5                              24
  STAGE IIIC                            12                              53
  STAGE IV                               1                              19
  STAGE TIS                              0                               1
  STAGE X                                0                              13
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  AMP PEAK 26(19P13.12) MUTATED    50 143  30   7
  AMP PEAK 26(19P13.12) WILD-TYPE 226 481 106  33
D26V4, multiclass
    clus
vv   AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  T1                            50                             226
  T2                           143                             481
  T3                            30                             106
  T4                             7                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  AMP PEAK 26(19P13.12) MUTATED   125  68  24  13
  AMP PEAK 26(19P13.12) WILD-TYPE 382 290  95  64
D26V5, multiclass
    clus
vv   AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  N0                           125                             382
  N1                            68                             290
  N2                            24                              95
  N3                            13                              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V6, binary
                                 cls
clus                                0   1
  AMP PEAK 26(19P13.12) MUTATED   192   1
  AMP PEAK 26(19P13.12) WILD-TYPE 697  21
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(19P13.12) MUTATED    192    1
  AMP PEAK 26(19P13.12) WILD-TYPE  697   21
   clus
vv  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  0                           192                             697
  1                             1                              21
[1] 2 2
[1] FALSE
D26V7, binary
                                 cls
clus                                0   1
  AMP PEAK 26(19P13.12) MUTATED   225   5
  AMP PEAK 26(19P13.12) WILD-TYPE 843   7
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(19P13.12) MUTATED    225    5
  AMP PEAK 26(19P13.12) WILD-TYPE  843    7
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  FEMALE                           225                             843
  MALE                               5                               7
[1] 2 2
[1] FALSE
D26V8, binary
                                 cls
clus                                0   1
  AMP PEAK 26(19P13.12) MUTATED    86 123
  AMP PEAK 26(19P13.12) WILD-TYPE 343 395
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(19P13.12) MUTATED     86  123
  AMP PEAK 26(19P13.12) WILD-TYPE  343  395
     clus
vv    AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  NO                             86                             343
  YES                           123                             395
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  AMP PEAK 26(19P13.12) MUTATED                            1
  AMP PEAK 26(19P13.12) WILD-TYPE                          0
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 26(19P13.12) MUTATED                             169
  AMP PEAK 26(19P13.12) WILD-TYPE                           601
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 26(19P13.12) MUTATED                               33
  AMP PEAK 26(19P13.12) WILD-TYPE                            167
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 26(19P13.12) MUTATED                     4                     3
  AMP PEAK 26(19P13.12) WILD-TYPE                   2                     6
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 26(19P13.12) MUTATED                                  6
  AMP PEAK 26(19P13.12) WILD-TYPE                               23
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 26(19P13.12) MUTATED                    2             12
  AMP PEAK 26(19P13.12) WILD-TYPE                 15             35
D26V9, multiclass
                                  clus
vv                                 AMP PEAK 26(19P13.12) MUTATED
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              169
  INFILTRATING LOBULAR CARCINOMA                              33
  MEDULLARY CARCINOMA                                          4
  METAPLASTIC CARCINOMA                                        3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             6
  MUCINOUS CARCINOMA                                           2
  OTHER  SPECIFY                                              12
                                  clus
vv                                 AMP PEAK 26(19P13.12) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     0
  INFILTRATING DUCTAL CARCINOMA                                601
  INFILTRATING LOBULAR CARCINOMA                               167
  MEDULLARY CARCINOMA                                            2
  METAPLASTIC CARCINOMA                                          6
  MIXED HISTOLOGY (PLEASE SPECIFY)                              23
  MUCINOUS CARCINOMA                                            15
  OTHER  SPECIFY                                                35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 26(19P13.12) MUTATED                                  0     8
  AMP PEAK 26(19P13.12) WILD-TYPE                                1    52
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 26(19P13.12) MUTATED                          47   160
  AMP PEAK 26(19P13.12) WILD-TYPE                       134   585
D26V11, multiclass
                                  clus
vv                                 AMP PEAK 26(19P13.12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        8
  BLACK OR AFRICAN AMERICAN                                   47
  WHITE                                                      160
                                  clus
vv                                 AMP PEAK 26(19P13.12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         52
  BLACK OR AFRICAN AMERICAN                                    134
  WHITE                                                        585
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V12, binary
                                 cls
clus                                0   1
  AMP PEAK 26(19P13.12) MUTATED     8 187
  AMP PEAK 26(19P13.12) WILD-TYPE  31 688
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(19P13.12) MUTATED      8  187
  AMP PEAK 26(19P13.12) WILD-TYPE   31  688
                        clus
vv                       AMP PEAK 26(19P13.12) MUTATED
  HISPANIC OR LATINO                                 8
  NOT HISPANIC OR LATINO                           187
                        clus
vv                       AMP PEAK 26(19P13.12) WILD-TYPE
  HISPANIC OR LATINO                                  31
  NOT HISPANIC OR LATINO                             688
[1] 2 2
[1] FALSE

Clustering(27) Variable = AMP PEAK 27(19Q12) MUTATION ANALYSIS
D27V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 27(19Q12) MUTATED   245  37
  AMP PEAK 27(19Q12) WILD-TYPE 672 110
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         282                          782 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                          37                          110 
$`AMP PEAK 27(19Q12) MUTATED`
TCGA-4H-AAAK TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A2-A04P TCGA-A2-A04Q 
       11.44        48.10        13.68        31.79        18.02        78.41 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CM TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0D2 
       73.84        87.25        24.79        75.25       107.93        33.76 
TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       79.76        35.05        34.29        24.72        63.29        99.19 
TCGA-A2-A0SX TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T6 TCGA-A2-A0YH TCGA-A2-A0YM 
       50.43         8.38        49.84        18.90        21.67        31.73 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XX TCGA-A2-A3XY 
       20.25        19.20        33.93        29.98        47.31        35.93 
TCGA-A2-A3Y0 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       50.83        21.14        38.30        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26E TCGA-A7-A26I TCGA-A7-A3J0 TCGA-A7-A4SD 
       31.73        20.19        31.36        21.73        10.29        14.50 
TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06X 
       21.17        14.73        10.29        10.42        13.02        31.00 
TCGA-A8-A075 TCGA-A8-A07B TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A08O 
       17.03        43.00         9.99         8.98        24.99        31.00 
TCGA-A8-A08R TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09B 
        0.99        43.00        30.97        17.95        12.00        12.00 
TCGA-A8-A09E TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A23G 
       49.05        33.07        25.02        27.02        22.95        73.91 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3W5 TCGA-AC-A5EI TCGA-AC-A5XU TCGA-AC-A62Y 
       26.04        74.14        16.57        14.53        14.96        17.42 
TCGA-AC-A6IW TCGA-AC-A8OQ TCGA-AC-A8OS TCGA-AN-A03Y TCGA-AN-A0AK TCGA-AN-A0AM 
       13.58         1.12         2.30         0.33         7.36         0.16 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        7.96         7.00         7.04         0.36         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03O TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J7 
        0.33         5.59        81.63        32.78        52.18        20.32 
TCGA-AO-A0JE TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       76.77        55.33       115.27       108.03        90.58        98.27 
TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A54N TCGA-AQ-A54O 
       64.04        48.36        70.39         0.53         2.56        32.91 
TCGA-AR-A0TQ TCGA-AR-A0TW TCGA-AR-A0U0 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AV 
       98.33        98.93        65.36       108.36       101.00        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
       86.53        86.43        50.89        77.69       105.30        32.58 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LQ 
       98.66        89.00        99.62        71.05        93.83        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0IH TCGA-B6-A0IJ 
       57.27        73.35        77.62       143.38       112.37       233.62 
TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WX TCGA-B6-A0WY 
      165.76       140.88       100.70       282.90        21.47       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A400 TCGA-B6-A401 
      206.86       245.10        43.59        73.51         7.07        85.35 
TCGA-B6-A402 TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0BA 
       70.16        62.93        20.45        39.55        81.63        37.22 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BW TCGA-BH-A0C0 
       61.51        21.70        74.89        76.60        77.95        41.75 
TCGA-BH-A0C1 TCGA-BH-A0DD TCGA-BH-A0DO TCGA-BH-A0E9 TCGA-BH-A0GY TCGA-BH-A0H0 
       44.02        45.83        17.26        46.19        30.35        15.16 
TCGA-BH-A0H7 TCGA-BH-A0HQ TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18Q 
       23.08        36.85        90.84        26.66        37.74        55.63 
TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1EW 
        7.36        51.16        67.50        91.99        12.00        55.69 
TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A6R9 
       97.48       114.15        38.60        57.83       130.16         5.26 
TCGA-C8-A12L TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A130 TCGA-C8-A1HK TCGA-C8-A1HM 
       11.93        12.66        12.66         3.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A274 TCGA-C8-A27B TCGA-D8-A13Z 
       12.95        12.95         8.28         9.53        14.43        20.88 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JF 
       13.97        14.17        13.48        19.20        14.17        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JU TCGA-D8-A1X6 
       53.00        14.01        20.09        20.38        14.70        17.79 
TCGA-D8-A1XJ TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27V 
       21.80        12.99        43.04        13.48         4.80        12.53 
TCGA-D8-A27W TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14R TCGA-E2-A14X 
       12.26        37.51        40.11        47.15        38.60        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A15E 
       69.34        18.51        63.62        69.96        23.24        20.71 
TCGA-E2-A15F TCGA-E2-A15M TCGA-E2-A1AZ TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1LG 
       21.63        11.05        76.57        33.70        22.19        50.07 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       38.76        34.29        17.69        34.16        36.20        36.56 
TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RI TCGA-E9-A22B TCGA-E9-A22D 
       11.15        45.01         1.12        47.64        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 
       41.72        40.73        20.12         0.69         1.94         7.13 
TCGA-E9-A295 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UP 
       12.33        30.18        30.44        26.70         0.79        26.40 
TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC 
       28.77        29.85        29.82         7.86        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PH TCGA-EW-A423 TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-EW-A6SD 
       13.94        19.96        10.16        15.22        24.99        33.21 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LL-A5YN 
       83.34        75.02        70.85         2.60        11.84        14.70 
TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A8F5 TCGA-LL-A9Q3 
       14.79         2.63        16.08        15.68        19.59        17.49 
TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A97C TCGA-PL-A8LZ 
       58.52        36.36        20.38        23.47         8.91         9.93 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA12 TCGA-UL-AAZ6 TCGA-W8-A86G 
       18.48        21.07        19.27        18.87        17.03        11.41 

$`AMP PEAK 27(19Q12) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        14.37        43.43        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ 
       20.88         7.96        39.32        28.01        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      143.15       121.94        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12       114.81        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 
       77.19         5.19        98.99        56.81        67.33        34.55 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       61.58        25.22       101.72        89.36        80.28       118.45 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0SU TCGA-A2-A0SV 
       74.40        72.00        31.82        61.94        54.64        27.12 
TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.88        44.28        17.52        17.13        20.52        17.46 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV 
       49.48        18.61        19.33        48.46        23.77        23.47 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       17.36        60.72        22.45        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
      107.70        42.44        17.19        18.15       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ 
       36.23        39.65        91.07        32.75        56.28        50.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S3 
        7.30        24.39        21.30        23.21        26.96        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A13F 
       35.31        34.29        35.47        30.61        37.45        25.15 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J 
       23.61        29.56        24.26        23.74        23.80        20.61 
TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       22.32        11.34        10.59        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A5ZW 
       11.97        14.93        13.74        17.92        12.10        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       11.05         9.37         8.75        13.02         1.02        17.98 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 
       53.06        29.03        26.01         1.02        53.98         9.01 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       19.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 
       10.98         7.99         9.99        45.07        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G 
       13.02         0.99        38.01        28.96        33.01        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T 
       12.00        37.05         9.99        31.00        33.01       112.08 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09C 
       40.01        33.01        41.98         9.99         9.99         1.02 
TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T 
       50.04        45.07        29.98         1.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H 
       21.04         0.99        17.03        38.04         0.95         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
        1.48        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       60.92        87.12        33.04        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM 
        6.48        16.31        14.83        22.19        24.13        25.05 
TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE 
       14.99        19.79        15.48        23.24        24.79        29.26 
TCGA-AC-A5EH TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX 
       16.80        19.33        11.44        13.71        18.67        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AN-A03X 
        1.68         8.22         0.03        20.19         1.32         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.23         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        9.96         7.46         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FZ 
        5.65         7.59         7.17         6.90         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03P 
        0.33         5.33        80.28        61.35        66.77        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 
       68.75        47.87        58.95        29.13        21.40        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       37.48        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM 
       72.00        65.10        26.24        50.24        62.04        71.80 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H 
       99.25       108.72       106.78        57.30        41.62        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J 
       14.73        82.62        61.87        17.79        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TP 
      130.09         5.65        15.62        32.52        19.20       140.55 
TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TY 
        5.26        84.10       109.02        75.22        64.83        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
      107.24       133.22        83.87       134.14       107.21       125.16 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      103.86        97.68        98.33        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24H 
       99.32        17.23        37.81        94.29        33.73       160.90 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A254 
      112.77        97.84       105.27        98.76        93.30        85.64 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      166.42        20.25        86.53        54.21        66.15        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I5 
       38.17        39.39        33.30        38.96        10.59       281.29 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       12.13       275.87       129.57        50.70        65.72       146.50 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG 
       18.77       127.33        84.59       129.07       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO 
      212.25       234.28        81.17        78.02       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      102.77       140.48        89.46       157.41        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
       79.63        18.35       129.70        28.27        68.94        58.88 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A408 TCGA-B6-A409 
      101.52       139.17       170.17        37.87        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
      103.63        71.15        59.84        25.55        63.09        81.44 
TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC 
       40.83        39.16        70.22        84.13        51.68        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       18.21        43.53        61.68        72.23        75.48        74.14 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0C7 
       53.95        45.57        49.94        49.05        89.06        90.97 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        23.44        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        38.47        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H3 
       32.58        24.49        31.00        24.43        10.78        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       53.26        24.56        41.00        52.96        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        5.85         2.50        13.61        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M 
       23.05        32.91         4.90        35.93        20.12        72.56 
TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1ES TCGA-BH-A1ET 
       30.28        37.55        66.05        51.39       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 
       42.28        49.58        17.69        25.81        31.53        89.16 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       24.62       120.62        33.17        74.73       122.89        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       28.14        26.14        83.31        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 
       10.52       109.28        20.88        18.64        23.51         9.63 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N 
        9.70        18.87        21.76         9.44        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        11.77        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.56        13.51         1.87        12.59        12.92         4.11 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
        4.08        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HL TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A273 
       10.42        12.33        20.25        12.53        12.36         9.67 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        0.03         9.50        24.56        33.99        12.95        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 
       12.49        13.41        19.46        56.81        13.25        20.58 
TCGA-D8-A146 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       21.14        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JP 
       18.90        18.97        20.09        20.12        19.40        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       12.20        13.32        18.58        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG 
       27.58        18.15        12.39        17.16        15.22        14.73 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.50        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       16.31        16.64        15.16        16.54        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27R 
       13.05        14.43        48.03        16.41         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       13.08        33.37        18.51        21.67        16.18        12.66 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       25.22        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S 
       28.44        28.87        44.68        40.96        38.24        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A154 TCGA-E2-A155 
       75.98        43.33        34.26        32.02        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       23.87        14.79        25.05        23.34        22.82        17.29 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 
       50.79        19.56        56.94        14.07        51.39        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD 
       87.22        33.01        32.35        28.50        16.47        37.25 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK 
       77.65        37.41        70.36        33.73        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 
        3.88        60.99        11.08        54.18        60.36        73.64 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
        8.75        43.04        26.99        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 
       30.61        34.92        34.82        32.88        36.82        22.29 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF 
        3.02        48.23        32.09        40.24        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       21.27        46.59        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22H TCGA-E9-A247 TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT 
       39.09        40.50        38.99        24.56        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5UO TCGA-E9-A6HE 
       38.07        32.91        23.90        23.84        25.81        27.85 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ 
       16.57        15.68        25.94        22.82        29.95        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        52.96        23.11        18.48        30.08 
TCGA-EW-A1PA TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FS 
       18.90        10.52        14.43        34.55        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 TCGA-EW-A6SA 
       25.91        22.09        34.03        17.49        23.51        16.77 
TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       31.30         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
       85.35       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U 
       72.03        13.55        18.12        62.47        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 
       13.22         7.10        13.28        10.62        24.95        32.75 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A6FP 
       29.23        25.05        17.06        15.32        14.47        22.26 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U 
        7.46        14.50        19.53        12.36        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
        2.10        36.30        31.99        58.62        40.08        34.92 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K 
       28.87        24.72        22.32        26.70        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ 
       42.77        26.04        17.36        14.07        28.21        19.73 
TCGA-OL-A6VR TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY 
       40.11        47.01        64.21        86.96         0.16         0.26 
TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       18.81        20.68        13.84        17.39        17.26        13.94 
TCGA-UU-A93S TCGA-V7-A7HQ TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
        3.81        66.84        52.96        29.03        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                        0.16                         0.03 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                      282.90                       281.29 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                      29.915                       27.185 
[1] "0.2 - 282.9 (29.9)" "0.0 - 281.3 (27.2)"
[1] "hr=" "1.1"
D27V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 27(19Q12) MUTATED        23       18        2        2       121
  AMP PEAK 27(19Q12) WILD-TYPE      66       67        4        4       232
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 27(19Q12) MUTATED          56         0         36          8
  AMP PEAK 27(19Q12) WILD-TYPE       196         2        118         21
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 27(19Q12) MUTATED           12        3         0       0
  AMP PEAK 27(19Q12) WILD-TYPE         53       17         1      13
D27V3, multiclass
            clus
vv           AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  STAGE I                            23                           66
  STAGE IA                           18                           67
  STAGE IB                            2                            4
  STAGE II                            2                            4
  STAGE IIA                         121                          232
  STAGE IIB                          56                          196
  STAGE III                           0                            2
  STAGE IIIA                         36                          118
  STAGE IIIB                          8                           21
  STAGE IIIC                         12                           53
  STAGE IV                            3                           17
  STAGE TIS                           0                            1
  STAGE X                             0                           13
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  AMP PEAK 27(19Q12) MUTATED    65 175  34  10
  AMP PEAK 27(19Q12) WILD-TYPE 211 449 102  30
D27V4, multiclass
    clus
vv   AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  T1                         65                          211
  T2                        175                          449
  T3                         34                          102
  T4                         10                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  AMP PEAK 27(19Q12) MUTATED   155  86  28  14
  AMP PEAK 27(19Q12) WILD-TYPE 352 272  91  63
D27V5, multiclass
    clus
vv   AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  N0                        155                          352
  N1                         86                          272
  N2                         28                           91
  N3                         14                           63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V6, binary
                              cls
clus                             0   1
  AMP PEAK 27(19Q12) MUTATED   245   4
  AMP PEAK 27(19Q12) WILD-TYPE 644  18
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED    245    4
  AMP PEAK 27(19Q12) WILD-TYPE  644   18
   clus
vv  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  0                        245                          644
  1                          4                           18
[1] 2 2
[1] FALSE
D27V7, binary
                              cls
clus                             0   1
  AMP PEAK 27(19Q12) MUTATED   280   4
  AMP PEAK 27(19Q12) WILD-TYPE 788   8
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED    280    4
  AMP PEAK 27(19Q12) WILD-TYPE  788    8
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  FEMALE                        280                          788
  MALE                            4                            8
[1] 2 2
[1] FALSE
D27V8, binary
                              cls
clus                             0   1
  AMP PEAK 27(19Q12) MUTATED   115 137
  AMP PEAK 27(19Q12) WILD-TYPE 314 381
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED    115  137
  AMP PEAK 27(19Q12) WILD-TYPE  314  381
     clus
vv    AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  NO                         115                          314
  YES                        137                          381
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  AMP PEAK 27(19Q12) MUTATED                            0
  AMP PEAK 27(19Q12) WILD-TYPE                          1
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 27(19Q12) MUTATED                             226
  AMP PEAK 27(19Q12) WILD-TYPE                           544
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 27(19Q12) MUTATED                               30
  AMP PEAK 27(19Q12) WILD-TYPE                            170
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 27(19Q12) MUTATED                     6                     3
  AMP PEAK 27(19Q12) WILD-TYPE                   0                     6
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 27(19Q12) MUTATED                                  6
  AMP PEAK 27(19Q12) WILD-TYPE                               23
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 27(19Q12) MUTATED                    2             11
  AMP PEAK 27(19Q12) WILD-TYPE                 15             36
D27V9, multiclass
                                  clus
vv                                 AMP PEAK 27(19Q12) MUTATED
  INFILTRATING CARCINOMA NOS                                0
  INFILTRATING DUCTAL CARCINOMA                           226
  INFILTRATING LOBULAR CARCINOMA                           30
  MEDULLARY CARCINOMA                                       6
  METAPLASTIC CARCINOMA                                     3
  MIXED HISTOLOGY (PLEASE SPECIFY)                          6
  MUCINOUS CARCINOMA                                        2
  OTHER  SPECIFY                                           11
                                  clus
vv                                 AMP PEAK 27(19Q12) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             544
  INFILTRATING LOBULAR CARCINOMA                            170
  MEDULLARY CARCINOMA                                         0
  METAPLASTIC CARCINOMA                                       6
  MIXED HISTOLOGY (PLEASE SPECIFY)                           23
  MUCINOUS CARCINOMA                                         15
  OTHER  SPECIFY                                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 27(19Q12) MUTATED                                  0    13
  AMP PEAK 27(19Q12) WILD-TYPE                                1    47
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 27(19Q12) MUTATED                          63   188
  AMP PEAK 27(19Q12) WILD-TYPE                       118   557
D27V11, multiclass
                                  clus
vv                                 AMP PEAK 27(19Q12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                    13
  BLACK OR AFRICAN AMERICAN                                63
  WHITE                                                   188
                                  clus
vv                                 AMP PEAK 27(19Q12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      47
  BLACK OR AFRICAN AMERICAN                                 118
  WHITE                                                     557
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V12, binary
                              cls
clus                             0   1
  AMP PEAK 27(19Q12) MUTATED    11 230
  AMP PEAK 27(19Q12) WILD-TYPE  28 645
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED     11  230
  AMP PEAK 27(19Q12) WILD-TYPE   28  645
                        clus
vv                       AMP PEAK 27(19Q12) MUTATED
  HISPANIC OR LATINO                             11
  NOT HISPANIC OR LATINO                        230
                        clus
vv                       AMP PEAK 27(19Q12) WILD-TYPE
  HISPANIC OR LATINO                               28
  NOT HISPANIC OR LATINO                          645
[1] 2 2
[1] FALSE

Clustering(28) Variable = AMP PEAK 28(19Q13.42) MUTATION ANALYSIS
D28V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 28(19Q13.42) MUTATED   239  34
  AMP PEAK 28(19Q13.42) WILD-TYPE 678 113
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                            273                             791 
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                             34                             113 
$`AMP PEAK 28(19Q13.42) MUTATED`
TCGA-4H-AAAK TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A1-A0SQ 
       11.44        48.10        13.68        31.79        28.01        18.21 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CT 
       18.02        78.41        73.84        87.25       101.98        75.25 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU 
       67.33        33.76        25.22        79.76        35.05        34.29 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T6 
       24.72        63.29        17.52         8.38        49.84        18.90 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A1G0 TCGA-A2-A25D TCGA-A2-A3XS TCGA-A2-A3XU 
       21.90        21.67        20.25        18.15        33.93        29.98 
TCGA-A2-A3Y0 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       50.83        21.14        38.30        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A26E TCGA-A7-A26I TCGA-A7-A3J0 TCGA-A7-A4SD TCGA-A7-A56D 
       31.73        31.36        21.73        10.29        14.50        14.73 
TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A075 
       12.10        10.29        10.42        13.02        17.98        17.03 
TCGA-A8-A07B TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A08F 
       43.00         8.98        24.99         9.99        45.07        33.01 
TCGA-A8-A08I TCGA-A8-A08O TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 
       12.00        31.00        43.00        30.97        17.95        12.00 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09Q TCGA-A8-A0A6 TCGA-A8-A0A7 
        9.99        12.00        49.05        25.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A5EI 
       27.02        22.95        73.91        26.04        74.14        14.53 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A8OS TCGA-AN-A03Y TCGA-AN-A04C 
       14.96        17.42        13.58         2.30         0.33         1.78 
TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0FK TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        7.36         0.16         7.00         0.36         0.33         0.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03V 
        5.59        80.28        61.35        81.63        95.70        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J7 TCGA-AO-A0JE TCGA-AO-A124 TCGA-AO-A128 TCGA-AO-A12A 
       32.78        20.32        76.77       115.27       106.78        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KR 
       98.27        64.04        48.36        41.62        61.87        70.39 
TCGA-AO-A1KS TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TW 
        0.53         2.56        32.91        98.33       109.02        98.93 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24Q 
       61.28        86.53        86.43        50.89        94.22       104.28 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A255 TCGA-AR-A2LQ 
      105.30        32.58        98.66        89.00        71.05        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-B6-A0I2 TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IN 
       57.27        73.35       143.38       112.37       233.62        84.59 
TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WZ TCGA-B6-A1KC 
      165.76       140.88       100.70       282.90       206.86        43.59 
TCGA-B6-A1KI TCGA-B6-A401 TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0B3 TCGA-BH-A0B6 
       73.51        85.35        62.93        20.45        39.55        81.63 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BP 
       51.68        37.22        61.51        21.70        74.89        75.48 
TCGA-BH-A0BT TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DD TCGA-BH-A0DO TCGA-BH-A0E0 
       45.57        41.75        44.02        45.83        17.26         4.41 
TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0GY TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HQ 
        9.63        46.19        30.35        15.16        23.08        36.85 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18U TCGA-BH-A1EN 
       90.84        26.66        37.74        55.63        51.39        67.50 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1FD TCGA-BH-A1FM 
       91.99       113.82        12.00        55.69        33.17        45.63 
TCGA-BH-A1FN TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A6R9 TCGA-C8-A12L TCGA-C8-A12V 
       72.07        38.60        57.83         5.26        11.93        12.66 
TCGA-C8-A12W TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
       12.66        48.53         3.16        12.03        12.33        12.95 
TCGA-C8-A26W TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-D8-A142 
       12.53         8.28         9.67         9.53         0.03        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JL 
       14.17        13.48        14.17        12.03        14.01        20.09 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1XD 
       20.38        21.01        14.70        18.58        17.79        17.16 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XZ 
       21.80        14.50        16.41        12.99        43.04        15.32 
TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W TCGA-E2-A10B TCGA-E2-A10C 
        4.80        10.09        12.53        12.26        37.51        40.11 
TCGA-E2-A14Q TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A159 
       38.24        31.96        69.34        69.96        23.24        25.05 
TCGA-E2-A15F TCGA-E2-A15M TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1II TCGA-E2-A1IN 
       21.63        11.05        14.07        76.57        33.70        22.19 
TCGA-E2-A1IO TCGA-E2-A1LG TCGA-E2-A576 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NG 
       60.99        50.07        34.29        34.16        36.20        25.84 
TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI 
       11.15        45.01         1.12         6.58        46.59        47.64 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS 
       38.37        41.03        41.72         7.13        12.33        29.72 
TCGA-E9-A3X8 TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OV 
       30.44        26.70         0.79        26.40        28.77        25.94 
TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A423 
       29.82         7.86        18.90        13.94        14.43        10.16 
TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SD TCGA-GM-A2D9 TCGA-GM-A2DC TCGA-GM-A2DD 
       16.77        24.99        33.21        59.57        83.34        75.02 
TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A7SZ TCGA-LL-A9Q3 TCGA-MS-A51U 
       14.79         2.63        15.68        19.53        17.49        22.39 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH 
        8.91        47.01         9.93        18.81        18.48        21.07 
TCGA-S3-AA10 TCGA-UL-AAZ6 TCGA-W8-A86G 
       19.27        17.03        11.41 

$`AMP PEAK 28(19Q13.42) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        14.37        43.43        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A2-A04N TCGA-A2-A04R 
       20.88         7.96        39.32        19.20       143.15       121.94 
TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM 
       63.12        55.43        36.13       136.73        99.12        24.79 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU 
      114.81        92.48        88.60       107.93        77.19         5.19 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0EM 
       98.99       107.93        56.81        34.55        61.58       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV 
       89.36        80.28       118.45        74.40        72.00        31.82 
TCGA-A2-A0EW TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       61.94        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T7 TCGA-A2-A0YC 
       44.28        17.13        20.52        17.46        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       25.28        18.21        50.47        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       22.45        19.20        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       42.44        17.19       105.34        10.59        36.23        39.65 
TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       91.07        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S3 
        7.30        24.39        21.30        23.21        26.96        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A13E 
       35.31        34.29        35.47        30.61        37.45        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H 
       25.15        23.61        29.56        24.26        23.74        23.80 
TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        22.32        11.34        10.59        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF 
       14.70        11.97        14.93        13.74        21.17        17.92 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06Q 
       10.72        11.05         9.37         8.75        13.02         1.02 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 
       53.06        29.03        31.00        26.01         1.02        53.98 
TCGA-A8-A079 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
        9.01        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A084 TCGA-A8-A085 
       32.05         9.99        10.98         7.99        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J 
       13.02         0.99        38.01        28.96        19.96        37.05 
TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z 
        9.99        31.00         0.99        33.01       112.08        40.01 
TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09I 
       33.01        41.98         9.99         1.02        50.04        45.07 
TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       29.98        33.07         1.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0AB 
        0.99        14.01        12.00        19.04        13.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       38.04         0.95         5.72         1.48        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2QH 
       40.57        86.66        90.71        60.92        87.12        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       22.19        24.13        25.05        14.99        16.57        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5XS 
       15.48        23.24        24.79        29.26        16.80        19.33 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       11.44        13.71        18.67        12.26         1.68         8.22 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AN-A03X TCGA-AN-A041 
        0.03        20.19         1.12         1.32         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL 
        0.33         0.62         2.96         1.71         9.96         7.46 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FZ 
        7.59         7.17         6.90         7.04         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03N TCGA-AO-A03R TCGA-AO-A03T 
        0.33         0.33         5.33        66.77        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 
       58.95        21.40        52.18        26.04        37.48        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF 
       53.03        21.53        50.70        50.86        72.00        65.10 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A125 
       26.24        50.24        62.04        55.33        71.80        99.25 
TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
      108.72       108.03        57.30        40.57        14.73        82.62 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       17.79        24.79        26.93       130.09         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV 
       32.52        19.20       140.55         5.26        84.10        75.22 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       64.83        55.86       107.24        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
      134.14       107.21       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
       97.68        98.33        96.00        86.07        93.90        99.32 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24M 
       17.23        37.81        94.29        33.73       160.90       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
       99.78       118.59         2.76       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A256 
       77.69        98.76        99.62        93.30        85.64        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      166.42        20.25        86.53        54.21        66.15        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       38.17        39.39        33.30        38.96        10.59        77.62 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
      281.29        12.13       275.87       129.57        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG 
      146.50        18.77       127.33       129.07       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO 
      212.25       234.28        81.17        78.02       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      102.77       140.48        89.46       157.41        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X0 TCGA-B6-A0X1 
       79.63        18.35        21.47       113.79       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU 
       28.27        68.94        58.88       101.52       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
       37.87         7.07        70.16        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 
       71.15        59.84        25.55        63.09        81.44        40.83 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       39.16        70.22        84.13        32.02        18.21        43.53 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV 
       61.68        72.23        74.14        76.60        53.95        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DG 
       77.95        49.05        89.06        90.97        77.98        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        29.98        13.91        78.28        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 
        2.56        38.47        67.86        70.88        16.27        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
       14.30        44.81        32.58        24.49        31.00        24.43 
TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA 
       10.78        37.78        53.26        24.56        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU 
       26.50        20.38         5.85         2.50        13.61        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05        32.91         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       20.12        72.56        30.28        37.55        66.05         7.36 
TCGA-BH-A18V TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       51.16        82.85        42.28        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC 
       31.53        89.16        97.48        24.62       120.62       114.15 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR 
       74.73       122.89        36.92        63.35        55.00       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O 
       72.07        28.14        26.14        83.31       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
        6.44        20.12        10.52       109.28        20.88        18.64 
TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
       23.51         9.63         9.70        18.87        21.76         9.44 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.66        12.56        13.51         1.87        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
        4.11         4.08        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Y 
        0.16        10.42        12.33        20.25        12.36        12.95 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.50        24.56        14.43        33.99        12.95        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       12.49        13.41        19.46        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       20.58        21.14        19.20        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ 
       15.78        18.15        18.90        53.00        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1X7 TCGA-D8-A1X8 
       20.12        19.40        12.20        13.32        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       19.92        17.69        55.30        15.85        16.31        16.64 
TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       15.16        16.54        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       16.41        13.48         1.61        13.08        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 
       21.67        16.18        12.66        25.22        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       27.52        46.59        40.41        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       44.68        40.96        38.60        33.17        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A155 
       34.26        32.02        18.51        63.62        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        14.79        23.34        22.82        17.29        20.71 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 
       50.79        19.56        56.94        51.39        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE 
       33.01        32.35        28.50        16.47        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       37.41        70.36        33.73        28.44        59.18         3.88 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA 
       11.08        54.18        60.36        73.64        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       26.99        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 
       38.76        17.69        34.82        32.88        36.82        22.29 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NH 
       36.56        39.55        41.62        35.77        35.24        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RG 
        3.02        48.23        32.09        40.24        46.65        21.27 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22G 
       34.45        32.05        42.25        37.74        39.09        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A24A 
       40.50        20.12         0.69        38.99         1.94        24.56 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A54Y 
        9.47        38.07        32.91        30.18        23.90        23.84 
TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       25.81        27.85        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OW TCGA-EW-A1OX 
       18.90        13.25        16.57        15.68        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 
       29.85        40.41        41.13        39.78        52.96        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PG 
       18.48        30.08        19.99         6.15        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GI-A2C9 
       17.49        23.51        15.22        31.30         7.40       109.87 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
      216.76        79.10        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
      115.69       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
        2.60        62.47        11.84        11.57        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
        7.10        13.28        10.62        24.95        32.75        29.23 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP 
       25.05        17.06        15.32        14.70        14.47        22.26 
TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LQ-A4E4 
       16.08         7.46        14.50        12.36        19.59        27.91 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
        2.10        36.30        58.52        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       34.92        36.36        28.87        24.72        22.32        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N 
       26.70        23.47        65.62        41.92        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-PE-A5DD 
       17.36        14.07        28.21        19.73        40.11        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 
       86.96         0.16         0.26        20.68        13.84        18.87 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-WT-AB41 
       17.39        17.26        13.94         3.81        66.84        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35        16.04       108.07       107.05 

  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                           0.03                            0.03 
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                         282.90                          281.29 
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                          28.01                           27.85 
[1] "0.0 - 282.9 (28.0)" "0.0 - 281.3 (27.9)"
[1] "hr=" "1"  
D28V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 28(19Q13.42) MUTATED        23       20        2        3       100
  AMP PEAK 28(19Q13.42) WILD-TYPE      66       65        4        3       253
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 28(19Q13.42) MUTATED          61         0         37          9
  AMP PEAK 28(19Q13.42) WILD-TYPE       191         2        117         20
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 28(19Q13.42) MUTATED           16        3         0       2
  AMP PEAK 28(19Q13.42) WILD-TYPE         49       17         1      11
D28V3, multiclass
            clus
vv           AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  STAGE I                               23                              66
  STAGE IA                              20                              65
  STAGE IB                               2                               4
  STAGE II                               3                               3
  STAGE IIA                            100                             253
  STAGE IIB                             61                             191
  STAGE III                              0                               2
  STAGE IIIA                            37                             117
  STAGE IIIB                             9                              20
  STAGE IIIC                            16                              49
  STAGE IV                               3                              17
  STAGE TIS                              0                               1
  STAGE X                                2                              11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  AMP PEAK 28(19Q13.42) MUTATED    63 174  29  10
  AMP PEAK 28(19Q13.42) WILD-TYPE 213 450 107  30
D28V4, multiclass
    clus
vv   AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  T1                            63                             213
  T2                           174                             450
  T3                            29                             107
  T4                            10                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  AMP PEAK 28(19Q13.42) MUTATED   140  84  30  18
  AMP PEAK 28(19Q13.42) WILD-TYPE 367 274  89  59
D28V5, multiclass
    clus
vv   AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  N0                           140                             367
  N1                            84                             274
  N2                            30                              89
  N3                            18                              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V6, binary
                                 cls
clus                                0   1
  AMP PEAK 28(19Q13.42) MUTATED   245   3
  AMP PEAK 28(19Q13.42) WILD-TYPE 644  19
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 28(19Q13.42) MUTATED    245    3
  AMP PEAK 28(19Q13.42) WILD-TYPE  644   19
   clus
vv  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  0                           245                             644
  1                             3                              19
[1] 2 2
[1] FALSE
D28V7, binary
                                 cls
clus                                0   1
  AMP PEAK 28(19Q13.42) MUTATED   270   6
  AMP PEAK 28(19Q13.42) WILD-TYPE 798   6
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 28(19Q13.42) MUTATED    270    6
  AMP PEAK 28(19Q13.42) WILD-TYPE  798    6
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  FEMALE                           270                             798
  MALE                               6                               6
[1] 2 2
[1] FALSE
D28V8, binary
                                 cls
clus                                0   1
  AMP PEAK 28(19Q13.42) MUTATED   109 130
  AMP PEAK 28(19Q13.42) WILD-TYPE 320 388
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 28(19Q13.42) MUTATED    109  130
  AMP PEAK 28(19Q13.42) WILD-TYPE  320  388
     clus
vv    AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  NO                            109                             320
  YES                           130                             388
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  AMP PEAK 28(19Q13.42) MUTATED                            1
  AMP PEAK 28(19Q13.42) WILD-TYPE                          0
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 28(19Q13.42) MUTATED                             217
  AMP PEAK 28(19Q13.42) WILD-TYPE                           553
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 28(19Q13.42) MUTATED                               33
  AMP PEAK 28(19Q13.42) WILD-TYPE                            167
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 28(19Q13.42) MUTATED                     2                     3
  AMP PEAK 28(19Q13.42) WILD-TYPE                   4                     6
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 28(19Q13.42) MUTATED                                  5
  AMP PEAK 28(19Q13.42) WILD-TYPE                               24
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 28(19Q13.42) MUTATED                    2             13
  AMP PEAK 28(19Q13.42) WILD-TYPE                 15             34
D28V9, multiclass
                                  clus
vv                                 AMP PEAK 28(19Q13.42) MUTATED
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              217
  INFILTRATING LOBULAR CARCINOMA                              33
  MEDULLARY CARCINOMA                                          2
  METAPLASTIC CARCINOMA                                        3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             5
  MUCINOUS CARCINOMA                                           2
  OTHER  SPECIFY                                              13
                                  clus
vv                                 AMP PEAK 28(19Q13.42) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     0
  INFILTRATING DUCTAL CARCINOMA                                553
  INFILTRATING LOBULAR CARCINOMA                               167
  MEDULLARY CARCINOMA                                            4
  METAPLASTIC CARCINOMA                                          6
  MIXED HISTOLOGY (PLEASE SPECIFY)                              24
  MUCINOUS CARCINOMA                                            15
  OTHER  SPECIFY                                                34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 28(19Q13.42) MUTATED                                  0    16
  AMP PEAK 28(19Q13.42) WILD-TYPE                                1    44
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 28(19Q13.42) MUTATED                          43   195
  AMP PEAK 28(19Q13.42) WILD-TYPE                       138   550
D28V11, multiclass
                                  clus
vv                                 AMP PEAK 28(19Q13.42) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       16
  BLACK OR AFRICAN AMERICAN                                   43
  WHITE                                                      195
                                  clus
vv                                 AMP PEAK 28(19Q13.42) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         44
  BLACK OR AFRICAN AMERICAN                                    138
  WHITE                                                        550
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V12, binary
                                 cls
clus                                0   1
  AMP PEAK 28(19Q13.42) MUTATED    12 218
  AMP PEAK 28(19Q13.42) WILD-TYPE  27 657
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 28(19Q13.42) MUTATED     12  218
  AMP PEAK 28(19Q13.42) WILD-TYPE   27  657
                        clus
vv                       AMP PEAK 28(19Q13.42) MUTATED
  HISPANIC OR LATINO                                12
  NOT HISPANIC OR LATINO                           218
                        clus
vv                       AMP PEAK 28(19Q13.42) WILD-TYPE
  HISPANIC OR LATINO                                  27
  NOT HISPANIC OR LATINO                             657
[1] 2 2
[1] FALSE

Clustering(29) Variable = AMP PEAK 29(20Q13.2) MUTATION ANALYSIS
D29V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 29(20Q13.2) MUTATED   467  74
  AMP PEAK 29(20Q13.2) WILD-TYPE 450  73
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                           541                            523 
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                            74                             73 
$`AMP PEAK 29(20Q13.2) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SF 
      129.14       131.67        42.81         9.96        14.37        48.10 
TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN 
       14.27        20.88        13.68        31.79         7.96        39.32 
TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04W 
       28.01        19.20        18.21       121.94        73.84       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CS TCGA-A2-A0CT 
       55.43        36.13        99.12        24.79        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 
        5.19        98.99       107.93        56.81        67.33        33.76 
TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EY 
       25.22        79.76        35.05        34.29        31.82        63.29 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T7 
       27.12        44.88        50.43         8.38        49.84        20.75 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YT 
       25.28        18.21        21.90        21.67        18.61        23.77 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A25E 
       17.36        60.72        20.25        19.20        42.44       105.34 
TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A4RX 
       36.23        33.93        91.07        47.31        35.93        24.39 
TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       21.14        38.30        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26G TCGA-A7-A26J 
       29.79        31.73        20.19        25.15        23.74        20.61 
TCGA-A7-A2KD TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       22.32        14.70        14.93        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R 
       14.73        12.10        10.29        13.02         1.02        17.98 
TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       29.03        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       18.97        32.05        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G 
       45.07        36.95        13.02        38.01        33.01        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S 
       12.00        37.05         9.99        31.00         0.99        33.01 
TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 
       43.00        33.01        30.97        17.95        41.98        12.00 
TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K 
        9.99         1.02        50.04        49.05        45.07        29.98 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A0A1 TCGA-A8-A0A7 TCGA-A8-A0A9 
       33.07         1.02         8.98        12.00         0.99        27.02 
TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A2FO 
        0.95        73.91         5.72        99.35        26.04        74.14 
TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3QQ TCGA-AC-A3W5 TCGA-AC-A5EH TCGA-AC-A5EI 
       33.04        14.66        24.13        16.57        16.80        14.53 
TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A6NO 
       19.33        14.96        11.44        17.42        13.58         1.68 
TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A04A 
       20.19         1.12         0.33         0.33         0.23         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FD 
        1.78         1.71         9.96         0.16         0.33         6.44 
TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN 
        7.04         0.36         0.33         0.33         5.36         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O 
       12.33         0.30        80.28        61.35        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J7 TCGA-AO-A0J9 
       95.70        47.87        29.13        32.78        20.32        53.03 
TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A0JM 
       50.70        72.00        76.77        50.24        55.33        71.80 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F 
      106.78       108.03        90.58        98.27        57.30        48.36 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04L 
       82.62        61.87         0.53        17.79        24.79       130.09 
TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TT 
        5.65        15.62        32.91        19.20        98.33       109.02 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U1 
       75.22        98.93        64.83        55.86       107.24       133.22 
TCGA-AR-A0U2 TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AN TCGA-AR-A1AP TCGA-AR-A1AU 
       83.87       108.36       103.86        96.00        93.90        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24Q 
       61.28        86.53        33.73       160.90        94.22       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 
      112.77        97.84       105.30        32.58        98.66        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LK 
       99.62        93.30        85.64        71.05        93.83        54.21 
TCGA-AR-A2LL TCGA-AR-A2LO TCGA-AR-A2LR TCGA-AR-A5QM TCGA-B6-A0I1 TCGA-B6-A0I2 
       66.15        39.39        57.27        73.35        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ 
      281.29        12.13       129.57        65.72       112.37       233.62 
TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RL 
      165.76       140.88       255.68        68.45       212.25        81.17 
TCGA-B6-A0RO TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A1KF 
      162.05       282.90        79.63       113.79        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
       73.51       139.17         7.07        85.35        70.16        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B3 
       18.84       103.63        62.93        20.45        25.55        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BF TCGA-BH-A0BL TCGA-BH-A0BP 
       39.16        81.63        37.22        43.53        74.89        75.48 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DD 
       45.57        49.94        49.05        41.75        44.02        45.83 
TCGA-BH-A0DG TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E9 
       23.44        78.28         3.22         4.41        14.30        46.19 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HB 
       31.00        24.43        30.35        23.08        41.00        26.50 
TCGA-BH-A0HI TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       20.38        36.85        12.89        27.25        50.79         5.59 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18N TCGA-BH-A18Q 
       42.35        44.81        90.84        26.66        37.74        55.63 
TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       37.55         7.36        51.39        51.16        67.50        91.99 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F2 TCGA-BH-A1F6 
       42.28        12.00        55.69        49.58        31.53        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FE TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A204 
       24.62        74.73        45.63        72.07        26.14        83.31 
TCGA-BH-A208 TCGA-BH-A28Q TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 
       57.83         6.44        18.64        23.51         9.63         5.26 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.93        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       12.66        48.53         3.16        13.51         1.87        12.59 
TCGA-C8-A138 TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26Y 
        4.08        11.34        11.28        12.33        12.95        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M8 
        8.28         9.67         9.53         9.50        24.56        12.95 
TCGA-C8-A8HP TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A142 
       13.02        13.41        56.81        20.88        13.25        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JB 
       14.17        13.48        21.14        19.20        14.17        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JP TCGA-D8-A1JT TCGA-D8-A1X5 TCGA-D8-A1X9 
       18.97        20.12        21.01        13.32        18.58        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XK 
       27.58        18.15        17.16        15.22        21.80        14.50 
TCGA-D8-A1XL TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY 
       19.92        16.41        16.31        12.99        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27L 
       15.32        15.52         9.93        13.05        14.43        16.41 
TCGA-D8-A27R TCGA-D8-A27W TCGA-D8-A73U TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A109 
       10.09        12.26        16.18        25.22        43.00        46.59 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14S 
       37.51        40.11        44.68        40.96        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A152 
       75.98        34.26        31.96        69.34        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15E 
       23.24        19.43        25.05        23.34        22.82        20.71 
TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15K TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15R 
       21.63        12.92         9.04        11.05        50.79        56.94 
TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IH 
       14.07        76.57        53.62        37.25        77.65        33.73 
TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LH 
       33.70        22.19        60.99        60.36        19.66       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
      102.61         8.75        43.04         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 
       38.76        34.29        17.69        36.82        22.29        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1QZ 
       36.20        36.56        35.77        35.24         9.86        24.82 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       45.01        32.09        40.24        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       46.59        34.45        37.74        38.37        41.03        41.72 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS 
        0.69        38.99         1.94         7.13        12.33        29.72 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1IY TCGA-EW-A1J3 
       23.84        26.70         0.79        26.40         8.48        16.57 
TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P5 
       15.68        28.77        29.85        40.41        41.13        23.11 
TCGA-EW-A1P6 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PF TCGA-EW-A1PH 
       18.48        18.90        19.99         6.15        14.43        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-EW-A423 
       55.00        52.73        25.91        22.09        17.49        10.16 
TCGA-EW-A6SA TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF 
       16.77        33.21         7.40        83.34        75.02        70.85 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LD-A66U 
       85.15        86.96        69.30         2.60        11.84        21.24 
TCGA-LD-A7W5 TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FP 
        7.10        32.75        15.32        14.70        14.79        22.26 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ 
        2.63        16.08        15.68         7.46        14.50        19.53 
TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OL-A5RZ TCGA-OL-A66I TCGA-OL-A66N 
       12.36        27.91        22.39        22.32        23.47        26.04 
TCGA-OL-A66P TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LZ 
       14.07         8.91        47.01        86.96         0.16         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-W8-A86G 
       18.81        18.48        19.27        13.94        17.03        11.41 
TCGA-Z7-A8R6 
      107.05 

$`AMP PEAK 29(20Q13.2) WILD-TYPE`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SE 
       40.14        11.44        48.56        48.36         8.52        43.43 
TCGA-A1-A0SH TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04U TCGA-A2-A04V 
       47.24       143.15        18.02        78.41        87.25        63.12 
TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0D1 
      136.73       114.81        92.48        88.60       107.93        34.55 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       61.58       101.72        89.36        80.28       118.45        74.40 
TCGA-A2-A0ES TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SY 
       72.00        61.94        24.72        99.19        54.64        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
       17.52        17.13        20.52        17.46        18.90        32.55 
TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV 
       50.47        49.48        19.33        48.46        31.73        23.47 
TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C 
       22.45        19.56        16.47        52.47       107.70        17.19 
TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       18.15        10.59        39.65        29.98        32.75        56.28 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.37        50.83         7.30        21.30        23.21        26.96 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A13G TCGA-A7-A13H 
       21.90        35.31        34.29        35.47        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A3IY TCGA-A7-A3IZ 
       31.36        24.26        23.80        21.73        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A5ZW 
       10.29        11.28        13.41        11.97        13.74        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06T 
       11.05         9.37        10.42         8.75        13.02        53.06 
TCGA-A8-A06X TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J 
       31.00        43.00        19.99        18.97        14.01        12.00 
TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A084 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08O 
        9.99         7.99        15.06         0.99        28.96        31.00 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09Q TCGA-A8-A09T 
      112.08        40.01         9.99        12.00        25.02        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
       15.02         0.99        14.01        19.04        13.02        21.04 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FB 
       17.03        38.04        22.95         1.48        73.05        40.57 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2QI TCGA-AC-A3BB 
       86.66        90.71        60.92        87.12        19.33        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN 
        6.48        16.31        14.83        22.19        25.05        14.99 
TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A62X 
       19.79        15.48        23.24        24.79        29.26        13.71 
TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OR TCGA-AC-A8OS 
       18.67        12.26         8.22         0.03         1.32         2.30 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AT 
        0.33         0.62         7.36         7.46         0.33         0.33 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
        0.33         0.33         0.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A0J3 TCGA-AO-A0J4 
        5.33         5.59        68.75        58.95        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JF 
       26.04        37.48        22.36        21.53        50.86        65.10 
TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A12D 
       26.24        62.04       115.27        99.25       108.72        64.04 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KR TCGA-AQ-A04J TCGA-AQ-A1H3 
       41.62        40.57        14.73        70.39        26.93        32.52 
TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0U0 TCGA-AR-A0U3 
        2.56       140.55         5.26        84.10        65.36       134.14 
TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO 
      107.21       125.16       101.00        97.68        98.33        86.07 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24M 
       99.32        17.23        37.81        86.43        50.89       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24X 
       99.78       118.59         2.76       105.27        77.69        98.76 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ 
      166.42        20.25        86.53        63.62        38.17        40.54 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IG 
       33.30        38.96        10.59       275.87        50.70       146.50 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RI TCGA-B6-A0RM 
       18.77       127.33        84.59       129.07       234.28        78.02 
TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RV 
      263.28       102.77       140.48       100.70        89.46       157.41 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 
       97.48       188.68        18.35        21.47       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A2IU TCGA-B6-A3ZX 
      245.10        28.27        68.94        58.88       170.17        37.87 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B5 
       71.15        59.84        63.09        81.44        40.83        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BJ 
       84.13        51.68        32.02        18.21        61.51        21.70 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BW 
       61.68        72.23        74.14        76.60        53.95        77.95 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       89.06        90.97        77.98        38.01        29.98        13.91 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       17.26        15.65         2.56        38.47        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EB 
       16.27        15.68         9.63        44.81        32.58        24.49 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HA 
       10.78        15.16        37.78        53.26        24.56        52.96 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HW TCGA-BH-A0W3 TCGA-BH-A0W4 
        5.85         2.50        13.61        51.32        23.93        24.95 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M 
       23.05        32.91         4.90        35.93        20.12        72.56 
TCGA-BH-A18P TCGA-BH-A18S TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EY TCGA-BH-A1F0 
       30.28        66.05       113.82        82.85        17.69        25.81 
TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FG TCGA-BH-A1FH 
       89.16       120.62       114.15        33.17       122.89        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A203 
       63.35        55.00       144.59        72.07        28.14        38.60 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
      130.16        10.65        20.12        10.52       109.28        20.88 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12V 
        9.70        18.87        21.76         9.44        11.77        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF 
       12.66        12.56        12.92         4.11        12.33        10.92 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
        0.16        12.03        10.42        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A275 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-C8-A9FZ 
       12.36         0.03        14.43        33.99        12.49        19.46 
TCGA-D8-A141 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JM 
       20.58        17.49        16.50        20.09        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       20.38        12.20        14.70        17.79        16.73        25.74 
TCGA-D8-A1XC TCGA-D8-A1XG TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XT 
       12.39        14.73        17.69        55.30        15.85        16.64 
TCGA-D8-A1XV TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
       15.16        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27K TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V 
       48.03        13.48         4.80         1.61        13.08        12.53 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A108 
       33.37        18.51        21.67        12.66        34.42        27.52 
TCGA-E2-A10A TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14U 
       40.41        28.44        28.87        47.15        38.24        43.33 
TCGA-E2-A14W TCGA-E2-A14Z TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15D 
       32.02        18.51        21.04        23.87        14.79        17.29 
TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15L TCGA-E2-A15P TCGA-E2-A15T 
       18.21        55.63        53.92        20.58        19.56        51.39 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IF 
       87.22        33.01        32.35        28.50        16.47        37.41 
TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IU TCGA-E2-A1L6 
       70.36        28.44        59.18         3.88        11.08        54.18 
TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A2P5 
       73.64        24.59        75.81        28.90        50.07        26.99 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1NC TCGA-E9-A1ND 
       34.55        43.56        34.82        32.88        39.55        41.62 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1R0 TCGA-E9-A1RD TCGA-E9-A1RI TCGA-E9-A227 
       25.84        18.94        28.27         1.12        47.64        32.05 
TCGA-E9-A228 TCGA-E9-A22A TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A24A 
       42.25        39.09        40.73        40.50        20.12        24.56 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 
       25.81        27.85        12.20        39.72        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P1 TCGA-EW-A1P3 
       13.25        25.94        22.82        29.95        39.78        52.96 
TCGA-EW-A1P4 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
       29.82        30.08         7.86        13.94        10.52        34.55 
TCGA-EW-A3E8 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GI-A2C9 
       34.03        23.51        15.22        24.99        31.30       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DH TCGA-GM-A2DL TCGA-GM-A2DM 
       59.57       216.76        79.10        72.10       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN 
      101.62        85.35       110.50        38.20        43.73        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A74U 
       72.03        13.55        18.12        62.47        11.57        13.22 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       13.28        10.62        24.95        29.23        25.05        17.06 
TCGA-LL-A5YO TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        19.59        17.49         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       31.99        58.62        40.08        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       24.72        20.38        26.70        65.62        41.92        42.77 
TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-PE-A5DD TCGA-PL-A8LY 
       17.36        28.21        19.73        40.11        64.21         0.26 
TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
       21.07        20.68        13.84        18.87        17.39        17.26 
TCGA-UU-A93S TCGA-V7-A7HQ TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
        3.81        66.84        52.96        29.03        15.35        16.04 
TCGA-Z7-A8R5 
      108.07 

  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                        282.90                         275.87 
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                         27.02                          28.27 
[1] "0.2 - 282.9 (27.0)" "0.0 - 275.9 (28.3)"
[1] "hr=" "1.1"
D29V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AMP PEAK 29(20Q13.2) MUTATED        39       36        3        2       185
  AMP PEAK 29(20Q13.2) WILD-TYPE      50       49        3        4       168
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 29(20Q13.2) MUTATED         132         1         90         15
  AMP PEAK 29(20Q13.2) WILD-TYPE       120         1         64         14
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  AMP PEAK 29(20Q13.2) MUTATED           26       11         1       4
  AMP PEAK 29(20Q13.2) WILD-TYPE         39        9         0       9
D29V3, multiclass
            clus
vv           AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  STAGE I                              39                             50
  STAGE IA                             36                             49
  STAGE IB                              3                              3
  STAGE II                              2                              4
  STAGE IIA                           185                            168
  STAGE IIB                           132                            120
  STAGE III                             1                              1
  STAGE IIIA                           90                             64
  STAGE IIIB                           15                             14
  STAGE IIIC                           26                             39
  STAGE IV                             11                              9
  STAGE TIS                             1                              0
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 29(20Q13.2) MUTATED   120 346  57  22
  AMP PEAK 29(20Q13.2) WILD-TYPE 156 278  79  18
D29V4, multiclass
    clus
vv   AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  T1                          120                            156
  T2                          346                            278
  T3                           57                             79
  T4                           22                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  AMP PEAK 29(20Q13.2) MUTATED   248 179  79  31
  AMP PEAK 29(20Q13.2) WILD-TYPE 259 179  40  46
D29V5, multiclass
    clus
vv   AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  N0                          248                            259
  N1                          179                            179
  N2                           79                             40
  N3                           31                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V6, binary
                                cls
clus                               0   1
  AMP PEAK 29(20Q13.2) MUTATED   464  12
  AMP PEAK 29(20Q13.2) WILD-TYPE 425  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(20Q13.2) MUTATED    464   12
  AMP PEAK 29(20Q13.2) WILD-TYPE  425   10
   clus
vv  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  0                          464                            425
  1                           12                             10
[1] 2 2
[1] FALSE
D29V7, binary
                                cls
clus                               0   1
  AMP PEAK 29(20Q13.2) MUTATED   538  10
  AMP PEAK 29(20Q13.2) WILD-TYPE 530   2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(20Q13.2) MUTATED    538   10
  AMP PEAK 29(20Q13.2) WILD-TYPE  530    2
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  FEMALE                          538                            530
  MALE                             10                              2
[1] 2 2
[1] FALSE
D29V8, binary
                                cls
clus                               0   1
  AMP PEAK 29(20Q13.2) MUTATED   206 272
  AMP PEAK 29(20Q13.2) WILD-TYPE 223 246
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(20Q13.2) MUTATED    206  272
  AMP PEAK 29(20Q13.2) WILD-TYPE  223  246
     clus
vv    AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  NO                           206                            223
  YES                          272                            246
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  AMP PEAK 29(20Q13.2) MUTATED                            1
  AMP PEAK 29(20Q13.2) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  AMP PEAK 29(20Q13.2) MUTATED                             452
  AMP PEAK 29(20Q13.2) WILD-TYPE                           318
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  AMP PEAK 29(20Q13.2) MUTATED                               55
  AMP PEAK 29(20Q13.2) WILD-TYPE                            145
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  AMP PEAK 29(20Q13.2) MUTATED                     1                     7
  AMP PEAK 29(20Q13.2) WILD-TYPE                   5                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  AMP PEAK 29(20Q13.2) MUTATED                                 11
  AMP PEAK 29(20Q13.2) WILD-TYPE                               18
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  AMP PEAK 29(20Q13.2) MUTATED                    1             20
  AMP PEAK 29(20Q13.2) WILD-TYPE                 16             27
D29V9, multiclass
                                  clus
vv                                 AMP PEAK 29(20Q13.2) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             452
  INFILTRATING LOBULAR CARCINOMA                             55
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       7
  MIXED HISTOLOGY (PLEASE SPECIFY)                           11
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                             20
                                  clus
vv                                 AMP PEAK 29(20Q13.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               318
  INFILTRATING LOBULAR CARCINOMA                              145
  MEDULLARY CARCINOMA                                           5
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             18
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               27
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 29(20Q13.2) MUTATED                                  0    32
  AMP PEAK 29(20Q13.2) WILD-TYPE                                1    28
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 29(20Q13.2) MUTATED                         100   361
  AMP PEAK 29(20Q13.2) WILD-TYPE                        81   384
D29V11, multiclass
                                  clus
vv                                 AMP PEAK 29(20Q13.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      32
  BLACK OR AFRICAN AMERICAN                                 100
  WHITE                                                     361
                                  clus
vv                                 AMP PEAK 29(20Q13.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        28
  BLACK OR AFRICAN AMERICAN                                    81
  WHITE                                                       384
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V12, binary
                                cls
clus                               0   1
  AMP PEAK 29(20Q13.2) MUTATED    17 443
  AMP PEAK 29(20Q13.2) WILD-TYPE  22 432
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(20Q13.2) MUTATED     17  443
  AMP PEAK 29(20Q13.2) WILD-TYPE   22  432
                        clus
vv                       AMP PEAK 29(20Q13.2) MUTATED
  HISPANIC OR LATINO                               17
  NOT HISPANIC OR LATINO                          443
                        clus
vv                       AMP PEAK 29(20Q13.2) WILD-TYPE
  HISPANIC OR LATINO                                 22
  NOT HISPANIC OR LATINO                            432
[1] 2 2
[1] FALSE

Clustering(30) Variable = DEL PEAK  1(1P36.13) MUTATION ANALYSIS
D30V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  1(1P36.13) MUTATED   380  68
  DEL PEAK  1(1P36.13) WILD-TYPE 537  79
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           448                            616 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                            68                             79 
$`DEL PEAK  1(1P36.13) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SH TCGA-A1-A0SM 
      131.67        42.81         9.96        14.37        47.24         7.96 
TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04R TCGA-A2-A04W TCGA-A2-A04X 
       39.32        28.01        18.02       121.94       101.98        55.43 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D4 
       77.19        75.25       107.93        56.81        67.33        25.22 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0SV TCGA-A2-A0T0 
       89.36        80.28        35.05        63.29        27.12        17.52 
TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       20.52        20.75        18.21        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A25B 
       49.48        18.61        17.36        60.72        19.20        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XZ 
       17.19        18.15        36.23        33.93        29.98        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0DA TCGA-A7-A0DC 
       50.83         7.30        21.90        38.30        35.67        29.79 
TCGA-A7-A13F TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A2KD TCGA-A7-A4SA TCGA-A7-A4SE 
       25.15        31.36        24.26        22.32        14.93        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       17.92        14.73        12.10         9.37        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A075 
       13.02        17.98        53.06        29.03        26.01        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07L 
       53.98         9.01        43.00        18.97        18.97        32.05 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A084 TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08J 
       10.98         8.98        15.06        38.01        33.01        37.05 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 
       31.00        31.00         0.99        33.01        43.00        30.97 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D 
       12.00         9.99         9.99        12.00         1.02        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R 
       49.05        45.07        33.07         1.02        25.02         8.98 
TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E 
        0.99        19.04        21.04        27.02        17.03        22.95 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FE TCGA-AC-A2FM TCGA-AC-A3BB TCGA-AC-A3EH 
       73.05        99.35        86.66        26.04        32.45         6.48 
TCGA-AC-A3OD TCGA-AC-A3QQ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5XS TCGA-AC-A5XU 
       14.83        24.13        29.26        16.80        19.33        14.96 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A8OP 
       11.44        13.71        18.67        13.58        12.26        20.19 
TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
        1.12         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        2.96         1.78         1.71         9.96         7.36         7.46 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         0.33         6.44         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0XP TCGA-AN-A0XS 
        7.17         7.04         0.33         0.36         0.30         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A0J3 
        0.33         0.33        80.28        66.77        95.70        21.40 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JD 
       26.04        37.48        20.32        53.03        21.53        72.00 
TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        26.24        50.24        55.33        71.80       115.27 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12F TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS 
      108.03        90.58        48.36        82.62        61.87         0.53 
TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AR-A0TQ 
       17.79        26.93         5.65        15.62        32.91        98.33 
TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 
      109.02        98.93        55.86       107.24       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AP TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24H 
      134.14       125.16        93.90        86.53        33.73       160.90 
TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A250 
       94.22       104.28       112.77        97.84       105.27        89.00 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LK TCGA-AR-A2LL 
       93.30        85.64        71.05        93.83        54.21        66.15 
TCGA-AR-A2LO TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I1 TCGA-B6-A0I9 TCGA-B6-A0IB 
       39.39        33.30        38.96        77.62        12.13       129.57 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
      146.50       112.37       165.76       140.88       255.68        68.45 
TCGA-B6-A0RL TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WW 
       81.17       102.77       100.70       282.90        79.63        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       21.47       113.79        43.59       101.52        73.51       139.17 
TCGA-B6-A400 TCGA-B6-A409 TCGA-B6-A40B TCGA-BH-A0AV TCGA-BH-A0B2 TCGA-BH-A0B3 
        7.07        18.84       103.63        59.84        40.83        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BF TCGA-BH-A0BP 
       39.16        70.22        51.68        37.22        43.53        75.48 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DD 
       45.57        49.94        41.75        44.02        90.97        45.83 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0E2 TCGA-BH-A0E6 
       77.98        23.44        38.01        13.91        14.30         9.63 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H7 TCGA-BH-A0H9 
       46.19        24.49        30.35        10.78        23.08        41.00 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0W3 TCGA-BH-A18F TCGA-BH-A18J TCGA-BH-A18K 
       12.89        51.32        23.93        32.91        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18U 
       26.66        30.28        55.63        37.55         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1F2 TCGA-BH-A1F8 
       51.16        67.50        42.28        12.00        31.53        24.62 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FM TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A42T 
       33.17        74.73        45.63        83.31       130.16        10.52 
TCGA-BH-A5J0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12W 
       23.51         9.44        11.93        12.66        11.77        12.66 
TCGA-C8-A12Z TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HJ 
       12.56        12.59        12.92         4.08        12.33         0.16 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A274 
       12.03        10.42        12.33        12.53        12.36         9.53 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-D8-A13Y 
        9.50        24.56        14.43        33.99        12.49        56.81 
TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       13.97        21.14        14.17        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JM 
       18.15        18.90        12.03        18.97        20.09        19.40 
TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1X8 TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       21.01        18.58        25.74        15.22        14.73        21.80 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       14.50        19.92        55.30        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y1 
       16.64        12.99        15.16        16.54        15.32         9.93 
TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27T TCGA-D8-A27W TCGA-D8-A73U TCGA-D8-A73W 
       14.14        16.04        13.08        12.26        16.18        12.66 
TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A14N 
       34.42        46.59        40.41        40.11        28.44        47.15 
TCGA-E2-A14O TCGA-E2-A14V TCGA-E2-A14Z TCGA-E2-A154 TCGA-E2-A158 TCGA-E2-A15A 
       44.68        34.26        18.51        19.43        14.79        23.34 
TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1IH 
       21.63        12.92        50.79        56.94        14.07        33.73 
TCGA-E2-A1II TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A2P5 
       33.70        60.36        73.64        24.59        50.07        26.99 
TCGA-E2-A2P6 TCGA-E2-A576 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       34.55        34.29        22.29        36.56        39.55        41.62 
TCGA-E9-A1NF TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R3 TCGA-E9-A1R5 
       35.24        18.94         9.86        24.82         2.56         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       48.23        40.24        46.65         6.58        21.27        46.59 
TCGA-E9-A226 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A243 TCGA-E9-A244 
       34.45        42.25        37.74        39.09        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3X8 
       38.99         7.13        12.33        29.72        38.07        30.44 
TCGA-E9-A54Y TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1OV 
       23.84        26.40        12.20        18.90        28.77        25.94 
TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P8 
       22.82        29.85        40.41        52.96        23.11         7.86 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        13.94        10.52        14.43        19.96        55.00 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SA 
       25.91        22.09        17.49        10.16        23.51        16.77 
TCGA-EW-A6SB TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GM-A3NW TCGA-GM-A3XL TCGA-GM-A4E0 
       24.99        33.21         7.40       110.50        69.30        72.03 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FP 
       11.57        32.75        17.06        15.32        14.79        22.26 
TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5S0 
       12.36        19.59        17.49        27.91         2.10        20.38 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66N TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD 
       65.62        41.92        26.04         8.91        47.01        64.21 
TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA17 TCGA-UU-A93S 
        0.16        18.81        18.48        21.07        13.94         3.81 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R5 
       52.96        29.03        16.04       108.07 

$`DEL PEAK  1(1P36.13) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
      129.14        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       43.43        48.10        14.27        20.88        13.68        31.79 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04U 
       19.20        18.21       143.15        78.41        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
       63.12        36.13       136.73        99.12        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0D1 
       92.48        88.60       107.93         5.19        98.99        34.55 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
       33.76        61.58       101.72       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST 
       72.00        34.29        31.82        61.94        24.72        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 
       54.64        44.88        50.43        44.28        17.13         8.38 
TCGA-A2-A0T3 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YK 
       49.84        17.46        18.90        32.55        25.28        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 
       48.46        31.73        23.77        23.47        22.45        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25E TCGA-A2-A25F 
       19.56        16.47        52.47       107.70       105.34        10.59 
TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       39.65        91.07        32.75        56.28        47.31        35.93 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CE 
       24.39        21.30        23.21        26.96        21.14        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13D 
       34.29        35.47        30.61        37.45        33.11        31.73 
TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       20.19        23.61        29.56        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        11.34        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A5ZW TCGA-A7-A5ZX 
       14.70        11.97        13.74        14.50        10.72        11.05 
TCGA-A7-A6VV TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A07E 
       10.29        13.02         1.02        31.00         1.02        19.99 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
       14.01        12.00         9.99         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G 
       45.07        36.95        13.02         0.99        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 
       12.00         9.99       112.08        40.01        33.01        17.95 
TCGA-A8-A095 TCGA-A8-A09K TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 
       41.98        29.98        19.04        15.02        14.01        12.00 
TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H 
       13.02         0.99        38.04         0.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO 
        1.48        40.57        90.71        60.92        87.12        74.14 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3TM 
       33.04        19.33        14.66        16.31        22.19        25.05 
TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       14.99        16.57        19.79        15.48        23.24        24.79 
TCGA-AC-A5EI TCGA-AC-A62Y TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OR 
       14.53        17.42         1.68         8.22         0.03         1.32 
TCGA-AC-A8OS TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FS TCGA-AN-A0FX 
        2.30         0.16         0.33         5.65         6.90         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XR 
        0.33         0.33         5.36         0.33        12.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T 
        5.33         5.59        61.35        81.63        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J8 TCGA-AO-A0JB 
       58.95        29.13        32.78        52.18        22.36        50.70 
TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       50.86        65.10        62.04        99.25       108.72       106.78 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        64.04        57.30        41.62        40.57        14.73 
TCGA-AO-A1KR TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 
       70.39        24.79       130.09        32.52         2.56        19.20 
TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0U0 
      140.55         5.26        84.10        75.22        64.83        65.36 
TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      107.21       108.36       101.00       103.86        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU 
       96.00        86.07        99.32        17.23        37.81        94.29 
TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       61.28        86.43        50.89       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
        2.76        77.69       105.30        32.58        98.76        98.66 
TCGA-AR-A251 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN 
       99.62       166.42        20.25        86.53        63.62        38.17 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QQ TCGA-B6-A0I2 TCGA-B6-A0I5 
       40.54        57.27        73.35        10.59       143.38       281.29 
TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
      275.87        50.70        65.72       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN 
       84.59       129.07       212.25       234.28        78.02       263.28 
TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      162.05       140.48        89.46       157.41        97.48       188.68 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.88 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40C 
      170.17        37.87        85.35        70.16        68.12        71.15 
TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B6 
       62.93        20.45        25.55        63.09        81.44        81.63 
TCGA-BH-A0B7 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       84.13        32.02        18.21        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BW 
       61.68        72.23        74.14        76.60        53.95        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP 
       49.05        89.06        29.98        78.28        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        38.47        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI 
        4.41        15.68        44.81        32.58        31.00        24.43 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HA TCGA-BH-A0HB 
       15.16        37.78        53.26        24.56        52.96        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HX 
       20.38         5.85         2.50        13.61        36.85        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
       50.79         5.59        24.95        42.35        44.81        23.05 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18S TCGA-BH-A1EO 
        4.90        35.93        72.56        37.74        66.05        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
      113.82        82.85        55.69        49.58        17.69        25.81 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FG TCGA-BH-A1FH 
       89.16        97.48       120.62       114.15       122.89        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       63.35        55.00        72.07       144.59        72.07        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       26.14        38.60        57.83        10.65         6.44        20.12 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
      109.28        20.88        18.64         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12Q TCGA-C8-A12U 
       18.87        21.76        11.77        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        12.66        48.53         3.16        13.51         1.87 
TCGA-C8-A137 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HN TCGA-C8-A1HO 
        4.11        10.92        11.34        11.28        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A3M8 
       20.25        12.95         8.28         9.67         0.03        12.95 
TCGA-C8-A8HP TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 
       13.02        13.41        19.46        20.88        13.25        20.58 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JG TCGA-D8-A1JH 
       14.17        13.48        19.20        17.49        53.00        14.01 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.12        20.09        20.38        12.20        13.32        14.70 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       17.79        16.73        23.90        27.58        18.15        12.39 
TCGA-D8-A1XD TCGA-D8-A1XM TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27E 
       17.16        17.69        43.04        15.52        14.24        17.42 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 
        4.80         1.61        10.09        12.53        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10F 
       21.67        25.22        43.00        27.52        37.51        28.87 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       40.96        38.24        38.60        33.17        75.98        43.33 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       32.02        31.96        69.34        63.62        69.96        23.24 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       21.04        23.87        25.05        22.82        17.29        20.71 
TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       18.21        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15P TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       19.56        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       32.35        28.50        16.47        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       70.36        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH 
       11.08        54.18        19.66        75.81        28.90       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
      102.61         8.75        43.04        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       34.92        38.76        17.69        34.82        32.88        36.82 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1R0 TCGA-E9-A1R2 
       34.16        36.20        35.77        25.84        28.27        34.95 
TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A1RI 
        6.12        11.15        45.01        32.09         1.12        47.64 
TCGA-E9-A227 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       32.05        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X 
        1.94        24.56         9.47        32.91        30.18        23.90 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IX TCGA-EW-A1IY 
       26.70         0.79        25.81        27.85        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1P0 
       18.21        13.25        16.57        15.68        29.95        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB 
       39.78        29.82        18.48        30.08        18.90        19.99 
TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A3E8 TCGA-EW-A6S9 TCGA-EW-A6SC TCGA-GI-A2C9 
       34.55        52.73        34.03        15.22        31.30       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF 
       59.57       216.76        79.10        83.34        75.02        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A5PV TCGA-GM-A5PX 
       85.35        38.20        43.73        66.38        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
        2.60        62.47        11.84        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YN 
       13.28        10.62        24.95        29.23        25.05        14.70 
TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       14.47         2.63        16.08        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       19.53        22.39        36.30        58.52        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       40.08        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO 
       26.70        23.47        42.77        17.36        14.07        28.21 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA0Z 
       19.73        40.11        86.96         0.26         9.93        20.68 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UL-AAZ6 
       19.27        13.84        18.87        17.39        17.26        17.03 
TCGA-V7-A7HQ TCGA-W8-A86G TCGA-XX-A899 TCGA-Z7-A8R6 
       66.84        11.41        15.35       107.05 

  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                        282.90                         281.29 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                        25.005                         30.030 
[1] "0.2 - 282.9 (25.0)" "0.0 - 281.3 (30.0)"
[1] "hr=" "1.5"
D30V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  1(1P36.13) MUTATED        28       24        0        3       136
  DEL PEAK  1(1P36.13) WILD-TYPE      61       61        6        3       217
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  1(1P36.13) MUTATED         117         1         74         18
  DEL PEAK  1(1P36.13) WILD-TYPE       135         1         80         11
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  1(1P36.13) MUTATED           33       12         0       5
  DEL PEAK  1(1P36.13) WILD-TYPE         32        8         1       8
D30V3, multiclass
            clus
vv           DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  STAGE I                              28                             61
  STAGE IA                             24                             61
  STAGE IB                              0                              6
  STAGE II                              3                              3
  STAGE IIA                           136                            217
  STAGE IIB                           117                            135
  STAGE III                             1                              1
  STAGE IIIA                           74                             80
  STAGE IIIB                           18                             11
  STAGE IIIC                           33                             32
  STAGE IV                             12                              8
  STAGE TIS                             0                              1
  STAGE X                               5                              8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK  1(1P36.13) MUTATED    83 287  55  26
  DEL PEAK  1(1P36.13) WILD-TYPE 193 337  81  14
D30V4, multiclass
    clus
vv   DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  T1                           83                            193
  T2                          287                            337
  T3                           55                             81
  T4                           26                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK  1(1P36.13) MUTATED   180 166  57  41
  DEL PEAK  1(1P36.13) WILD-TYPE 327 192  62  36
D30V5, multiclass
    clus
vv   DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  N0                          180                            327
  N1                          166                            192
  N2                           57                             62
  N3                           41                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V6, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.13) MUTATED   372  13
  DEL PEAK  1(1P36.13) WILD-TYPE 517   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.13) MUTATED    372   13
  DEL PEAK  1(1P36.13) WILD-TYPE  517    9
   clus
vv  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  0                          372                            517
  1                           13                              9
[1] 2 2
[1] FALSE
D30V7, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.13) MUTATED   443   9
  DEL PEAK  1(1P36.13) WILD-TYPE 625   3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.13) MUTATED    443    9
  DEL PEAK  1(1P36.13) WILD-TYPE  625    3
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  FEMALE                          443                            625
  MALE                              9                              3
[1] 2 2
[1] FALSE
D30V8, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.13) MUTATED   170 228
  DEL PEAK  1(1P36.13) WILD-TYPE 259 290
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.13) MUTATED    170  228
  DEL PEAK  1(1P36.13) WILD-TYPE  259  290
     clus
vv    DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  NO                           170                            259
  YES                          228                            290
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK  1(1P36.13) MUTATED                            1
  DEL PEAK  1(1P36.13) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  1(1P36.13) MUTATED                             347
  DEL PEAK  1(1P36.13) WILD-TYPE                           423
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  1(1P36.13) MUTATED                               74
  DEL PEAK  1(1P36.13) WILD-TYPE                            126
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  1(1P36.13) MUTATED                     1                     0
  DEL PEAK  1(1P36.13) WILD-TYPE                   5                     9
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  1(1P36.13) MUTATED                                  8
  DEL PEAK  1(1P36.13) WILD-TYPE                               21
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  1(1P36.13) MUTATED                    4             17
  DEL PEAK  1(1P36.13) WILD-TYPE                 13             30
D30V9, multiclass
                                  clus
vv                                 DEL PEAK  1(1P36.13) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             347
  INFILTRATING LOBULAR CARCINOMA                             74
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       0
  MIXED HISTOLOGY (PLEASE SPECIFY)                            8
  MUCINOUS CARCINOMA                                          4
  OTHER  SPECIFY                                             17
                                  clus
vv                                 DEL PEAK  1(1P36.13) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               423
  INFILTRATING LOBULAR CARCINOMA                              126
  MEDULLARY CARCINOMA                                           5
  METAPLASTIC CARCINOMA                                         9
  MIXED HISTOLOGY (PLEASE SPECIFY)                             21
  MUCINOUS CARCINOMA                                           13
  OTHER  SPECIFY                                               30
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  1(1P36.13) MUTATED                                  0    25
  DEL PEAK  1(1P36.13) WILD-TYPE                                1    35
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  1(1P36.13) MUTATED                          79   299
  DEL PEAK  1(1P36.13) WILD-TYPE                       102   446
D30V11, multiclass
                                  clus
vv                                 DEL PEAK  1(1P36.13) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      25
  BLACK OR AFRICAN AMERICAN                                  79
  WHITE                                                     299
                                  clus
vv                                 DEL PEAK  1(1P36.13) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        35
  BLACK OR AFRICAN AMERICAN                                   102
  WHITE                                                       446
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V12, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.13) MUTATED    17 359
  DEL PEAK  1(1P36.13) WILD-TYPE  22 516
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.13) MUTATED     17  359
  DEL PEAK  1(1P36.13) WILD-TYPE   22  516
                        clus
vv                       DEL PEAK  1(1P36.13) MUTATED
  HISPANIC OR LATINO                               17
  NOT HISPANIC OR LATINO                          359
                        clus
vv                       DEL PEAK  1(1P36.13) WILD-TYPE
  HISPANIC OR LATINO                                 22
  NOT HISPANIC OR LATINO                            516
[1] 2 2
[1] FALSE

Clustering(31) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
D31V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  2(1P22.1) MUTATED   295  62
  DEL PEAK  2(1P22.1) WILD-TYPE 622  85
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          357                           707 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           62                            85 
$`DEL PEAK  2(1P22.1) MUTATED`
TCGA-3C-AALI TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SF TCGA-A1-A0SK TCGA-A1-A0SN 
      131.67         9.96        14.37        48.10        31.79        39.32 
TCGA-A1-A0SO TCGA-A2-A04R TCGA-A2-A04Y TCGA-A2-A0CO TCGA-A2-A0CS TCGA-A2-A0CT 
       28.01       121.94        36.13       114.81        77.19        75.25 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D4 TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EQ 
      107.93        56.81        25.22        89.36        80.28        79.76 
TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0T4 TCGA-A2-A0YE 
       35.05        63.29        27.12        17.52        20.52        18.21 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A25C 
       21.90        21.67        18.61        23.77        17.36        17.19 
TCGA-A2-A3KC TCGA-A2-A3XU TCGA-A2-A3XZ TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CJ 
       36.23        29.98        50.37        21.14        21.90        30.61 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A26E TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A4SA 
       29.79        20.19        31.36        22.32        11.28        14.93 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06T TCGA-A8-A06U 
       17.92        14.73         8.75        13.02        53.06        29.03 
TCGA-A8-A06Y TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07L 
       26.01        43.00        18.97        18.97        14.01        32.05 
TCGA-A8-A07R TCGA-A8-A084 TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I 
        8.98        15.06        38.01        33.01        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X 
       37.05         9.99        31.00         0.99        33.01        43.00 
TCGA-A8-A092 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D 
       30.97         9.99         9.99        12.00         1.02        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09X TCGA-A8-A0A1 
       49.05        45.07         1.02         8.98        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E 
       19.04        13.02        21.04        27.02        17.03        22.95 
TCGA-AC-A2BM TCGA-AC-A2FE TCGA-AC-A2FM TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3OD 
       99.35        86.66        26.04        32.45         6.48        14.83 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A8OP TCGA-AN-A03X TCGA-AN-A03Y 
       16.80        14.96        11.44        20.19         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.23         0.33         2.96         1.78         9.96         7.36 
TCGA-AN-A0AM TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FT 
        0.16         0.33         6.44         7.00         7.17         7.04 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03L 
       12.33         0.30         0.33         0.33         5.59        80.28 
TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0JA 
       66.77        95.70        21.40        26.04        20.32        21.53 
TCGA-AO-A0JD TCGA-AO-A0JI TCGA-AO-A124 TCGA-AO-A12A TCGA-AO-A12F TCGA-AO-A1KP 
       72.00        50.24       115.27        90.58        48.36        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A7U7 
       61.87        70.39         0.53        24.79         5.65        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0U2 TCGA-AR-A1AP 
      140.55        98.33       109.02        98.93        83.87        93.90 
TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24W 
       94.29        86.53       112.77        97.84       105.27        32.58 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LK 
       98.66        89.00        93.30        85.64        71.05        54.21 
TCGA-AR-A2LL TCGA-AR-A2LO TCGA-AR-A5QN TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IG 
       66.15        39.39        33.30        12.13       129.57       146.50 
TCGA-B6-A0IH TCGA-B6-A0IO TCGA-B6-A0RL TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RS 
      112.37       165.76        81.17       162.05       102.77       100.70 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI 
       79.63        18.35       113.79        58.88       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A402 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AZ TCGA-BH-A0B2 
      139.17        70.16       103.63        62.93        63.09        40.83 
TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BF 
       70.22        81.63        84.13        37.22        18.21        43.53 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BV TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 
       21.70        74.89        49.94        41.75        44.02        90.97 
TCGA-BH-A0DD TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E2 TCGA-BH-A0E9 TCGA-BH-A0EB 
       45.83        70.88        16.27        14.30        46.19        24.49 
TCGA-BH-A0GZ TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0W3 
       10.78        23.08        41.00        12.89        51.32        23.93 
TCGA-BH-A0W4 TCGA-BH-A18F TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18P 
       24.95        32.91        20.12        90.84        26.66        30.28 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EU TCGA-BH-A1EV 
        7.36        51.39        51.16        67.50        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FE TCGA-BH-A1FL 
       55.69        17.69        97.48        24.62        74.73        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A203 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 
       45.63        72.07        38.60        10.52        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A135 
       11.93        12.66        12.66        12.56        13.51        12.92 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A274 TCGA-C8-A27A 
       12.03        10.42        12.36         8.28         9.53        24.56 
TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A146 
       33.99        12.49        19.46        20.88        13.97        21.14 
TCGA-D8-A1J8 TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JI TCGA-D8-A1JJ 
       14.17        15.78        18.90        12.03        18.97        20.09 
TCGA-D8-A1JP TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XM TCGA-D8-A1XQ TCGA-D8-A1XR 
       21.01        15.22        14.73        17.69        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-D8-A1Y3 
       16.31        12.99        15.16        16.54         9.93        14.14 
TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27M TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27W 
       13.45        14.43        13.48        10.09        13.08        12.26 
TCGA-D8-A73U TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A10E 
       16.18        12.66        34.42        46.59        40.11        28.44 
TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14Y TCGA-E2-A152 
       44.68        38.24        75.98        34.26        69.34        69.96 
TCGA-E2-A154 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15P TCGA-E2-A15S TCGA-E2-A1AZ 
       19.43        23.34        20.71        19.56        14.07        76.57 
TCGA-E2-A1IH TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A1LL TCGA-E2-A2P5 
       33.73        73.64        24.59        50.07        43.04        26.99 
TCGA-E2-A56Z TCGA-E2-A576 TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA 
        8.28        34.29        32.88        22.29        36.20        36.56 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       18.94         9.86        34.95         2.56         6.12         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RG TCGA-E9-A226 TCGA-E9-A22A 
       48.23        32.09        40.24        21.27        34.45        39.09 
TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A249 
       38.37        41.72        40.73         0.69        38.99         7.13 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FK 
       12.33        29.72        38.07        30.44        23.84        26.70 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 
       26.40        12.20        28.77        29.85        40.41        52.96 
TCGA-EW-A1P5 TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PH TCGA-EW-A2FR 
       23.11         6.15        13.94        10.52        19.96        55.00 
TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A6SA TCGA-GI-A2C8 TCGA-GM-A3NW TCGA-GM-A3NY 
       25.91        17.49        16.77         7.40       110.50        38.20 
TCGA-JL-A3YX TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A8F5 
       11.57        17.06        15.32        14.79        22.26        19.59 
TCGA-LL-A9Q3 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A66K TCGA-OL-A66N TCGA-PE-A5DD 
       17.49        58.52        36.36        41.92        26.04        64.21 
TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-UL-AAZ6 TCGA-WT-AB41 
        0.16        18.81        18.48        21.07        17.03        52.96 
TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R5 
       29.03        16.04       108.07 

$`DEL PEAK  2(1P22.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14        42.81        40.14        11.44        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
        8.52        43.43        14.27        47.24        20.88        13.68 
TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        19.20        18.21       143.15        18.02        78.41 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
       73.84        87.25        63.12       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CU 
       99.12        24.79        92.48        88.60       107.93         5.19 
TCGA-A2-A0CV TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM 
       98.99        67.33        34.55        33.76        61.58       101.72 
TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
      118.45        74.40        72.00        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       24.72        99.19        54.64        44.88        50.43        44.28 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
       17.13         8.38        49.84        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL 
       32.55        25.28        50.47        49.48        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       31.73        23.47        60.72        22.45        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25D 
       19.56        16.47        52.47       107.70        42.44        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XV 
      105.34        10.59        39.65        33.93        91.07        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       56.28        47.31        35.93        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG 
       21.30        23.21        26.96        38.30        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13F 
       35.47        37.45        35.67        33.11        31.73        25.15 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       23.61        29.56        24.26        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A5ZV TCGA-A7-A5ZW 
       11.97        13.74        14.50        21.17        12.10        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06P TCGA-A8-A06Q 
       11.05        10.29         9.37        10.42        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       17.98        31.00         1.02        17.03        53.98         9.01 
TCGA-A8-A07E TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U 
       19.99        12.00         9.99        10.98         7.99        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C 
        9.99        45.07        36.95        13.02         0.99        28.96 
TCGA-A8-A08O TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 
       31.00       112.08        40.01        33.01        17.95        41.98 
TCGA-A8-A097 TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V 
       12.00        29.98        33.07        25.02        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H 
        0.99         0.99        38.04         0.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
        1.48        73.05        40.57        90.71        60.92        87.12 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3HN TCGA-AC-A3QP 
       74.14        33.04        19.33        14.66        16.31        22.19 
TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 
       24.13        25.05        14.99        16.57        19.79        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X 
       23.24        24.79        29.26        14.53        19.33        13.71 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       17.42        18.67        13.58        12.26         1.68         8.22 
TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A049 TCGA-AN-A04D 
        0.03         1.12         1.32         2.30         0.62         1.71 
TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FL 
        7.46         0.33         0.33         5.65         7.96         7.59 
TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        6.90         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03M 
        5.36         0.33         0.33         0.33         5.33        61.35 
TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       81.63        68.75        47.87        58.95        29.13        32.78 
TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JC 
       52.18        37.48        22.36        53.03        50.70        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       76.77        65.10        26.24        62.04        55.33        71.80 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12B TCGA-AO-A12D 
       99.25       108.72       106.78       108.03        98.27        64.04 
TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KT TCGA-AQ-A04J 
       57.30        41.62        40.57        14.73        17.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TR 
      130.09        15.62        32.52         2.56        32.91         5.26 
TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
       84.10        75.22        64.83        55.86       107.24        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22       134.14       107.21       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ 
      103.86        97.68        98.33        96.00        86.07        99.32 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       17.23        37.81        61.28        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A256 
      104.28        77.69       105.30        98.76        99.62        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ 
      166.42        20.25        86.53        63.62        38.17        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       57.27        73.35        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IJ TCGA-B6-A0IK 
      281.29       275.87        50.70        65.72       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
      127.33        84.59       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RQ TCGA-B6-A0RT 
      212.25       234.28        78.02       263.28       140.48        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WX TCGA-B6-A0WZ 
      282.90       157.41        97.48       188.68        21.47       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A2IU 
      129.70       245.10        28.27        68.94        43.59       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40C 
       37.87         7.07        85.35        68.12        18.84        71.15 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 
       59.84        20.45        25.55        81.44        39.55        39.16 
TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BG TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       51.68        32.02        61.51        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ 
       74.14        76.60        53.95        45.57        77.95        49.05 
TCGA-BH-A0C3 TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       89.06        77.98        23.44        38.01        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       78.28        17.26        15.65         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0EA 
       67.86         4.41        15.68         9.63        44.81        32.58 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       31.00        24.43        30.35        15.16        37.78        53.26 
TCGA-BH-A0H6 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       24.56        52.96        26.50        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W5 
       13.61        36.85        27.25        50.79         5.59        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18M TCGA-BH-A18N 
       44.81        23.05         4.90        35.93        72.56        37.74 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       55.63        37.55        66.05        91.99       113.82        82.85 
TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC 
       49.58        25.81        31.53        89.16       120.62       114.15 
TCGA-BH-A1FD TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FR TCGA-BH-A1FU 
       33.17       122.89        36.92        63.35       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       28.14        26.14        83.31        57.83       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 
        6.44        20.12       109.28        20.88         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N 
        9.70        18.87        21.76         9.44        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12Y 
       12.66        11.77        12.66        12.66        12.66        48.53 
TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
        3.16         1.87        12.59         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HM TCGA-C8-A1HN 
       10.92        11.34        11.28         0.16        12.33        12.95 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A275 
       12.33        20.25        12.53        12.95         9.67         0.03 
TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HR TCGA-D8-A13Y 
        9.50        14.43        12.95        13.02        13.41        56.81 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J9 
       13.25        20.58        14.17        13.48        19.20        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JK 
       16.50        55.50        18.15        53.00        14.01        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        19.40        20.38        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA 
       18.58        17.79        16.73        25.74        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       18.15        12.39        17.16        21.80        14.50        19.92 
TCGA-D8-A1XO TCGA-D8-A1XT TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y2 
       55.30        16.64        43.04        15.32        15.52        14.24 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N 
       17.42        16.04        13.05        48.03        16.41         4.80 
TCGA-D8-A27P TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73X 
        1.61        12.53        33.37        18.51        21.67        25.22 
TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10F TCGA-E2-A14N 
       43.00        27.52        40.41        37.51        28.87        47.15 
TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X 
       40.96        38.60        33.17        43.33        32.02        31.96 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       18.51        63.62        23.24        21.04        23.87        14.79 
TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       25.05        22.82        17.29        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O 
       55.63        53.92         9.04        20.58        11.05        50.79 
TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       56.94        51.39        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        37.25        77.65        37.41        70.36 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE 
       11.08        54.18        60.36        19.66        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 
      106.75       102.61         8.75        34.55        43.56        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        17.69        34.82        36.82        34.16 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1QZ 
       39.55        41.62        35.77        35.24        25.84        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       28.27        11.15        45.01         1.12        46.65         6.58 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22D 
       46.59        47.64        32.05        42.25        37.74        41.03 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3Q9 
       40.50        20.12         1.94        24.56         9.47        32.91 
TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IX 
       30.18        23.90         0.79        25.81        27.85        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
        8.48        18.21        18.90        13.25        16.57        15.68 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       25.94        22.82        29.95        41.13        39.78        29.82 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PF 
       18.48        30.08         7.86        18.90        19.99        14.43 
TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 
       34.55        52.73        22.09        34.03        10.16        23.51 
TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C9 TCGA-GM-A2D9 
       15.22        24.99        31.30        33.21       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH 
      216.76        79.10        83.34        75.02        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       85.15        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
        2.60        62.47        11.84        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z 
       14.70        14.47         2.63        16.08        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       14.50        19.53        12.36        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       36.30        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        17.36        14.07        28.21        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA0Z 
        8.91        47.01        86.96         0.26         9.93        20.68 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       19.27        13.84        18.87        17.39        17.26        13.94 
TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-XX-A899 TCGA-Z7-A8R6 
        3.81        66.84        11.41        15.35       107.05 

  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                       165.76                        282.90 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                        25.22                         29.13 
[1] "0.2 - 165.8 (25.2)" "0.0 - 282.9 (29.1)"
[1] "hr=" "1.8"
D31V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  2(1P22.1) MUTATED        20       21        0        1       115
  DEL PEAK  2(1P22.1) WILD-TYPE      69       64        6        5       238
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  2(1P22.1) MUTATED          84         1         60         16
  DEL PEAK  2(1P22.1) WILD-TYPE       168         1         94         13
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  2(1P22.1) MUTATED           28        9         0       5
  DEL PEAK  2(1P22.1) WILD-TYPE         37       11         1       8
D31V3, multiclass
            clus
vv           DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  STAGE I                             20                            69
  STAGE IA                            21                            64
  STAGE IB                             0                             6
  STAGE II                             1                             5
  STAGE IIA                          115                           238
  STAGE IIB                           84                           168
  STAGE III                            1                             1
  STAGE IIIA                          60                            94
  STAGE IIIB                          16                            13
  STAGE IIIC                          28                            37
  STAGE IV                             9                            11
  STAGE TIS                            0                             1
  STAGE X                              5                             8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  2(1P22.1) MUTATED    67 226  45  24
  DEL PEAK  2(1P22.1) WILD-TYPE 209 398  91  16
D31V4, multiclass
    clus
vv   DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  T1                          67                           209
  T2                         226                           398
  T3                          45                            91
  T4                          24                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  2(1P22.1) MUTATED   146 127  50  32
  DEL PEAK  2(1P22.1) WILD-TYPE 361 231  69  45
D31V5, multiclass
    clus
vv   DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  N0                         146                           361
  N1                         127                           231
  N2                          50                            69
  N3                          32                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V6, binary
                               cls
clus                              0   1
  DEL PEAK  2(1P22.1) MUTATED   299   9
  DEL PEAK  2(1P22.1) WILD-TYPE 590  13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED    299    9
  DEL PEAK  2(1P22.1) WILD-TYPE  590   13
   clus
vv  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  0                         299                           590
  1                           9                            13
[1] 2 2
[1] FALSE
D31V7, binary
                               cls
clus                              0   1
  DEL PEAK  2(1P22.1) MUTATED   356   6
  DEL PEAK  2(1P22.1) WILD-TYPE 712   6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED    356    6
  DEL PEAK  2(1P22.1) WILD-TYPE  712    6
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  FEMALE                         356                           712
  MALE                             6                             6
[1] 2 2
[1] FALSE
D31V8, binary
                               cls
clus                              0   1
  DEL PEAK  2(1P22.1) MUTATED   136 180
  DEL PEAK  2(1P22.1) WILD-TYPE 293 338
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED    136  180
  DEL PEAK  2(1P22.1) WILD-TYPE  293  338
     clus
vv    DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  NO                          136                           293
  YES                         180                           338
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  2(1P22.1) MUTATED                            0
  DEL PEAK  2(1P22.1) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  2(1P22.1) MUTATED                             272
  DEL PEAK  2(1P22.1) WILD-TYPE                           498
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  2(1P22.1) MUTATED                               63
  DEL PEAK  2(1P22.1) WILD-TYPE                            137
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  2(1P22.1) MUTATED                     1                     0
  DEL PEAK  2(1P22.1) WILD-TYPE                   5                     9
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  2(1P22.1) MUTATED                                 11
  DEL PEAK  2(1P22.1) WILD-TYPE                               18
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  2(1P22.1) MUTATED                    5             10
  DEL PEAK  2(1P22.1) WILD-TYPE                 12             37
D31V9, multiclass
                                  clus
vv                                 DEL PEAK  2(1P22.1) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            272
  INFILTRATING LOBULAR CARCINOMA                            63
  MEDULLARY CARCINOMA                                        1
  METAPLASTIC CARCINOMA                                      0
  MIXED HISTOLOGY (PLEASE SPECIFY)                          11
  MUCINOUS CARCINOMA                                         5
  OTHER  SPECIFY                                            10
                                  clus
vv                                 DEL PEAK  2(1P22.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              498
  INFILTRATING LOBULAR CARCINOMA                             137
  MEDULLARY CARCINOMA                                          5
  METAPLASTIC CARCINOMA                                        9
  MIXED HISTOLOGY (PLEASE SPECIFY)                            18
  MUCINOUS CARCINOMA                                          12
  OTHER  SPECIFY                                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  2(1P22.1) MUTATED                                  0    19
  DEL PEAK  2(1P22.1) WILD-TYPE                                1    41
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  2(1P22.1) MUTATED                          52   248
  DEL PEAK  2(1P22.1) WILD-TYPE                       129   497
D31V11, multiclass
                                  clus
vv                                 DEL PEAK  2(1P22.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     19
  BLACK OR AFRICAN AMERICAN                                 52
  WHITE                                                    248
                                  clus
vv                                 DEL PEAK  2(1P22.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       41
  BLACK OR AFRICAN AMERICAN                                  129
  WHITE                                                      497
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V12, binary
                               cls
clus                              0   1
  DEL PEAK  2(1P22.1) MUTATED     8 289
  DEL PEAK  2(1P22.1) WILD-TYPE  31 586
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED      8  289
  DEL PEAK  2(1P22.1) WILD-TYPE   31  586
                        clus
vv                       DEL PEAK  2(1P22.1) MUTATED
  HISPANIC OR LATINO                               8
  NOT HISPANIC OR LATINO                         289
                        clus
vv                       DEL PEAK  2(1P22.1) WILD-TYPE
  HISPANIC OR LATINO                                31
  NOT HISPANIC OR LATINO                           586
[1] 2 2
[1] FALSE

Clustering(32) Variable = DEL PEAK  3(2Q37.3) MUTATION ANALYSIS
D32V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  3(2Q37.3) MUTATED   268  43
  DEL PEAK  3(2Q37.3) WILD-TYPE 649 104
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          311                           753 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           43                           104 
$`DEL PEAK  3(2Q37.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-A1-A0SH TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO 
      129.14        42.81        47.24        31.79        39.32        28.01 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04Y TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU 
       73.84        87.25        36.13        77.19        75.25         5.19 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ET 
       98.99       107.93        67.33        80.28        79.76        35.05 
TCGA-A2-A0EU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YT 
       34.29        27.12        44.88        21.67        18.61        23.77 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XZ 
       17.36        60.72        19.20        33.93        91.07        50.37 
TCGA-A2-A4RX TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F 
       24.39        35.31        35.67        29.79        20.19        25.15 
TCGA-A7-A26F TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A6VW 
       24.26        22.32        11.28        21.17        14.73         9.37 
TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       10.42         8.75         1.02        53.06        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07L 
       26.01         1.02         9.01        43.00        18.97        32.05 
TCGA-A8-A07P TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A08B TCGA-A8-A08I TCGA-A8-A08R 
       10.98        24.99         9.99        38.01        12.00         0.99 
TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B 
       33.01        43.00        30.97        12.00         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        1.02        49.05        45.07        33.07         1.02        25.02 
TCGA-A8-A09T TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E 
       19.04        19.04        21.04        27.02        17.03        22.95 
TCGA-AC-A2BM TCGA-AC-A2FF TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A3W5 TCGA-AC-A5EH 
       99.35        90.71        26.04        33.04        16.57        16.80 
TCGA-AC-A62V TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AN-A03Y TCGA-AN-A049 TCGA-AN-A04D 
       11.44        13.58         0.03         0.33         0.62         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FK 
        9.96         7.46         0.33         0.33         0.33         7.00 
TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FZ TCGA-AN-A0XP TCGA-AN-A0XT TCGA-AO-A03M 
        7.59         7.04         0.33         0.30         0.33        61.35 
TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J6 TCGA-AO-A0JB 
       95.70        47.87        29.13        21.40        37.48        50.70 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A12A TCGA-AO-A12F 
       72.00        76.77        50.24        55.33        90.58        48.36 
TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       61.87         0.53        17.79        26.93         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TY TCGA-AR-A0U1 
       32.91       140.55        84.10        75.22        55.86       133.22 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AS TCGA-AR-A1AY 
      134.14       107.21        98.33        96.00        37.81        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24R TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A251 
      160.90        50.89       112.77       105.30        32.58        99.62 
TCGA-AR-A2LK TCGA-B6-A0I1 TCGA-B6-A0I9 TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RL 
       54.21        77.62        12.13       255.68       212.25        81.17 
TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A1KN 
      100.70       282.90       245.10        43.59        73.51       139.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A408 TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0B2 
       37.87         7.07        68.12        59.84        20.45        40.83 
TCGA-BH-A0B3 TCGA-BH-A0BA TCGA-BH-A0BL TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0C7 
       39.55        37.22        74.89        45.57        49.94        90.97 
TCGA-BH-A0DH TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0EE 
       38.01         4.41        14.30         9.63        24.49        31.00 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0WA 
       41.00        52.96        12.89        51.32        27.25        23.05 
TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18Q TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES 
       35.93        90.84        55.63        51.16        67.50       113.82 
TCGA-BH-A1EV TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A202 
       12.00        97.48       114.15        45.63        72.07        26.14 
TCGA-BH-A5IZ TCGA-BH-A6R9 TCGA-C8-A12L TCGA-C8-A12P TCGA-C8-A12W TCGA-C8-A12X 
       18.64         5.26        11.93        11.77        12.66        12.66 
TCGA-C8-A130 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG 
        3.16        12.59         4.11         4.08        10.92        11.34 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A26W TCGA-C8-A26Z TCGA-C8-A27A 
        0.16        12.03        12.33        12.53         8.28        24.56 
TCGA-C8-A3M7 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 
       33.99        56.81        20.88        13.97        14.17        21.14 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JP TCGA-D8-A1X6 
       16.50        55.50        18.97        20.09        21.01        17.79 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XJ TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XV 
       27.58        18.15        21.80        16.41        15.85        15.16 
TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27W 
       16.54         9.93        14.14        10.09        13.08        12.26 
TCGA-E2-A109 TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14R TCGA-E2-A14X TCGA-E2-A14Y 
       46.59        47.15        44.68        38.60        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A159 TCGA-E2-A15E TCGA-E2-A15H TCGA-E2-A15S 
       18.51        69.96        25.05        20.71        12.92        14.07 
TCGA-E2-A1AZ TCGA-E2-A1BD TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1L7 
       76.57        37.25        33.73        33.70        22.19        60.36 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A573 TCGA-E9-A1N4 
      106.75       102.61         8.75        26.99        34.92        32.88 
TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF 
       22.29        36.20        36.56        39.55        41.62        35.24 
TCGA-E9-A1NI TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RE TCGA-E9-A1RI TCGA-E9-A228 
        9.86        45.01        32.09        46.65        47.64        42.25 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A249 TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A3X8 
       41.72        40.73         7.13        38.07        30.18        30.44 
TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1OW 
       23.84         0.79        26.40        18.90        28.77        22.82 
TCGA-EW-A1OY TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PF 
       29.85        23.11         7.86         6.15        10.52        14.43 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-EW-A423 
       19.96        55.00        25.91        22.09        17.49        10.16 
TCGA-EW-A6S9 TCGA-GI-A2C9 TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A4E0 
       15.22       109.87        75.02        70.85        72.10        72.03 
TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LL-A6FR TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-OL-A5D7 
        2.60        11.57        16.08        12.36        19.59        58.52 
TCGA-OL-A5D8 TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A6VO TCGA-PE-A5DC 
       31.99        22.32        20.38        23.47        28.21        47.01 
TCGA-PL-A8LX TCGA-S3-A6ZH TCGA-S3-AA14 TCGA-UL-AAZ6 TCGA-XX-A89A 
        0.16        21.07        17.39        17.03        16.04 

$`DEL PEAK  3(2Q37.3) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      131.67        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SI 
        8.52        14.37        43.43        48.10        14.27        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       13.68         7.96        19.20        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
       78.41       121.94        63.12       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
       99.12        24.79       114.81        92.48        88.60       107.93 
TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       56.81        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW 
       89.36       118.45        74.40        72.00        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0SY 
       24.72        63.29        99.19        54.64        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV 
       21.90        49.48        19.33        48.46        31.73        23.47 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       22.45        20.25        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       39.65        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
       50.83         7.30        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G 
       33.11        31.73        23.61        29.56        31.36        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       23.80        21.73        20.61        11.34        10.59        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD 
       13.41        14.70        11.97        14.93        13.74        14.50 
TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A8-A06O 
       17.92        12.10        10.72        11.05        10.29        13.02 
TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07E TCGA-A8-A07G 
       13.02        17.98        17.03        53.98        19.99        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07Z 
       14.01        12.00         9.99         8.98         7.99        45.07 
TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08F 
       15.06        36.95        13.02         0.99        28.96        33.01 
TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08T 
       19.96        37.05         9.99        31.00        31.00       112.08 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09D 
       40.01        33.01        17.95        41.98         9.99        50.04 
TCGA-A8-A09K TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
       29.98         8.98        15.02         0.99        14.01        12.00 
TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H 
       13.02         0.99        38.04         0.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FG TCGA-AC-A2FK 
        1.48        73.05        40.57        86.66        60.92        87.12 
TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       74.14        19.33        14.66        32.45         6.48        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 
       14.83        22.19        24.13        25.05        14.99        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EI TCGA-AC-A5XS 
       15.48        23.24        24.79        29.26        14.53        19.33 
TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO 
       14.96        13.71        17.42        18.67        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        8.22        20.19         1.12         1.32         2.30         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AK TCGA-AN-A0AM 
        0.23         0.33         2.96         1.78         7.36         0.16 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV 
        6.44         5.65         7.96         7.17         6.90         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.36         0.33         0.33         5.36         0.33        12.33 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J4 
       66.77        81.63        68.75        58.95        32.78        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC 
       26.04        20.32        22.36        53.03        21.53        50.86 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 
       65.10        26.24        62.04        71.80       115.27        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      108.72       106.78       108.03        98.27        64.04        57.30 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AQ-A04H 
       41.62        40.57        14.73        82.62        70.39        24.79 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR 
      130.09        15.62        32.52        19.20        98.33         5.26 
TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 
      109.02        98.93        64.83       107.24        65.36        83.87 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AO 
      125.16       108.36       101.00       103.86        97.68        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       93.90        99.32        17.23        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       86.43        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A24Z 
      104.28        97.84       105.27        77.69        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       89.00        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        66.15        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       40.54        57.27        73.35        33.30        38.96        10.59 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
      143.38       281.29       275.87       129.57        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RM 
      165.76       129.07       140.88        68.45       234.28        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV 
      263.28       162.05       102.77       140.48        89.46       157.41 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.63        18.35        21.47       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF 
      206.86       129.70        28.27        68.94        58.88       101.52 
TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
      170.17        85.35        70.16        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B4 TCGA-BH-A0B5 
       62.93        25.55        63.09        81.44        39.16        70.22 
TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       81.63        84.13        51.68        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       61.51        21.70        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       76.60        53.95        77.95        49.05        41.75        44.02 
TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK 
       89.06        45.83        77.98        23.44        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       78.28        17.26        15.65         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E7 TCGA-BH-A0E9 
       67.86        70.88        16.27        15.68        44.81        46.19 
TCGA-BH-A0EA TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       32.58        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       53.26        24.56        23.08        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
        2.50        13.61        36.85        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J 
       24.95        42.35        44.81        32.91         4.90        20.12 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S 
       26.66        72.56        37.74        30.28        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW 
        7.36        51.39        91.99        82.85        42.28        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        89.16        24.62 
TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      120.62        33.17        74.73       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 
       55.00       144.59        72.07        28.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        10.65         6.44        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A8FY TCGA-BH-A8FZ 
      109.28        20.88        23.51         9.63         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12Q 
       21.76         9.44        11.77        11.77        12.66        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 
       12.66        12.66        48.53        12.56        13.51         1.87 
TCGA-C8-A135 TCGA-C8-A1HE TCGA-C8-A1HI TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A1HO 
       12.92        12.33        11.28        10.42        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       20.25        12.36        12.95         9.67         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR 
        9.50        14.43        12.95        13.02        12.49        13.41 
TCGA-C8-A9FZ TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       19.46        13.25        20.58        13.48        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       17.49        15.78        18.15        18.90        12.03        53.00 
TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS 
       14.01        20.09        20.12        19.40        20.38        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       13.32        14.70        18.58        16.73        25.74        23.90 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XL 
       12.39        17.16        15.22        14.73        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XW 
       17.69        55.30        16.31        16.64        12.99        43.04 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
       15.32        15.52        14.24        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43        48.03        16.41        13.48         4.80 
TCGA-D8-A27P TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
        1.61        12.53        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A 
       12.66        25.22        43.00        34.42        27.52        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14P TCGA-E2-A14Q 
       37.51        40.11        28.44        28.87        40.96        38.24 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A150 
       33.17        75.98        43.33        34.26        32.02        63.62 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        14.79        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J 
       22.82        17.29        21.63        18.21        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
        9.04        20.58        11.05        50.79        19.56        56.94 
TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       51.39        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK 
       16.47        77.65        37.41        70.36        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 
        3.88        60.99        11.08        54.18        73.64        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LL TCGA-E2-A2P6 
       24.59        75.81        28.90        50.07        43.04        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU 
       43.56         8.28        30.61        38.76        34.29        17.69 
TCGA-E9-A1N3 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH 
       34.82        36.82        34.16        35.77        25.84        18.94 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG 
       11.15        48.23        40.24         1.12         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       46.59        34.45        32.05        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       41.03        40.50        20.12         0.69        38.99         1.94 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A54X 
       24.56        12.33        29.72         9.47        32.91        23.90 
TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
       26.70        25.81        27.85        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.21        13.25        16.57        15.68        25.94        29.95 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P6 
       40.41        41.13        39.78        52.96        29.82        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PG TCGA-EW-A2FS 
       30.08        18.90        19.99        13.94        34.55        52.73 
TCGA-EW-A3E8 TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD 
       34.03        23.51        16.77        24.99        31.30        33.21 
TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DI 
        7.40        59.57       216.76        79.10        83.34        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        69.30        66.38        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 
       62.47        11.84        21.24        13.22         7.10        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       10.62        24.95        32.75        29.23        25.05        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ 
       15.32        14.70        14.47        14.79        22.26         2.63 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       15.68         7.46        14.50        19.53        17.49        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
       22.39         2.10        36.30        58.62        40.08        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K 
       36.36        28.87        24.72        26.70        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        26.04        17.36        14.07        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
        8.91        64.21        86.96         0.26         9.93        18.81 
TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA15 
       18.48        20.68        19.27        13.84        18.87        17.26 
TCGA-S3-AA17 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       13.94         3.81        66.84        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35       108.07       107.05 

  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                       282.90                        281.29 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                        27.25                         28.14 
[1] "0.0 - 282.9 (27.2)" "0.0 - 281.3 (28.1)"
[1] "hr=" "1.1"
D32V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  3(2Q37.3) MUTATED        21       19        0        1       109
  DEL PEAK  3(2Q37.3) WILD-TYPE      68       66        6        5       244
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  3(2Q37.3) MUTATED          75         1         45         13
  DEL PEAK  3(2Q37.3) WILD-TYPE       177         1        109         16
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  3(2Q37.3) MUTATED           17        8         0       5
  DEL PEAK  3(2Q37.3) WILD-TYPE         48       12         1       8
D32V3, multiclass
            clus
vv           DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  STAGE I                             21                            68
  STAGE IA                            19                            66
  STAGE IB                             0                             6
  STAGE II                             1                             5
  STAGE IIA                          109                           244
  STAGE IIB                           75                           177
  STAGE III                            1                             1
  STAGE IIIA                          45                           109
  STAGE IIIB                          13                            16
  STAGE IIIC                          17                            48
  STAGE IV                             8                            12
  STAGE TIS                            0                             1
  STAGE X                              5                             8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  3(2Q37.3) MUTATED    61 197  38  19
  DEL PEAK  3(2Q37.3) WILD-TYPE 215 427  98  21
D32V4, multiclass
    clus
vv   DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  T1                          61                           215
  T2                         197                           427
  T3                          38                            98
  T4                          19                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  3(2Q37.3) MUTATED   152  99  41  19
  DEL PEAK  3(2Q37.3) WILD-TYPE 355 259  78  58
D32V5, multiclass
    clus
vv   DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  N0                         152                           355
  N1                          99                           259
  N2                          41                            78
  N3                          19                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V6, binary
                               cls
clus                              0   1
  DEL PEAK  3(2Q37.3) MUTATED   262   9
  DEL PEAK  3(2Q37.3) WILD-TYPE 627  13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED    262    9
  DEL PEAK  3(2Q37.3) WILD-TYPE  627   13
   clus
vv  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  0                         262                           627
  1                           9                            13
[1] 2 2
[1] FALSE
D32V7, binary
                               cls
clus                              0   1
  DEL PEAK  3(2Q37.3) MUTATED   314   3
  DEL PEAK  3(2Q37.3) WILD-TYPE 754   9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED    314    3
  DEL PEAK  3(2Q37.3) WILD-TYPE  754    9
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  FEMALE                         314                           754
  MALE                             3                             9
[1] 2 2
[1] FALSE
D32V8, binary
                               cls
clus                              0   1
  DEL PEAK  3(2Q37.3) MUTATED   122 158
  DEL PEAK  3(2Q37.3) WILD-TYPE 307 360
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED    122  158
  DEL PEAK  3(2Q37.3) WILD-TYPE  307  360
     clus
vv    DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  NO                          122                           307
  YES                         158                           360
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  3(2Q37.3) MUTATED                            0
  DEL PEAK  3(2Q37.3) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  3(2Q37.3) MUTATED                             261
  DEL PEAK  3(2Q37.3) WILD-TYPE                           509
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  3(2Q37.3) MUTATED                               26
  DEL PEAK  3(2Q37.3) WILD-TYPE                            174
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  3(2Q37.3) MUTATED                     3                     5
  DEL PEAK  3(2Q37.3) WILD-TYPE                   3                     4
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  3(2Q37.3) MUTATED                                 10
  DEL PEAK  3(2Q37.3) WILD-TYPE                               19
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  3(2Q37.3) MUTATED                    3              8
  DEL PEAK  3(2Q37.3) WILD-TYPE                 14             39
D32V9, multiclass
                                  clus
vv                                 DEL PEAK  3(2Q37.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            261
  INFILTRATING LOBULAR CARCINOMA                            26
  MEDULLARY CARCINOMA                                        3
  METAPLASTIC CARCINOMA                                      5
  MIXED HISTOLOGY (PLEASE SPECIFY)                          10
  MUCINOUS CARCINOMA                                         3
  OTHER  SPECIFY                                             8
                                  clus
vv                                 DEL PEAK  3(2Q37.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              509
  INFILTRATING LOBULAR CARCINOMA                             174
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        4
  MIXED HISTOLOGY (PLEASE SPECIFY)                            19
  MUCINOUS CARCINOMA                                          14
  OTHER  SPECIFY                                              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  3(2Q37.3) MUTATED                                  0    25
  DEL PEAK  3(2Q37.3) WILD-TYPE                                1    35
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  3(2Q37.3) MUTATED                          58   197
  DEL PEAK  3(2Q37.3) WILD-TYPE                       123   548
D32V11, multiclass
                                  clus
vv                                 DEL PEAK  3(2Q37.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     25
  BLACK OR AFRICAN AMERICAN                                 58
  WHITE                                                    197
                                  clus
vv                                 DEL PEAK  3(2Q37.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       35
  BLACK OR AFRICAN AMERICAN                                  123
  WHITE                                                      548
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V12, binary
                               cls
clus                              0   1
  DEL PEAK  3(2Q37.3) MUTATED    13 243
  DEL PEAK  3(2Q37.3) WILD-TYPE  26 632
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED     13  243
  DEL PEAK  3(2Q37.3) WILD-TYPE   26  632
                        clus
vv                       DEL PEAK  3(2Q37.3) MUTATED
  HISPANIC OR LATINO                              13
  NOT HISPANIC OR LATINO                         243
                        clus
vv                       DEL PEAK  3(2Q37.3) WILD-TYPE
  HISPANIC OR LATINO                                26
  NOT HISPANIC OR LATINO                           632
[1] 2 2
[1] FALSE

Clustering(33) Variable = DEL PEAK  4(3P21.31) MUTATION ANALYSIS
D33V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  4(3P21.31) MUTATED   288  55
  DEL PEAK  4(3P21.31) WILD-TYPE 629  92
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           343                            721 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                            55                             92 
$`DEL PEAK  4(3P21.31) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-5L-AAT0 TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SK 
      129.14       131.67        48.56        48.10        47.24        31.79 
TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CL TCGA-A2-A0CM 
       28.01        18.02        73.84        87.25        99.12        24.79 
TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D4 
       75.25       107.93        56.81        67.33        34.55        25.22 
TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T3 
       80.28        79.76        44.88        50.43        17.52        49.84 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A25E TCGA-A2-A3XS 
       48.46        23.77        22.45        19.20       105.34        33.93 
TCGA-A2-A3XX TCGA-A2-A4RW TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CJ 
       47.31         7.30        26.96        21.90        35.31        30.61 
TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       35.67        31.73        24.26        23.80        21.73        22.32 
TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.93        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06U 
       10.29         9.37        10.42         8.75         1.02        29.03 
TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A08B 
       31.00         1.02        18.97        18.97        12.00        38.01 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A09A TCGA-A8-A09D TCGA-A8-A09I 
        9.99        31.00        31.00         9.99        50.04        45.07 
TCGA-A8-A09M TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A4 TCGA-AC-A23C TCGA-AC-A2BK 
       33.07        15.02        14.01        13.02         0.95        73.05 
TCGA-AC-A2FO TCGA-AC-A3OD TCGA-AC-A3W5 TCGA-AC-A5XS TCGA-AC-A6IX TCGA-AC-A7VB 
       74.14        14.83        16.57        19.33        12.26         8.22 
TCGA-AC-A8OQ TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AK 
        1.12         0.23         0.62         1.78         1.71         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FL 
        7.46         0.16         0.33         0.33         7.96         7.59 
TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03L 
        0.33         0.33         0.33         0.33         0.33        80.28 
TCGA-AO-A03M TCGA-AO-A03T TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       61.35        47.87        21.40        52.18        26.04        37.48 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JM TCGA-AO-A124 
       21.53        50.70        76.77        26.24        71.80       115.27 
TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
      108.72       108.03        41.62        61.87        70.39         0.53 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TS TCGA-AR-A0TT 
       26.93       130.09         2.56       140.55        84.10       109.02 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U4 
       64.83        55.86       107.24       133.22        83.87       107.21 
TCGA-AR-A1AH TCGA-AR-A1AQ TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24S 
      125.16        99.32       160.90        94.22       104.28        97.84 
TCGA-AR-A24T TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LO 
      105.27        98.66        99.62        71.05        93.83        39.39 
TCGA-AR-A5QP TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
       38.96        12.13       129.57        65.72       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IQ TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0WS 
      233.62        18.77       140.88       162.05       100.70        97.48 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A1KI TCGA-B6-A409 TCGA-BH-A0AU 
       18.35        21.47       113.79        73.51        18.84        62.93 
TCGA-BH-A0AZ TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BF 
       63.09        39.16        81.63        51.68        32.02        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BW TCGA-BH-A0BZ 
       61.51        21.70        74.89        76.60        77.95        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       41.75        44.02        90.97        23.44        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E9 TCGA-BH-A0H7 
       13.91        78.28        16.27         4.41        46.19        23.08 
TCGA-BH-A0HA TCGA-BH-A0HU TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A18F TCGA-BH-A18G 
       52.96        12.89        50.79         5.59        32.91         4.90 
TCGA-BH-A18J TCGA-BH-A18L TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18T 
       20.12        26.66        30.28        55.63        37.55         7.36 
TCGA-BH-A1EN TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F8 TCGA-BH-A1FM 
       67.50        12.00        55.69        17.69        24.62        45.63 
TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A208 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 
       72.07        72.07        57.83        10.52        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A134 
       11.93        11.77        12.66        48.53         3.16        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.92         4.11        10.92        11.34         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A27B 
       12.33        20.25        12.53         9.67         9.53        14.43 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-D8-A13Z TCGA-D8-A145 TCGA-D8-A147 
       12.95        13.02        12.49        20.88        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JG 
       14.17        17.49        55.50        15.78        18.15        53.00 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1XB 
       20.09        20.12        19.40        21.01        18.58        18.15 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XY 
       21.80        14.50        19.92        16.64        12.99        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27M 
       15.32         9.93        14.14        16.04        13.05        13.48 
TCGA-D8-A27N TCGA-D8-A27R TCGA-E2-A10C TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A14W 
        4.80        10.09        40.11        38.60        34.26        32.02 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A155 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A 
       63.62        69.96        21.04        14.79        25.05        23.34 
TCGA-E2-A1AZ TCGA-E2-A1IE TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1LE 
       76.57        77.65        33.70        60.99        60.36        28.90 
TCGA-E2-A1LH TCGA-E2-A1LL TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N8 
      106.75        43.04        38.76        34.29        17.69        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NF TCGA-E9-A1R2 TCGA-E9-A1R4 
       36.20        36.56        39.55        35.24        34.95         6.12 
TCGA-E9-A1R7 TCGA-E9-A1RG TCGA-E9-A226 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22E 
       48.23        21.27        34.45        42.25        37.74        41.72 
TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A295 TCGA-E9-A2JS TCGA-EW-A1IZ TCGA-EW-A1J1 
       40.73         0.69        12.33        29.72        18.21        18.90 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 
       28.77        25.94        22.82        29.82        23.11         7.86 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A3E8 TCGA-EW-A3U0 
        6.15        13.94        55.00        52.73        34.03        17.49 
TCGA-EW-A423 TCGA-EW-A6S9 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DF 
       10.16        15.22         7.40       109.87        79.10        70.85 
TCGA-GM-A2DH TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YX 
       72.10       110.50        38.20        69.30         2.60        11.57 
TCGA-LD-A7W5 TCGA-LL-A5YL TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A7T0 TCGA-LL-A8F5 
        7.10        17.06        14.79        16.08        12.36        19.59 
TCGA-LL-A9Q3 TCGA-OK-A5Q2 TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       17.49         2.10        36.36        24.72        22.32        20.38 
TCGA-OL-A66K TCGA-OL-A66N TCGA-OL-A6VO TCGA-PE-A5DC TCGA-S3-A6ZF TCGA-S3-A6ZG 
       41.92        26.04        28.21        47.01        18.81        18.48 
TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA17 TCGA-V7-A7HQ TCGA-XX-A89A 
       21.07        19.27        13.84        13.94        66.84        16.04 
TCGA-Z7-A8R5 
      108.07 

$`DEL PEAK  4(3P21.31) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB 
       42.81        40.14        11.44        48.36         9.96         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM 
       14.37        43.43        14.27        20.88        13.68         7.96 
TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R 
       39.32        19.20        18.21       143.15        78.41       121.94 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CO 
       63.12       101.98        55.43        36.13       136.73       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV 
       92.48        88.60       107.93        77.19         5.19        98.99 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0ER 
       33.76        61.58       101.72        89.36       118.45        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SY TCGA-A2-A0T1 
       63.29        99.19        54.64        27.12        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC 
        8.38        20.52        17.46        18.90        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI 
       25.28        18.21        50.47        21.90        21.67        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       18.61        19.33        31.73        23.47        17.36        60.72 
TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       20.25        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT 
       17.19        18.15        10.59        36.23        39.65        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       29.98        32.75        56.28        35.93        50.37        50.83 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG 
       24.39        21.30        23.21        21.14        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F 
       35.47        37.45        33.11        29.79        20.19        25.15 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       23.61        29.56        31.36        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       10.59        10.29        11.28        13.41        14.70        11.97 
TCGA-A7-A4SB TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06R 
       13.74        10.72        11.05        13.02        13.02        17.98 
TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       53.06        26.01        17.03        53.98         9.01        43.00 
TCGA-A8-A07E TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R 
       19.99        14.01        32.05         9.99        10.98         8.98 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 
        7.99        24.99         9.99        45.07        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I 
       13.02         0.99        28.96        33.01        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       37.05         0.99        33.01       112.08        43.00        40.01 
TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       33.01        30.97        17.95        41.98        12.00         9.99 
TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q 
       12.00         1.02        49.05        29.98         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A6 
        8.98        19.04         0.99        12.00        19.04        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G 
        0.99        27.02        17.03        38.04        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
        5.72         1.48        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       60.92        87.12        26.04        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM 
       32.45         6.48        16.31        22.19        24.13        25.05 
TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE 
       14.99        19.79        15.48        23.24        24.79        29.26 
TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y 
       16.80        14.53        14.96        11.44        13.71        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR 
       18.67        13.58         1.68         0.03        20.19         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A0AJ 
        2.30         0.33         0.33         0.33         2.96         9.96 
TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS 
        0.33         6.44         5.65         7.00         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XO 
        7.04         0.33         0.36         0.33         5.36        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03N 
        0.30         0.33         0.33         5.33         5.59        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       81.63        95.70        68.75        58.95        29.13        32.78 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF 
       20.32        22.36        53.03        50.86        72.00        65.10 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A12A 
       50.24        62.04        55.33        99.25       106.78        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        64.04        57.30        48.36        40.57        14.73 
TCGA-AO-A1KP TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       82.62        17.79        24.79         5.65        15.62        32.52 
TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TV TCGA-AR-A0TW 
       32.91        19.20        98.33         5.26        75.22        98.93 
TCGA-AR-A0U0 TCGA-AR-A0U3 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
       65.36       134.14       108.36       101.00       103.86        97.68 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS 
       98.33        96.00        86.07        93.90        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K 
       94.29        61.28        86.53        86.43        33.73        50.89 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24U 
      120.33        99.78       118.59         2.76       112.77        77.69 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 
      105.30        32.58        98.76        89.00        93.30        85.64 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      166.42        20.25        86.53        54.21        66.15        63.62 
TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QQ 
       38.17        40.54        57.27        73.35        33.30        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IM 
       77.62       143.38       281.29       275.87        50.70       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
       84.59       165.76       129.07       255.68        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ 
      234.28        81.17        78.02       263.28       102.77       140.48 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WZ 
       89.46       282.90       157.41       188.68        79.63       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.88        43.59 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
      101.52       139.17       170.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW 
       70.16        68.12       103.63        71.15        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B7 
       25.55        81.44        40.83        39.55        70.22        84.13 
TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       37.22        18.21        61.68        72.23        75.48        74.14 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE 
       53.95        45.57        49.94        89.06        45.83        77.98 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       17.26        15.65         3.22         2.56        38.47        67.86 
TCGA-BH-A0DX TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0EA 
       70.88        15.68        14.30         9.63        44.81        32.58 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        24.43        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HI 
       37.78        53.26        24.56        41.00        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0HX 
        5.85         2.50        13.61        36.85        51.32        27.25 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18I 
       23.93        24.95        42.35        44.81        23.05        35.93 
TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A18V 
       90.84        72.56        37.74        66.05        51.39        51.16 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1F0 
       91.99       113.82        82.85        42.28        49.58        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       31.53        89.16        97.48       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR 
       74.73       122.89        36.92        63.35        55.00       144.59 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O 
       28.14        26.14        38.60        83.31       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 
        6.44        20.12       109.28        20.88         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N 
        9.70        18.87        21.76         9.44        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        12.66        12.56 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HI TCGA-C8-A1HL 
       13.51         1.87         4.08        12.33        11.28        10.42 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A275 
       12.95        12.33        12.36        12.95         8.28         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y 
        9.50        24.56        33.99        13.41        19.46        56.81 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A1JA 
       13.25        20.58        13.97        14.17        21.14        16.50 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JN 
       18.90        12.03        14.01        18.97        20.09        20.38 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       12.20        13.32        14.70        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        12.39        17.16        15.22        14.73 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XV 
       17.69        55.30        16.41        15.85        16.31        15.16 
TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I 
       43.04        15.52        14.24        17.42        13.45        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
       48.03        16.41         1.61        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18        12.66        25.22 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       33.17        75.98        43.33        31.96        69.34        18.51 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.24        19.43        23.87        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
       20.58        11.05        50.79        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       51.39        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ 
       16.47        37.25        37.41        70.36        33.73        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 
       59.18         3.88        22.19        11.08        54.18        73.64 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A1LK 
       19.66        24.59        75.81        50.07       102.61         8.75 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       26.99        34.55        43.56         8.28        30.61        34.92 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1ND TCGA-E9-A1NE 
       34.82        32.88        36.82        22.29        41.62        35.77 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R3 
       25.84        18.94         9.86        24.82        28.27         2.56 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
        3.02        11.15        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A22A 
       46.65         6.58        46.59        47.64        32.05        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 
       38.37        41.03        40.50        20.12        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
        7.13        24.56         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1J2 
       26.40        27.85        12.20        39.72         8.48        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       16.57        15.68        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB 
       39.78        52.96        18.48        30.08        18.90        19.99 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A2FW 
       10.52        14.43        34.55        19.96        25.91        22.09 
TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GM-A2D9 
       23.51        16.77        24.99        31.30        33.21        59.57 
TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
      216.76        83.34        75.02        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 
      106.06       101.62        85.35        43.73        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U 
       13.55        18.12        62.47        11.84        21.24        13.22 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y 
       15.32        14.70        14.47        22.26         2.63        15.68 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OL-A5D6 
        7.46        14.50        19.53        27.91        22.39        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       58.52        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P 
       26.70        23.47        65.62        42.77        17.36        14.07 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX 
       19.73        40.11         8.91        64.21        86.96         0.16 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA0Z TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
        0.26         9.93        20.68        18.87        17.39        17.26 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
       17.03         3.81        11.41        52.96        29.03        15.35 
TCGA-Z7-A8R6 
      107.05 

  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                        233.62                         282.90 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                         26.04                          28.44 
[1] "0.2 - 233.6 (26.0)" "0.0 - 282.9 (28.4)"
[1] "hr=" "1.3"
D33V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  4(3P21.31) MUTATED        18       19        1        1       126
  DEL PEAK  4(3P21.31) WILD-TYPE      71       66        5        5       227
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  4(3P21.31) MUTATED          86         0         53          8
  DEL PEAK  4(3P21.31) WILD-TYPE       166         2        101         21
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  4(3P21.31) MUTATED           21        7         1       4
  DEL PEAK  4(3P21.31) WILD-TYPE         44       13         0       9
D33V3, multiclass
            clus
vv           DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  STAGE I                              18                             71
  STAGE IA                             19                             66
  STAGE IB                              1                              5
  STAGE II                              1                              5
  STAGE IIA                           126                            227
  STAGE IIB                            86                            166
  STAGE III                             0                              2
  STAGE IIIA                           53                            101
  STAGE IIIB                            8                             21
  STAGE IIIC                           21                             44
  STAGE IV                              7                             13
  STAGE TIS                             1                              0
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK  4(3P21.31) MUTATED    60 236  39  10
  DEL PEAK  4(3P21.31) WILD-TYPE 216 388  97  30
D33V4, multiclass
    clus
vv   DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  T1                           60                            216
  T2                          236                            388
  T3                           39                             97
  T4                           10                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK  4(3P21.31) MUTATED   161 112  46  23
  DEL PEAK  4(3P21.31) WILD-TYPE 346 246  73  54
D33V5, multiclass
    clus
vv   DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  N0                          161                            346
  N1                          112                            246
  N2                           46                             73
  N3                           23                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V6, binary
                                cls
clus                               0   1
  DEL PEAK  4(3P21.31) MUTATED   285   8
  DEL PEAK  4(3P21.31) WILD-TYPE 604  14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  4(3P21.31) MUTATED    285    8
  DEL PEAK  4(3P21.31) WILD-TYPE  604   14
   clus
vv  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  0                          285                            604
  1                            8                             14
[1] 2 2
[1] FALSE
D33V7, binary
                                cls
clus                               0   1
  DEL PEAK  4(3P21.31) MUTATED   343   4
  DEL PEAK  4(3P21.31) WILD-TYPE 725   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  4(3P21.31) MUTATED    343    4
  DEL PEAK  4(3P21.31) WILD-TYPE  725    8
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  FEMALE                          343                            725
  MALE                              4                              8
[1] 2 2
[1] FALSE
D33V8, binary
                                cls
clus                               0   1
  DEL PEAK  4(3P21.31) MUTATED   123 179
  DEL PEAK  4(3P21.31) WILD-TYPE 306 339
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  4(3P21.31) MUTATED    123  179
  DEL PEAK  4(3P21.31) WILD-TYPE  306  339
     clus
vv    DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  NO                           123                            306
  YES                          179                            339
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK  4(3P21.31) MUTATED                            1
  DEL PEAK  4(3P21.31) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  4(3P21.31) MUTATED                             285
  DEL PEAK  4(3P21.31) WILD-TYPE                           485
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  4(3P21.31) MUTATED                               41
  DEL PEAK  4(3P21.31) WILD-TYPE                            159
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  4(3P21.31) MUTATED                     1                     2
  DEL PEAK  4(3P21.31) WILD-TYPE                   5                     7
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  4(3P21.31) MUTATED                                  6
  DEL PEAK  4(3P21.31) WILD-TYPE                               23
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  4(3P21.31) MUTATED                    1             10
  DEL PEAK  4(3P21.31) WILD-TYPE                 16             37
D33V9, multiclass
                                  clus
vv                                 DEL PEAK  4(3P21.31) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             285
  INFILTRATING LOBULAR CARCINOMA                             41
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            6
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                             10
                                  clus
vv                                 DEL PEAK  4(3P21.31) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               485
  INFILTRATING LOBULAR CARCINOMA                              159
  MEDULLARY CARCINOMA                                           5
  METAPLASTIC CARCINOMA                                         7
  MIXED HISTOLOGY (PLEASE SPECIFY)                             23
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  4(3P21.31) MUTATED                                  0    26
  DEL PEAK  4(3P21.31) WILD-TYPE                                1    34
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  4(3P21.31) MUTATED                          72   224
  DEL PEAK  4(3P21.31) WILD-TYPE                       109   521
D33V11, multiclass
                                  clus
vv                                 DEL PEAK  4(3P21.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      26
  BLACK OR AFRICAN AMERICAN                                  72
  WHITE                                                     224
                                  clus
vv                                 DEL PEAK  4(3P21.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        34
  BLACK OR AFRICAN AMERICAN                                   109
  WHITE                                                       521
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V12, binary
                                cls
clus                               0   1
  DEL PEAK  4(3P21.31) MUTATED    11 286
  DEL PEAK  4(3P21.31) WILD-TYPE  28 589
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  4(3P21.31) MUTATED     11  286
  DEL PEAK  4(3P21.31) WILD-TYPE   28  589
                        clus
vv                       DEL PEAK  4(3P21.31) MUTATED
  HISPANIC OR LATINO                               11
  NOT HISPANIC OR LATINO                          286
                        clus
vv                       DEL PEAK  4(3P21.31) WILD-TYPE
  HISPANIC OR LATINO                                 28
  NOT HISPANIC OR LATINO                            589
[1] 2 2
[1] FALSE

Clustering(34) Variable = DEL PEAK  5(4P16.3) MUTATION ANALYSIS
D34V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  5(4P16.3) MUTATED   286  49
  DEL PEAK  5(4P16.3) WILD-TYPE 631  98
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          335                           729 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                           49                            98 
$`DEL PEAK  5(4P16.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SN 
      129.14       131.67        42.81        20.88        31.79        39.32 
TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CS 
       28.01        73.84        87.25        99.12        24.79        77.19 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0EQ TCGA-A2-A0SV TCGA-A2-A0T1 
       98.99       107.93        67.33        79.76        27.12        17.13 
TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A1FW 
       49.84        20.75        18.21        21.67        18.61        17.36 
TCGA-A2-A1G1 TCGA-A2-A25C TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3Y0 TCGA-A2-A4RW 
       19.20        17.19        33.93        91.07        50.83         7.30 
TCGA-A2-A4RX TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A13D 
       24.39        21.90        38.30        35.31        30.61        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A4SD TCGA-A7-A56D 
       20.19        25.15        23.74        22.32        14.50        14.73 
TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06T TCGA-A8-A06X 
       12.10        10.29         9.37        10.42        53.06        31.00 
TCGA-A8-A06Y TCGA-A8-A07B TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A084 TCGA-A8-A085 
       26.01        43.00         9.99         8.98        15.06        36.95 
TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08X TCGA-A8-A092 
       38.01        33.01        12.00         9.99        43.00        30.97 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09X TCGA-AC-A23C 
        1.02        49.05        45.07        33.07        14.01         0.95 
TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A5EH 
       22.95        73.05        19.33        32.45         6.48        16.80 
TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OP 
       19.33        11.44        17.42        13.58         0.03        20.19 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AK 
        0.23         0.33         2.96         1.78         1.71         7.36 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ 
        0.16         0.33         0.33         0.33         6.44         7.96 
TCGA-AN-A0FK TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XN TCGA-AN-A0XO 
        7.00         7.04         0.33         0.33         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03N TCGA-AO-A0J3 
        0.30         0.33         0.33         0.33        66.77        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0JB TCGA-AO-A0JM TCGA-AO-A124 
       52.18        37.48        20.32        50.70        71.80       115.27 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KS 
      108.03        90.58        64.04        48.36        41.62         0.53 
TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AR-A0TP TCGA-AR-A0TR 
       17.79        26.93       130.09         5.65       140.55         5.26 
TCGA-AR-A0TS TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 
       84.10        55.86        65.36       133.22       134.14       107.21 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AQ TCGA-AR-A1AR 
      125.16       108.36        98.33        96.00        99.32        17.23 
TCGA-AR-A24K TCGA-AR-A24O TCGA-AR-A24Q TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A251 
       50.89       118.59       104.28       105.30        32.58        99.62 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LO TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0I1 
       71.05        93.83        39.39        33.30        10.59        77.62 
TCGA-B6-A0IB TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0IQ 
      129.57       146.50       112.37       233.62       165.76       140.88 
TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RL TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WV 
      255.68       212.25        81.17       100.70       282.90        79.63 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A400 
       21.47       113.79       245.10        43.59        73.51         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-BH-A0AW TCGA-BH-A0AZ 
       85.35        70.16        68.12        18.84        20.45        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0BA TCGA-BH-A0BF 
       81.44        39.55        39.16        70.22        37.22        43.53 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0C0 
       21.70        74.89        76.60        45.57        49.94        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DI TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E6 
       44.02        90.97        29.98        70.88         4.41         9.63 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0HI TCGA-BH-A0HU TCGA-BH-A0RX TCGA-BH-A0W3 
       46.19        24.49        20.38        12.89         5.59        23.93 
TCGA-BH-A18F TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EU 
       32.91        55.63         7.36        51.39        51.16        42.28 
TCGA-BH-A1EV TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FU TCGA-BH-A203 
       12.00        25.81        97.48        24.62        72.07        38.60 
TCGA-BH-A209 TCGA-BH-A5IZ TCGA-C8-A12P TCGA-C8-A12Z TCGA-C8-A135 TCGA-C8-A138 
      130.16        18.64        11.77        12.56        12.92         4.08 
TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A275 
       10.92         0.16        12.03        10.42        12.33         0.03 
TCGA-C8-A278 TCGA-C8-A27B TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A143 
        9.50        14.43        56.81        20.88        13.97        14.17 
TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JJ 
       19.20        16.50        18.90        12.03        53.00        20.09 
TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XF TCGA-D8-A1XG 
       20.12        19.40        23.90        27.58        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XU 
       21.80        14.50        55.30        15.85        16.64        12.99 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27T 
       43.04        16.54        14.24        14.14        16.04        13.08 
TCGA-D8-A73U TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14Z 
       16.18        47.15        44.68        40.96        38.60        18.51 
TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A159 TCGA-E2-A15E TCGA-E2-A15H TCGA-E2-A1AZ 
       63.62        19.43        25.05        20.71        12.92        76.57 
TCGA-E2-A1B0 TCGA-E2-A1BD TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1L8 TCGA-E2-A1LG 
       53.62        37.25        33.73        33.70        73.64        50.07 
TCGA-E2-A1LH TCGA-E2-A573 TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NC 
      106.75        34.92        32.88        22.29        34.16        39.55 
TCGA-E9-A1ND TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1R3 TCGA-E9-A1RA TCGA-E9-A1RB 
       41.62        18.94         9.86         2.56        45.01        32.09 
TCGA-E9-A228 TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A248 
       42.25        41.72        40.73        20.12         0.69         1.94 
TCGA-E9-A249 TCGA-E9-A3HO TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
        7.13        38.07        30.44        23.84        26.70         0.79 
TCGA-EW-A1IX TCGA-EW-A1J1 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1OZ 
       39.72        18.90        25.94        22.82        29.85        40.41 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A2FR 
       29.82        23.11         7.86         6.15        10.52        55.00 
TCGA-EW-A3U0 TCGA-EW-A6SB TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DB 
       17.49        24.99        33.21         7.40       109.87        79.10 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A3XL TCGA-JL-A3YW 
       70.85        72.10        85.15       115.69        69.30        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FR 
       11.57        32.75        15.32        14.70        14.79        16.08 
TCGA-LL-A73Z TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K 
        7.46        19.59        58.52        20.38        23.47        41.92 
TCGA-OL-A6VO TCGA-PE-A5DC TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LZ TCGA-S3-A6ZF 
       28.21        47.01        86.96         0.16         9.93        18.81 
TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA17 TCGA-WT-AB41 TCGA-WT-AB44 
       21.07        19.27        13.94        52.96        29.03 

$`DEL PEAK  5(4P16.3) WILD-TYPE`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB 
       40.14        11.44        48.56        48.36         9.96         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SJ 
       14.37        43.43        48.10        14.27        47.24        13.68 
TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        19.20        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
      121.94        63.12       101.98        55.43        36.13       136.73 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CT TCGA-A2-A0CU 
      114.81        92.48        88.60       107.93        75.25         5.19 
TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       56.81        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       89.36        80.28       118.45        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 
       54.64        44.88        50.43        44.28        17.52         8.38 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       20.52        17.46        18.90        32.55        25.28        50.47 
TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       21.90        49.48        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 
       23.47        60.72        22.45        20.25        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
       52.47       107.70        42.44        18.15       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       36.23        39.65        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
       35.93        50.37        21.30        23.21        26.96        21.14 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       34.29        35.47        37.45        35.67        33.11        29.79 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       23.61        29.56        31.36        24.26        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        11.34        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF 
       14.70        11.97        14.93        13.74        21.17        17.92 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       10.72        11.05         8.75        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       17.98        29.03         1.02        17.03        53.98         9.01 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       19.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A086 
       10.98         7.99        24.99         9.99        45.07        13.02 
TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P 
        0.99        28.96        19.96        37.05        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 
        0.99        33.01       112.08        40.01        33.01        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       29.98         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
        0.99        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       27.02        17.03        38.04        73.91         5.72         1.48 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3HN TCGA-AC-A3OD 
       26.04        74.14        33.04        14.66        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       22.19        24.13        25.05        14.99        16.57        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EI TCGA-AC-A5XU 
       15.48        23.24        24.79        29.26        14.53        14.96 
TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OQ 
       13.71        18.67        12.26         1.68         8.22         1.12 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A049 TCGA-AN-A0AJ 
        1.32         2.30         0.33         0.33         0.62         9.96 
TCGA-AN-A0AL TCGA-AN-A0FF TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW 
        7.46         5.65         7.59         7.17         6.90         0.36 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XR TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         5.36         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       80.28        61.35        81.63        95.70        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0J9 
       58.95        29.13        32.78        26.04        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       21.53        50.86        72.00        76.77        65.10        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       50.24        62.04        55.33        99.25       108.72       106.78 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       98.27        57.30        40.57        14.73        82.62        61.87 
TCGA-AO-A1KR TCGA-AQ-A04H TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O 
       70.39        24.79        15.62        32.52         2.56        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX 
       19.20        98.33       109.02        75.22        98.93        64.83 
TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AO 
      107.24        83.87       101.00       103.86        97.68        86.07 
TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       93.90        37.81        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24P 
       33.73       160.90        94.22       120.33        99.78         2.76 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A24Z 
      112.77        97.84       105.27        77.69        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       89.00        93.30        85.64       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR 
       54.21        66.15        63.62        38.17        40.54        57.27 
TCGA-AR-A5QM TCGA-AR-A5QP TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       73.35        38.96       143.38       281.29        12.13       275.87 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP 
       50.70        65.72        18.77       127.33        84.59       129.07 
TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       68.45       234.28        78.02       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW 
      140.48        89.46       157.41        97.48       188.68        18.35 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF 
      206.86       129.70        28.27        68.94        58.88       101.52 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
      139.17       170.17        37.87       103.63        71.15        62.93 
TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0B2 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 
       59.84        25.55        40.83        81.63        84.13        51.68 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       32.02        18.21        61.51        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0DD 
       74.14        53.95        77.95        49.05        89.06        45.83 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       77.98        23.44        38.01        13.91        78.28        17.26 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DZ 
       15.65         3.22         2.56        38.47        67.86        16.27 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI 
       15.68        14.30        44.81        32.58        31.00        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        37.78        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HO 
       23.08        41.00        52.96        26.50         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W4 
       13.61        36.85        51.32        27.25        50.79        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       42.35        44.81        23.05         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R 
       90.84        26.66        72.56        37.74        30.28        37.55 
TCGA-BH-A18S TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EW 
       66.05        67.50        91.99       113.82        82.85        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC 
       49.58        17.69        31.53        89.16       120.62       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.89        36.92        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 
       45.63        72.07       144.59        28.14        26.14        83.31 
TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       57.83        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ 
       20.88        23.51         9.63         5.26         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       21.76         9.44        11.93        11.77        11.77        12.66 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE 
        3.16        13.51         1.87        12.59         4.11        12.33 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       11.34        11.28        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A27A 
       12.36        12.95         8.28         9.67         9.53        24.56 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ 
       33.99        12.95        13.02        12.49        13.41        19.46 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.25        20.58        13.48        21.14        14.17        17.49 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL 
       55.50        15.78        18.15        14.01        18.97        20.09 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.38        21.01        12.20        13.32        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       17.79        16.73        25.74        18.15        12.39        17.16 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XV TCGA-D8-A1XZ 
       19.92        17.69        16.41        16.31        15.16        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       15.52         9.93        17.42        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48         4.80         1.61        10.09 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73W 
       12.53        12.26        33.37        18.51        21.67        12.66 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       25.22        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14Q TCGA-E2-A14S 
       37.51        40.11        28.44        28.87        38.24        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A 
       69.96        23.24        21.04        23.87        14.79        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J 
       22.82        17.29        21.63        18.21        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
        9.04        20.58        11.05        50.79        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       14.07        51.39        87.22        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK 
       16.47        77.65        37.41        70.36        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LI TCGA-E2-A1LK 
       19.66        24.59        75.81        28.90       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        26.99        34.55        43.56         8.28        30.61 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N5 TCGA-E9-A1N9 
       38.76        34.29        17.69        34.82        36.82        36.20 
TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 
       36.56        35.77        35.24        25.84        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RC 
       34.95         6.12         3.02        11.15        48.23        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       34.45        32.05        37.74        39.09        38.37        41.03 
TCGA-E9-A22H TCGA-E9-A247 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
       40.50        38.99        24.56        12.33        29.72         9.47 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE 
       32.91        30.18        23.90        25.81        26.40        27.85 
TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
       12.20         8.48        18.21        13.25        16.57        15.68 
TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 
       28.77        29.95        41.13        39.78        52.96        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A1PG 
       30.08        18.90        19.99        13.94        14.43        34.55 
TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 
       19.96        52.73        25.91        22.09        34.03        10.16 
TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SC TCGA-GM-A2D9 TCGA-GM-A2DA 
       23.51        15.22        16.77        31.30        59.57       216.76 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       83.34        75.02        86.96       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        43.73        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       18.12         2.60        62.47        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       13.28        10.62        24.95        29.23        25.05        17.06 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ 
       14.47        22.26         2.63        15.68        14.50        19.53 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       12.36        17.49        27.91        22.39         2.10        36.30 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       31.99        58.62        40.08        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N 
       24.72        22.32        26.70        65.62        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD 
       17.36        14.07        19.73        40.11         8.91        64.21 
TCGA-PL-A8LY TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
        0.26        18.48        20.68        13.84        18.87        17.39 
TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-XX-A899 
       17.26        17.03         3.81        66.84        11.41        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                         0.03                          0.26 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                       282.90                        281.29 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                        26.93                         28.27 
[1] "0.0 - 282.9 (26.9)" "0.3 - 281.3 (28.3)"
[1] "hr=" "1"  
D34V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  5(4P16.3) MUTATED        18       16        1        1       122
  DEL PEAK  5(4P16.3) WILD-TYPE      71       69        5        5       231
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  5(4P16.3) MUTATED          87         0         52          8
  DEL PEAK  5(4P16.3) WILD-TYPE       165         2        102         21
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  5(4P16.3) MUTATED           20        7         0       3
  DEL PEAK  5(4P16.3) WILD-TYPE         45       13         1      10
D34V3, multiclass
            clus
vv           DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  STAGE I                             18                            71
  STAGE IA                            16                            69
  STAGE IB                             1                             5
  STAGE II                             1                             5
  STAGE IIA                          122                           231
  STAGE IIB                           87                           165
  STAGE III                            0                             2
  STAGE IIIA                          52                           102
  STAGE IIIB                           8                            21
  STAGE IIIC                          20                            45
  STAGE IV                             7                            13
  STAGE TIS                            0                             1
  STAGE X                              3                            10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  5(4P16.3) MUTATED    59 226  39  13
  DEL PEAK  5(4P16.3) WILD-TYPE 217 398  97  27
D34V4, multiclass
    clus
vv   DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  T1                          59                           217
  T2                         226                           398
  T3                          39                            97
  T4                          13                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  5(4P16.3) MUTATED   153 118  42  22
  DEL PEAK  5(4P16.3) WILD-TYPE 354 240  77  55
D34V5, multiclass
    clus
vv   DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  N0                         153                           354
  N1                         118                           240
  N2                          42                            77
  N3                          22                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V6, binary
                               cls
clus                              0   1
  DEL PEAK  5(4P16.3) MUTATED   285   8
  DEL PEAK  5(4P16.3) WILD-TYPE 604  14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4P16.3) MUTATED    285    8
  DEL PEAK  5(4P16.3) WILD-TYPE  604   14
   clus
vv  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  0                         285                           604
  1                           8                            14
[1] 2 2
[1] FALSE
D34V7, binary
                               cls
clus                              0   1
  DEL PEAK  5(4P16.3) MUTATED   336   3
  DEL PEAK  5(4P16.3) WILD-TYPE 732   9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4P16.3) MUTATED    336    3
  DEL PEAK  5(4P16.3) WILD-TYPE  732    9
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  FEMALE                         336                           732
  MALE                             3                             9
[1] 2 2
[1] FALSE
D34V8, binary
                               cls
clus                              0   1
  DEL PEAK  5(4P16.3) MUTATED   132 167
  DEL PEAK  5(4P16.3) WILD-TYPE 297 351
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4P16.3) MUTATED    132  167
  DEL PEAK  5(4P16.3) WILD-TYPE  297  351
     clus
vv    DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  NO                          132                           297
  YES                         167                           351
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  5(4P16.3) MUTATED                            1
  DEL PEAK  5(4P16.3) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  5(4P16.3) MUTATED                             281
  DEL PEAK  5(4P16.3) WILD-TYPE                           489
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  5(4P16.3) MUTATED                               32
  DEL PEAK  5(4P16.3) WILD-TYPE                            168
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  5(4P16.3) MUTATED                     4                     3
  DEL PEAK  5(4P16.3) WILD-TYPE                   2                     6
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  5(4P16.3) MUTATED                                  6
  DEL PEAK  5(4P16.3) WILD-TYPE                               23
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  5(4P16.3) MUTATED                    0             12
  DEL PEAK  5(4P16.3) WILD-TYPE                 17             35
D34V9, multiclass
                                  clus
vv                                 DEL PEAK  5(4P16.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            281
  INFILTRATING LOBULAR CARCINOMA                            32
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      3
  MIXED HISTOLOGY (PLEASE SPECIFY)                           6
  MUCINOUS CARCINOMA                                         0
  OTHER  SPECIFY                                            12
                                  clus
vv                                 DEL PEAK  5(4P16.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              489
  INFILTRATING LOBULAR CARCINOMA                             168
  MEDULLARY CARCINOMA                                          2
  METAPLASTIC CARCINOMA                                        6
  MIXED HISTOLOGY (PLEASE SPECIFY)                            23
  MUCINOUS CARCINOMA                                          17
  OTHER  SPECIFY                                              35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  5(4P16.3) MUTATED                                  1    17
  DEL PEAK  5(4P16.3) WILD-TYPE                                0    43
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  5(4P16.3) MUTATED                          73   225
  DEL PEAK  5(4P16.3) WILD-TYPE                       108   520
D34V11, multiclass
                                  clus
vv                                 DEL PEAK  5(4P16.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     17
  BLACK OR AFRICAN AMERICAN                                 73
  WHITE                                                    225
                                  clus
vv                                 DEL PEAK  5(4P16.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       43
  BLACK OR AFRICAN AMERICAN                                  108
  WHITE                                                      520
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V12, binary
                               cls
clus                              0   1
  DEL PEAK  5(4P16.3) MUTATED    11 280
  DEL PEAK  5(4P16.3) WILD-TYPE  28 595
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4P16.3) MUTATED     11  280
  DEL PEAK  5(4P16.3) WILD-TYPE   28  595
                        clus
vv                       DEL PEAK  5(4P16.3) MUTATED
  HISPANIC OR LATINO                              11
  NOT HISPANIC OR LATINO                         280
                        clus
vv                       DEL PEAK  5(4P16.3) WILD-TYPE
  HISPANIC OR LATINO                                28
  NOT HISPANIC OR LATINO                           595
[1] 2 2
[1] FALSE

Clustering(35) Variable = DEL PEAK  6(4Q35.1) MUTATION ANALYSIS
D35V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  6(4Q35.1) MUTATED   285  55
  DEL PEAK  6(4Q35.1) WILD-TYPE 632  92
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                          340                           724 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                           55                            92 
$`DEL PEAK  6(4Q35.1) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO 
      129.14        42.81        20.88        31.79        39.32        28.01 
TCGA-A2-A04P TCGA-A2-A04W TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CS TCGA-A2-A0CV 
       18.02       101.98        99.12        24.79        77.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0EM TCGA-A2-A0EQ TCGA-A2-A0EY TCGA-A2-A0SV 
      107.93        67.33       101.72        79.76        63.29        27.12 
TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YJ 
       50.43        17.52        17.13        20.75        18.21        18.61 
TCGA-A2-A1FV TCGA-A2-A1G1 TCGA-A2-A25C TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A4RW 
       23.47        19.20        17.19        33.93        91.07         7.30 
TCGA-A2-A4RX TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A13F TCGA-A7-A26G 
       24.39        21.90        35.31        35.67        25.15        23.74 
TCGA-A7-A26I TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       21.73        14.93        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q 
       12.10        10.29         9.37        10.42         8.75         1.02 
TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A07B 
       17.98        53.06        31.00        26.01         1.02        43.00 
TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A08B 
       19.99        18.97         8.98         9.99        15.06        38.01 
TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08X 
       33.01        12.00         9.99        31.00         0.99        43.00 
TCGA-A8-A092 TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09R TCGA-A8-A09X 
       30.97        12.00        49.05        45.07         8.98        14.01 
TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A5EH 
       22.95        73.05        19.33        32.45         6.48        16.80 
TCGA-AC-A5XS TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A03Y 
       19.33        17.42        13.58         0.03         1.12         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS 
        0.23         0.33         0.62         7.46         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FY 
        0.33         6.44         7.96         7.00         7.59         0.33 
TCGA-AN-A0XP TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03N 
        0.30         0.33         0.33         0.33         5.59        66.77 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0JD 
       29.13        32.78        52.18        37.48        20.32        72.00 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KR 
      108.03        90.58        64.04        48.36        41.62        70.39 
TCGA-AO-A1KS TCGA-AQ-A0Y5 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TY 
        0.53         5.65       140.55         5.26       109.02        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AN 
       65.36       133.22       134.14       107.21       125.16        96.00 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24O 
       99.32        17.23        33.73       160.90        50.89       118.59 
TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A251 TCGA-AR-A256 TCGA-AR-A5QP 
       97.84       105.30        32.58        99.62        93.83        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0IB TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IO 
       10.59        77.62       129.57       112.37       233.62       165.76 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RL TCGA-B6-A0RS TCGA-B6-A0WV 
      140.88       255.68       212.25        81.17       100.70        79.63 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A3ZX TCGA-B6-A401 
       21.47       113.79        43.59        73.51        37.87        85.35 
TCGA-B6-A402 TCGA-B6-A40B TCGA-BH-A0AV TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 
       70.16       103.63        59.84        81.44        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BJ 
       70.22        81.63        37.22        32.02        43.53        21.70 
TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 
       75.48        76.60        45.57        49.94        49.05        41.75 
TCGA-BH-A0C1 TCGA-BH-A0DI TCGA-BH-A0DS TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0E9 
       44.02        29.98         2.56         4.41         9.63        46.19 
TCGA-BH-A0EB TCGA-BH-A0GZ TCGA-BH-A0HI TCGA-BH-A0HU TCGA-BH-A0HY TCGA-BH-A0RX 
       24.49        10.78        20.38        12.89        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18J TCGA-BH-A18Q TCGA-BH-A18R 
       23.93        23.05        32.91        20.12        55.63        37.55 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EU TCGA-BH-A1EV 
        7.36        51.39        51.16        67.50        42.28        12.00 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FD TCGA-BH-A1FN 
       17.69        25.81        97.48        24.62        33.17        72.07 
TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       38.60        57.83       130.16        18.64        23.51        11.93 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12U TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A138 
       12.66        11.77        12.66         1.87        12.59         4.08 
TCGA-C8-A1HE TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A26W TCGA-C8-A26X 
       12.33         0.16        12.03        12.33        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A8HP TCGA-C8-A8HR TCGA-D8-A13Y 
       12.95         9.50        14.43        13.02        13.41        56.81 
TCGA-D8-A13Z TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JE TCGA-D8-A1JF 
       20.88        19.20        14.17        16.50        18.90        12.03 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1XG TCGA-D8-A1XK 
       20.09        20.12        20.09        19.40        14.73        14.50 
TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU 
       19.92        55.30        16.41        15.85        16.31        12.99 
TCGA-D8-A27H TCGA-D8-A27M TCGA-D8-A27T TCGA-D8-A73U TCGA-E2-A14N TCGA-E2-A14O 
       13.05        13.48        13.08        16.18        47.15        44.68 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A158 TCGA-E2-A159 
       38.24        38.60        63.62        19.43        14.79        25.05 
TCGA-E2-A15H TCGA-E2-A15M TCGA-E2-A15S TCGA-E2-A1B0 TCGA-E2-A1B6 TCGA-E2-A1BD 
       12.92        11.05        14.07        53.62        28.50        37.25 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LA 
       33.73        33.70        60.99        60.36        73.64        24.59 
TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N6 
       50.07       106.75       102.61        34.92        38.76        22.29 
TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1NH TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1RA 
       34.16        39.55        18.94         2.56         6.12        45.01 
TCGA-E9-A1RB TCGA-E9-A1RF TCGA-E9-A226 TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 
       32.09         6.58        34.45        41.72        40.73         0.69 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A3X8 
        1.94         7.13        29.72        38.07        30.18        30.44 
TCGA-E9-A54Y TCGA-E9-A5FL TCGA-EW-A1J1 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OZ 
       23.84         0.79        18.90        25.94        22.82        40.41 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PH 
       29.82        23.11         7.86         6.15        10.52        19.96 
TCGA-EW-A2FR TCGA-EW-A3U0 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-GI-A2C8 TCGA-GI-A2C9 
       55.00        17.49        16.77        24.99         7.40       109.87 
TCGA-GM-A2DA TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A3XL TCGA-HN-A2NL 
      216.76        70.85        72.10        85.15        69.30         2.60 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FR 
       11.57        32.75        15.32        14.70        14.79        16.08 
TCGA-LL-A73Z TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66K 
        7.46        19.59        58.52        36.36        20.38        41.92 
TCGA-OL-A6VO TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-S3-A6ZH TCGA-S3-AA10 
       28.21        64.21        86.96         0.16        21.07        19.27 
TCGA-S3-AA14 TCGA-UL-AAZ6 TCGA-WT-AB41 TCGA-WT-AB44 
       17.39        17.03        52.96        29.03 

$`DEL PEAK  6(4Q35.1) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      131.67        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       13.68         7.96        19.20        18.21       143.15        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y 
      121.94        73.84        87.25        63.12        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CT 
      136.73       114.81        92.48        88.60       107.93        75.25 
TCGA-A2-A0CU TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
        5.19        56.81        34.55        33.76        61.58        25.22 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       89.36        80.28       118.45        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU 
       34.29        31.82        61.94        24.72        99.19        54.64 
TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.88        44.28         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       18.90        32.55        25.28        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW 
       49.48        19.33        48.46        31.73        23.77        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
      107.70        42.44        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       39.65        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
       50.37        50.83        21.30        23.21        26.96        21.14 
TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB 
       38.30        34.29        35.47        30.61        37.45        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E 
       29.79        31.73        20.19        23.61        29.56        31.36 
TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       24.26        23.80        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB 
       10.29        11.28        13.41        14.70        11.97        13.74 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06U TCGA-A8-A075 
       10.72        11.05        13.02        13.02        29.03        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       53.98         9.01        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A085 
        9.99        10.98         7.99        24.99        45.07        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08O 
       13.02         0.99        28.96        19.96        37.05        31.00 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 
       33.01       112.08        40.01        33.01        17.95        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09K 
       12.00         9.99         9.99         1.02        50.04        29.98 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       33.07         1.02        25.02        19.04        15.02         0.99 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       17.03        38.04         0.95        73.91         5.72         1.48 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3HN TCGA-AC-A3OD 
       26.04        74.14        33.04        14.66        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       22.19        24.13        25.05        14.99        16.57        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EI TCGA-AC-A5XU 
       15.48        23.24        24.79        29.26        14.53        14.96 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       11.44        13.71        18.67        12.26         1.68         8.22 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A04A TCGA-AN-A04C 
       20.19         1.32         2.30         0.33         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0FF TCGA-AN-A0FN 
        1.71         9.96         7.36         0.16         5.65         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XR TCGA-AN-A0XV TCGA-AO-A03L 
        5.36         0.33        12.33         0.33         5.33        80.28 
TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       61.35        81.63        95.70        68.75        47.87        58.95 
TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       21.40        26.04        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       50.86        76.77        65.10        26.24        50.24        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27        99.25       108.72       106.78 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       98.27        57.30        40.57        14.73        82.62        61.87 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       17.79        24.79        26.93       130.09        15.62        32.52 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TS TCGA-AR-A0TV 
        2.56        32.91        19.20        98.33        84.10        75.22 
TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A1AI TCGA-AR-A1AJ 
       98.93        64.83       107.24        83.87       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS 
      103.86        97.68        98.33        86.07        93.90        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24L TCGA-AR-A24M 
       94.29        61.28        86.53        86.43        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24U 
       99.78         2.76       104.28       112.77       105.27        77.69 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.76        98.66        89.00        93.30        85.64        71.05 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      166.42        20.25        86.53        54.21        66.15        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN 
       38.17        39.39        40.54        57.27        73.35        33.30 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE 
      143.38       281.29        12.13       275.87        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RG 
      146.50        18.77       127.33        84.59       129.07        68.45 
TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      234.28        78.02       263.28       162.05       102.77       140.48 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW 
       89.46       282.90       157.41        97.48       188.68        18.35 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.88 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A400 TCGA-B6-A408 TCGA-B6-A409 
      101.52       139.17       170.17         7.07        68.12        18.84 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B2 
       71.15        62.93        20.45        25.55        63.09        40.83 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BM 
       84.13        51.68        18.21        61.51        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0C3 TCGA-BH-A0C7 
       72.23        74.14        53.95        77.95        89.06        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DL 
       45.83        77.98        23.44        38.01        13.91        78.28 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       17.26        15.65         3.22        38.47        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EE 
       16.27        15.68        14.30        44.81        32.58        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       24.43        30.35        15.16        37.78        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HO 
       23.08        41.00        52.96        26.50         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0W4 TCGA-BH-A0W5 
       13.61        36.85        51.32        27.25        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
       44.81         4.90        35.93        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18S TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       37.74        30.28        66.05        91.99       113.82        82.85 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC 
       55.69        49.58        31.53        89.16       120.62       114.15 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A28O 
      144.59        72.07        28.14        26.14        83.31        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 
        6.44        20.12        10.52       109.28        20.88         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M 
        5.26         9.70        18.87        21.76         9.44        11.77 
TCGA-C8-A12N TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       11.77        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HF 
       12.56         3.16        13.51        12.92         4.11        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
       11.34        11.28        10.42        12.95        12.33        20.25 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A3M7 
        8.28         9.67         9.53         0.03        24.56        33.99 
TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       12.95        12.49        19.46        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC 
       14.17        13.48        21.14        17.49        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JN TCGA-D8-A1JP 
       18.15        53.00        14.01        18.97        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       25.74        23.90        27.58        18.15        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XM TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW 
       15.22        21.80        17.69        16.64        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       17.42        16.04        13.45        14.43        48.03        16.41 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        4.80         1.61        10.09        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 
       18.51        21.67        12.66        25.22        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       28.87        40.96        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 
       32.02        31.96        69.34        18.51        69.96        23.24 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       21.04        23.87        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       21.63        18.21        55.63        53.92         9.04        20.58 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B1 
       50.79        19.56        56.94        51.39        76.57        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       33.01        32.35        16.47        77.65        37.41        70.36 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 
       28.44        59.18         3.88        22.19        11.08        54.18 
TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 
       19.66        75.81        28.90         8.75        43.04        26.99 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU 
       34.55        43.56         8.28        30.61        34.29        17.69 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1ND 
       34.82        32.88        36.82        36.20        36.56        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.77        35.24        25.84         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RD 
       34.95         3.02        11.15        48.23        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 
       46.65        21.27        46.59        47.64        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 
       37.74        39.09        38.37        41.03        40.50        20.12 
TCGA-E9-A247 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A54X 
       38.99        24.56        12.33         9.47        32.91        23.90 
TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70        25.81        26.40        27.85        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 
        8.48        18.21        13.25        16.57        15.68        28.77 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 
       29.95        29.85        41.13        39.78        52.96        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A1PG 
       30.08        18.90        19.99        13.94        14.43        34.55 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 
       52.73        25.91        22.09        34.03        10.16        23.51 
TCGA-EW-A6S9 TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DC 
       15.22        31.30        33.21        59.57        79.10        83.34 
TCGA-GM-A2DD TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       75.02        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        43.73        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       18.12        62.47        11.84        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       13.28        10.62        24.95        29.23        25.05        17.06 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ 
       14.47        22.26         2.63        15.68        14.50        19.53 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       12.36        17.49        27.91        22.39         2.10        36.30 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        40.08        34.92        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N 
       22.32        26.70        23.47        65.62        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       17.36        14.07        19.73        40.11         8.91        47.01 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA11 
        0.26         9.93        18.81        18.48        20.68        13.84 
TCGA-S3-AA12 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G 
       18.87        17.26        13.94         3.81        66.84        11.41 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                       255.68                        282.90 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                       24.705                        28.870 
[1] "0.0 - 255.7 (24.7)" "0.0 - 282.9 (28.9)"
[1] "hr=" "1.3"
D35V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  6(4Q35.1) MUTATED        24       19        0        2       125
  DEL PEAK  6(4Q35.1) WILD-TYPE      65       66        6        4       228
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  6(4Q35.1) MUTATED          84         0         48          9
  DEL PEAK  6(4Q35.1) WILD-TYPE       168         2        106         20
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  6(4Q35.1) MUTATED           18        9         0       3
  DEL PEAK  6(4Q35.1) WILD-TYPE         47       11         1      10
D35V3, multiclass
            clus
vv           DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  STAGE I                             24                            65
  STAGE IA                            19                            66
  STAGE IB                             0                             6
  STAGE II                             2                             4
  STAGE IIA                          125                           228
  STAGE IIB                           84                           168
  STAGE III                            0                             2
  STAGE IIIA                          48                           106
  STAGE IIIB                           9                            20
  STAGE IIIC                          18                            47
  STAGE IV                             9                            11
  STAGE TIS                            0                             1
  STAGE X                              3                            10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  6(4Q35.1) MUTATED    66 223  38  16
  DEL PEAK  6(4Q35.1) WILD-TYPE 210 401  98  24
D35V4, multiclass
    clus
vv   DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  T1                          66                           210
  T2                         223                           401
  T3                          38                            98
  T4                          16                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  6(4Q35.1) MUTATED   163 114  41  21
  DEL PEAK  6(4Q35.1) WILD-TYPE 344 244  78  56
D35V5, multiclass
    clus
vv   DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  N0                         163                           344
  N1                         114                           244
  N2                          41                            78
  N3                          21                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V6, binary
                               cls
clus                              0   1
  DEL PEAK  6(4Q35.1) MUTATED   298   9
  DEL PEAK  6(4Q35.1) WILD-TYPE 591  13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) MUTATED    298    9
  DEL PEAK  6(4Q35.1) WILD-TYPE  591   13
   clus
vv  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  0                         298                           591
  1                           9                            13
[1] 2 2
[1] FALSE
D35V7, binary
                               cls
clus                              0   1
  DEL PEAK  6(4Q35.1) MUTATED   342   3
  DEL PEAK  6(4Q35.1) WILD-TYPE 726   9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) MUTATED    342    3
  DEL PEAK  6(4Q35.1) WILD-TYPE  726    9
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  FEMALE                         342                           726
  MALE                             3                             9
[1] 2 2
[1] FALSE
D35V8, binary
                               cls
clus                              0   1
  DEL PEAK  6(4Q35.1) MUTATED   131 165
  DEL PEAK  6(4Q35.1) WILD-TYPE 298 353
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) MUTATED    131  165
  DEL PEAK  6(4Q35.1) WILD-TYPE  298  353
     clus
vv    DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  NO                          131                           298
  YES                         165                           353
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  6(4Q35.1) MUTATED                            1
  DEL PEAK  6(4Q35.1) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  6(4Q35.1) MUTATED                             287
  DEL PEAK  6(4Q35.1) WILD-TYPE                           483
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  6(4Q35.1) MUTATED                               36
  DEL PEAK  6(4Q35.1) WILD-TYPE                            164
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  6(4Q35.1) MUTATED                     4                     4
  DEL PEAK  6(4Q35.1) WILD-TYPE                   2                     5
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  6(4Q35.1) MUTATED                                  4
  DEL PEAK  6(4Q35.1) WILD-TYPE                               25
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  6(4Q35.1) MUTATED                    0              8
  DEL PEAK  6(4Q35.1) WILD-TYPE                 17             39
D35V9, multiclass
                                  clus
vv                                 DEL PEAK  6(4Q35.1) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            287
  INFILTRATING LOBULAR CARCINOMA                            36
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      4
  MIXED HISTOLOGY (PLEASE SPECIFY)                           4
  MUCINOUS CARCINOMA                                         0
  OTHER  SPECIFY                                             8
                                  clus
vv                                 DEL PEAK  6(4Q35.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              483
  INFILTRATING LOBULAR CARCINOMA                             164
  MEDULLARY CARCINOMA                                          2
  METAPLASTIC CARCINOMA                                        5
  MIXED HISTOLOGY (PLEASE SPECIFY)                            25
  MUCINOUS CARCINOMA                                          17
  OTHER  SPECIFY                                              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  6(4Q35.1) MUTATED                                  1    23
  DEL PEAK  6(4Q35.1) WILD-TYPE                                0    37
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  6(4Q35.1) MUTATED                          73   218
  DEL PEAK  6(4Q35.1) WILD-TYPE                       108   527
D35V11, multiclass
                                  clus
vv                                 DEL PEAK  6(4Q35.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     23
  BLACK OR AFRICAN AMERICAN                                 73
  WHITE                                                    218
                                  clus
vv                                 DEL PEAK  6(4Q35.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       37
  BLACK OR AFRICAN AMERICAN                                  108
  WHITE                                                      527
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V12, binary
                               cls
clus                              0   1
  DEL PEAK  6(4Q35.1) MUTATED     7 280
  DEL PEAK  6(4Q35.1) WILD-TYPE  32 595
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) MUTATED      7  280
  DEL PEAK  6(4Q35.1) WILD-TYPE   32  595
                        clus
vv                       DEL PEAK  6(4Q35.1) MUTATED
  HISPANIC OR LATINO                               7
  NOT HISPANIC OR LATINO                         280
                        clus
vv                       DEL PEAK  6(4Q35.1) WILD-TYPE
  HISPANIC OR LATINO                                32
  NOT HISPANIC OR LATINO                           595
[1] 2 2
[1] FALSE

Clustering(36) Variable = DEL PEAK  7(5Q11.2) MUTATION ANALYSIS
D36V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  7(5Q11.2) MUTATED   231  45
  DEL PEAK  7(5Q11.2) WILD-TYPE 686 102
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          276                           788 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                           45                           102 
$`DEL PEAK  7(5Q11.2) MUTATED`
TCGA-4H-AAAK TCGA-5L-AAT1 TCGA-A1-A0SG TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A1-A0SP 
       11.44        48.36        14.27        31.79        28.01        19.20 
TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CM TCGA-A2-A0CX 
       18.02        73.84        87.25       101.98        24.79        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0EQ TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0SX 
       67.33        34.55        79.76        24.72        63.29        50.43 
TCGA-A2-A0T1 TCGA-A2-A0YE TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1G1 
       17.13        18.21        21.67        18.61        31.73        19.20 
TCGA-A2-A25E TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 
      105.34        33.93        91.07        47.31        35.93        50.83 
TCGA-A2-A4RW TCGA-A2-A4S3 TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26G 
        7.30        21.90        35.67        31.73        20.19        23.74 
TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       21.73        22.32        14.93        13.74        14.50        21.17 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06R TCGA-A8-A06X 
       14.73        12.10         9.37         8.75        17.98        31.00 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07G TCGA-A8-A07O TCGA-A8-A07U TCGA-A8-A084 
       17.03        53.98        18.97         9.99        24.99        15.06 
TCGA-A8-A08F TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A09A TCGA-A8-A09K 
       33.01         0.99       112.08        43.00         9.99        29.98 
TCGA-A8-A09M TCGA-A8-A09T TCGA-AC-A2BK TCGA-AC-A62X TCGA-AC-A8OQ TCGA-AN-A041 
       33.07        19.04        73.05        13.71         1.12         0.23 
TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FJ 
        1.71         7.36         7.46         0.33         0.33         7.96 
TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.59         7.04         0.33         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AO-A03M TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0JL 
        0.33        61.35        52.18        26.04        37.48        55.33 
TCGA-AO-A129 TCGA-AO-A12F TCGA-AO-A1KR TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A54N 
      108.03        48.36        70.39        26.93       130.09         2.56 
TCGA-AR-A0TP TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U0 TCGA-AR-A0U1 
      140.55       109.02        75.22        98.93        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AQ 
       83.87       107.21       125.16       108.36       101.00        99.32 
TCGA-AR-A1AR TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24S TCGA-AR-A24U 
       17.23        94.29        33.73        50.89        97.84        77.69 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A256 TCGA-AR-A2LR TCGA-B6-A0I1 
       98.66        89.00        99.62        93.83        57.27        77.62 
TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IJ TCGA-B6-A0IQ TCGA-B6-A0RP 
      129.57        65.72       146.50       233.62       140.88       102.77 
TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WX TCGA-B6-A0X1 TCGA-B6-A1KF 
      100.70       282.90        79.63        21.47       245.10       101.52 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A402 TCGA-B6-A409 TCGA-BH-A0AU TCGA-BH-A0AV 
       37.87         7.07        70.16        18.84        62.93        59.84 
TCGA-BH-A0B3 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP 
       39.55        84.13        51.68        61.51        74.89        75.48 
TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0HA 
       45.57        77.95        41.75         4.41         9.63        52.96 
TCGA-BH-A0HY TCGA-BH-A0WA TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1EU 
       50.79        23.05         7.36        51.16       113.82        42.28 
TCGA-BH-A1EV TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       12.00        25.81        31.53       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FM TCGA-BH-A1FU TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 
      122.89        45.63        72.07        38.60        57.83       130.16 
TCGA-BH-A5IZ TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12W TCGA-C8-A12X 
       18.64        11.93        11.77        12.66        12.66        12.66 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HJ 
        3.16        13.51        12.92         4.08        10.92         0.16 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HR 
       12.53        12.36         9.50        24.56        14.43        13.41 
TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A147 
       19.46        20.88        13.97        14.17        21.14        19.20 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JK TCGA-D8-A1JL 
       16.50        55.50        12.03        53.00        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1XA TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XK 
       19.40        21.01        27.58        15.22        21.80        14.50 
TCGA-D8-A1XL TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y3 
       19.92        16.41        16.64        43.04        15.32        14.14 
TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27R TCGA-E2-A14N TCGA-E2-A14R TCGA-E2-A150 
       16.04        13.05        10.09        47.15        38.60        63.62 
TCGA-E2-A155 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B6 
       21.04        14.79        25.05        76.57        53.62        28.50 
TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1LH TCGA-E2-A1LI 
       33.70        60.99        54.18        60.36       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1ND 
        8.75        34.92        38.76        34.16        39.55        41.62 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RH TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E 
       32.09        40.24        46.59        39.09        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A2JS TCGA-EW-A1J1 
       40.73        20.12         0.69        38.99        29.72        18.90 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PH 
       25.94        22.82        29.82         7.86        18.90        19.96 
TCGA-EW-A2FV TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-EW-A6SD TCGA-GI-A2C9 TCGA-GM-A2DD 
       25.91        15.22        24.99        33.21       109.87        75.02 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LL-A441 
       70.85        72.10        69.30         2.60        11.84        32.75 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A7SZ TCGA-LL-A7T0 
       15.32        14.70        14.79        16.08        19.53        12.36 
TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I 
       19.59        58.52        36.36        22.32        20.38        23.47 
TCGA-OL-A66J TCGA-OL-A6VO TCGA-PL-A8LX TCGA-PL-A8LZ TCGA-S3-AA10 TCGA-WT-AB41 
       65.62        28.21         0.16         9.93        19.27        52.96 

$`DEL PEAK  7(5Q11.2) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5T-A9QA 
      129.14       131.67        42.81        40.14        48.56         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI 
        8.52        14.37        43.43        48.10        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       13.68         7.96        39.32        18.21       143.15        78.41 
TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
      121.94        63.12        55.43        36.13       136.73        99.12 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      114.81        92.48        88.60       107.93        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
        5.19        98.99       107.93        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72        89.36        80.28       118.45        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0ST TCGA-A2-A0SU 
       35.05        34.29        31.82        61.94        99.19        54.64 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 
       27.12        44.88        44.28        17.52         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YT 
       50.47        21.90        49.48        19.33        48.46        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 
       23.47        17.36        60.72        22.45        20.25        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       16.47        52.47       107.70        42.44        17.19        18.15 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       10.59        36.23        39.65        29.98        32.75        56.28 
TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
       50.37        24.39        21.30        23.21        26.96        21.14 
TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       38.30        35.31        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E 
       33.11        29.79        25.15        23.61        29.56        31.36 
TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       24.26        23.80        20.61        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SF TCGA-A7-A5ZW 
       11.28        13.41        14.70        11.97        17.92        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       11.05        10.29        10.42        13.02        13.02         1.02 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07B 
       53.06        29.03        26.01         1.02         9.01        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P 
       19.99        18.97        14.01        12.00        32.05        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A086 
        8.98         7.99         9.99        45.07        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
        0.99        38.01        28.96        19.96        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08Z TCGA-A8-A091 
        9.99        31.00        31.00        33.01        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09B 
       30.97        17.95        41.98        12.00         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09Q 
        1.02        50.04        49.05        45.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
        8.98        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       13.02        21.04         0.99        27.02        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BM 
        0.95        22.95        73.91         5.72         1.48        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN 
       16.31        14.83        22.19        24.13        25.05        14.99 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE 
       16.57        19.79        15.48        23.24        24.79        29.26 
TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62Y 
       16.80        14.53        19.33        14.96        11.44        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC 
       18.67        13.58        12.26         1.68         8.22         0.03 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 
       20.19         1.32         2.30         0.33         0.33         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0AR 
        0.62         2.96         1.78         9.96         0.16         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW 
        6.44         5.65         7.00         7.17         6.90         0.36 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O 
        0.33         5.33         5.59        80.28        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        47.87        58.95        29.13        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       21.40        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI 
       50.86        72.00        76.77        65.10        26.24        50.24 
TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       62.04        71.80       115.27        99.25       108.72       106.78 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H 
       90.58        98.27        64.04        57.30        41.62        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H 
       14.73        82.62        61.87         0.53        17.79        24.79 
TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TQ 
        5.65        15.62        32.52        32.91        19.20        98.33 
TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U3 
        5.26        84.10        64.83        55.86       107.24       134.14 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      103.86        97.68        98.33        96.00        86.07        93.90 
TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24L 
       37.81        61.28        86.53        86.43       160.90        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A254 
      105.27       105.30        32.58        98.76        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL 
       71.05       166.42        20.25        86.53        54.21        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN 
       63.62        38.17        39.39        40.54        73.35        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA 
       38.96        10.59       143.38       281.29        12.13       275.87 
TCGA-B6-A0IC TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
       50.70       112.37        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      129.07       255.68        68.45       212.25       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV 
       78.02       263.28       162.05       140.48        89.46       157.41 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
       97.48       188.68        18.35       113.79       206.86       129.70 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A1KN 
       28.27        68.94        58.88        43.59        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AW 
      170.17        85.35        68.12       103.63        71.15        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 
       25.55        63.09        81.44        40.83        39.16        70.22 
TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ 
       81.63        37.22        32.02        18.21        43.53        21.70 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV 
       61.68        72.23        74.14        76.60        53.95        49.94 
TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       49.05        44.02        89.06        90.97        45.83        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       23.44        38.01        29.98        13.91        78.28        17.26 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        38.47        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       16.27        15.68        14.30        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        24.43        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HB 
       37.78        53.26        24.56        23.08        41.00        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
       20.38         5.85         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       51.32        27.25         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       44.81        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EW 
       66.05        51.39        67.50        91.99        82.85        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB 
       49.58        17.69        89.16        97.48        24.62       120.62 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A201 
       36.92        63.35        55.00        72.07       144.59        28.14 
TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       26.14        83.31        10.65         6.44        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
      109.28        20.88        23.51         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q 
       18.87        21.76         9.44        11.77        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A134 
       12.66        12.66        48.53        12.56         1.87        12.59 
TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL 
        4.11        12.33        11.34        11.28        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26Y TCGA-C8-A26Z 
       12.33        12.95        12.33        20.25        12.95         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.67         9.53         0.03        33.99        12.95        13.02 
TCGA-C8-A8HQ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A1J8 
       12.49        56.81        13.25        20.58        13.48        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH TCGA-D8-A1JI 
       17.49        15.78        18.15        18.90        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.09        20.38        12.20        13.32        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XB TCGA-D8-A1XC 
       17.79        16.73        25.74        23.90        18.15        12.39 
TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS 
       17.16        14.73        17.69        55.30        15.85        16.31 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       12.99        15.16        16.54        15.52         9.93        14.24 
TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       17.42        13.45        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        4.80         1.61        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       18.51        21.67        16.18        12.66        25.22        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S 
       28.44        28.87        44.68        40.96        38.24        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A15A 
       18.51        69.96        23.24        19.43        23.87        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O 
       55.63        53.92         9.04        20.58        11.05        50.79 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 
       19.56        56.94        14.07        51.39        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        16.47        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU 
       33.73        28.44        59.18         3.88        22.19        11.08 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG 
       73.64        19.66        24.59        75.81        28.90        50.07 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        26.99        34.55        43.56         8.28        30.61 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 
       34.29        17.69        34.82        32.88        36.82        22.29 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       36.20        36.56        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE 
        3.02        11.15        48.23        45.01         1.12        46.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
        6.58        21.27        47.64        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22H TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       37.74        38.37        40.50         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       12.33         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 
       27.85        12.20        39.72         8.48        18.21        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        15.68        28.77        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        52.96        23.11        18.48        30.08 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG 
       19.99         6.15        13.94        10.52        14.43        34.55 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       55.00        52.73        22.09        34.03        17.49        10.16 
TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA 
       23.51        16.77        31.30         7.40        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       79.10        83.34        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN 
      101.62        85.35       110.50        38.20        43.73        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U 
       72.03        13.55        18.12        62.47        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 
       13.22         7.10        13.28        10.62        24.95        29.23 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y 
       25.05        17.06        14.47        22.26         2.63        15.68 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
        7.46        14.50        17.49        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       36.30        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       24.72        26.70        41.92        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD 
       14.07        19.73        40.11         8.91        47.01        64.21 
TCGA-PE-A5DE TCGA-PL-A8LY TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z 
       86.96         0.26        18.81        18.48        21.07        20.68 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 
       13.84        18.87        17.39        17.26        13.94        17.03 
TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
        3.81        66.84        11.41        29.03        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                       282.90                        281.29 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                       29.110                        27.185 
[1] "0.2 - 282.9 (29.1)" "0.0 - 281.3 (27.2)"
[1] "hr=" "1.2"
D36V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  7(5Q11.2) MUTATED        24       14        0        1       103
  DEL PEAK  7(5Q11.2) WILD-TYPE      65       71        6        5       250
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  7(5Q11.2) MUTATED          70         0         36          7
  DEL PEAK  7(5Q11.2) WILD-TYPE       182         2        118         22
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  7(5Q11.2) MUTATED           12        7         1       2
  DEL PEAK  7(5Q11.2) WILD-TYPE         53       13         0      11
D36V3, multiclass
            clus
vv           DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  STAGE I                             24                            65
  STAGE IA                            14                            71
  STAGE IB                             0                             6
  STAGE II                             1                             5
  STAGE IIA                          103                           250
  STAGE IIB                           70                           182
  STAGE III                            0                             2
  STAGE IIIA                          36                           118
  STAGE IIIB                           7                            22
  STAGE IIIC                          12                            53
  STAGE IV                             7                            13
  STAGE TIS                            1                             0
  STAGE X                              2                            11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  7(5Q11.2) MUTATED    60 187  20  12
  DEL PEAK  7(5Q11.2) WILD-TYPE 216 437 116  28
D36V4, multiclass
    clus
vv   DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  T1                          60                           216
  T2                         187                           437
  T3                          20                           116
  T4                          12                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  7(5Q11.2) MUTATED   136  94  33  13
  DEL PEAK  7(5Q11.2) WILD-TYPE 371 264  86  64
D36V5, multiclass
    clus
vv   DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  N0                         136                           371
  N1                          94                           264
  N2                          33                            86
  N3                          13                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V6, binary
                               cls
clus                              0   1
  DEL PEAK  7(5Q11.2) MUTATED   242   8
  DEL PEAK  7(5Q11.2) WILD-TYPE 647  14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q11.2) MUTATED    242    8
  DEL PEAK  7(5Q11.2) WILD-TYPE  647   14
   clus
vv  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  0                         242                           647
  1                           8                            14
[1] 2 2
[1] FALSE
D36V7, binary
                               cls
clus                              0   1
  DEL PEAK  7(5Q11.2) MUTATED   280   0
  DEL PEAK  7(5Q11.2) WILD-TYPE 788  12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q11.2) MUTATED    280    0
  DEL PEAK  7(5Q11.2) WILD-TYPE  788   12
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  FEMALE                         280                           788
  MALE                             0                            12
[1] 2 2
[1] FALSE
D36V8, binary
                               cls
clus                              0   1
  DEL PEAK  7(5Q11.2) MUTATED   116 131
  DEL PEAK  7(5Q11.2) WILD-TYPE 313 387
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q11.2) MUTATED    116  131
  DEL PEAK  7(5Q11.2) WILD-TYPE  313  387
     clus
vv    DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  NO                          116                           313
  YES                         131                           387
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  7(5Q11.2) MUTATED                            1
  DEL PEAK  7(5Q11.2) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  7(5Q11.2) MUTATED                             244
  DEL PEAK  7(5Q11.2) WILD-TYPE                           526
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  7(5Q11.2) MUTATED                               12
  DEL PEAK  7(5Q11.2) WILD-TYPE                            188
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  7(5Q11.2) MUTATED                     5                     1
  DEL PEAK  7(5Q11.2) WILD-TYPE                   1                     8
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  7(5Q11.2) MUTATED                                  6
  DEL PEAK  7(5Q11.2) WILD-TYPE                               23
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  7(5Q11.2) MUTATED                    1              9
  DEL PEAK  7(5Q11.2) WILD-TYPE                 16             38
D36V9, multiclass
                                  clus
vv                                 DEL PEAK  7(5Q11.2) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            244
  INFILTRATING LOBULAR CARCINOMA                            12
  MEDULLARY CARCINOMA                                        5
  METAPLASTIC CARCINOMA                                      1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           6
  MUCINOUS CARCINOMA                                         1
  OTHER  SPECIFY                                             9
                                  clus
vv                                 DEL PEAK  7(5Q11.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              526
  INFILTRATING LOBULAR CARCINOMA                             188
  MEDULLARY CARCINOMA                                          1
  METAPLASTIC CARCINOMA                                        8
  MIXED HISTOLOGY (PLEASE SPECIFY)                            23
  MUCINOUS CARCINOMA                                          16
  OTHER  SPECIFY                                              38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  7(5Q11.2) MUTATED                                  1    20
  DEL PEAK  7(5Q11.2) WILD-TYPE                                0    40
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  7(5Q11.2) MUTATED                          68   170
  DEL PEAK  7(5Q11.2) WILD-TYPE                       113   575
D36V11, multiclass
                                  clus
vv                                 DEL PEAK  7(5Q11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     20
  BLACK OR AFRICAN AMERICAN                                 68
  WHITE                                                    170
                                  clus
vv                                 DEL PEAK  7(5Q11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       40
  BLACK OR AFRICAN AMERICAN                                  113
  WHITE                                                      575
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V12, binary
                               cls
clus                              0   1
  DEL PEAK  7(5Q11.2) MUTATED    10 233
  DEL PEAK  7(5Q11.2) WILD-TYPE  29 642
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q11.2) MUTATED     10  233
  DEL PEAK  7(5Q11.2) WILD-TYPE   29  642
                        clus
vv                       DEL PEAK  7(5Q11.2) MUTATED
  HISPANIC OR LATINO                              10
  NOT HISPANIC OR LATINO                         233
                        clus
vv                       DEL PEAK  7(5Q11.2) WILD-TYPE
  HISPANIC OR LATINO                                29
  NOT HISPANIC OR LATINO                           642
[1] 2 2
[1] FALSE

Clustering(37) Variable = DEL PEAK  8(5Q21.3) MUTATION ANALYSIS
D37V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  8(5Q21.3) MUTATED   228  40
  DEL PEAK  8(5Q21.3) WILD-TYPE 689 107
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          268                           796 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                           40                           107 
$`DEL PEAK  8(5Q21.3) MUTATED`
TCGA-3C-AALI TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04P TCGA-A2-A04Q 
      131.67        31.79        28.01        19.20        18.02        78.41 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CM TCGA-A2-A0CX TCGA-A2-A0D0 
       73.84        87.25       101.98        24.79        56.81        67.33 
TCGA-A2-A0D1 TCGA-A2-A0EQ TCGA-A2-A0EY TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0YE 
       34.55        79.76        63.29        50.43        17.52        18.21 
TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XT 
       21.67        18.61        31.73        19.20        33.93        91.07 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S3 TCGA-A7-A0CJ 
       47.31        35.93        50.83         7.30        21.90        30.61 
TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A2KD 
       35.67        31.73        20.19        23.74        21.73        22.32 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW 
       14.50        21.17        14.73        12.10        10.29         9.37 
TCGA-A7-A6VY TCGA-A8-A06X TCGA-A8-A076 TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07U 
        8.75        31.00        53.98         9.99         8.98        24.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08L TCGA-A8-A08R TCGA-A8-A08X TCGA-A8-A09A 
       15.06        33.01         9.99         0.99        43.00         9.99 
TCGA-A8-A09C TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-AC-A2BK TCGA-AC-A3OD 
        1.02        29.98        33.07        25.02        73.05        14.83 
TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A8OQ TCGA-AN-A041 TCGA-AN-A04C 
       14.96        13.71        13.58         1.12         0.23         1.78 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FJ 
        7.36         7.46         0.33         0.33         0.33         7.96 
TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.59         7.04         0.33         0.33         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XU TCGA-AO-A03M TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
        0.33         0.33        61.35        52.18        26.04        37.48 
TCGA-AO-A0JB TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12F TCGA-AO-A1KR 
       50.70        55.33       115.27       108.03        48.36        70.39 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TT TCGA-AR-A0TV 
       26.93       130.09         2.56       140.55       109.02        75.22 
TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U4 
       98.93        55.86        65.36       133.22        83.87       107.21 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AN TCGA-AR-A1AQ TCGA-AR-A1AR 
      125.16       108.36       101.00        96.00        99.32        17.23 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24U 
       33.73        50.89        94.22       104.28        97.84        77.69 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A256 TCGA-B6-A0IB TCGA-B6-A0IE 
       98.66        89.00        99.62        93.83       129.57        65.72 
TCGA-B6-A0IG TCGA-B6-A0IO TCGA-B6-A0RE TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0RU 
      146.50       165.76       255.68       102.77       100.70       282.90 
TCGA-B6-A0WX TCGA-B6-A1KF TCGA-B6-A3ZX TCGA-B6-A402 TCGA-B6-A409 TCGA-BH-A0AU 
       21.47       101.52        37.87        70.16        18.84        62.93 
TCGA-BH-A0AV TCGA-BH-A0B3 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0BG 
       59.84        39.55        84.13        51.68        43.53        61.51 
TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0E0 
       74.89        75.48        45.57        77.95        41.75         4.41 
TCGA-BH-A0E6 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HY TCGA-BH-A0WA TCGA-BH-A18T 
        9.63        52.96        20.38        50.79        23.05         7.36 
TCGA-BH-A18V TCGA-BH-A1EV TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1FC 
       51.16        12.00        25.81        31.53        97.48       114.15 
TCGA-BH-A1FE TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A5IZ 
       74.73        72.07        72.07        57.83       130.16        18.64 
TCGA-C8-A12L TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A1HF 
       11.93         3.16        13.51        12.59        12.92        10.92 
TCGA-C8-A1HJ TCGA-C8-A1HM TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A278 
        0.16        12.33        12.53        12.36        12.95         9.50 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A142 TCGA-D8-A146 
       24.56        14.43        13.41        19.46        13.97        21.14 
TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JK TCGA-D8-A1JL 
       19.20        55.50        12.03        53.00        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XF TCGA-D8-A1XK TCGA-D8-A1XL 
       19.40        23.90        27.58        15.22        14.50        19.92 
TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XW TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27H 
       16.41        16.64        43.04        14.14        16.04        13.05 
TCGA-D8-A27M TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14R TCGA-E2-A150 TCGA-E2-A155 
       13.48        40.11        47.15        38.60        63.62        21.04 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1II 
       14.79        25.05        23.34        76.57        53.62        33.70 
TCGA-E2-A1IO TCGA-E2-A1LA TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       60.99        24.59       106.75       102.61         8.75        43.04 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1RB 
       34.92        38.76        34.16        39.55        41.62        32.09 
TCGA-E9-A1RC TCGA-E9-A1RH TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       40.24        46.59        39.09        41.03        41.72        40.73 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A3QA TCGA-E9-A5FL TCGA-EW-A1OV TCGA-EW-A1OW 
        0.69        38.99        30.18         0.79        25.94        22.82 
TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A6S9 
       29.82         7.86        18.90        19.96        25.91        15.22 
TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SD TCGA-GI-A2C9 TCGA-GM-A2DD TCGA-GM-A2DF 
       16.77        24.99        33.21       109.87        75.02        70.85 
TCGA-GM-A2DH TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LL-A441 TCGA-LL-A5YM 
       72.10        69.30         2.60        11.84        32.75        15.32 
TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-OL-A5D7 
       14.70        14.79        16.08        12.36        19.59        58.52 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A6VO TCGA-PL-A8LX 
       22.32        20.38        23.47        65.62        28.21         0.16 
TCGA-PL-A8LZ TCGA-S3-AA10 TCGA-S3-AA17 TCGA-WT-AB41 
        9.93        19.27        13.94        52.96 

$`DEL PEAK  8(5Q21.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ 
       47.24        20.88        13.68         7.96        39.32        18.21 
TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
      143.15       121.94        63.12        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12       114.81        92.48        88.60       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D2 TCGA-A2-A0D3 
       75.25         5.19        98.99       107.93        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER 
       25.22       101.72        89.36        80.28       118.45        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T1 
       99.19        54.64        27.12        44.88        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
        8.38        49.84        20.52        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YK 
       32.55        25.28        50.47        21.90        49.48        19.33 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       48.46        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       20.25        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY 
       29.98        32.75        56.28        50.37        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        38.30        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A13G 
       35.47        37.45        33.11        29.79        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY 
       29.56        31.36        24.26        23.80        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       10.59        10.29        11.28        13.41        14.70        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VX 
       14.93        13.74        17.92        10.72        11.05        10.42 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U 
       13.02        13.02         1.02        17.98        53.06        29.03 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E 
       26.01         1.02        17.03         9.01        43.00        19.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P 
       18.97        18.97        14.01        12.00        32.05        10.98 
TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        7.99         9.99        45.07        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O 
       38.01        28.96        19.96        12.00        37.05        31.00 
TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       31.00        33.01       112.08        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09D 
       17.95        41.98        12.00         9.99        12.00        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       49.05        45.07         1.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04         0.95        22.95 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
       73.91         5.72         1.48        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3QP 
       19.33        14.66        32.45         6.48        16.31        22.19 
TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 
       24.13        25.05        14.99        16.57        19.79        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS 
       23.24        24.79        29.26        16.80        14.53        19.33 
TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       11.44        17.42        18.67        12.26         1.68         8.22 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
        0.03        20.19         1.32         2.30         0.33         0.33 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AM 
        0.33         0.62         2.96         1.71         9.96         0.16 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW 
        6.44         5.65         7.00         7.17         6.90         0.36 
TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        5.36        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.33         5.59        80.28        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        47.87        58.95        29.13        32.78        21.40 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JD 
       20.32        22.36        53.03        21.53        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM 
       76.77        65.10        26.24        50.24        62.04        71.80 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
       99.25       108.72       106.78        90.58        98.27        64.04 
TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ 
       57.30        41.62        40.57        14.73        82.62        61.87 
TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 
        0.53        17.79        24.79         5.65        15.62        32.52 
TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TX 
       32.91        19.20        98.33         5.26        84.10        64.83 
TCGA-AR-A0TZ TCGA-AR-A0U3 TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO 
      107.24       134.14       103.86        97.68        98.33        86.07 
TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       93.90        37.81        94.29        61.28        86.53        86.43 
TCGA-AR-A24H TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R 
      160.90       120.33        99.78       118.59         2.76       112.77 
TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A254 
      105.27       105.30        32.58        98.76        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL 
       71.05       166.42        20.25        86.53        54.21        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM 
       63.62        38.17        39.39        40.54        57.27        73.35 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       12.13       275.87        50.70       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH 
      127.33        84.59       129.07       140.88        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ 
      234.28        81.17        78.02       263.28       162.05       140.48 
TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
       89.46       157.41        97.48       188.68        79.63        18.35 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A400 
       58.88        43.59        73.51       139.17       170.17         7.07 
TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AY 
       85.35        68.12       103.63        71.15        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 
       63.09        81.44        40.83        39.16        70.22        81.63 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       37.22        32.02        18.21        21.70        61.68        72.23 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C1 
       74.14        76.60        53.95        49.94        49.05        44.02 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        45.83        77.98        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ 
       29.98        13.91        78.28        17.26        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 
        2.56        38.47        67.86        70.88        16.27        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30        44.81        46.19        32.58        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.43        30.35        10.78        15.16        37.78        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HO 
       24.56        23.08        41.00        26.50         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX 
       13.61        36.85        12.89        51.32        27.25         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G 
       23.93        24.95        42.35        44.81        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN 
       30.28        55.63        37.55        66.05        51.39        67.50 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX 
       91.99       113.82        82.85        42.28        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FG 
       17.69        89.16        24.62       120.62        33.17       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A201 
       36.92        63.35        55.00        45.63       144.59        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       26.14        38.60        83.31        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 
       10.52       109.28        20.88        23.51         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N 
        9.70        18.87        21.76         9.44        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A137 TCGA-C8-A138 
       12.66        48.53        12.56         1.87         4.11         4.08 
TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HN 
       12.33        11.34        11.28        12.03        10.42        12.95 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.33        20.25         8.28         9.67         9.53         0.03 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-D8-A13Y TCGA-D8-A13Z 
       33.99        12.95        13.02        12.49        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.25        20.58        14.17        13.48        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH TCGA-D8-A1JI 
       16.50        15.78        18.15        18.90        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC 
       18.58        17.79        16.73        25.74        18.15        12.39 
TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR 
       17.16        14.73        21.80        17.69        55.30        15.85 
TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       16.31        12.99        15.16        16.54        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K 
        9.93        14.24        17.42        13.45        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       16.41         4.80         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.26        33.37        18.51        21.67        16.18        12.66 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       25.22        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       37.51        28.44        28.87        44.68        40.96        38.24 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        75.98        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 
       69.34        18.51        69.96        23.24        19.43        23.87 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O 
       55.63        53.92         9.04        20.58        11.05        50.79 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 
       19.56        56.94        14.07        51.39        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       32.35        28.50        16.47        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       70.36        33.73        28.44        59.18         3.88        22.19 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LB 
       11.08        54.18        60.36        73.64        19.66        75.81 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
       28.90        50.07        26.99        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       30.61        34.29        17.69        34.82        32.88        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       22.29        36.20        36.56        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD 
        6.12         3.02        11.15        48.23        45.01         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
       46.65         6.58        21.27        47.64        34.45        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A248 
       42.25        37.74        38.37        40.50        20.12         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO 
       32.91        30.44        23.90        23.84        26.70        25.81 
TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       26.40        27.85        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX 
       18.90        13.25        16.57        15.68        28.77        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 
       29.85        40.41        41.13        39.78        52.96        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
       18.48        30.08        19.99         6.15        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 
       14.43        34.55        55.00        52.73        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GM-A2D9 
       17.49        10.16        23.51        31.30         7.40        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
      216.76        79.10        83.34        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YX 
       66.38        72.03        13.55        18.12        62.47        11.57 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       21.24        13.22         7.10        13.28        10.62        24.95 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ 
       29.23        25.05        17.06        14.47        22.26         2.63 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       15.68         7.46        14.50        19.53        17.49        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
       22.39         2.10        36.30        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66K 
       34.92        36.36        28.87        24.72        26.70        41.92 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        26.04        17.36        14.07        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-S3-A6ZF 
        8.91        47.01        64.21        86.96         0.26        18.81 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       18.48        21.07        20.68        13.84        18.87        17.39 
TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB44 
       17.26        17.03         3.81        66.84        11.41        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                       282.90                        281.29 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                       29.900                        27.185 
[1] "0.2 - 282.9 (29.9)" "0.0 - 281.3 (27.2)"
[1] "hr=" "1"  
D37V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  8(5Q21.3) MUTATED        20       16        0        2       108
  DEL PEAK  8(5Q21.3) WILD-TYPE      69       69        6        4       245
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  8(5Q21.3) MUTATED          67         0         29          7
  DEL PEAK  8(5Q21.3) WILD-TYPE       185         2        125         22
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  8(5Q21.3) MUTATED           12        5         1       3
  DEL PEAK  8(5Q21.3) WILD-TYPE         53       15         0      10
D37V3, multiclass
            clus
vv           DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  STAGE I                             20                            69
  STAGE IA                            16                            69
  STAGE IB                             0                             6
  STAGE II                             2                             4
  STAGE IIA                          108                           245
  STAGE IIB                           67                           185
  STAGE III                            0                             2
  STAGE IIIA                          29                           125
  STAGE IIIB                           7                            22
  STAGE IIIC                          12                            53
  STAGE IV                             5                            15
  STAGE TIS                            1                             0
  STAGE X                              3                            10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  8(5Q21.3) MUTATED    54 184  20  12
  DEL PEAK  8(5Q21.3) WILD-TYPE 222 440 116  28
D37V4, multiclass
    clus
vv   DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  T1                          54                           222
  T2                         184                           440
  T3                          20                           116
  T4                          12                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  8(5Q21.3) MUTATED   144  84  29  13
  DEL PEAK  8(5Q21.3) WILD-TYPE 363 274  90  64
D37V5, multiclass
    clus
vv   DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  N0                         144                           363
  N1                          84                           274
  N2                          29                            90
  N3                          13                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V6, binary
                               cls
clus                              0   1
  DEL PEAK  8(5Q21.3) MUTATED   234   5
  DEL PEAK  8(5Q21.3) WILD-TYPE 655  17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q21.3) MUTATED    234    5
  DEL PEAK  8(5Q21.3) WILD-TYPE  655   17
   clus
vv  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  0                         234                           655
  1                           5                            17
[1] 2 2
[1] FALSE
D37V7, binary
                               cls
clus                              0   1
  DEL PEAK  8(5Q21.3) MUTATED   271   1
  DEL PEAK  8(5Q21.3) WILD-TYPE 797  11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q21.3) MUTATED    271    1
  DEL PEAK  8(5Q21.3) WILD-TYPE  797   11
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  FEMALE                         271                           797
  MALE                             1                            11
[1] 2 2
[1] FALSE
D37V8, binary
                               cls
clus                              0   1
  DEL PEAK  8(5Q21.3) MUTATED   114 127
  DEL PEAK  8(5Q21.3) WILD-TYPE 315 391
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q21.3) MUTATED    114  127
  DEL PEAK  8(5Q21.3) WILD-TYPE  315  391
     clus
vv    DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  NO                          114                           315
  YES                         127                           391
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  8(5Q21.3) MUTATED                            1
  DEL PEAK  8(5Q21.3) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  8(5Q21.3) MUTATED                             243
  DEL PEAK  8(5Q21.3) WILD-TYPE                           527
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  8(5Q21.3) MUTATED                                6
  DEL PEAK  8(5Q21.3) WILD-TYPE                            194
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  8(5Q21.3) MUTATED                     6                     1
  DEL PEAK  8(5Q21.3) WILD-TYPE                   0                     8
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  8(5Q21.3) MUTATED                                  6
  DEL PEAK  8(5Q21.3) WILD-TYPE                               23
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  8(5Q21.3) MUTATED                    0              8
  DEL PEAK  8(5Q21.3) WILD-TYPE                 17             39
D37V9, multiclass
                                  clus
vv                                 DEL PEAK  8(5Q21.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            243
  INFILTRATING LOBULAR CARCINOMA                             6
  MEDULLARY CARCINOMA                                        6
  METAPLASTIC CARCINOMA                                      1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           6
  MUCINOUS CARCINOMA                                         0
  OTHER  SPECIFY                                             8
                                  clus
vv                                 DEL PEAK  8(5Q21.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              527
  INFILTRATING LOBULAR CARCINOMA                             194
  MEDULLARY CARCINOMA                                          0
  METAPLASTIC CARCINOMA                                        8
  MIXED HISTOLOGY (PLEASE SPECIFY)                            23
  MUCINOUS CARCINOMA                                          17
  OTHER  SPECIFY                                              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  8(5Q21.3) MUTATED                                  0    18
  DEL PEAK  8(5Q21.3) WILD-TYPE                                1    42
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  8(5Q21.3) MUTATED                          70   163
  DEL PEAK  8(5Q21.3) WILD-TYPE                       111   582
D37V11, multiclass
                                  clus
vv                                 DEL PEAK  8(5Q21.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     18
  BLACK OR AFRICAN AMERICAN                                 70
  WHITE                                                    163
                                  clus
vv                                 DEL PEAK  8(5Q21.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       42
  BLACK OR AFRICAN AMERICAN                                  111
  WHITE                                                      582
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V12, binary
                               cls
clus                              0   1
  DEL PEAK  8(5Q21.3) MUTATED     9 225
  DEL PEAK  8(5Q21.3) WILD-TYPE  30 650
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q21.3) MUTATED      9  225
  DEL PEAK  8(5Q21.3) WILD-TYPE   30  650
                        clus
vv                       DEL PEAK  8(5Q21.3) MUTATED
  HISPANIC OR LATINO                               9
  NOT HISPANIC OR LATINO                         225
                        clus
vv                       DEL PEAK  8(5Q21.3) WILD-TYPE
  HISPANIC OR LATINO                                30
  NOT HISPANIC OR LATINO                           650
[1] 2 2
[1] FALSE

Clustering(38) Variable = DEL PEAK  9(6P25.3) MUTATION ANALYSIS
D38V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  9(6P25.3) MUTATED   171  30
  DEL PEAK  9(6P25.3) WILD-TYPE 746 117
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          201                           863 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                           30                           117 
$`DEL PEAK  9(6P25.3) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-A1-A0SG TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SP 
      131.67        42.81        14.27        13.68        31.79        19.20 
TCGA-A2-A04W TCGA-A2-A0CQ TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
      101.98        88.60        77.19        75.25         5.19        98.99 
TCGA-A2-A0D0 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0T3 
       67.33        25.22        80.28        27.12        17.52        49.84 
TCGA-A2-A0T4 TCGA-A2-A25E TCGA-A2-A3XS TCGA-A2-A3XW TCGA-A2-A4RW TCGA-A2-A4RY 
       20.52       105.34        33.93        56.28         7.30        21.30 
TCGA-A7-A0DA TCGA-A7-A2KD TCGA-A7-A4SE TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A8-A06O 
       35.67        22.32        21.17        12.10        10.29        13.02 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07J TCGA-A8-A08G TCGA-A8-A08X 
       26.01         1.02         9.01        12.00        19.96        43.00 
TCGA-A8-A097 TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A0A6 
       12.00        29.98        33.07         8.98        19.04        21.04 
TCGA-A8-A0A9 TCGA-AC-A23C TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A2QI TCGA-AC-A3BB 
       27.02         0.95        99.35        26.04        19.33        32.45 
TCGA-AC-A5EH TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A8OP 
       16.80        19.33        11.44        17.42        13.58        20.19 
TCGA-AN-A04A TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03L 
        2.96         0.33         0.33         0.33         5.59        80.28 
TCGA-AO-A03T TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JD TCGA-AO-A0JG 
       47.87        37.48        20.32        22.36        72.00        26.24 
TCGA-AO-A0JJ TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A54O 
       62.04        70.39        17.79        15.62         2.56        32.91 
TCGA-AR-A0TQ TCGA-AR-A0U1 TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AU TCGA-AR-A24H 
       98.33       133.22        93.90        99.32        94.29       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24V TCGA-AR-A24Z 
       50.89        94.22         2.76       112.77       105.30        98.66 
TCGA-AR-A252 TCGA-AR-A256 TCGA-B6-A0I1 TCGA-B6-A0IA TCGA-B6-A0RN TCGA-B6-A0RO 
       93.30        93.83        77.62       275.87       263.28       162.05 
TCGA-B6-A0WV TCGA-B6-A0X1 TCGA-B6-A401 TCGA-BH-A0AU TCGA-BH-A0B0 TCGA-BH-A0B4 
       79.63       245.10        85.35        62.93        81.44        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0C3 TCGA-BH-A0DL TCGA-BH-A0DP 
       70.22        51.68        43.53        89.06        78.28        15.65 
TCGA-BH-A0E2 TCGA-BH-A0HB TCGA-BH-A0W3 TCGA-BH-A0W7 TCGA-BH-A18T TCGA-BH-A18U 
       14.30        26.50        23.93        44.81         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EY TCGA-BH-A1F5 TCGA-BH-A1FM 
       51.16       113.82        42.28        17.69        89.16        45.63 
TCGA-BH-A1FN TCGA-BH-A208 TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-C8-A12O 
       72.07        57.83        18.64        23.51        18.87        12.66 
TCGA-C8-A1HG TCGA-C8-A1HK TCGA-C8-A26X TCGA-C8-A274 TCGA-C8-A27A TCGA-C8-A27B 
       11.34        12.03        12.36         9.53        24.56        14.43 
TCGA-C8-A3M8 TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1JC 
       12.95        13.41        56.81        13.48        19.20        15.78 
TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1XA 
       18.90        53.00        20.09        19.40        21.01        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XU TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A27H 
       18.15        12.39        12.99        15.52         9.93        13.05 
TCGA-D8-A27M TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A14R 
       13.48        12.66        34.42        46.59        40.11        38.60 
TCGA-E2-A14W TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A15D 
       32.02        63.62        69.96        23.24        21.04        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A1AZ TCGA-E2-A1BD TCGA-E2-A1IG 
       20.71        21.63        12.92        76.57        37.25        70.36 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       60.36        73.64        22.29        36.56        39.55        41.62 
TCGA-E9-A1NF TCGA-E9-A1QZ TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RG 
       35.24        24.82        11.15        45.01        32.09        21.27 
TCGA-E9-A22E TCGA-E9-A249 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5UO TCGA-E9-A5UP 
       41.72         7.13        30.18        30.44        25.81        26.40 
TCGA-EW-A1J1 TCGA-EW-A1OY TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A6SD TCGA-GI-A2C8 
       18.90        29.85        29.82        23.11        33.21         7.40 
TCGA-GI-A2C9 TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A3XL TCGA-JL-A3YW TCGA-LL-A6FR 
      109.87        83.34        72.10        69.30        11.84        16.08 
TCGA-LL-A740 TCGA-LL-A8F5 TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5DA TCGA-OL-A6VR 
       14.50        19.59        22.39        36.30        58.62        40.11 
TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-S3-AA17 
       18.48        19.27        13.94 

$`DEL PEAK  9(6P25.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      129.14        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI 
        8.52        14.37        43.43        48.10        47.24        20.88 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
        7.96        39.32        28.01        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04X 
       78.41       121.94        73.84        87.25        63.12        55.43 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       36.13       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
      107.93       107.93        56.81        34.55        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72        89.36       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       99.19        54.64        44.88        50.43        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
        8.38        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 
       60.72        22.45        20.25        19.20        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F 
       52.47       107.70        42.44        17.19        18.15        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XX 
       36.23        39.65        91.07        29.98        32.75        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S0 TCGA-A2-A4S1 
       35.93        50.37        50.83        24.39        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       21.14        21.90        38.30        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       30.61        37.45        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       25.15        23.61        29.56        31.36        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       23.80        21.73        20.61        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB 
       11.28        13.41        14.70        11.97        14.93        13.74 
TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW 
       14.50        17.92        14.73        10.72        11.05         9.37 
TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
       10.42         8.75        13.02         1.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E 
       29.03        31.00        17.03        53.98        43.00        19.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        18.97        14.01        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 
        8.98         7.99        24.99         9.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F 
       36.95        13.02         0.99        38.01        28.96        33.01 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
       33.01       112.08        40.01        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D 
       41.98         9.99         9.99        12.00         1.02        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W 
       49.05        45.07         1.02        25.02        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0AB 
       14.01        12.00        19.04        13.02         0.99        17.03 
TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04        22.95        73.91         5.72         1.48        73.05 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO 
       40.57        86.66        90.71        60.92        87.12        74.14 
TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       33.04        14.66         6.48        16.31        14.83        22.19 
TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 
       24.13        25.05        14.99        16.57        19.79        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EI TCGA-AC-A5XU TCGA-AC-A62X 
       23.24        24.79        29.26        14.53        14.96        13.71 
TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ 
       18.67        12.26         1.68         8.22         0.03         1.12 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
        1.32         2.30         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        0.62         1.78         1.71         9.96         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.36         0.33         0.33         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03M 
        0.30         0.33         0.33         0.33         5.33        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A03V 
       66.77        81.63        95.70        68.75        58.95        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J9 TCGA-AO-A0JA 
       32.78        21.40        52.18        26.04        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JL 
       50.70        50.86        76.77        65.10        50.24        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27        99.25       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
       90.58        98.27        64.04        57.30        48.36        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        14.73        82.62        61.87         0.53        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TP 
       26.93       130.09         5.65        32.52        19.20       140.55 
TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX 
        5.26        84.10       109.02        75.22        98.93        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 
       55.86       107.24        65.36        83.87       134.14       107.21 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      125.16       108.36       101.00       103.86        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW 
       96.00        86.07        17.23        37.81        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24Q 
       86.43        33.73       120.33        99.78       118.59       104.28 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 
       97.84       105.27        77.69        32.58        98.76        89.00 
TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       99.62        85.64        71.05       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       54.21        66.15        63.62        38.17        39.39        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I2 
       57.27        73.35        33.30        38.96        10.59       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
      281.29        12.13       129.57        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT 
       81.17        78.02       102.77       140.48       100.70        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX 
      282.90       157.41        97.48       188.68        18.35        21.47 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      113.79       206.86       129.70        28.27        68.94        58.88 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
        7.07        70.16        68.12        18.84       103.63        71.15 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B2 TCGA-BH-A0B3 
       59.84        20.45        25.55        63.09        40.83        39.55 
TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG 
       81.63        84.13        37.22        32.02        18.21        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        53.95        45.57        49.94        77.95        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       41.75        44.02        90.97        45.83        77.98        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DS 
       38.01        29.98        13.91        17.26         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       38.47        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE 
        9.63        44.81        46.19        32.58        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       24.43        30.35        10.78        15.16        37.78        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK 
       24.56        23.08        41.00        52.96        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0WA TCGA-BH-A18F 
       50.79         5.59        24.95        42.35        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1EN 
       37.74        30.28        55.63        37.55        66.05        67.50 
TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 
       91.99        82.85        12.00        55.69        49.58        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       31.53        97.48        24.62       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR 
       74.73       122.89        36.92        63.35        55.00       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 
       72.07        28.14        26.14        38.60        83.31       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28        20.88 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L 
        9.63         5.26         9.70        21.76         9.44        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        11.77        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56         3.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
        1.87        12.59        12.92         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN 
       10.92        11.28         0.16        10.42        12.33        12.95 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       12.33        20.25        12.53        12.95         8.28         9.67 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ 
        0.03         9.50        33.99        13.02        12.49        19.46 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 
       20.88        13.25        20.58        13.97        14.17        21.14 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JF 
       14.17        17.49        16.50        55.50        18.15        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JS 
       14.01        18.97        20.12        20.09        20.38        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK 
       23.90        17.16        15.22        14.73        21.80        14.50 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        55.30        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y2 
       16.64        15.16        43.04        16.54        15.32        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K 
       14.14        17.42        16.04        13.45        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       16.41         4.80         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73X 
       12.26        33.37        18.51        21.67        16.18        25.22 
TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F 
       43.00        27.52        40.41        37.51        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T 
       47.15        44.68        40.96        38.24        33.17        75.98 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A154 
       43.33        34.26        31.96        69.34        18.51        19.43 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15G 
       23.87        14.79        25.05        23.34        22.82        18.21 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O 
       55.63        53.92         9.04        20.58        11.05        50.79 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 
       19.56        56.94        14.07        51.39        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        16.47        77.65        37.41 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       60.99        11.08        54.18        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       28.90        50.07       106.75       102.61         8.75        43.04 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       26.99        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       38.76        34.29        17.69        34.82        32.88        36.82 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       34.16        36.20        35.77        25.84        18.94         9.86 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 
       28.27        34.95         2.56         6.12         3.02        48.23 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI 
       40.24         1.12        46.65         6.58        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.03        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        1.94        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A6HE 
       32.91        23.90        23.84        26.70         0.79        27.85 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 
       12.20        39.72         8.48        18.21        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ 
       15.68        28.77        25.94        22.82        29.95        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       41.13        39.78        52.96        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF 
       18.90        19.99         6.15        13.94        10.52        14.43 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA 
       34.03        17.49        10.16        23.51        15.22        16.77 
TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DD 
       24.99        31.30        59.57       216.76        79.10        75.02 
TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       70.85        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 
       85.35       110.50        38.20        43.73        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U 
       13.55        18.12         2.60        62.47        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 
       13.22         7.10        13.28        10.62        24.95        32.75 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       29.23        25.05        17.06        15.32        14.70        14.47 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7SZ 
       14.79        22.26         2.63        15.68         7.46        19.53 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 
       12.36        17.49        27.91         2.10        58.52        31.99 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       40.08        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       20.38        26.70        23.47        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A97C 
       26.04        17.36        14.07        28.21        19.73         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       47.01        64.21        86.96         0.16         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       18.81        21.07        20.68        13.84        18.87        17.39 
TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 
       17.26        17.03         3.81        66.84        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35        16.04       108.07       107.05 

  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                         0.33                          0.03 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                       275.87                        282.90 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                        26.50                         28.21 
[1] "0.3 - 275.9 (26.5)" "0.0 - 282.9 (28.2)"
[1] "hr=" "1"  
D38V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK  9(6P25.3) MUTATED        11       17        1        0        76
  DEL PEAK  9(6P25.3) WILD-TYPE      78       68        5        6       277
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  9(6P25.3) MUTATED          56         0         29          4
  DEL PEAK  9(6P25.3) WILD-TYPE       196         2        125         25
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK  9(6P25.3) MUTATED            5        3         0       1
  DEL PEAK  9(6P25.3) WILD-TYPE         60       17         1      12
D38V3, multiclass
            clus
vv           DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  STAGE I                             11                            78
  STAGE IA                            17                            68
  STAGE IB                             1                             5
  STAGE II                             0                             6
  STAGE IIA                           76                           277
  STAGE IIB                           56                           196
  STAGE III                            0                             2
  STAGE IIIA                          29                           125
  STAGE IIIB                           4                            25
  STAGE IIIC                           5                            60
  STAGE IV                             3                            17
  STAGE TIS                            0                             1
  STAGE X                              1                            12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK  9(6P25.3) MUTATED    45 138  15   6
  DEL PEAK  9(6P25.3) WILD-TYPE 231 486 121  34
D38V4, multiclass
    clus
vv   DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  T1                          45                           231
  T2                         138                           486
  T3                          15                           121
  T4                           6                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK  9(6P25.3) MUTATED   100  73  24   7
  DEL PEAK  9(6P25.3) WILD-TYPE 407 285  95  70
D38V5, multiclass
    clus
vv   DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  N0                         100                           407
  N1                          73                           285
  N2                          24                            95
  N3                           7                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V6, binary
                               cls
clus                              0   1
  DEL PEAK  9(6P25.3) MUTATED   174   4
  DEL PEAK  9(6P25.3) WILD-TYPE 715  18
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P25.3) MUTATED    174    4
  DEL PEAK  9(6P25.3) WILD-TYPE  715   18
   clus
vv  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  0                         174                           715
  1                           4                            18
[1] 2 2
[1] FALSE
D38V7, binary
                               cls
clus                              0   1
  DEL PEAK  9(6P25.3) MUTATED   200   4
  DEL PEAK  9(6P25.3) WILD-TYPE 868   8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P25.3) MUTATED    200    4
  DEL PEAK  9(6P25.3) WILD-TYPE  868    8
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  FEMALE                         200                           868
  MALE                             4                             8
[1] 2 2
[1] FALSE
D38V8, binary
                               cls
clus                              0   1
  DEL PEAK  9(6P25.3) MUTATED    73 109
  DEL PEAK  9(6P25.3) WILD-TYPE 356 409
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P25.3) MUTATED     73  109
  DEL PEAK  9(6P25.3) WILD-TYPE  356  409
     clus
vv    DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  NO                           73                           356
  YES                         109                           409
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK  9(6P25.3) MUTATED                            1
  DEL PEAK  9(6P25.3) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK  9(6P25.3) MUTATED                             161
  DEL PEAK  9(6P25.3) WILD-TYPE                           609
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK  9(6P25.3) MUTATED                               24
  DEL PEAK  9(6P25.3) WILD-TYPE                            176
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK  9(6P25.3) MUTATED                     2                     0
  DEL PEAK  9(6P25.3) WILD-TYPE                   4                     9
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK  9(6P25.3) MUTATED                                  5
  DEL PEAK  9(6P25.3) WILD-TYPE                               24
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK  9(6P25.3) MUTATED                    3              8
  DEL PEAK  9(6P25.3) WILD-TYPE                 14             39
D38V9, multiclass
                                  clus
vv                                 DEL PEAK  9(6P25.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            161
  INFILTRATING LOBULAR CARCINOMA                            24
  MEDULLARY CARCINOMA                                        2
  METAPLASTIC CARCINOMA                                      0
  MIXED HISTOLOGY (PLEASE SPECIFY)                           5
  MUCINOUS CARCINOMA                                         3
  OTHER  SPECIFY                                             8
                                  clus
vv                                 DEL PEAK  9(6P25.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              609
  INFILTRATING LOBULAR CARCINOMA                             176
  MEDULLARY CARCINOMA                                          4
  METAPLASTIC CARCINOMA                                        9
  MIXED HISTOLOGY (PLEASE SPECIFY)                            24
  MUCINOUS CARCINOMA                                          14
  OTHER  SPECIFY                                              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  9(6P25.3) MUTATED                                  0    14
  DEL PEAK  9(6P25.3) WILD-TYPE                                1    46
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  9(6P25.3) MUTATED                          39   134
  DEL PEAK  9(6P25.3) WILD-TYPE                       142   611
D38V11, multiclass
                                  clus
vv                                 DEL PEAK  9(6P25.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     14
  BLACK OR AFRICAN AMERICAN                                 39
  WHITE                                                    134
                                  clus
vv                                 DEL PEAK  9(6P25.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       46
  BLACK OR AFRICAN AMERICAN                                  142
  WHITE                                                      611
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V12, binary
                               cls
clus                              0   1
  DEL PEAK  9(6P25.3) MUTATED     6 170
  DEL PEAK  9(6P25.3) WILD-TYPE  33 705
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P25.3) MUTATED      6  170
  DEL PEAK  9(6P25.3) WILD-TYPE   33  705
                        clus
vv                       DEL PEAK  9(6P25.3) MUTATED
  HISPANIC OR LATINO                               6
  NOT HISPANIC OR LATINO                         170
                        clus
vv                       DEL PEAK  9(6P25.3) WILD-TYPE
  HISPANIC OR LATINO                                33
  NOT HISPANIC OR LATINO                           705
[1] 2 2
[1] FALSE

Clustering(39) Variable = DEL PEAK 10(6Q15) MUTATION ANALYSIS
D39V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 10(6Q15) MUTATED   307  47
  DEL PEAK 10(6Q15) WILD-TYPE 610 100
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        354                         710 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                         47                         100 
$`DEL PEAK 10(6Q15) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SE TCGA-A1-A0SG 
      129.14       131.67        42.81         9.96        43.43        14.27 
TCGA-A1-A0SN TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CM 
       39.32       121.94        87.25       101.98        55.43        24.79 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       88.60       107.93        77.19        75.25         5.19        98.99 
TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0ET TCGA-A2-A0SV TCGA-A2-A0T3 TCGA-A2-A0T6 
       25.22        80.28        35.05        27.12        49.84        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A25A 
       20.75        23.77        23.47        17.36        60.72       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3KD TCGA-A2-A3XS 
       42.44        17.19        18.15       105.34        39.65        33.93 
TCGA-A2-A3XW TCGA-A2-A4RY TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A13D TCGA-A7-A13F 
       56.28        21.30        38.30        30.61        31.73        25.15 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A8-A06O TCGA-A8-A06Q 
       20.61        11.34        11.28        11.97        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       17.98        26.01         1.02        53.98         9.01        43.00 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A08F 
       12.00        32.05        10.98         7.99         9.99        33.01 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A097 TCGA-A8-A09A 
       19.96        12.00        37.05        31.00        12.00         9.99 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q 
        1.02        49.05        45.07        29.98        33.07        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09W TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 
        8.98        19.04         0.99        13.02        21.04        27.02 
TCGA-A8-A0AD TCGA-AC-A23G TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A2QH 
       38.04        73.91        73.05        99.35        26.04        33.04 
TCGA-AC-A3BB TCGA-AC-A3TM TCGA-AC-A3W5 TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A62Y 
       32.45        25.05        16.57        29.26        16.80        17.42 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AN-A041 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AL 
       20.19         1.32         0.23         2.96         1.78         7.46 
TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        0.33         5.65         7.96         0.33         0.36         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XW TCGA-AO-A03N TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A0J2 
        0.33         5.59        66.77        68.75        47.87        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JE 
       21.40        26.04        37.48        20.32        22.36        76.77 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A126 TCGA-AO-A1KQ 
       26.24        50.24        62.04        55.33       108.72        61.87 
TCGA-AO-A1KT TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O 
       17.79       130.09        15.62        32.52         2.56        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A0U3 
       19.20        98.33         5.26       107.24        83.87       134.14 
TCGA-AR-A0U4 TCGA-AR-A1AQ TCGA-AR-A24K TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24T 
      107.21        99.32        50.89         2.76       112.77       105.27 
TCGA-AR-A24V TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A255 TCGA-B6-A0IJ TCGA-B6-A0RG 
      105.30        89.00        93.30        71.05       233.62        68.45 
TCGA-B6-A0RO TCGA-B6-A0RU TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A1KC 
      162.05       282.90        97.48        79.63       113.79        43.59 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40C TCGA-BH-A0AU 
      139.17       170.17        85.35        68.12        71.15        62.93 
TCGA-BH-A0B0 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0BA TCGA-BH-A0BF TCGA-BH-A0BJ 
       81.44        39.16        70.22        37.22        43.53        21.70 
TCGA-BH-A0BM TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0BW 
       61.68        75.48        74.14        76.60        45.57        77.95 
TCGA-BH-A0C3 TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DP 
       89.06        77.98        38.01        29.98        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DX TCGA-BH-A0E2 TCGA-BH-A0EI TCGA-BH-A0H0 
        3.22         2.56        70.88        14.30        24.43        15.16 
TCGA-BH-A0H7 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       23.08        52.96        26.50        51.32        27.25        50.79 
TCGA-BH-A0W3 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18L 
       23.93        44.81        32.91        35.93        90.84        26.66 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES 
       66.05         7.36        51.39        51.16        67.50       113.82 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FC TCGA-BH-A1FD 
       42.28        12.00        31.53        89.16       114.15        33.17 
TCGA-BH-A1FJ TCGA-BH-A1FM TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A28Q TCGA-BH-A42T 
       63.35        45.63        28.14        38.60         6.44        10.52 
TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P 
       20.88        23.51        18.87        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        12.66        12.66         3.16        13.51 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HG TCGA-C8-A1HO TCGA-C8-A26X TCGA-C8-A26Y 
       12.92         4.11        11.34        12.33        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HR 
        8.28         9.67         0.03        24.56        14.43        13.41 
TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A145 TCGA-D8-A1J9 TCGA-D8-A1JB 
       19.46        56.81        13.25        13.48        17.49        55.50 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JI TCGA-D8-A1JT TCGA-D8-A1X8 TCGA-D8-A1X9 
       18.15        18.90        18.97        13.32        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XF TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       27.58        18.15        15.22        19.92        17.69        55.30 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y3 
       16.64        12.99        16.54        15.52         9.93        14.14 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27W TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A109 
       10.09        13.08        12.26        12.66        34.42        46.59 
TCGA-E2-A10F TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A15E 
       28.87        33.17        75.98        69.96        23.24        20.71 
TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A1AZ TCGA-E2-A1BC 
       21.63        12.92        19.56        56.94        76.57        16.47 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IL TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LE 
       37.25        77.65         3.88        73.64        24.59        28.90 
TCGA-E2-A1LG TCGA-E2-A1LL TCGA-E2-A9RU TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 
       50.07        43.04        17.69        32.88        36.82        22.29 
TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1QZ TCGA-E9-A1R0 
       36.56        41.62        35.77        35.24        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RE 
       34.95        11.15        48.23        45.01        32.09        46.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A229 TCGA-E9-A22A 
        6.58        21.27        46.59        47.64        37.74        39.09 
TCGA-E9-A249 TCGA-E9-A2JS TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5UO TCGA-E9-A5UP 
        7.13        29.72        30.44        23.84        25.81        26.40 
TCGA-EW-A1IX TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OY 
       39.72        18.90        13.25        15.68        28.77        29.85 
TCGA-EW-A1P0 TCGA-EW-A1P5 TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A6S9 TCGA-EW-A6SD 
       41.13        23.11        22.09        34.03        15.22        33.21 
TCGA-GI-A2C9 TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A3XN TCGA-LD-A66U TCGA-LD-A7W6 
      109.87        83.34        75.02        66.38        21.24        13.28 
TCGA-LD-A9QF TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A8F5 
       10.62        15.32        14.70        14.50        19.53        19.59 
TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5RZ TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A6VQ 
       22.39        36.30        22.32        42.77        17.36        19.73 
TCGA-OL-A6VR TCGA-PE-A5DC TCGA-PE-A5DE TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH 
       40.11        47.01        86.96        18.81        18.48        21.07 
TCGA-S3-AA10 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA17 TCGA-UU-A93S TCGA-Z7-A8R5 
       19.27        18.87        17.39        13.94         3.81       108.07 

$`DEL PEAK 10(6Q15) WILD-TYPE`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD 
       40.14        11.44        48.56        48.36         8.52        14.37 
TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM 
       48.10        47.24        20.88        13.68        31.79         7.96 
TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
       28.01        19.20        18.21       143.15        18.02        78.41 
TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO 
       73.84        63.12        36.13       136.73        99.12       114.81 
TCGA-A2-A0CP TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 
       92.48       107.93        56.81        67.33        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
       61.58       101.72        89.36       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       99.19        54.64        44.88        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0YC TCGA-A2-A0YD 
       17.13         8.38        20.52        17.46        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       19.33        48.46        31.73        22.45        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XT 
       19.56        16.47        52.47        10.59        36.23        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       29.98        32.75        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 
        7.30        24.39        23.21        26.96        21.14        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       35.31        34.29        35.47        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F 
       29.79        20.19        23.61        29.56        31.36        24.26 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3IZ TCGA-A7-A3J0 
       23.74        23.80        21.73        22.32        10.59        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       13.41        14.70        14.93        13.74        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV 
       17.92        14.73        12.10        10.72        11.05        10.29 
TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A06U 
        9.37        10.42         8.75        13.02        53.06        29.03 
TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
       31.00        17.03        19.99        18.97        18.97        14.01 
TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 
        9.99         8.98        24.99        45.07        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08L TCGA-A8-A08P 
       13.02         0.99        38.01        28.96         9.99        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
        0.99        33.01       112.08        43.00        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09D 
       30.97        17.95        41.98         9.99        12.00        50.04 
TCGA-A8-A09N TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A7 
        1.02        15.02        14.01        12.00        19.04         0.99 
TCGA-A8-A0AB TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB 
       17.03         0.95        22.95         5.72         1.48        40.57 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI 
       86.66        90.71        60.92        87.12        74.14        19.33 
TCGA-AC-A2QJ TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ 
       14.66         6.48        16.31        14.83        22.19        24.13 
TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EI 
       14.99        19.79        15.48        23.24        24.79        14.53 
TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IW 
       19.33        14.96        11.44        13.71        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OS 
       12.26         1.68         8.22         0.03         1.12         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.33         0.33         0.62         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FK 
        7.36         0.16         0.33         0.33         6.44         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FY TCGA-AN-A0XL 
        7.59         7.17         6.90         7.04         0.33         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P 
        0.33         5.33        80.28        61.35        81.63        95.70 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       58.95        29.13        52.18        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 
       50.86        72.00        65.10        71.80       115.27        99.25 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03        90.58        98.27        64.04        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       48.36        41.62        40.57        14.73        82.62        70.39 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AR-A0TP TCGA-AR-A0TS 
        0.53        24.79        26.93         5.65       140.55        84.10 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 
      109.02        75.22        98.93        64.83        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      133.22       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS 
       98.33        96.00        86.07        93.90        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24Q TCGA-AR-A24S 
       94.22       120.33        99.78       118.59       104.28        97.84 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A254 
       77.69        32.58        98.76        98.66        99.62        85.64 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL 
       93.83       166.42        20.25        86.53        54.21        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM 
       63.62        38.17        39.39        40.54        57.27        73.35 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       12.13       275.87       129.57        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      112.37        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      140.88       255.68       212.25       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RV 
      263.28       102.77       140.48       100.70        89.46       157.41 
TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
      188.68        18.35        21.47       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A3ZX 
       28.27        68.94        58.88       101.52        73.51        37.87 
TCGA-B6-A400 TCGA-B6-A402 TCGA-B6-A409 TCGA-B6-A40B TCGA-BH-A0AV TCGA-BH-A0AW 
        7.07        70.16        18.84       103.63        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0B7 
       25.55        63.09        40.83        39.55        81.63        84.13 
TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BO 
       51.68        32.02        18.21        61.51        74.89        72.23 
TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 
       53.95        49.94        49.05        41.75        44.02        90.97 
TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DT TCGA-BH-A0DV 
       45.83        23.44        13.91        17.26        38.47        67.86 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
       16.27         4.41        15.68         9.63        44.81        46.19 
TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H3 
       32.58        24.49        31.00        30.35        10.78        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       53.26        24.56        41.00        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 
       13.61        36.85        12.89         5.59        24.95        42.35 
TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
       23.05         4.90        20.12        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EW TCGA-BH-A1EX 
       55.63        37.55        91.99        82.85        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FE 
       17.69        25.81        97.48        24.62       120.62        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
      122.89        36.92        55.00        72.07       144.59        72.07 
TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 
       26.14        83.31        57.83       130.16        10.65        20.12 
TCGA-BH-A42U TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 
      109.28        18.64         9.63         5.26         9.70        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12V TCGA-C8-A12Y TCGA-C8-A12Z 
        9.44        11.93        11.77        12.66        48.53        12.56 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HI 
        1.87        12.59         4.08        12.33        10.92        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V 
        0.16        12.03        10.42        12.33        12.95        20.25 
TCGA-C8-A26W TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
       12.53         9.53         9.50        33.99        12.95        13.02 
TCGA-C8-A8HQ TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 
       12.49        20.88        20.58        13.97        14.17        21.14 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JG 
       19.20        14.17        16.50        15.78        12.03        53.00 
TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       14.01        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       21.01        12.20        14.70        18.58        17.79        16.73 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XQ 
       12.39        17.16        14.73        21.80        14.50        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y2 
       15.85        16.31        15.16        43.04        15.32        14.24 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27V TCGA-D8-A3Z5 
       16.41        13.48         4.80         1.61        12.53        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 
       18.51        21.67        16.18        25.22        43.00        27.52 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A14N TCGA-E2-A14O 
       40.41        37.51        40.11        28.44        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       40.96        38.24        38.60        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A155 
       31.96        69.34        18.51        63.62        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       23.87        14.79        25.05        23.34        22.82        17.29 
TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       18.21        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       50.79        14.07        51.39        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       32.35        28.50        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       28.44        59.18        22.19        60.99        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       60.36        19.66        75.81       106.75       102.61         8.75 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       26.99        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NC 
       38.76        34.29        34.82        34.16        36.20        39.55 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       25.84        18.94         9.86         2.56         6.12         3.02 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A22B 
       40.24         1.12        34.45        32.05        42.25        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3HO 
       38.99         1.94        24.56        12.33         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A6HE 
       32.91        30.18        23.90        26.70         0.79        27.85 
TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J3 TCGA-EW-A1OV TCGA-EW-A1OW 
       12.20         8.48        18.21        16.57        25.94        22.82 
TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P6 
       29.95        40.41        39.78        52.96        29.82        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       10.52        14.43        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB 
       25.91        17.49        10.16        23.51        16.77        24.99 
TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DF 
       31.30         7.40        59.57       216.76        79.10        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A4E0 
       85.35       110.50        38.20        43.73        69.30        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.47        11.84        11.57 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.22         7.10        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR 
       17.06        14.47        14.79        22.26         2.63        16.08 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 
       15.68         7.46        12.36        17.49        27.91         2.10 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       58.52        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       28.87        24.72        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A97C TCGA-PE-A5DD 
       41.92        26.04        14.07        28.21         8.91        64.21 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA15 
        0.16         0.26         9.93        20.68        13.84        17.26 
TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
       17.03        66.84        11.41        52.96        29.03        15.35 
TCGA-XX-A89A TCGA-Z7-A8R6 
       16.04       107.05 

  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                       0.03                        0.03 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                     282.90                      281.29 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                      27.07                       28.24 
[1] "0.0 - 282.9 (27.1)" "0.0 - 281.3 (28.2)"
[1] "hr=" "1"  
D39V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 10(6Q15) MUTATED        28       29        2        0       103
  DEL PEAK 10(6Q15) WILD-TYPE      61       56        4        6       250
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 10(6Q15) MUTATED          94         0         58         14
  DEL PEAK 10(6Q15) WILD-TYPE       158         2         96         15
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 10(6Q15) MUTATED           17        8         0       5
  DEL PEAK 10(6Q15) WILD-TYPE         48       12         1       8
D39V3, multiclass
            clus
vv           DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  STAGE I                           28                          61
  STAGE IA                          29                          56
  STAGE IB                           2                           4
  STAGE II                           0                           6
  STAGE IIA                        103                         250
  STAGE IIB                         94                         158
  STAGE III                          0                           2
  STAGE IIIA                        58                          96
  STAGE IIIB                        14                          15
  STAGE IIIC                        17                          48
  STAGE IV                           8                          12
  STAGE TIS                          0                           1
  STAGE X                            5                           8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  DEL PEAK 10(6Q15) MUTATED    98 201  41  17
  DEL PEAK 10(6Q15) WILD-TYPE 178 423  95  23
D39V4, multiclass
    clus
vv   DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  T1                        98                         178
  T2                       201                         423
  T3                        41                          95
  T4                        17                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  DEL PEAK 10(6Q15) MUTATED   149 130  49  23
  DEL PEAK 10(6Q15) WILD-TYPE 358 228  70  54
D39V5, multiclass
    clus
vv   DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  N0                       149                         358
  N1                       130                         228
  N2                        49                          70
  N3                        23                          54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V6, binary
                             cls
clus                            0   1
  DEL PEAK 10(6Q15) MUTATED   295   9
  DEL PEAK 10(6Q15) WILD-TYPE 594  13
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q15) MUTATED    295    9
  DEL PEAK 10(6Q15) WILD-TYPE  594   13
   clus
vv  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  0                       295                         594
  1                         9                          13
[1] 2 2
[1] FALSE
D39V7, binary
                             cls
clus                            0   1
  DEL PEAK 10(6Q15) MUTATED   355   3
  DEL PEAK 10(6Q15) WILD-TYPE 713   9
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q15) MUTATED    355    3
  DEL PEAK 10(6Q15) WILD-TYPE  713    9
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  FEMALE                       355                         713
  MALE                           3                           9
[1] 2 2
[1] FALSE
D39V8, binary
                             cls
clus                            0   1
  DEL PEAK 10(6Q15) MUTATED   132 186
  DEL PEAK 10(6Q15) WILD-TYPE 297 332
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q15) MUTATED    132  186
  DEL PEAK 10(6Q15) WILD-TYPE  297  332
     clus
vv    DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  NO                        132                         297
  YES                       186                         332
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  DEL PEAK 10(6Q15) MUTATED                            0
  DEL PEAK 10(6Q15) WILD-TYPE                          1
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 10(6Q15) MUTATED                             266
  DEL PEAK 10(6Q15) WILD-TYPE                           504
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 10(6Q15) MUTATED                               53
  DEL PEAK 10(6Q15) WILD-TYPE                            147
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 10(6Q15) MUTATED                     2                     1
  DEL PEAK 10(6Q15) WILD-TYPE                   4                     8
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 10(6Q15) MUTATED                                 13
  DEL PEAK 10(6Q15) WILD-TYPE                               16
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 10(6Q15) MUTATED                    8             15
  DEL PEAK 10(6Q15) WILD-TYPE                  9             32
D39V9, multiclass
                                  clus
vv                                 DEL PEAK 10(6Q15) MUTATED
  INFILTRATING CARCINOMA NOS                               0
  INFILTRATING DUCTAL CARCINOMA                          266
  INFILTRATING LOBULAR CARCINOMA                          53
  MEDULLARY CARCINOMA                                      2
  METAPLASTIC CARCINOMA                                    1
  MIXED HISTOLOGY (PLEASE SPECIFY)                        13
  MUCINOUS CARCINOMA                                       8
  OTHER  SPECIFY                                          15
                                  clus
vv                                 DEL PEAK 10(6Q15) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            504
  INFILTRATING LOBULAR CARCINOMA                           147
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      8
  MIXED HISTOLOGY (PLEASE SPECIFY)                          16
  MUCINOUS CARCINOMA                                         9
  OTHER  SPECIFY                                            32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 10(6Q15) MUTATED                                  0    27
  DEL PEAK 10(6Q15) WILD-TYPE                                1    33
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 10(6Q15) MUTATED                          60   234
  DEL PEAK 10(6Q15) WILD-TYPE                       121   511
D39V11, multiclass
                                  clus
vv                                 DEL PEAK 10(6Q15) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                   27
  BLACK OR AFRICAN AMERICAN                               60
  WHITE                                                  234
                                  clus
vv                                 DEL PEAK 10(6Q15) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     33
  BLACK OR AFRICAN AMERICAN                                121
  WHITE                                                    511
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V12, binary
                             cls
clus                            0   1
  DEL PEAK 10(6Q15) MUTATED    11 288
  DEL PEAK 10(6Q15) WILD-TYPE  28 587
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q15) MUTATED     11  288
  DEL PEAK 10(6Q15) WILD-TYPE   28  587
                        clus
vv                       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  HISPANIC OR LATINO                            11                          28
  NOT HISPANIC OR LATINO                       288                         587
[1] 2 2
[1] FALSE

Clustering(40) Variable = DEL PEAK 11(6Q27) MUTATION ANALYSIS
D40V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 11(6Q27) MUTATED   325  45
  DEL PEAK 11(6Q27) WILD-TYPE 592 102
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        370                         694 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                         45                         102 
$`DEL PEAK 11(6Q27) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-5T-A9QA TCGA-A1-A0SE TCGA-A1-A0SH TCGA-A1-A0SN 
      129.14       131.67         9.96        43.43        47.24        39.32 
TCGA-A1-A0SO TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       28.01       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU 
      136.73        88.60       107.93        77.19        75.25         5.19 
TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0ET TCGA-A2-A0SV 
       98.99        56.81        25.22        80.28        35.05        27.12 
TCGA-A2-A0T0 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YJ TCGA-A2-A0YT 
       17.52        49.84        20.52        20.75        18.61        23.77 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       17.36        60.72       107.70        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A3KD TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A4RW TCGA-A2-A4RY 
      105.34        39.65        32.75        56.28         7.30        21.30 
TCGA-A2-A4S1 TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13F 
       26.96        38.30        30.61        35.67        31.73        25.15 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A6VY 
       20.61        11.34        10.59        11.28        11.97         8.75 
TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
       13.02        17.98        53.06        26.01         1.02        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07J TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07W 
       53.98         9.01        12.00         8.98         7.99         9.99 
TCGA-A8-A08B TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A097 
       38.01        19.96        12.00        37.05         0.99        12.00 
TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09R 
        9.99         1.02        49.05        45.07        29.98         8.98 
TCGA-A8-A09T TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-AC-A23G 
       19.04        13.02        21.04         0.99        27.02        73.91 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A3BB TCGA-AC-A3OD TCGA-AC-A3TM TCGA-AC-A3W5 
       73.05        99.35        32.45        14.83        25.05        16.57 
TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5XS TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AN-A041 
       29.26        16.80        19.33        20.19         1.32         0.23 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FJ 
        1.78         1.71         0.16         0.33         5.65         7.96 
TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         0.33         5.59        80.28 
TCGA-AO-A03N TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J6 
       66.77        68.75        47.87        32.78        21.40        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL 
       20.32        22.36        26.24        50.24        62.04        55.33 
TCGA-AO-A124 TCGA-AO-A1KT TCGA-AQ-A04L TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 
      115.27        17.79       130.09         2.56        32.91        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TW TCGA-AR-A0TZ TCGA-AR-A0U2 
      140.55        98.33         5.26        98.93       107.24        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24P TCGA-AR-A24Q 
      134.14        94.29        33.73        50.89         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A255 
      112.77       105.27       105.30        99.62        93.30        71.05 
TCGA-AR-A256 TCGA-AR-A2LO TCGA-AR-A5QQ TCGA-B6-A0IA TCGA-B6-A0IJ TCGA-B6-A0RE 
       93.83        39.39        10.59       275.87       233.62       255.68 
TCGA-B6-A0RG TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WS TCGA-B6-A0WT 
       68.45       162.05       100.70       282.90        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A1KC TCGA-B6-A1KN TCGA-B6-A2IU 
       79.63       113.79       245.10        43.59       139.17       170.17 
TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0B0 
       85.35        68.12        18.84        71.15        62.93        81.44 
TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0BD TCGA-BH-A0BF 
       40.83        39.55        39.16        70.22        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       61.51        21.70        61.68        72.23        75.48        74.14 
TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0DE 
       45.57        77.95        49.05        41.75        89.06        77.98 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0H0 TCGA-BH-A0H7 
       38.01        29.98        78.28        15.65        15.16        23.08 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W3 
       52.96        26.50        51.32        27.25        50.79        23.93 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18R 
       23.05        32.91        35.93        90.84        26.66        37.55 
TCGA-BH-A18S TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EV 
       66.05        51.16        91.99       113.82        42.28        12.00 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FM 
       31.53        89.16       114.15        33.17        74.73        45.63 
TCGA-BH-A201 TCGA-BH-A42V TCGA-BH-A8FZ TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O 
       28.14        20.88        18.87        11.93        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A134 
       11.77        12.66        12.66        12.66        12.66        12.59 
TCGA-C8-A137 TCGA-C8-A1HG TCGA-C8-A1HO TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
        4.11        11.34        12.33        12.95         8.28         9.67 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HP TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A140 
       24.56        14.43        13.02        13.41        19.46        13.25 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       13.48        19.20        55.50        15.78        18.15        18.90 
TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XF 
       53.00        18.97        20.09        27.58        18.15        15.22 
TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1Y0 
       19.92        55.30        16.41        16.64        12.99        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27M TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27W 
        9.93        14.14        13.48        10.09        13.08        12.26 
TCGA-D8-A73W TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10F TCGA-E2-A14T TCGA-E2-A14V 
       12.66        34.42        46.59        28.87        75.98        34.26 
TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A158 TCGA-E2-A15E TCGA-E2-A15F 
       18.51        69.96        23.24        14.79        20.71        21.63 
TCGA-E2-A15H TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1B0 
       12.92        19.56        56.94        14.07        76.57        53.62 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IL TCGA-E2-A1L8 TCGA-E2-A1LA 
       16.47        37.25        77.65         3.88        73.64        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LL 
       75.81        28.90        50.07       106.75       102.61        43.04 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        22.29        34.16        36.56        39.55 
TCGA-E9-A1NE TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1RA 
       35.77        24.82        28.27         6.12        11.15        45.01 
TCGA-E9-A1RB TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A229 TCGA-E9-A22A 
       32.09         6.58        46.59        47.64        37.74        39.09 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A2JS 
       41.72        40.73        20.12         1.94         7.13        29.72 
TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IX TCGA-EW-A1J1 
       30.44        23.84        25.81        26.40        39.72        18.90 
TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1P0 TCGA-EW-A1P5 TCGA-EW-A3E8 TCGA-EW-A3U0 
       15.68        28.77        41.13        23.11        34.03        17.49 
TCGA-EW-A424 TCGA-EW-A6SD TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF 
       23.51        33.21        79.10        83.34        75.02        70.85 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A7W6 
       69.30        66.38         2.60        11.84        21.24        13.28 
TCGA-LD-A9QF TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FR TCGA-LL-A740 
       10.62        15.32        14.70        14.47        16.08        14.50 
TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5DA TCGA-OL-A5S0 
       19.53        19.59        22.39        36.30        58.62        20.38 
TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        17.36        14.07        28.21        19.73        40.11 
TCGA-PE-A5DC TCGA-PE-A5DE TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH 
       47.01        86.96         9.93        18.81        18.48        21.07 
TCGA-S3-AA10 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-UU-A93S 
       19.27        18.87        17.39         3.81 

$`DEL PEAK 11(6Q27) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
       42.81        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SD TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       14.37        48.10        14.27        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        19.20        18.21       143.15        18.02        78.41 
TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       63.12        36.13        99.12        24.79       114.81        92.48 
TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM 
      107.93        67.33        34.55        33.76        61.58       101.72 
TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU 
       89.36       118.45        79.76        74.40        72.00        34.29 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU 
       31.82        61.94        24.72        63.29        99.19        54.64 
TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T5 
       44.88        50.43        44.28        17.13         8.38        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV 
       21.67        49.48        19.33        48.46        31.73        23.47 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       22.45        20.25        19.20        19.56        16.47        52.47 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XX 
       10.59        36.23        33.93        91.07        29.98        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S0 TCGA-A2-A4S2 
       35.93        50.37        50.83        24.39        23.21        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DB 
       21.90        35.31        34.29        35.47        37.45        33.11 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F 
       29.79        20.19        23.61        29.56        31.36        24.26 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3J0 TCGA-A7-A3RF 
       23.74        23.80        21.73        22.32        10.29        13.41 
TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.70        14.93        13.74        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW 
       14.73        12.10        10.72        11.05        10.29         9.37 
TCGA-A7-A6VX TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A07B 
       10.42        13.02         1.02        29.03        31.00        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O 
       19.99        18.97        18.97        14.01        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 
       10.98        24.99        45.07        15.06        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
        0.99        28.96        33.01         9.99        31.00        31.00 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       33.01       112.08        43.00        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       17.95        41.98         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        1.02        25.02        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23H 
       19.04        17.03        38.04         0.95        22.95         5.72 
TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
        1.48        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3EH 
       26.04        74.14        33.04        19.33        14.66         6.48 
TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 
       16.31        22.19        24.13        14.99        19.79        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EI TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X 
       23.24        24.79        14.53        14.96        11.44        13.71 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       17.42        18.67        13.58        12.26         1.68         8.22 
TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 
        0.03         1.12         2.30         0.33         0.33         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AR 
        0.62         2.96         9.96         7.36         7.46         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        0.33         6.44         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP 
        7.04         0.36         0.33         5.36        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03M 
        0.33         0.33         0.33         0.33         5.33        61.35 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J5 
       81.63        95.70        58.95        29.13        52.18        26.04 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       53.03        21.53        50.70        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       65.10        71.80        99.25       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
       90.58        98.27        64.04        57.30        48.36        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
       40.57        14.73        82.62        61.87        70.39         0.53 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93         5.65        15.62        32.52        84.10 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
      109.02        75.22        64.83        55.86        65.36       133.22 
TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      107.21       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR 
       98.33        96.00        86.07        93.90        99.32        17.23 
TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24L 
       37.81        61.28        86.53        86.43       160.90        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24W 
      120.33        99.78       118.59        97.84        77.69        32.58 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH 
       98.76        98.66        89.00        85.64       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ 
       86.53        54.21        66.15        63.62        38.17        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I1 TCGA-B6-A0I2 
       57.27        73.35        33.30        38.96        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
      281.29        12.13       129.57        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      112.37        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN 
      140.88       212.25       234.28        81.17        78.02       263.28 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WW TCGA-B6-A0WX 
      102.77       140.48        89.46       157.41        18.35        21.47 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF 
      206.86       129.70        28.27        68.94        58.88       101.52 
TCGA-B6-A1KI TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A402 TCGA-B6-A40B TCGA-BH-A0AV 
       73.51        37.87         7.07        70.16       103.63        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 
       20.45        25.55        63.09        81.63        84.13        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV 
       37.22        32.02        74.89        76.60        53.95        49.94 
TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DK TCGA-BH-A0DO 
       44.02        90.97        45.83        23.44        13.91        17.26 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        38.47        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        46.19 
TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       32.58        24.49        31.00        24.43        30.35        10.78 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HK 
       37.78        53.26        24.56        41.00        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0RX TCGA-BH-A0W4 
        2.50        13.61        36.85        12.89         5.59        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18N 
       42.35        44.81         4.90        20.12        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1ET 
       30.28        55.63         7.36        51.39        67.50        82.85 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1F8 
       55.69        49.58        17.69        25.81        97.48        24.62 
TCGA-BH-A1FB TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN 
      120.62       122.89        36.92        63.35        55.00        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
      144.59        72.07        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 
       18.64        23.51         9.63         5.26         9.70        21.76 
TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12V TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
        9.44        11.77        12.66        48.53        12.56         3.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
       13.51         1.87        12.92         4.08        12.33        10.92 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN 
       11.28         0.16        12.03        10.42        12.33        12.95 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       20.25        12.53        12.36         9.53         0.03         9.50 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A141 
       33.99        12.95        12.49        56.81        20.88        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       13.97        14.17        21.14        14.17        17.49        16.50 
TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN 
       12.03        14.01        20.09        20.12        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG 
       16.73        25.74        23.90        12.39        17.16        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XV 
       21.80        14.50        17.69        15.85        16.31        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F 
       43.04        16.54        15.32        14.24        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N 
       13.45        13.05        14.43        48.03        16.41         4.80 
TCGA-D8-A27P TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
        1.61        12.53        33.37        18.51        21.67        16.18 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       25.22        43.00        27.52        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.44        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 
       33.17        43.33        32.02        31.96        69.34        63.62 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       17.29        18.21        55.63        53.92         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       11.05        50.79        51.39        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ 
       28.50        37.41        70.36        33.73        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
       59.18        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L9 TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
       19.66         8.75        26.99        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
       30.61        34.92        38.76        34.29        17.69        34.82 
TCGA-E9-A1N9 TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       36.20        41.62        35.24        25.84        18.94         9.86 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RD 
       34.95         2.56         3.02        48.23        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A22B 
       46.65        21.27        34.45        32.05        42.25        38.37 
TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A24A TCGA-E9-A295 
       41.03        40.50         0.69        38.99        24.56        12.33 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A5FK 
        9.47        38.07        32.91        30.18        23.90        26.70 
TCGA-E9-A5FL TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 
        0.79        27.85        12.20         8.48        18.21        13.25 
TCGA-EW-A1J3 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        25.94        22.82        29.95        29.85        40.41 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        52.96        29.82        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF 
       18.90        19.99         6.15        13.94        10.52        14.43 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A423 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GI-A2C8 
       10.16        15.22        16.77        24.99        31.30         7.40 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
      109.87        59.57       216.76        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
      115.69       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YX 
       43.73        72.03        13.55        18.12        62.47        11.57 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.22         7.10        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z 
       17.06        14.79        22.26         2.63        15.68         7.46 
TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 
       12.36        17.49        27.91         2.10        58.52        31.99 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       40.08        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66N TCGA-OL-A97C 
       26.70        23.47        65.62        41.92        26.04         8.91 
TCGA-PE-A5DD TCGA-PL-A8LX TCGA-PL-A8LY TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA15 
       64.21         0.16         0.26        20.68        13.84        17.26 
TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       13.94        17.03        66.84        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                       0.16                        0.03 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                     282.90                      281.29 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                      28.24                       26.96 
[1] "0.2 - 282.9 (28.2)" "0.0 - 281.3 (27.0)"
[1] "hr=" "1.3"
D40V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 11(6Q27) MUTATED        30       28        2        0       123
  DEL PEAK 11(6Q27) WILD-TYPE      59       57        4        6       230
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 11(6Q27) MUTATED          96         0         58         12
  DEL PEAK 11(6Q27) WILD-TYPE       156         2         96         17
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 11(6Q27) MUTATED           13        6         0       6
  DEL PEAK 11(6Q27) WILD-TYPE         52       14         1       7
D40V3, multiclass
            clus
vv           DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  STAGE I                           30                          59
  STAGE IA                          28                          57
  STAGE IB                           2                           4
  STAGE II                           0                           6
  STAGE IIA                        123                         230
  STAGE IIB                         96                         156
  STAGE III                          0                           2
  STAGE IIIA                        58                          96
  STAGE IIIB                        12                          17
  STAGE IIIC                        13                          52
  STAGE IV                           6                          14
  STAGE TIS                          0                           1
  STAGE X                            6                           7
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  DEL PEAK 11(6Q27) MUTATED    97 220  41  15
  DEL PEAK 11(6Q27) WILD-TYPE 179 404  95  25
D40V4, multiclass
    clus
vv   DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  T1                        97                         179
  T2                       220                         404
  T3                        41                          95
  T4                        15                          25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  DEL PEAK 11(6Q27) MUTATED   168 138  46  17
  DEL PEAK 11(6Q27) WILD-TYPE 339 220  73  60
D40V5, multiclass
    clus
vv   DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  N0                       168                         339
  N1                       138                         220
  N2                        46                          73
  N3                        17                          60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V6, binary
                             cls
clus                            0   1
  DEL PEAK 11(6Q27) MUTATED   318   8
  DEL PEAK 11(6Q27) WILD-TYPE 571  14
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q27) MUTATED    318    8
  DEL PEAK 11(6Q27) WILD-TYPE  571   14
   clus
vv  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  0                       318                         571
  1                         8                          14
[1] 2 2
[1] FALSE
D40V7, binary
                             cls
clus                            0   1
  DEL PEAK 11(6Q27) MUTATED   373   2
  DEL PEAK 11(6Q27) WILD-TYPE 695  10
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q27) MUTATED    373    2
  DEL PEAK 11(6Q27) WILD-TYPE  695   10
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  FEMALE                       373                         695
  MALE                           2                          10
[1] 2 2
[1] FALSE
D40V8, binary
                             cls
clus                            0   1
  DEL PEAK 11(6Q27) MUTATED   130 203
  DEL PEAK 11(6Q27) WILD-TYPE 299 315
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q27) MUTATED    130  203
  DEL PEAK 11(6Q27) WILD-TYPE  299  315
     clus
vv    DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  NO                        130                         299
  YES                       203                         315
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  DEL PEAK 11(6Q27) MUTATED                            0
  DEL PEAK 11(6Q27) WILD-TYPE                          1
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 11(6Q27) MUTATED                             281
  DEL PEAK 11(6Q27) WILD-TYPE                           489
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 11(6Q27) MUTATED                               55
  DEL PEAK 11(6Q27) WILD-TYPE                            145
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 11(6Q27) MUTATED                     2                     2
  DEL PEAK 11(6Q27) WILD-TYPE                   4                     7
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 11(6Q27) MUTATED                                 11
  DEL PEAK 11(6Q27) WILD-TYPE                               18
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 11(6Q27) MUTATED                    8             15
  DEL PEAK 11(6Q27) WILD-TYPE                  9             32
D40V9, multiclass
                                  clus
vv                                 DEL PEAK 11(6Q27) MUTATED
  INFILTRATING CARCINOMA NOS                               0
  INFILTRATING DUCTAL CARCINOMA                          281
  INFILTRATING LOBULAR CARCINOMA                          55
  MEDULLARY CARCINOMA                                      2
  METAPLASTIC CARCINOMA                                    2
  MIXED HISTOLOGY (PLEASE SPECIFY)                        11
  MUCINOUS CARCINOMA                                       8
  OTHER  SPECIFY                                          15
                                  clus
vv                                 DEL PEAK 11(6Q27) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            489
  INFILTRATING LOBULAR CARCINOMA                           145
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      7
  MIXED HISTOLOGY (PLEASE SPECIFY)                          18
  MUCINOUS CARCINOMA                                         9
  OTHER  SPECIFY                                            32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 11(6Q27) MUTATED                                  0    25
  DEL PEAK 11(6Q27) WILD-TYPE                                1    35
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 11(6Q27) MUTATED                          61   253
  DEL PEAK 11(6Q27) WILD-TYPE                       120   492
D40V11, multiclass
                                  clus
vv                                 DEL PEAK 11(6Q27) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                   25
  BLACK OR AFRICAN AMERICAN                               61
  WHITE                                                  253
                                  clus
vv                                 DEL PEAK 11(6Q27) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     35
  BLACK OR AFRICAN AMERICAN                                120
  WHITE                                                    492
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V12, binary
                             cls
clus                            0   1
  DEL PEAK 11(6Q27) MUTATED    10 305
  DEL PEAK 11(6Q27) WILD-TYPE  29 570
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q27) MUTATED     10  305
  DEL PEAK 11(6Q27) WILD-TYPE   29  570
                        clus
vv                       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  HISPANIC OR LATINO                            10                          29
  NOT HISPANIC OR LATINO                       305                         570
[1] 2 2
[1] FALSE

Clustering(41) Variable = DEL PEAK 12(7P22.3) MUTATION ANALYSIS
D41V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 12(7P22.3) MUTATED   117  18
  DEL PEAK 12(7P22.3) WILD-TYPE 800 129
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          135                           929 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                           18                           129 
$`DEL PEAK 12(7P22.3) MUTATED`
TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A04U 
       48.36         9.96        31.79        28.01        73.84        87.25 
TCGA-A2-A0CM TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D4 
       24.79        75.25       107.93        67.33        34.55        25.22 
TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0SX TCGA-A2-A0T3 TCGA-A2-A0YT TCGA-A2-A1G1 
       79.76        35.05        50.43        49.84        23.77        19.20 
TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A7-A0CD TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DC 
       50.83        24.39        38.30        30.61        35.67        29.79 
TCGA-A7-A13G TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06Q 
       23.61        21.73        22.32        10.42        13.02         1.02 
TCGA-A8-A06U TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07R 
       29.03         9.01        43.00        18.97        14.01         8.98 
TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08S TCGA-A8-A091 
       38.01        33.01        12.00         9.99        33.01        33.01 
TCGA-A8-A092 TCGA-A8-A09K TCGA-A8-A09M TCGA-AC-A23E TCGA-AC-A62X TCGA-AN-A04C 
       30.97        29.98        33.07        22.95        13.71         1.78 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XS TCGA-AO-A03L TCGA-AO-A0J4 TCGA-AO-A0J7 
        0.33         0.33         0.33        80.28        52.18        20.32 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KS TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A54N 
       48.36        41.62         0.53        26.93       130.09         2.56 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0U4 TCGA-AR-A1AQ TCGA-AR-A24Q TCGA-AR-A255 
       75.22        98.93       107.21        99.32       104.28        71.05 
TCGA-AR-A256 TCGA-AR-A2LK TCGA-B6-A0I9 TCGA-B6-A0IJ TCGA-B6-A0IQ TCGA-B6-A0RG 
       93.83        54.21        12.13       233.62       140.88        68.45 
TCGA-B6-A0RS TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A0X7 TCGA-B6-A1KN TCGA-B6-A402 
      100.70       113.79       245.10        58.88       139.17        70.16 
TCGA-B6-A408 TCGA-BH-A0B2 TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BW TCGA-BH-A0C7 
       68.12        40.83        61.51        74.89        77.95        90.97 
TCGA-BH-A0DZ TCGA-BH-A0E6 TCGA-BH-A18F TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EW 
       16.27         9.63        32.91        51.39        51.16        55.69 
TCGA-BH-A1F8 TCGA-BH-A208 TCGA-C8-A137 TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A274 
       24.62        57.83         4.11        12.95         8.28         9.53 
TCGA-C8-A27B TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JJ 
       14.43        19.20        17.49        18.15        18.90        20.09 
TCGA-D8-A1JM TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XW 
       19.40        27.58        18.15        14.50        16.41        43.04 
TCGA-D8-A1Y3 TCGA-D8-A27M TCGA-E2-A105 TCGA-E2-A158 TCGA-E2-A15H TCGA-E2-A15S 
       14.14        13.48        43.00        14.79        12.92        14.07 
TCGA-E2-A1AZ TCGA-E2-A1L7 TCGA-E9-A1NF TCGA-E9-A1RE TCGA-E9-A22G TCGA-E9-A244 
       76.57        60.36        35.24        46.65        40.73         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1J6 
       38.99         1.94        23.84         0.79        26.40        28.77 
TCGA-EW-A1OW TCGA-EW-A6SA TCGA-EW-A6SB TCGA-GI-A2C9 TCGA-GM-A2DH TCGA-GM-A3XL 
       22.82        16.77        24.99       109.87        72.10        69.30 
TCGA-LL-A5YP TCGA-LL-A7T0 TCGA-S3-A6ZG 
       14.79        12.36        18.48 

$`DEL PEAK 12(7P22.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ 
       20.88        13.68         7.96        39.32        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W 
      143.15        18.02        78.41       121.94        63.12       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43        36.13       136.73        99.12       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX 
       88.60       107.93        77.19         5.19        98.99        56.81 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       33.76        61.58       101.72        89.36        80.28       118.45 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       74.40        72.00        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       63.29        99.19        54.64        27.12        44.88        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.52        17.13         8.38        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 
       23.47        17.36        60.72        22.45        20.25        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       16.47        52.47       107.70        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 
        7.30        21.30        23.21        26.96        21.14        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A13D 
       35.31        34.29        35.47        37.45        33.11        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       20.19        25.15        29.56        31.36        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 
       23.80        20.61        11.34        10.59        10.29        11.28 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD 
       13.41        14.70        11.97        14.93        13.74        14.50 
TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       21.17        17.92        14.73        12.10        10.72        11.05 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06T 
       10.29         9.37         8.75        13.02        17.98        53.06 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07E 
       31.00        26.01         1.02        17.03        53.98        19.99 
TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S 
       18.97        12.00        32.05         9.99        10.98         7.99 
TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 
       24.99         9.99        45.07        15.06        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P 
        0.99        28.96        19.96        37.05        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A093 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        17.95        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D 
       12.00         9.99         9.99        12.00         1.02        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       49.05        45.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04         0.95 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       73.91         5.72         1.48        73.05        99.35        40.57 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       86.66        90.71        60.92        87.12        26.04        74.14 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       33.04        19.33        14.66        32.45         6.48        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 
       14.83        22.19        24.13        25.05        14.99        16.57 
TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH 
       19.79        15.48        23.24        24.79        29.26        16.80 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV 
       14.53        19.33        14.96        11.44        17.42        18.67 
TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP 
       13.58        12.26         1.68         8.22         0.03        20.19 
TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
        1.12         1.32         2.30         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.33         0.62         2.96         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN 
        7.04         0.33         0.36         0.33         5.36         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
       12.33         0.30         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
        5.59        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 
       47.87        58.95        29.13        32.78        21.40        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       37.48        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       72.00        76.77        65.10        26.24        50.24        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27        99.25       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12H 
      108.03        90.58        98.27        64.04        57.30        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04H 
       14.73        82.62        61.87        70.39        17.79        24.79 
TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP 
        5.65        15.62        32.52        32.91        19.20       140.55 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TY 
       98.33         5.26        84.10       109.02        64.83        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
      107.24        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
      108.36       101.00       103.86        97.68        98.33        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV 
       86.07        93.90        17.23        37.81        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       86.53        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S 
      120.33        99.78       118.59         2.76       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27        77.69       105.30        32.58        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH 
       89.00        99.62        93.30        85.64       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        66.15        63.62        38.17        39.39        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       57.27        73.35        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
      143.38       281.29       275.87       129.57        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      146.50       112.37        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      129.07       255.68       212.25       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.48        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      157.41        97.48       188.68        79.63        18.35        21.47 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A1KF 
      206.86       129.70        28.27        68.94        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A409 
       73.51       170.17        37.87         7.07        85.35        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 
       63.09        81.44        39.55        39.16        70.22        81.63 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       84.13        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       21.70        61.68        72.23        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       53.95        45.57        49.94        49.05        41.75        44.02 
TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       89.06        45.83        77.98        23.44        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       13.91        78.28        17.26        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       38.47        67.86        70.88         4.41        15.68        14.30 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
       44.81        46.19        32.58        24.49        31.00        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        37.78        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       23.08        41.00        52.96        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       23.05         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
        7.36        67.50        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 
       12.00        49.58        17.69        25.81        31.53        89.16 
TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48       120.62       114.15        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       36.92        63.35        55.00        45.63        72.07       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 
       72.07        28.14        26.14        38.60        83.31       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ 
       18.64        23.51         9.63         5.26         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       21.76         9.44        11.93        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56         3.16        13.51         1.87        12.59 
TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.92         4.08        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
        0.16        12.03        10.42        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 
       20.25        12.53        12.36         9.67         0.03         9.50 
TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR 
       24.56        33.99        12.95        13.02        12.49        13.41 
TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       19.46        56.81        20.88        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB 
       14.17        13.48        21.14        14.17        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK 
       15.78        12.03        53.00        14.01        18.97        20.12 
TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XC 
       18.58        17.79        16.73        25.74        23.90        12.39 
TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM 
       17.16        15.22        14.73        21.80        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       55.30        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E 
       16.54        15.32        15.52         9.93        14.24        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
        4.80         1.61        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18        12.66        25.22 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J 
       17.29        20.71        21.63        18.21        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
        9.04        20.58        11.05        50.79        19.56        56.94 
TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       51.39        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       16.47        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        73.64        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       28.90        50.07       106.75       102.61         8.75        43.04 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       26.99        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       38.76        34.29        17.69        34.82        32.88        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       22.29        34.16        36.20        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.77        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG 
       45.01        32.09        40.24         1.12         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 
       39.09        38.37        41.03        41.72        40.50        20.12 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5UO 
       32.91        30.18        30.44        23.90        26.70        25.81 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       27.85        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        15.68        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       40.41        41.13        39.78        52.96        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       18.48        30.08         7.86        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
       13.94        10.52        14.43        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        10.16 
TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GM-A2D9 
       23.51        15.22        31.30        33.21         7.40        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DI 
      216.76        79.10        83.34        75.02        70.85        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
        2.60        62.47        11.84        11.57        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
        7.10        13.28        10.62        24.95        32.75        29.23 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP 
       25.05        17.06        15.32        14.70        14.47        22.26 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ 
        2.63        16.08        15.68         7.46        14.50        19.53 
TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       19.59        17.49        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       58.52        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P 
       65.62        41.92        42.77        26.04        17.36        14.07 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD 
       28.21        19.73        40.11         8.91        47.01        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZH 
       86.96         0.16         0.26         9.93        18.81        21.07 
TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
       20.68        19.27        13.84        18.87        17.39        17.26 
TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 
       13.94        17.03         3.81        66.84        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35        16.04       108.07       107.05 

  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                         0.33                          0.03 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                        245.1                         282.9 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                        29.98                         27.02 
[1] "0.3 - 245.1 (30.0)" "0.0 - 282.9 (27.0)"
[1] "hr=" "1.1"
D41V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 12(7P22.3) MUTATED        10        9        1        2        54
  DEL PEAK 12(7P22.3) WILD-TYPE      79       76        5        4       299
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 12(7P22.3) MUTATED          30         1         17          5
  DEL PEAK 12(7P22.3) WILD-TYPE       222         1        137         24
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 12(7P22.3) MUTATED            4        2         0       1
  DEL PEAK 12(7P22.3) WILD-TYPE         61       18         1      12
D41V3, multiclass
            clus
vv           DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  STAGE I                             10                            79
  STAGE IA                             9                            76
  STAGE IB                             1                             5
  STAGE II                             2                             4
  STAGE IIA                           54                           299
  STAGE IIB                           30                           222
  STAGE III                            1                             1
  STAGE IIIA                          17                           137
  STAGE IIIB                           5                            24
  STAGE IIIC                           4                            61
  STAGE IV                             2                            18
  STAGE TIS                            0                             1
  STAGE X                              1                            12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 12(7P22.3) MUTATED    27  91  14   5
  DEL PEAK 12(7P22.3) WILD-TYPE 249 533 122  35
D41V4, multiclass
    clus
vv   DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  T1                          27                           249
  T2                          91                           533
  T3                          14                           122
  T4                           5                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK 12(7P22.3) MUTATED    76  36  17   5
  DEL PEAK 12(7P22.3) WILD-TYPE 431 322 102  72
D41V5, multiclass
    clus
vv   DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  N0                          76                           431
  N1                          36                           322
  N2                          17                           102
  N3                           5                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V6, binary
                               cls
clus                              0   1
  DEL PEAK 12(7P22.3) MUTATED   122   3
  DEL PEAK 12(7P22.3) WILD-TYPE 767  19
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(7P22.3) MUTATED    122    3
  DEL PEAK 12(7P22.3) WILD-TYPE  767   19
   clus
vv  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  0                         122                           767
  1                           3                            19
[1] 2 2
[1] FALSE
D41V7, binary
                               cls
clus                              0   1
  DEL PEAK 12(7P22.3) MUTATED   136   1
  DEL PEAK 12(7P22.3) WILD-TYPE 932  11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(7P22.3) MUTATED    136    1
  DEL PEAK 12(7P22.3) WILD-TYPE  932   11
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  FEMALE                         136                           932
  MALE                             1                            11
[1] 2 2
[1] FALSE
D41V8, binary
                               cls
clus                              0   1
  DEL PEAK 12(7P22.3) MUTATED    54  69
  DEL PEAK 12(7P22.3) WILD-TYPE 375 449
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(7P22.3) MUTATED     54   69
  DEL PEAK 12(7P22.3) WILD-TYPE  375  449
     clus
vv    DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  NO                           54                           375
  YES                          69                           449
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK 12(7P22.3) MUTATED                            0
  DEL PEAK 12(7P22.3) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 12(7P22.3) MUTATED                             121
  DEL PEAK 12(7P22.3) WILD-TYPE                           649
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 12(7P22.3) MUTATED                                4
  DEL PEAK 12(7P22.3) WILD-TYPE                            196
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 12(7P22.3) MUTATED                     1                     2
  DEL PEAK 12(7P22.3) WILD-TYPE                   5                     7
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 12(7P22.3) MUTATED                                  4
  DEL PEAK 12(7P22.3) WILD-TYPE                               25
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 12(7P22.3) MUTATED                    0              5
  DEL PEAK 12(7P22.3) WILD-TYPE                 17             42
D41V9, multiclass
                                  clus
vv                                 DEL PEAK 12(7P22.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            121
  INFILTRATING LOBULAR CARCINOMA                             4
  MEDULLARY CARCINOMA                                        1
  METAPLASTIC CARCINOMA                                      2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           4
  MUCINOUS CARCINOMA                                         0
  OTHER  SPECIFY                                             5
                                  clus
vv                                 DEL PEAK 12(7P22.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              649
  INFILTRATING LOBULAR CARCINOMA                             196
  MEDULLARY CARCINOMA                                          5
  METAPLASTIC CARCINOMA                                        7
  MIXED HISTOLOGY (PLEASE SPECIFY)                            25
  MUCINOUS CARCINOMA                                          17
  OTHER  SPECIFY                                              42
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 12(7P22.3) MUTATED                                  0     8
  DEL PEAK 12(7P22.3) WILD-TYPE                                1    52
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 12(7P22.3) MUTATED                          25    86
  DEL PEAK 12(7P22.3) WILD-TYPE                       156   659
D41V11, multiclass
                                  clus
vv                                 DEL PEAK 12(7P22.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      8
  BLACK OR AFRICAN AMERICAN                                 25
  WHITE                                                     86
                                  clus
vv                                 DEL PEAK 12(7P22.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       52
  BLACK OR AFRICAN AMERICAN                                  156
  WHITE                                                      659
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V12, binary
                               cls
clus                              0   1
  DEL PEAK 12(7P22.3) MUTATED     4 109
  DEL PEAK 12(7P22.3) WILD-TYPE  35 766
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(7P22.3) MUTATED      4  109
  DEL PEAK 12(7P22.3) WILD-TYPE   35  766
                        clus
vv                       DEL PEAK 12(7P22.3) MUTATED
  HISPANIC OR LATINO                               4
  NOT HISPANIC OR LATINO                         109
                        clus
vv                       DEL PEAK 12(7P22.3) WILD-TYPE
  HISPANIC OR LATINO                                35
  NOT HISPANIC OR LATINO                           766
[1] 2 2
[1] FALSE

Clustering(42) Variable = DEL PEAK 13(7Q36.1) MUTATION ANALYSIS
D42V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 13(7Q36.1) MUTATED   171  26
  DEL PEAK 13(7Q36.1) WILD-TYPE 746 121
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          197                           867 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                           26                           121 
$`DEL PEAK 13(7Q36.1) MUTATED`
TCGA-5T-A9QA TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04U TCGA-A2-A04X TCGA-A2-A0CM 
        9.96        39.32        28.01        87.25        55.43        24.79 
TCGA-A2-A0CT TCGA-A2-A0D4 TCGA-A2-A0ET TCGA-A2-A0T7 TCGA-A2-A0YM TCGA-A2-A0YT 
       75.25        25.22        35.05        20.75        31.73        23.77 
TCGA-A2-A1FW TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A25C TCGA-A2-A4RW TCGA-A2-A4RX 
       17.36        20.25        19.20        17.19         7.30        24.39 
TCGA-A7-A0CD TCGA-A7-A0DC TCGA-A7-A13G TCGA-A7-A26G TCGA-A7-A3IZ TCGA-A7-A4SD 
       38.30        29.79        23.61        23.74        10.59        14.50 
TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06U TCGA-A8-A075 TCGA-A8-A076 
       10.29        10.42        13.02        29.03        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A08B TCGA-A8-A08P TCGA-A8-A08S 
        9.01        18.97        14.01        38.01        31.00        33.01 
TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A099 TCGA-A8-A09I TCGA-A8-A09Q TCGA-A8-A09W 
       43.00        30.97         9.99        45.07        25.02         0.99 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A2BK 
       12.00        19.04        13.02        27.02        22.95        73.05 
TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AM 
       26.04        33.04         0.62         1.78         9.96         0.16 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FY 
        0.33         0.33         7.04         0.33         0.36         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XS TCGA-AO-A03L TCGA-AO-A0J2 TCGA-AO-A0J7 
        0.33         0.33         0.33        80.28        32.78        20.32 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JM TCGA-AO-A12D TCGA-AO-A1KS TCGA-AQ-A04J 
       72.00        76.77        71.80        64.04         0.53        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AR 
      130.09        15.62        83.87       107.21       125.16        17.23 
TCGA-AR-A24H TCGA-AR-A24W TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LK TCGA-B6-A0I9 
      160.90        32.58        71.05        93.83        54.21        12.13 
TCGA-B6-A0IC TCGA-B6-A0IJ TCGA-B6-A0IO TCGA-B6-A0RS TCGA-B6-A0WY TCGA-B6-A3ZX 
       50.70       233.62       165.76       100.70       113.79        37.87 
TCGA-B6-A408 TCGA-BH-A0AV TCGA-BH-A0AZ TCGA-BH-A0B2 TCGA-BH-A0BG TCGA-BH-A0BJ 
       68.12        59.84        63.09        40.83        61.51        21.70 
TCGA-BH-A0BW TCGA-BH-A0DI TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E2 TCGA-BH-A0EB 
       77.95        29.98        70.88        16.27        14.30        24.49 
TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18L TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18U 
       44.81        32.91        26.66        55.63         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1FN TCGA-BH-A203 TCGA-BH-A42T 
       51.16        42.28        12.00        72.07        38.60        10.52 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A135 TCGA-C8-A138 
       23.51        11.93        12.66        12.56        12.92         4.08 
TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HM TCGA-C8-A26X TCGA-C8-A27B TCGA-D8-A143 
       10.92         0.16        12.33        12.36        14.43        14.17 
TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JU 
       16.50        18.15        18.90        53.00        20.09        14.70 
TCGA-D8-A1X5 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM 
       18.58        27.58        18.15        21.80        14.50        17.69 
TCGA-D8-A1XQ TCGA-D8-A1XU TCGA-E2-A109 TCGA-E2-A14N TCGA-E2-A14R TCGA-E2-A14W 
       16.41        12.99        46.59        47.15        38.60        32.02 
TCGA-E2-A15A TCGA-E2-A15H TCGA-E2-A15M TCGA-E2-A1B0 TCGA-E2-A1BC TCGA-E2-A1IE 
       23.34        12.92        11.05        53.62        16.47        77.65 
TCGA-E2-A1II TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LB TCGA-E9-A1N6 TCGA-E9-A1NA 
       33.70        60.36        73.64        75.81        22.29        36.56 
TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NH TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R6 
       39.55        35.77        18.94         2.56         6.12        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A22B TCGA-E9-A22E 
       48.23        40.24         6.58        21.27        38.37        41.72 
TCGA-E9-A244 TCGA-E9-A24A TCGA-E9-A3HO TCGA-E9-A54Y TCGA-E9-A5UP TCGA-EW-A1IY 
        0.69        24.56        38.07        23.84        26.40         8.48 
TCGA-EW-A1P0 TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3U0 
       41.13         6.15        13.94        25.91        22.09        17.49 
TCGA-EW-A6SA TCGA-EW-A6SD TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DD TCGA-GM-A2DH 
       16.77        33.21       109.87        59.57        75.02        72.10 
TCGA-GM-A2DI TCGA-LL-A5YP TCGA-LL-A7SZ TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A66I 
       85.15        14.79        19.53        36.36        24.72        23.47 
TCGA-OL-A66P TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA14 
       14.07        18.48        20.68        19.27        17.39 

$`DEL PEAK 13(7Q36.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
       48.36         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SP 
       47.24        20.88        13.68        31.79         7.96        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T 
       18.21       143.15        18.02        78.41       121.94        73.84 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO 
       63.12       101.98        36.13       136.73        99.12       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV 
       92.48        88.60       107.93        77.19         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
      107.93        56.81        67.33        34.55        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72        89.36        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FV 
       21.67        49.48        18.61        19.33        48.46        23.47 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       60.72        22.45        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       42.44        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       35.93        50.37        50.83        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       37.45        35.67        33.11        31.73        20.19        25.15 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J 
       29.56        31.36        24.26        23.80        21.73        20.61 
TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       22.32        11.34        10.29        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       11.97        14.93        13.74        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06P 
       12.10        10.72        11.05         9.37         8.75        13.02 
TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z 
        1.02        17.98        53.06        31.00        26.01         1.02 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       43.00        19.99        18.97        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
       10.98         8.98         7.99        24.99         9.99        45.07 
TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08F 
       15.06        36.95        13.02         0.99        28.96        33.01 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08R 
       19.96        12.00        37.05         9.99        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 
      112.08        40.01        33.01        17.95        41.98        12.00 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09K 
        9.99        12.00         1.02        50.04        49.05        29.98 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09X 
       33.07         1.02         8.98        19.04        15.02        14.01 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G 
       21.04         0.99        17.03        38.04         0.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
        5.72         1.48        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       60.92        87.12        74.14        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM 
        6.48        16.31        14.83        22.19        24.13        25.05 
TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       14.99        16.57        19.79        15.48        23.24        24.79 
TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V 
       29.26        16.80        14.53        19.33        14.96        11.44 
TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO 
       13.71        17.42        18.67        13.58        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS 
        8.22         0.03        20.19         1.12         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04D 
        0.33         0.33         0.23         0.33         2.96         1.71 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        7.36         7.46         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FX TCGA-AN-A0XL 
        7.00         7.59         7.17         6.90         0.33         5.36 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
       12.33         0.30         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
        5.59        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       47.87        58.95        29.13        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       37.48        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A124 
       65.10        26.24        50.24        62.04        55.33       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       99.25       108.72       106.78       108.03        90.58        98.27 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       57.30        48.36        41.62        40.57        14.73        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H3 
       61.87        70.39        17.79        24.79         5.65        32.52 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR 
        2.56        32.91        19.20       140.55        98.33         5.26 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY 
       84.10       109.02        75.22        98.93        64.83        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A1AI TCGA-AR-A1AJ 
      107.24        65.36       133.22       134.14       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      103.86        97.68        98.33        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       99.32        37.81        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       33.73        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27        77.69 
TCGA-AR-A24V TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
      105.30        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM 
       85.64       166.42        20.25        86.53        66.15        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN 
       38.17        39.39        40.54        57.27        73.35        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA 
       38.96        10.59        77.62       143.38       281.29       275.87 
TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM 
      129.57        65.72       146.50       112.37        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
       84.59       129.07       140.88       255.68        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
      234.28        81.17        78.02       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.48        89.46       282.90       157.41        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       79.63        18.35        21.47       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.88        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A409 
      139.17       170.17         7.07        85.35        70.16        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B0 
      103.63        71.15        62.93        20.45        25.55        81.44 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 
       39.55        39.16        70.22        81.63        84.13        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BL TCGA-BH-A0BM 
       37.22        32.02        18.21        43.53        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        53.95        45.57 
TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       49.94        49.05        41.75        44.02        89.06        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DL 
       45.83        77.98        23.44        38.01        13.91        78.28 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       17.26        15.65         3.22         2.56        38.47        67.86 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
        4.41        15.68         9.63        44.81        46.19        32.58 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
       20.38         5.85         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       42.35        23.05         4.90        35.93        20.12        90.84 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1EN 
       72.56        37.74        30.28        37.55        66.05        67.50 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       91.99       113.82        82.85        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB 
       25.81        31.53        89.16        97.48        24.62       120.62 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       55.00        45.63       144.59        72.07        28.14        26.14 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        10.65         6.44        20.12 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
      109.28        20.88        18.64         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.87        21.76         9.44        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y 
       11.77        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE 
        3.16        13.51         1.87        12.59         4.11        12.33 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HN TCGA-C8-A1HO 
       11.34        11.28        12.03        10.42        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       20.25        12.53        12.95         8.28         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        0.03         9.50        24.56        33.99        12.95        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       12.49        13.41        19.46        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        13.48        21.14        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI 
       17.49        55.50        15.78        12.03        14.01        18.97 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XC 
       13.32        17.79        16.73        25.74        23.90        12.39 
TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XR 
       17.16        15.22        14.73        19.92        55.30        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.31        16.64        15.16        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
        4.80         1.61        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18        12.66        25.22 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       43.00        34.42        27.52        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S 
       28.44        28.87        44.68        40.96        38.24        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       75.98        43.33        34.26        31.96        69.34        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       63.62        69.96        23.24        19.43        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       14.79        25.05        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O 
       18.21        55.63        53.92         9.04        20.58        50.79 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B1 
       19.56        56.94        14.07        51.39        76.57        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG 
       33.01        32.35        28.50        37.25        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.73        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LE TCGA-E2-A1LG 
       11.08        54.18        19.66        24.59        28.90        50.07 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        26.99        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 
       43.56         8.28        30.61        34.92        38.76        34.29 
TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       17.69        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       41.62        35.24        25.84         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R5 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A1RE 
       34.95         3.02        45.01        32.09         1.12        46.65 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 
       39.09        41.03        40.73        40.50        20.12        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 
        1.94         7.13        12.33        29.72         9.47        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.18        30.44        23.90        26.70         0.79        25.81 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       27.85        12.20        39.72        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX 
       16.57        15.68        28.77        25.94        22.82        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        39.78        52.96        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PE 
       18.48        30.08         7.86        18.90        19.99        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A3E8 
       14.43        34.55        19.96        55.00        52.73        34.03 
TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GI-A2C8 
       10.16        23.51        15.22        24.99        31.30         7.40 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DK TCGA-GM-A2DL 
      216.76        79.10        83.34        70.85        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      106.06       101.62        85.35       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       62.47        11.84        11.57        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ 
       17.06        15.32        14.70        14.47        22.26         2.63 
TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LL-A8F5 
       16.08        15.68         7.46        14.50        12.36        19.59 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       17.49        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RZ 
       31.99        58.62        40.08        34.92        28.87        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N 
       20.38        26.70        65.62        41.92        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       17.36        28.21        19.73        40.11         8.91        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
       64.21        86.96         0.16         0.26         9.93        18.81 
TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 
       21.07        13.84        18.87        17.26        13.94        17.03 
TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
        3.81        66.84        11.41        52.96        29.03        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                       233.62                        282.90 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                        23.77                         29.23 
[1] "0.2 - 233.6 (23.8)" "0.0 - 282.9 (29.2)"
[1] "hr=" "1.3"
D42V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 13(7Q36.1) MUTATED        17       12        0        1        72
  DEL PEAK 13(7Q36.1) WILD-TYPE      72       73        6        5       281
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 13(7Q36.1) MUTATED          47         1         32          5
  DEL PEAK 13(7Q36.1) WILD-TYPE       205         1        122         24
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 13(7Q36.1) MUTATED            8        2         0       2
  DEL PEAK 13(7Q36.1) WILD-TYPE         57       18         1      11
D42V3, multiclass
            clus
vv           DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  STAGE I                             17                            72
  STAGE IA                            12                            73
  STAGE IB                             0                             6
  STAGE II                             1                             5
  STAGE IIA                           72                           281
  STAGE IIB                           47                           205
  STAGE III                            1                             1
  STAGE IIIA                          32                           122
  STAGE IIIB                           5                            24
  STAGE IIIC                           8                            57
  STAGE IV                             2                            18
  STAGE TIS                            0                             1
  STAGE X                              2                            11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 13(7Q36.1) MUTATED    43 129  20   8
  DEL PEAK 13(7Q36.1) WILD-TYPE 233 495 116  32
D42V4, multiclass
    clus
vv   DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  T1                          43                           233
  T2                         129                           495
  T3                          20                           116
  T4                           8                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK 13(7Q36.1) MUTATED    96  61  28  11
  DEL PEAK 13(7Q36.1) WILD-TYPE 411 297  91  66
D42V5, multiclass
    clus
vv   DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  N0                          96                           411
  N1                          61                           297
  N2                          28                            91
  N3                          11                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V6, binary
                               cls
clus                              0   1
  DEL PEAK 13(7Q36.1) MUTATED   171   2
  DEL PEAK 13(7Q36.1) WILD-TYPE 718  20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(7Q36.1) MUTATED    171    2
  DEL PEAK 13(7Q36.1) WILD-TYPE  718   20
   clus
vv  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  0                         171                           718
  1                           2                            20
[1] 2 2
[1] FALSE
D42V7, binary
                               cls
clus                              0   1
  DEL PEAK 13(7Q36.1) MUTATED   197   3
  DEL PEAK 13(7Q36.1) WILD-TYPE 871   9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(7Q36.1) MUTATED    197    3
  DEL PEAK 13(7Q36.1) WILD-TYPE  871    9
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  FEMALE                         197                           871
  MALE                             3                             9
[1] 2 2
[1] FALSE
D42V8, binary
                               cls
clus                              0   1
  DEL PEAK 13(7Q36.1) MUTATED    79  98
  DEL PEAK 13(7Q36.1) WILD-TYPE 350 420
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(7Q36.1) MUTATED     79   98
  DEL PEAK 13(7Q36.1) WILD-TYPE  350  420
     clus
vv    DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  NO                           79                           350
  YES                          98                           420
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK 13(7Q36.1) MUTATED                            0
  DEL PEAK 13(7Q36.1) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 13(7Q36.1) MUTATED                             166
  DEL PEAK 13(7Q36.1) WILD-TYPE                           604
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 13(7Q36.1) MUTATED                               15
  DEL PEAK 13(7Q36.1) WILD-TYPE                            185
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 13(7Q36.1) MUTATED                     0                     2
  DEL PEAK 13(7Q36.1) WILD-TYPE                   6                     7
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 13(7Q36.1) MUTATED                                  7
  DEL PEAK 13(7Q36.1) WILD-TYPE                               22
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 13(7Q36.1) MUTATED                    0             10
  DEL PEAK 13(7Q36.1) WILD-TYPE                 17             37
D42V9, multiclass
                                  clus
vv                                 DEL PEAK 13(7Q36.1) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            166
  INFILTRATING LOBULAR CARCINOMA                            15
  MEDULLARY CARCINOMA                                        0
  METAPLASTIC CARCINOMA                                      2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           7
  MUCINOUS CARCINOMA                                         0
  OTHER  SPECIFY                                            10
                                  clus
vv                                 DEL PEAK 13(7Q36.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              604
  INFILTRATING LOBULAR CARCINOMA                             185
  MEDULLARY CARCINOMA                                          6
  METAPLASTIC CARCINOMA                                        7
  MIXED HISTOLOGY (PLEASE SPECIFY)                            22
  MUCINOUS CARCINOMA                                          17
  OTHER  SPECIFY                                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 13(7Q36.1) MUTATED                                  0    13
  DEL PEAK 13(7Q36.1) WILD-TYPE                                1    47
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 13(7Q36.1) MUTATED                          35   128
  DEL PEAK 13(7Q36.1) WILD-TYPE                       146   617
D42V11, multiclass
                                  clus
vv                                 DEL PEAK 13(7Q36.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     13
  BLACK OR AFRICAN AMERICAN                                 35
  WHITE                                                    128
                                  clus
vv                                 DEL PEAK 13(7Q36.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       47
  BLACK OR AFRICAN AMERICAN                                  146
  WHITE                                                      617
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V12, binary
                               cls
clus                              0   1
  DEL PEAK 13(7Q36.1) MUTATED     5 160
  DEL PEAK 13(7Q36.1) WILD-TYPE  34 715
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(7Q36.1) MUTATED      5  160
  DEL PEAK 13(7Q36.1) WILD-TYPE   34  715
                        clus
vv                       DEL PEAK 13(7Q36.1) MUTATED
  HISPANIC OR LATINO                               5
  NOT HISPANIC OR LATINO                         160
                        clus
vv                       DEL PEAK 13(7Q36.1) WILD-TYPE
  HISPANIC OR LATINO                                34
  NOT HISPANIC OR LATINO                           715
[1] 2 2
[1] FALSE

Clustering(43) Variable = DEL PEAK 14(8P23.2) MUTATION ANALYSIS
D43V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 14(8P23.2) MUTATED   462  91
  DEL PEAK 14(8P23.2) WILD-TYPE 455  56
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          553                           511 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                           91                            56 
$`DEL PEAK 14(8P23.2) MUTATED`
TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SN 
       11.44         9.96        14.27        20.88        31.79        39.32 
TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T 
       28.01        19.20       143.15        18.02        78.41        73.84 
TCGA-A2-A04U TCGA-A2-A04X TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CU 
       87.25        55.43        99.12       114.81        92.48         5.19 
TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ER 
      107.93        67.33        34.55        25.22        79.76        74.40 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0SV TCGA-A2-A0SX 
       34.29        31.82        61.94        24.72        27.12        50.43 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YH TCGA-A2-A0YJ 
       17.52        17.13        49.84        20.75        21.67        18.61 
TCGA-A2-A0YK TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G4 
       19.33        31.73        23.77        17.36        60.72        19.56 
TCGA-A2-A259 TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
       52.47        18.15       105.34        33.93        91.07        29.98 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CJ 
       35.93        50.37         7.30        21.90        35.31        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26G 
       37.45        35.67        29.79        31.73        20.19        23.74 
TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A426 
       23.80        20.61        22.32        10.59        11.28        11.97 
TCGA-A7-A4SA TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV 
       14.93        21.17        17.92        14.73        12.10        10.29 
TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
        9.37         8.75        13.02        13.02         1.02        17.98 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       53.06        29.03        31.00         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07O 
        9.01        43.00        19.99        18.97        14.01         9.99 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 
       10.98         7.99         9.99        15.06        36.95        13.02 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       33.01        19.96        37.05        31.00        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       33.01       112.08        43.00        40.01        33.01        30.97 
TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
       12.00         9.99        29.98        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A0A7 TCGA-AC-A23H TCGA-AC-A2FO TCGA-AC-A2QJ 
        8.98        19.04         0.99         5.72        74.14        14.66 
TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3YI TCGA-AC-A5EH TCGA-AC-A7VB 
       22.19        14.99        16.57        23.24        16.80         8.22 
TCGA-AC-A8OP TCGA-AN-A03Y TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
       20.19         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        9.96         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        6.90         7.04         0.33         0.33         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
        5.36         0.33        12.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A0J2 
        5.33        66.77        81.63        95.70        68.75        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J9 TCGA-AO-A0JB 
       21.40        52.18        26.04        37.48        53.03        50.70 
TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A126 TCGA-AO-A129 
       76.77        26.24        71.80       115.27       108.72       108.03 
TCGA-AO-A12D TCGA-AO-A12G TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KT 
       64.04        41.62        82.62        61.87        70.39        17.79 
TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TS 
      130.09         5.65        15.62        32.91       140.55        84.10 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 
      109.02        75.22        98.93        64.83        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AM 
      133.22        83.87       134.14       101.00       103.86        98.33 
TCGA-AR-A1AN TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AW TCGA-AR-A1AX 
       96.00        93.90        17.23        37.81        86.53        86.43 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24U 
      160.90        50.89        94.22       104.28        97.84        77.69 
TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A255 
      105.30        98.66        89.00        99.62        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LO TCGA-AR-A2LR 
       93.83       166.42        54.21        66.15        39.39        57.27 
TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I9 TCGA-B6-A0IA 
       33.30        10.59        77.62       143.38        12.13       275.87 
TCGA-B6-A0IG TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IQ 
      146.50       233.62        18.77       127.33        84.59       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RO 
      255.68        68.45       212.25        81.17        78.02       162.05 
TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
      100.70       282.90       157.41        97.48       188.68        79.63 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
       18.35        21.47       113.79        68.94        58.88        43.59 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
      101.52       139.17        85.35        70.16        68.12        18.84 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B6 
       71.15        59.84        25.55        40.83        39.16        81.63 
TCGA-BH-A0B7 TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BT 
       84.13        61.51        74.89        75.48        76.60        45.57 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DI TCGA-BH-A0DL 
       49.94        77.95        41.75        90.97        29.98        78.28 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
       14.30         9.63        44.81        24.49        31.00        24.43 
TCGA-BH-A0H0 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HU 
       15.16        24.56        23.08        26.50         5.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W5 
       51.32        27.25        50.79         5.59        23.93        42.35 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       23.05        32.91        35.93        20.12        90.84        26.66 
TCGA-BH-A18N TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       37.74        66.05         7.36        51.16        67.50        91.99 
TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 
       55.69        17.69        25.81        31.53        89.16        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       24.62       120.62       114.15        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 
       36.92        72.07        72.07        28.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-BH-AB28 
       57.83       130.16        20.88        23.51        18.87         9.44 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A131 
       12.66        12.66        12.66        48.53        12.56        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HG TCGA-C8-A1HI 
        1.87        12.59        12.92         4.08        11.34        11.28 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26W 
       12.03        10.42        12.33        12.95        12.33        12.53 
TCGA-C8-A26X TCGA-C8-A273 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M8 
       12.36         9.67         9.50        24.56        14.43        12.95 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z 
       13.02        12.49        13.41        19.46        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.25        13.97        14.17        13.48        14.17        17.49 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ 
       55.50        15.78        18.15        53.00        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1JT TCGA-D8-A1X6 
       20.12        20.09        19.40        21.01        13.32        17.79 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XD TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM 
       25.74        23.90        17.16        21.80        19.92        17.69 
TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XZ TCGA-D8-A1Y0 
       16.41        16.31        16.64        12.99        15.32        15.52 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27L TCGA-D8-A27M 
       14.24        14.14        16.04        13.05        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27W TCGA-D8-A3Z6 TCGA-D8-A73U TCGA-E2-A105 
        4.80        10.09        12.26        18.51        16.18        43.00 
TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14S 
       27.52        40.41        40.11        47.15        40.96        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       75.98        43.33        32.02        31.96        69.34        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15E 
       63.62        69.96        14.79        23.34        22.82        20.71 
TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15R TCGA-E2-A15S 
       21.63        12.92        53.92         9.04        56.94        14.07 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B5 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF 
       76.57        53.62        32.35        16.47        77.65        37.41 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L7 
       33.73        33.70        22.19        60.99        54.18        60.36 
TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LI 
       73.64        24.59        75.81        28.90        50.07       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A56Z TCGA-E2-A574 TCGA-E2-A576 
        8.75        43.04        26.99         8.28        38.76        34.29 
TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1ND 
       17.69        22.29        34.16        36.20        39.55        41.62 
TCGA-E9-A1NF TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1R2 TCGA-E9-A1R5 TCGA-E9-A1R7 
       35.24        18.94         9.86        34.95         3.02        48.23 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A228 TCGA-E9-A229 
       46.65         6.58        46.59        34.45        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A244 TCGA-E9-A248 
       39.09        38.37        41.03        41.72         0.69         1.94 
TCGA-E9-A2JS TCGA-E9-A3QA TCGA-E9-A54Y TCGA-E9-A5UP TCGA-EW-A1IX TCGA-EW-A1J5 
       29.72        30.18        23.84        26.40        39.72        15.68 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        22.82        29.85        40.41        41.13 
TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A1PE 
       52.96        18.48         7.86        18.90        13.94        10.52 
TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3U0 
       14.43        19.96        55.00        52.73        25.91        17.49 
TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SD TCGA-GM-A2D9 TCGA-GM-A2DA 
       23.51        16.77        24.99        33.21        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3XL 
       79.10        75.02        70.85        85.35       110.50        69.30 
TCGA-GM-A5PV TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LD-A7W6 
       13.55        62.47        11.84        11.57         7.10        13.28 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A50Y TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A5YP 
       24.95        32.75        25.05        15.32        14.47        14.79 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A7T0 TCGA-LL-A8F5 
        2.63        16.08        15.68         7.46        12.36        19.59 
TCGA-LL-A9Q3 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       17.49        58.52        36.36        24.72        22.32        20.38 
TCGA-OL-A66J TCGA-OL-A66P TCGA-OL-A6VR TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        14.07        40.11        47.01        64.21        86.96 
TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA17 TCGA-UL-AAZ6 
       21.07        19.27        18.87        17.39        13.94        17.03 
TCGA-UU-A93S TCGA-V7-A7HQ TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
        3.81        66.84        52.96        29.03        15.35        16.04 
TCGA-Z7-A8R6 
      107.05 

$`DEL PEAK 14(8P23.2) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        48.56        48.36 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SJ 
        8.52        14.37        43.43        48.10        47.24        13.68 
TCGA-A1-A0SM TCGA-A1-A0SQ TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y 
        7.96        18.21       121.94        63.12       101.98        36.13 
TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      136.73        24.79        88.60       107.93        77.19        75.25 
TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN 
       98.99        56.81        33.76        61.58       101.72        89.36 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0ST 
       80.28       118.45        72.00        35.05        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 
       54.64        44.88        44.28         8.38        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YI TCGA-A2-A0YL TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       49.48        48.46        23.47        22.45        20.25        19.20 
TCGA-A2-A1G6 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3KC 
       16.47       107.70        42.44        17.19        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RX 
       39.65        32.75        56.28        47.31        50.83        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG 
       21.30        23.21        26.96        21.14        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0DB TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E 
       35.47        33.11        25.15        23.61        29.56        31.36 
TCGA-A7-A26F TCGA-A7-A26I TCGA-A7-A3IY TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       24.26        21.73        11.34        10.29        13.41        14.70 
TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VX TCGA-A8-A06Y 
       13.74        14.50        10.72        11.05        10.42        26.01 
TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07Z 
       18.97        12.00        32.05         8.98        24.99        45.07 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A093 
        0.99        38.01        28.96        12.00         9.99        17.95 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E 
       41.98         9.99        12.00         1.02        50.04        49.05 
TCGA-A8-A09I TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       45.07        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       13.02        21.04        27.02        17.03        38.04         0.95 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       22.95        73.91         1.48        73.05        99.35        40.57 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QH 
       86.66        90.71        60.92        87.12        26.04        33.04 
TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QQ 
       19.33        32.45         6.48        16.31        14.83        24.13 
TCGA-AC-A3TM TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EI 
       25.05        19.79        15.48        24.79        29.26        14.53 
TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV 
       19.33        14.96        11.44        13.71        17.42        18.67 
TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR 
       13.58        12.26         1.68         0.03         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A0AK TCGA-AN-A0AL 
        2.30         0.33         0.23         0.33         7.36         7.46 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FW 
        5.65         7.96         7.00         7.59         7.17         0.36 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03T 
        0.30         0.33         5.59        80.28        61.35        47.87 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JC 
       58.95        29.13        20.32        22.36        21.53        50.86 
TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A125 
       72.00        65.10        50.24        62.04        55.33        99.25 
TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12H 
      106.78        90.58        98.27        57.30        48.36        40.57 
TCGA-AO-A1KO TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A1H3 TCGA-AQ-A54N 
       14.73         0.53        24.79        26.93        32.52         2.56 
TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TZ TCGA-AR-A0U4 TCGA-AR-A1AH 
       19.20        98.33         5.26       107.24       107.21       125.16 
TCGA-AR-A1AI TCGA-AR-A1AL TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AU TCGA-AR-A1AV 
      108.36        97.68        86.07        99.32        94.29        61.28 
TCGA-AR-A1AY TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R 
       33.73       120.33        99.78       118.59         2.76       112.77 
TCGA-AR-A24T TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A2LH TCGA-AR-A2LJ 
      105.27        32.58        98.76        93.30        20.25        86.53 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QP TCGA-B6-A0I5 
       63.62        38.17        40.54        73.35        38.96       281.29 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IO TCGA-B6-A0IP 
      129.57        50.70        65.72       112.37       165.76       129.07 
TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0WZ 
      234.28       263.28       102.77       140.48        89.46       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A3ZX 
      129.70       245.10        28.27        73.51       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B0 
        7.07       103.63        62.93        20.45        63.09        81.44 
TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       39.55        70.22        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS 
       43.53        21.70        61.68        72.23        74.14        53.95 
TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       49.05        44.02        89.06        45.83        77.98        23.44 
TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       38.01        13.91        17.26        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       38.47        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 
       46.19        32.58        30.35        10.78        37.78        53.26 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       41.00        52.96        20.38         2.50        13.61        36.85 
TCGA-BH-A0W4 TCGA-BH-A0W7 TCGA-BH-A18G TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18Q 
       24.95        44.81         4.90        72.56        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18U TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       37.55        51.39       113.82        82.85        42.28        12.00 
TCGA-BH-A1EX TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A202 
       49.58        63.35        55.00        45.63       144.59        26.14 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A5IZ 
       10.65         6.44        20.12        10.52       109.28        18.64 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-C8-A12V TCGA-C8-A130 
        9.63         5.26         9.70        21.76        12.66         3.16 
TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A26V TCGA-C8-A26Y 
        4.11        12.33        10.92         0.16        20.25        12.95 
TCGA-C8-A26Z TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A3M7 TCGA-D8-A141 TCGA-D8-A146 
        8.28         9.53         0.03        33.99        20.58        21.14 
TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JN 
       19.20        16.50        18.90        12.03        14.01        20.38 
TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1XA TCGA-D8-A1XB 
       12.20        14.70        18.58        16.73        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XO TCGA-D8-A1XR 
       12.39        15.22        14.73        14.50        55.30        15.85 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-D8-A27E TCGA-D8-A27G 
       15.16        43.04        16.54         9.93        17.42        13.45 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 
       14.43        48.03         1.61        13.08        12.53        33.37 
TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10B 
       21.67        12.66        25.22        34.42        46.59        37.51 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14V 
       28.44        28.87        44.68        38.24        38.60        34.26 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15D 
       23.24        19.43        21.04        23.87        25.05        17.29 
TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P 
       18.21        55.63        20.58        11.05        50.79        19.56 
TCGA-E2-A15T TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IG 
       51.39        87.22        33.01        28.50        37.25        70.36 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IU TCGA-E2-A1L9 TCGA-E2-A1LH 
       28.44        59.18         3.88        11.08        19.66       106.75 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E9-A1N3 TCGA-E9-A1N4 
       34.55        43.56        30.61        34.92        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 
       36.82        36.56        35.77        25.84        24.82        28.27 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        2.56         6.12        11.15        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A22G TCGA-E9-A22H 
        1.12        21.27        47.64        32.05        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT 
       20.12        38.99         7.13        24.56        12.33         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL 
       38.07        32.91        30.44        23.90        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       25.81        27.85        12.20         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1OX TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 
       13.25        16.57        29.95        39.78        29.82        23.11 
TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PG TCGA-EW-A2FW TCGA-EW-A3E8 
       30.08        19.99         6.15        34.55        22.09        34.03 
TCGA-EW-A423 TCGA-EW-A6S9 TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DC 
       10.16        15.22        31.30         7.40       109.87        83.34 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PX TCGA-HN-A2NL 
       38.20        43.73        66.38        72.03        18.12         2.60 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A9QF TCGA-LL-A442 TCGA-LL-A5YL TCGA-LL-A5YN 
       21.24        13.22        10.62        29.23        17.06        14.70 
TCGA-LL-A6FP TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       22.26        14.50        19.53        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       36.30        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       26.70        23.47        41.92        42.77        26.04        17.36 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       28.21        19.73         8.91         0.16         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA15 TCGA-W8-A86G 
       18.81        18.48        20.68        13.84        17.26        11.41 
TCGA-Z7-A8R5 
      108.07 

  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                       282.90                        281.29 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                        27.25                         28.21 
[1] "0.2 - 282.9 (27.2)" "0.0 - 281.3 (28.2)"
[1] "hr=" "1.4"
D43V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 14(8P23.2) MUTATED        47       46        3        2       177
  DEL PEAK 14(8P23.2) WILD-TYPE      42       39        3        4       176
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 14(8P23.2) MUTATED         132         1         82         15
  DEL PEAK 14(8P23.2) WILD-TYPE       120         1         72         14
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 14(8P23.2) MUTATED           31       11         0       9
  DEL PEAK 14(8P23.2) WILD-TYPE         34        9         1       4
D43V3, multiclass
            clus
vv           DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  STAGE I                             47                            42
  STAGE IA                            46                            39
  STAGE IB                             3                             3
  STAGE II                             2                             4
  STAGE IIA                          177                           176
  STAGE IIB                          132                           120
  STAGE III                            1                             1
  STAGE IIIA                          82                            72
  STAGE IIIB                          15                            14
  STAGE IIIC                          31                            34
  STAGE IV                            11                             9
  STAGE TIS                            0                             1
  STAGE X                              9                             4
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 14(8P23.2) MUTATED   157 324  52  23
  DEL PEAK 14(8P23.2) WILD-TYPE 119 300  84  17
D43V4, multiclass
    clus
vv   DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  T1                         157                           119
  T2                         324                           300
  T3                          52                            84
  T4                          23                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK 14(8P23.2) MUTATED   247 186  74  37
  DEL PEAK 14(8P23.2) WILD-TYPE 260 172  45  40
D43V5, multiclass
    clus
vv   DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  N0                         247                           260
  N1                         186                           172
  N2                          74                            45
  N3                          37                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V6, binary
                               cls
clus                              0   1
  DEL PEAK 14(8P23.2) MUTATED   472  11
  DEL PEAK 14(8P23.2) WILD-TYPE 417  11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(8P23.2) MUTATED    472   11
  DEL PEAK 14(8P23.2) WILD-TYPE  417   11
   clus
vv  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  0                         472                           417
  1                          11                            11
[1] 2 2
[1] FALSE
D43V7, binary
                               cls
clus                              0   1
  DEL PEAK 14(8P23.2) MUTATED   550   8
  DEL PEAK 14(8P23.2) WILD-TYPE 518   4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(8P23.2) MUTATED    550    8
  DEL PEAK 14(8P23.2) WILD-TYPE  518    4
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  FEMALE                         550                           518
  MALE                             8                             4
[1] 2 2
[1] FALSE
D43V8, binary
                               cls
clus                              0   1
  DEL PEAK 14(8P23.2) MUTATED   230 265
  DEL PEAK 14(8P23.2) WILD-TYPE 199 253
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(8P23.2) MUTATED    230  265
  DEL PEAK 14(8P23.2) WILD-TYPE  199  253
     clus
vv    DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  NO                          230                           199
  YES                         265                           253
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK 14(8P23.2) MUTATED                            1
  DEL PEAK 14(8P23.2) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 14(8P23.2) MUTATED                             446
  DEL PEAK 14(8P23.2) WILD-TYPE                           324
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 14(8P23.2) MUTATED                               64
  DEL PEAK 14(8P23.2) WILD-TYPE                            136
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 14(8P23.2) MUTATED                     3                     3
  DEL PEAK 14(8P23.2) WILD-TYPE                   3                     6
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 14(8P23.2) MUTATED                                 10
  DEL PEAK 14(8P23.2) WILD-TYPE                               19
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 14(8P23.2) MUTATED                    4             26
  DEL PEAK 14(8P23.2) WILD-TYPE                 13             21
D43V9, multiclass
                                  clus
vv                                 DEL PEAK 14(8P23.2) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            446
  INFILTRATING LOBULAR CARCINOMA                            64
  MEDULLARY CARCINOMA                                        3
  METAPLASTIC CARCINOMA                                      3
  MIXED HISTOLOGY (PLEASE SPECIFY)                          10
  MUCINOUS CARCINOMA                                         4
  OTHER  SPECIFY                                            26
                                  clus
vv                                 DEL PEAK 14(8P23.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              324
  INFILTRATING LOBULAR CARCINOMA                             136
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        6
  MIXED HISTOLOGY (PLEASE SPECIFY)                            19
  MUCINOUS CARCINOMA                                          13
  OTHER  SPECIFY                                              21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 14(8P23.2) MUTATED                                  1    41
  DEL PEAK 14(8P23.2) WILD-TYPE                                0    19
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 14(8P23.2) MUTATED                         105   357
  DEL PEAK 14(8P23.2) WILD-TYPE                        76   388
D43V11, multiclass
                                  clus
vv                                 DEL PEAK 14(8P23.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     41
  BLACK OR AFRICAN AMERICAN                                105
  WHITE                                                    357
                                  clus
vv                                 DEL PEAK 14(8P23.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       19
  BLACK OR AFRICAN AMERICAN                                   76
  WHITE                                                      388
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V12, binary
                               cls
clus                              0   1
  DEL PEAK 14(8P23.2) MUTATED    19 453
  DEL PEAK 14(8P23.2) WILD-TYPE  20 422
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(8P23.2) MUTATED     19  453
  DEL PEAK 14(8P23.2) WILD-TYPE   20  422
                        clus
vv                       DEL PEAK 14(8P23.2) MUTATED
  HISPANIC OR LATINO                              19
  NOT HISPANIC OR LATINO                         453
                        clus
vv                       DEL PEAK 14(8P23.2) WILD-TYPE
  HISPANIC OR LATINO                                20
  NOT HISPANIC OR LATINO                           422
[1] 2 2
[1] FALSE

Clustering(44) Variable = DEL PEAK 15(8P11.21) MUTATION ANALYSIS
D44V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 15(8P11.21) MUTATED   168  30
  DEL PEAK 15(8P11.21) WILD-TYPE 749 117
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           198                            866 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                            30                            117 
$`DEL PEAK 15(8P11.21) MUTATED`
TCGA-3C-AALJ TCGA-A1-A0SF TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A2-A04P TCGA-A2-A04Q 
       42.81        48.10        39.32        19.20        18.02        78.41 
TCGA-A2-A04U TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0D1 TCGA-A2-A0EQ 
       87.25        55.43        36.13        99.12        34.55        79.76 
TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0T1 TCGA-A2-A0YH TCGA-A2-A0YT TCGA-A2-A1FW 
       27.12        50.43        17.13        21.67        23.77        17.36 
TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4S3 TCGA-A7-A0D9 
       52.47        42.44        35.93        50.37        21.90        37.45 
TCGA-A7-A13D TCGA-A7-A26G TCGA-A7-A4SA TCGA-A7-A4SE TCGA-A7-A6VV TCGA-A7-A6VY 
       31.73        23.74        14.93        21.17        10.29         8.75 
TCGA-A8-A06T TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07R TCGA-A8-A07S 
       53.06         1.02        17.03         9.01         8.98         7.99 
TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08X TCGA-A8-A097 TCGA-A8-A099 
       19.96        37.05        31.00        43.00        12.00         9.99 
TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09T TCGA-A8-A0A7 TCGA-AC-A23H 
       45.07        29.98         1.02        19.04         0.99         5.72 
TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A5EH TCGA-AC-A5XU 
       33.04        14.66        14.99        16.57        16.80        14.96 
TCGA-AC-A8OP TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AJ 
       20.19         0.23         0.62         2.96         1.78         9.96 
TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV 
        0.16         0.33         6.44         7.59         7.04         0.33 
TCGA-AO-A03V TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J9 TCGA-AO-A0JE TCGA-AO-A0JG 
       29.13        52.18        26.04        53.03        76.77        26.24 
TCGA-AO-A124 TCGA-AO-A12D TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AR-A0TT 
      115.27        64.04        17.79         5.65        15.62       109.02 
TCGA-AR-A0TV TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A24K 
       75.22        55.86        65.36       101.00       103.86        50.89 
TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A255 TCGA-B6-A0RH 
       97.84        77.69        89.00        85.64        71.05       212.25 
TCGA-B6-A0WY TCGA-B6-A1KN TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0B7 TCGA-BH-A0BG 
      113.79       139.17        62.93        59.84        84.13        61.51 
TCGA-BH-A0BR TCGA-BH-A0BW TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0RX TCGA-BH-A0W3 
       76.60        77.95        24.49        31.00         5.59        23.93 
TCGA-BH-A18F TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18U TCGA-BH-A18V 
       32.91        20.12        90.84        26.66        51.39        51.16 
TCGA-BH-A1ES TCGA-BH-A1EY TCGA-BH-A1F8 TCGA-BH-A1FE TCGA-BH-A1FN TCGA-BH-A1FU 
      113.82        17.69        24.62        74.73        72.07        72.07 
TCGA-BH-A203 TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Z 
       38.60        23.51        18.87        12.66        12.66        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HL TCGA-C8-A8HQ 
        3.16        13.51        12.92         4.08        10.42        12.49 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JG 
       20.88        13.25        13.48        14.17        17.49        53.00 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1XL TCGA-D8-A1XQ 
       20.09        20.12        21.01        18.58        19.92        16.41 
TCGA-D8-A1XU TCGA-D8-A27L TCGA-D8-A3Z6 TCGA-D8-A73U TCGA-E2-A108 TCGA-E2-A14T 
       12.99        16.41        18.51        16.18        27.52        75.98 
TCGA-E2-A14V TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A15H 
       34.26        69.34        18.51        63.62        69.96        12.92 
TCGA-E2-A15J TCGA-E2-A1B5 TCGA-E2-A1BC TCGA-E2-A1IF TCGA-E2-A1IH TCGA-E2-A1IO 
       53.92        32.35        16.47        37.41        33.73        60.99 
TCGA-E2-A1L8 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LL TCGA-E9-A1N8 
       73.64        75.81        28.90       106.75        43.04        34.16 
TCGA-E9-A1N9 TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1R5 
       36.20        41.62        35.24        18.94         9.86         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A22B TCGA-E9-A22D 
       48.23        21.27        46.59        34.45        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A248 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1PE TCGA-EW-A1PH 
       41.72         1.94        25.94        22.82        10.52        19.96 
TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GM-A3XL TCGA-GM-A5PV 
       55.00        25.91        17.49        23.51        69.30        13.55 
TCGA-JL-A3YW TCGA-LL-A50Y TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A73Z TCGA-OL-A5RZ 
       11.84        25.05        14.70        14.47         7.46        22.32 
TCGA-OL-A5S0 TCGA-PE-A5DD TCGA-PE-A5DE TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB44 
       20.38        64.21        86.96        17.03         3.81        29.03 

$`DEL PEAK 15(8P11.21) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14       131.67        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        14.37        43.43        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SQ 
       20.88        13.68        31.79         7.96        28.01        18.21 
TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A0CK 
      143.15       121.94        73.84        63.12       101.98       136.73 
TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       24.79       114.81        92.48        88.60       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 
       75.25         5.19        98.99       107.93        56.81        67.33 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO 
       33.76        61.58        25.22       101.72        89.36        80.28 
TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV 
      118.45        74.40        72.00        35.05        34.29        31.82 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW 
       61.94        24.72        63.29        99.19        54.64        44.88 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.52         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.90        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 
       23.47        60.72        22.45        20.25        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
       16.47       107.70        17.19        18.15       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV 
       36.23        39.65        33.93        91.07        29.98        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       56.28        47.31        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        38.30        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13E 
       35.47        30.61        35.67        33.11        29.79        20.19 
TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H 
       25.15        23.61        29.56        31.36        24.26        23.80 
TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       21.73        20.61        22.32        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SD 
       11.28        13.41        14.70        11.97        13.74        14.50 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW 
       17.92        14.73        12.10        10.72        11.05         9.37 
TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06U 
       10.42        13.02        13.02         1.02        17.98        29.03 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
       31.00        26.01        53.98        43.00        19.99        18.97 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 
       24.99         9.99        45.07        15.06        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08L 
        0.99        38.01        28.96        33.01        12.00         9.99 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 
       31.00         0.99        33.01       112.08        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C 
       30.97        17.95        41.98         9.99        12.00         1.02 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09V 
       50.04        49.05        33.07        25.02         8.98        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04         0.95        22.95        73.91 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
        1.48        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A3BB 
       60.92        87.12        26.04        74.14        19.33        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM 
        6.48        16.31        14.83        22.19        24.13        25.05 
TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EI 
       19.79        15.48        23.24        24.79        29.26        14.53 
TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW 
       19.33        11.44        13.71        17.42        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR 
       12.26         1.68         8.22         0.03         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A04D TCGA-AN-A0AK 
        2.30         0.33         0.33         0.33         1.71         7.36 
TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        7.46         0.33         0.33         5.65         7.96         7.00 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.17         6.90         0.36         0.33         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        47.87        58.95 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0JA 
       32.78        21.40        37.48        20.32        22.36        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ 
       50.70        50.86        72.00        65.10        50.24        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       55.33        71.80        99.25       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       90.58        98.27        57.30        48.36        41.62        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       14.73        82.62        61.87        70.39         0.53        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 
       26.93       130.09        32.52         2.56        32.91        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TW TCGA-AR-A0TX 
      140.55        98.33         5.26        84.10        98.93        64.83 
TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
      107.24       133.22        83.87       134.14       107.21       125.16 
TCGA-AR-A1AI TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      108.36        97.68        98.33        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        17.23        37.81        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       86.43        33.73       160.90        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24V 
      118.59         2.76       104.28       112.77       105.27       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A256 
       32.58        98.76        98.66        99.62        93.30        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      166.42        20.25        86.53        54.21        66.15        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN 
       38.17        39.39        40.54        57.27        73.35        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 
       38.96        10.59        77.62       143.38       281.29        12.13 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.72       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      140.88       255.68        68.45       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT 
      263.28       162.05       102.77       140.48       100.70        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      282.90       157.41        97.48       188.68        79.63        18.35 
TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
       21.47       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A3ZX 
       58.88        43.59       101.52        73.51       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        70.16        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 
       71.15        20.45        25.55        63.09        81.44        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.55        39.16        70.22        81.63        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       32.02        18.21        43.53        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       72.23        75.48        74.14        53.95        45.57        49.94 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       49.05        41.75        44.02        89.06        90.97        45.83 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        23.44        38.01        29.98        13.91        78.28 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       17.26        15.65         3.22         2.56        38.47        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       44.81        46.19        32.58        24.43        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        37.78        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       52.96        26.50        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W4 
       36.85        12.89        51.32        27.25        50.79        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18M 
       42.35        44.81        23.05         4.90        35.93        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       67.50        91.99        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB 
       49.58        25.81        31.53        89.16        97.48       120.62 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
      114.15        33.17       122.89        36.92        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 
       45.63       144.59        28.14        26.14        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 
       20.88        18.64         9.63         5.26         9.70        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
        9.44        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A132 TCGA-C8-A134 
       12.66        12.66        12.66        48.53         1.87        12.59 
TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
        4.11        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95         8.28         9.67         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.50        24.56        14.43        33.99        12.95        13.02 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       13.41        19.46        56.81        20.58        13.97        14.17 
TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       21.14        19.20        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JM 
       18.90        12.03        14.01        18.97        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 
       20.38        12.20        13.32        14.70        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       25.74        23.90        27.58        18.15        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO 
       15.22        14.73        21.80        14.50        17.69        55.30 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       15.85        16.31        16.64        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27M 
       16.04        13.45        13.05        14.43        48.03        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
        4.80         1.61        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 
       33.37        21.67        12.66        25.22        43.00        34.42 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       46.59        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       43.33        32.02        31.96        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       23.87        14.79        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15K TCGA-E2-A15L 
       20.71        21.63        18.21        55.63         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       11.05        50.79        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B6 TCGA-E2-A1BD 
       76.57        53.62        87.22        33.01        28.50        37.25 
TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       77.65        70.36        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       22.19        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX 
       50.07       102.61         8.75        26.99        34.55        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU 
        8.28        30.61        34.92        38.76        34.29        17.69 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NC 
       34.82        32.88        36.82        22.29        36.56        39.55 
TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       35.77        25.84        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
        6.12        11.15        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.65         6.58        47.64        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       39.09        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       32.91        30.18        30.44        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX 
        0.79        25.81        26.40        27.85        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
        8.48        18.21        18.90        13.25        16.57        15.68 
TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       28.77        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       52.96        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A1PG 
       18.90        19.99         6.15        13.94        14.43        34.55 
TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A6S9 TCGA-EW-A6SA 
       52.73        22.09        34.03        10.16        15.22        16.77 
TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       24.99        31.30        33.21         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH 
      216.76        79.10        83.34        75.02        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       85.15        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PX 
      110.50        38.20        43.73        66.38        72.03        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
        2.60        62.47        11.57        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A5YL 
       13.28        10.62        24.95        32.75        29.23        17.06 
TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y 
       15.32        14.79        22.26         2.63        16.08        15.68 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       14.50        19.53        12.36        19.59        17.49        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H 
       40.08        34.92        36.36        28.87        24.72        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       23.47        65.62        41.92        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       14.07        28.21        19.73        40.11         8.91        47.01 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH 
        0.16         0.26         9.93        18.81        18.48        21.07 
TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
       20.68        19.27        13.84        18.87        17.39        17.26 
TCGA-S3-AA17 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 TCGA-XX-A89A 
       13.94        66.84        11.41        52.96        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                        212.25                         282.90 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                         25.48                          28.44 
[1] "0.2 - 212.2 (25.5)" "0.0 - 282.9 (28.4)"
[1] "hr=" "1.4"
D44V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 15(8P11.21) MUTATED        19       18        0        0        67
  DEL PEAK 15(8P11.21) WILD-TYPE      70       67        6        6       286
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 15(8P11.21) MUTATED          42         0         27          6
  DEL PEAK 15(8P11.21) WILD-TYPE       210         2        127         23
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 15(8P11.21) MUTATED           11        7         0       2
  DEL PEAK 15(8P11.21) WILD-TYPE         54       13         1      11
D44V3, multiclass
            clus
vv           DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  STAGE I                              19                             70
  STAGE IA                             18                             67
  STAGE IB                              0                              6
  STAGE II                              0                              6
  STAGE IIA                            67                            286
  STAGE IIB                            42                            210
  STAGE III                             0                              2
  STAGE IIIA                           27                            127
  STAGE IIIB                            6                             23
  STAGE IIIC                           11                             54
  STAGE IV                              7                             13
  STAGE TIS                             0                              1
  STAGE X                               2                             11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 15(8P11.21) MUTATED    52 117  19  12
  DEL PEAK 15(8P11.21) WILD-TYPE 224 507 117  28
D44V4, multiclass
    clus
vv   DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  T1                           52                            224
  T2                          117                            507
  T3                           19                            117
  T4                           12                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 15(8P11.21) MUTATED   101  55  26  16
  DEL PEAK 15(8P11.21) WILD-TYPE 406 303  93  61
D44V5, multiclass
    clus
vv   DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  N0                          101                            406
  N1                           55                            303
  N2                           26                             93
  N3                           16                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V6, binary
                                cls
clus                               0   1
  DEL PEAK 15(8P11.21) MUTATED   168   7
  DEL PEAK 15(8P11.21) WILD-TYPE 721  15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(8P11.21) MUTATED    168    7
  DEL PEAK 15(8P11.21) WILD-TYPE  721   15
   clus
vv  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  0                          168                            721
  1                            7                             15
[1] 2 2
[1] FALSE
D44V7, binary
                                cls
clus                               0   1
  DEL PEAK 15(8P11.21) MUTATED   200   0
  DEL PEAK 15(8P11.21) WILD-TYPE 868  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(8P11.21) MUTATED    200    0
  DEL PEAK 15(8P11.21) WILD-TYPE  868   12
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  FEMALE                          200                            868
  MALE                              0                             12
[1] 2 2
[1] FALSE
D44V8, binary
                                cls
clus                               0   1
  DEL PEAK 15(8P11.21) MUTATED    80  95
  DEL PEAK 15(8P11.21) WILD-TYPE 349 423
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(8P11.21) MUTATED     80   95
  DEL PEAK 15(8P11.21) WILD-TYPE  349  423
     clus
vv    DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  NO                            80                            349
  YES                           95                            423
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 15(8P11.21) MUTATED                            0
  DEL PEAK 15(8P11.21) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 15(8P11.21) MUTATED                             166
  DEL PEAK 15(8P11.21) WILD-TYPE                           604
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 15(8P11.21) MUTATED                               20
  DEL PEAK 15(8P11.21) WILD-TYPE                            180
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 15(8P11.21) MUTATED                     0                     2
  DEL PEAK 15(8P11.21) WILD-TYPE                   6                     7
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 15(8P11.21) MUTATED                                  5
  DEL PEAK 15(8P11.21) WILD-TYPE                               24
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 15(8P11.21) MUTATED                    1              6
  DEL PEAK 15(8P11.21) WILD-TYPE                 16             41
D44V9, multiclass
                                  clus
vv                                 DEL PEAK 15(8P11.21) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             166
  INFILTRATING LOBULAR CARCINOMA                             20
  MEDULLARY CARCINOMA                                         0
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            5
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                              6
                                  clus
vv                                 DEL PEAK 15(8P11.21) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               604
  INFILTRATING LOBULAR CARCINOMA                              180
  MEDULLARY CARCINOMA                                           6
  METAPLASTIC CARCINOMA                                         7
  MIXED HISTOLOGY (PLEASE SPECIFY)                             24
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 15(8P11.21) MUTATED                                  1    11
  DEL PEAK 15(8P11.21) WILD-TYPE                                0    49
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 15(8P11.21) MUTATED                          39   128
  DEL PEAK 15(8P11.21) WILD-TYPE                       142   617
D44V11, multiclass
                                  clus
vv                                 DEL PEAK 15(8P11.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      11
  BLACK OR AFRICAN AMERICAN                                  39
  WHITE                                                     128
                                  clus
vv                                 DEL PEAK 15(8P11.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        49
  BLACK OR AFRICAN AMERICAN                                   142
  WHITE                                                       617
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V12, binary
                                cls
clus                               0   1
  DEL PEAK 15(8P11.21) MUTATED     6 160
  DEL PEAK 15(8P11.21) WILD-TYPE  33 715
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(8P11.21) MUTATED      6  160
  DEL PEAK 15(8P11.21) WILD-TYPE   33  715
                        clus
vv                       DEL PEAK 15(8P11.21) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                          160
                        clus
vv                       DEL PEAK 15(8P11.21) WILD-TYPE
  HISPANIC OR LATINO                                 33
  NOT HISPANIC OR LATINO                            715
[1] 2 2
[1] FALSE

Clustering(45) Variable = DEL PEAK 16(9P23) MUTATION ANALYSIS
D45V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 16(9P23) MUTATED   270  50
  DEL PEAK 16(9P23) WILD-TYPE 647  97
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        320                         744 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                         50                          97 
$`DEL PEAK 16(9P23) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-A1-A0SD TCGA-A1-A0SJ TCGA-A1-A0SO TCGA-A2-A0CL 
      129.14       131.67        14.37        13.68        28.01        99.12 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ET 
       75.25         5.19        80.28        79.76        74.40        35.05 
TCGA-A2-A0EU TCGA-A2-A0EY TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T0 
       34.29        63.29        54.64        27.12        44.88        17.52 
TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX 
       20.75        18.21        21.90        23.77        17.36        60.72 
TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A25E TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XY 
       19.20        42.44       105.34        32.75        47.31        35.93 
TCGA-A2-A3Y0 TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DC 
       50.83        26.96        21.90        30.61        37.45        29.79 
TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A4SA TCGA-A7-A4SB 
       31.73        25.15        23.74        22.32        14.93        13.74 
TCGA-A7-A4SF TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z 
       17.92        13.02        17.98        29.03        31.00         1.02 
TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07W TCGA-A8-A08G 
       17.03         9.01        18.97        32.05         9.99        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E 
       33.01        12.00         9.99        12.00         1.02        49.05 
TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       45.07        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
        0.99        19.04        21.04         0.99        27.02        17.03 
TCGA-AC-A2BM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A5EH TCGA-AC-A5XU 
       99.35        74.14        33.04        19.33        16.80        14.96 
TCGA-AC-A62V TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AN-A03X TCGA-AN-A03Y 
       11.44        13.58         0.03        20.19         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        0.23         0.62         2.96         9.96         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FZ 
        0.16         0.33         7.96         0.33         0.36         0.33 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33        12.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0JA 
       66.77        81.63        29.13        21.40        26.04        21.53 
TCGA-AO-A0JB TCGA-AO-A0JE TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04L 
       50.70        76.77        61.87         0.53        17.79       130.09 
TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS 
        5.65        15.62        32.91        98.33         5.26        84.10 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A0U3 
       75.22        98.93        55.86       107.24        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AP TCGA-AR-A1AW TCGA-AR-A24N TCGA-AR-A24R 
      125.16       108.36        93.90        86.53        99.78       112.77 
TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A252 TCGA-AR-A255 
       97.84       105.30        32.58        98.66        93.30        71.05 
TCGA-AR-A2LK TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0RO 
       54.21        12.13       129.57        18.77       165.76       162.05 
TCGA-B6-A0RP TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A401 TCGA-B6-A408 TCGA-BH-A0AU 
      102.77        79.63       113.79        85.35        68.12        62.93 
TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0BF 
       20.45        63.09        39.55        70.22        84.13        43.53 
TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C3 TCGA-BH-A0C7 
       74.89        76.60        49.94        77.95        89.06        90.97 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0E2 TCGA-BH-A0E6 
       29.98        13.91        78.28         3.22        14.30         9.63 
TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HY 
       24.49        30.35        23.08        41.00        52.96        50.79 
TCGA-BH-A0W3 TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       23.93        90.84        26.66        66.05         7.36        51.39 
TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F8 TCGA-BH-A1FM 
       67.50       113.82        17.69        31.53        24.62        45.63 
TCGA-BH-A1FU TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A42T TCGA-BH-A8FZ TCGA-BH-AB28 
       72.07        38.60        57.83        10.52        18.87         9.44 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12X 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A137 TCGA-C8-A1HG TCGA-C8-A1HK 
        3.16        13.51         1.87         4.11        11.34        12.03 
TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26V TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A27A 
       10.42        12.33        20.25        12.95         9.67        24.56 
TCGA-C8-A8HP TCGA-C8-A8HR TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A143 TCGA-D8-A145 
       13.02        13.41        56.81        20.88        14.17        13.48 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JJ 
       17.49        16.50        15.78        12.03        53.00        20.09 
TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X9 TCGA-D8-A1XA 
       20.12        19.40        18.58        17.79        23.90        27.58 
TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XY TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27N 
       16.31        12.99        16.54        14.14        16.04         4.80 
TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A109 TCGA-E2-A14O TCGA-E2-A14T TCGA-E2-A14W 
       10.09        12.26        46.59        44.68        75.98        32.02 
TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H 
       18.51        69.96        23.34        20.71        21.63        12.92 
TCGA-E2-A15S TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1LA TCGA-E2-A1LB 
       14.07        60.99        54.18        60.36        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A56Z TCGA-E2-A573 
       28.90       106.75         8.75        43.04         8.28        34.92 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 
       36.20        36.56        35.24         9.86        24.82        34.95 
TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE 
        6.12        11.15        48.23        32.09        40.24        46.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E 
        6.58        21.27        46.59        39.09        38.37        41.72 
TCGA-E9-A247 TCGA-E9-A2JS TCGA-E9-A54X TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       38.99        29.72        23.90         0.79        25.81        26.40 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P4 
       28.77        25.94        29.85        40.41        52.96        29.82 
TCGA-EW-A1P5 TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       23.11        18.90        13.94        55.00        52.73        25.91 
TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SB TCGA-EW-A6SD TCGA-GM-A2DB TCGA-HN-A2NL 
       10.16        23.51        24.99        33.21        79.10         2.60 
TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LL-A441 TCGA-LL-A6FQ TCGA-LL-A7SZ TCGA-LL-A7T0 
       11.57         7.10        32.75         2.63        19.53        12.36 
TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5RZ TCGA-OL-A66N TCGA-OL-A66P TCGA-PE-A5DC 
       22.39        36.30        22.32        26.04        14.07        47.01 
TCGA-S3-A6ZH TCGA-S3-AA17 
       21.07        13.94 

$`DEL PEAK 16(9P23) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
       42.81        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
        8.52        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N 
       31.79         7.96        39.32        19.20        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04V 
       18.02        78.41       121.94        73.84        87.25        63.12 
TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO 
      101.98        55.43        36.13       136.73        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CW 
       92.48        88.60       107.93        77.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       56.81        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW 
      101.72        89.36       118.45        72.00        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 
       24.72        99.19        50.43        44.28        17.13         8.38 
TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD 
       49.84        20.52        17.46        18.90        32.55        25.28 
TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       50.47        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 
       31.73        23.47        22.45        20.25        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC 
       52.47       107.70        17.19        18.15        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XW TCGA-A2-A3XZ 
       39.65        33.93        91.07        29.98        56.28        50.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CD 
        7.30        24.39        21.30        23.21        21.14        38.30 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13E 
       35.31        34.29        35.47        35.67        33.11        20.19 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       23.61        29.56        31.36        24.26        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        11.34        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV 
       14.70        11.97        14.50        21.17        14.73        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A07B 
       13.02         1.02        53.06        26.01        53.98        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P 
       19.99        18.97        14.01        12.00         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 
        8.98         7.99        24.99        45.07        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08T 
       13.02         0.99        38.01        28.96        33.01       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 
       43.00        40.01        33.01        30.97        17.95        41.98 
TCGA-A8-A099 TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 
        9.99        50.04        29.98        15.02        14.01        12.00 
TCGA-A8-A0A4 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       13.02        38.04         0.95        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
        1.48        73.05        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       87.12        26.04        14.66        32.45         6.48        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 
       14.83        22.19        24.13        25.05        14.99        16.57 
TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EI 
       19.79        15.48        23.24        24.79        29.26        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO 
       19.33        13.71        17.42        18.67        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A04C 
        8.22         1.12         1.32         2.30         0.33         1.78 
TCGA-AN-A04D TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK 
        1.71         0.33         0.33         6.44         5.65         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FX TCGA-AN-A0FY 
        7.59         7.17         6.90         7.04         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03M 
        5.36         0.30         0.33         0.33         0.33        61.35 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J4 
       95.70        68.75        47.87        58.95        32.78        52.18 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JD 
       37.48        20.32        22.36        53.03        50.86        72.00 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       65.10        26.24        50.24        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27        99.25       108.72       106.78       108.03        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        64.04        57.30        48.36        41.62        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A1H3 
       14.73        82.62        70.39        24.79        26.93        32.52 
TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0U0 
        2.56        19.20       140.55       109.02        64.83        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U4 TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      133.22       107.21       101.00       103.86        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU 
       96.00        86.07        99.32        17.23        37.81        94.29 
TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       61.28        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24T TCGA-AR-A24U 
      120.33       118.59         2.76       104.28       105.27        77.69 
TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A256 TCGA-AR-A2LE 
       98.76        89.00        99.62        85.64        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        66.15        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       40.54        57.27        73.35        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE 
       77.62       143.38       281.29       275.87        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP 
      146.50       112.37       233.62       127.33        84.59       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      140.88       255.68        68.45       212.25       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU 
       78.02       263.28       140.48       100.70        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ 
      157.41        97.48       188.68        18.35        21.47       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.88        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A402 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AY 
       70.16        18.84       103.63        71.15        59.84        25.55 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA 
       81.44        40.83        39.16        81.63        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       32.02        18.21        61.51        21.70        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BZ TCGA-BH-A0C0 
       75.48        74.14        53.95        45.57        49.05        41.75 
TCGA-BH-A0C1 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DO 
       44.02        45.83        77.98        23.44        38.01        17.26 
TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
       15.65         2.56        38.47        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE 
        4.41        15.68        44.81        46.19        32.58        31.00 
TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       24.43        10.78        15.16        37.78        53.26        24.56 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       26.50        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 
       12.89        51.32        27.25         5.59        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18V 
       72.56        37.74        30.28        55.63        37.55        51.16 
TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
       91.99        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        89.16        97.48       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN 
       74.73       122.89        36.92        63.35        55.00        72.07 
TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O 
      144.59        28.14        26.14        83.31       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
        6.44        20.12       109.28        20.88        18.64        23.51 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-C8-A12L TCGA-C8-A12M 
        9.63         5.26         9.70        21.76        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12V TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A134 TCGA-C8-A135 
       11.77        12.66        48.53        12.56        12.59        12.92 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HN 
        4.08        12.33        10.92        11.28         0.16        12.95 
TCGA-C8-A1HO TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A274 TCGA-C8-A275 
       12.33        12.53        12.36         8.28         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-C8-A9FZ 
        9.50        14.43        33.99        12.95        12.49        19.46 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 
       13.25        20.58        13.97        21.14        19.20        14.17 
TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL 
       55.50        18.15        18.90        14.01        18.97        20.09 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X7 
       20.38        21.01        12.20        13.32        14.70        16.73 
TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG 
       25.74        18.15        12.39        17.16        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.80        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 
       15.85        16.64        15.16        43.04        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
        9.93        14.24        17.42        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V 
       48.03        16.41        13.48         1.61        13.08        12.53 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18        12.66        25.22 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       43.00        34.42        27.52        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.44        28.87        47.15        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 
       33.17        43.33        34.26        31.96        69.34        63.62 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 
       23.24        19.43        21.04        23.87        14.79        25.05 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       22.82        17.29        18.21        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T 
       20.58        11.05        50.79        19.56        56.94        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       16.47        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU 
       33.70        28.44        59.18         3.88        22.19        11.08 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A2P5 TCGA-E2-A2P6 
       73.64        19.66        50.07       102.61        26.99        34.55 
TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
       43.56        30.61        38.76        34.29        17.69        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1ND 
       32.88        36.82        22.29        34.16        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1R5 
       35.77        25.84        18.94        28.27         2.56         3.02 
TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       45.01         1.12        47.64        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       37.74        41.03        40.73        40.50        20.12         0.69 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3HO 
        1.94         7.13        24.56        12.33         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A6HE 
       32.91        30.18        30.44        23.84        26.70        27.85 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 
       16.57        15.68        22.82        29.95        41.13        39.78 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PE 
       18.48        30.08         7.86        19.99         6.15        10.52 
TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       14.43        34.55        19.96        22.09        34.03        17.49 
TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       15.22        16.77        31.30         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        83.34        75.02        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       86.96       115.69       106.06       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 
       18.12        62.47        11.84        21.24        13.22        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
       10.62        24.95        29.23        25.05        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Y 
       14.70        14.47        14.79        22.26        16.08        15.68 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 
        7.46        14.50        19.59        17.49        27.91         2.10 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       58.52        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       28.87        24.72        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       41.92        42.77        17.36        28.21        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
        8.91        64.21        86.96         0.16         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 
       18.81        18.48        20.68        19.27        13.84        18.87 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G 
       17.39        17.26        17.03         3.81        66.84        11.41 
TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        29.03        15.35        16.04       108.07       107.05 

  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                       0.03                        0.03 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                     165.76                      282.90 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                     24.605                      29.965 
[1] "0.0 - 165.8 (24.6)" "0.0 - 282.9 (30.0)"
[1] "hr=" "1.5"
D45V2, continuous
                             vv
clus                          STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 16(9P23) MUTATED        21       19        1        1        98
  DEL PEAK 16(9P23) WILD-TYPE      68       66        5        5       255
                             vv
clus                          STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 16(9P23) MUTATED          71         1         62         16
  DEL PEAK 16(9P23) WILD-TYPE       181         1         92         13
                             vv
clus                          STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 16(9P23) MUTATED           19       10         0       4
  DEL PEAK 16(9P23) WILD-TYPE         46       10         1       9
D45V3, multiclass
            clus
vv           DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  STAGE I                           21                          68
  STAGE IA                          19                          66
  STAGE IB                           1                           5
  STAGE II                           1                           5
  STAGE IIA                         98                         255
  STAGE IIB                         71                         181
  STAGE III                          1                           1
  STAGE IIIA                        62                          92
  STAGE IIIB                        16                          13
  STAGE IIIC                        19                          46
  STAGE IV                          10                          10
  STAGE TIS                          0                           1
  STAGE X                            4                           9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           T1  T2  T3  T4
  DEL PEAK 16(9P23) MUTATED    60 207  38  19
  DEL PEAK 16(9P23) WILD-TYPE 216 417  98  21
D45V4, multiclass
    clus
vv   DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  T1                        60                         216
  T2                       207                         417
  T3                        38                          98
  T4                        19                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                           N0  N1  N2  N3
  DEL PEAK 16(9P23) MUTATED   137 103  55  24
  DEL PEAK 16(9P23) WILD-TYPE 370 255  64  53
D45V5, multiclass
    clus
vv   DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  N0                       137                         370
  N1                       103                         255
  N2                        55                          64
  N3                        24                          53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V6, binary
                             cls
clus                            0   1
  DEL PEAK 16(9P23) MUTATED   274  11
  DEL PEAK 16(9P23) WILD-TYPE 615  11
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(9P23) MUTATED    274   11
  DEL PEAK 16(9P23) WILD-TYPE  615   11
   clus
vv  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  0                       274                         615
  1                        11                          11
[1] 2 2
[1] FALSE
D45V7, binary
                             cls
clus                            0   1
  DEL PEAK 16(9P23) MUTATED   319   6
  DEL PEAK 16(9P23) WILD-TYPE 749   6
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(9P23) MUTATED    319    6
  DEL PEAK 16(9P23) WILD-TYPE  749    6
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  FEMALE                       319                         749
  MALE                           6                           6
[1] 2 2
[1] FALSE
D45V8, binary
                             cls
clus                            0   1
  DEL PEAK 16(9P23) MUTATED   136 153
  DEL PEAK 16(9P23) WILD-TYPE 293 365
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(9P23) MUTATED    136  153
  DEL PEAK 16(9P23) WILD-TYPE  293  365
     clus
vv    DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  NO                        136                         293
  YES                       153                         365
[1] 2 2
[1] FALSE
                             vv
clus                          INFILTRATING CARCINOMA NOS
  DEL PEAK 16(9P23) MUTATED                            0
  DEL PEAK 16(9P23) WILD-TYPE                          1
                             vv
clus                          INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 16(9P23) MUTATED                             269
  DEL PEAK 16(9P23) WILD-TYPE                           501
                             vv
clus                          INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 16(9P23) MUTATED                               26
  DEL PEAK 16(9P23) WILD-TYPE                            174
                             vv
clus                          MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 16(9P23) MUTATED                     3                     5
  DEL PEAK 16(9P23) WILD-TYPE                   3                     4
                             vv
clus                          MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 16(9P23) MUTATED                                  9
  DEL PEAK 16(9P23) WILD-TYPE                               20
                             vv
clus                          MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 16(9P23) MUTATED                    5              8
  DEL PEAK 16(9P23) WILD-TYPE                 12             39
D45V9, multiclass
                                  clus
vv                                 DEL PEAK 16(9P23) MUTATED
  INFILTRATING CARCINOMA NOS                               0
  INFILTRATING DUCTAL CARCINOMA                          269
  INFILTRATING LOBULAR CARCINOMA                          26
  MEDULLARY CARCINOMA                                      3
  METAPLASTIC CARCINOMA                                    5
  MIXED HISTOLOGY (PLEASE SPECIFY)                         9
  MUCINOUS CARCINOMA                                       5
  OTHER  SPECIFY                                           8
                                  clus
vv                                 DEL PEAK 16(9P23) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            501
  INFILTRATING LOBULAR CARCINOMA                           174
  MEDULLARY CARCINOMA                                        3
  METAPLASTIC CARCINOMA                                      4
  MIXED HISTOLOGY (PLEASE SPECIFY)                          20
  MUCINOUS CARCINOMA                                        12
  OTHER  SPECIFY                                            39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V10, continuous
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 16(9P23) MUTATED                                  0    23
  DEL PEAK 16(9P23) WILD-TYPE                                1    37
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 16(9P23) MUTATED                          51   210
  DEL PEAK 16(9P23) WILD-TYPE                       130   535
D45V11, multiclass
                                  clus
vv                                 DEL PEAK 16(9P23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                   23
  BLACK OR AFRICAN AMERICAN                               51
  WHITE                                                  210
                                  clus
vv                                 DEL PEAK 16(9P23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     37
  BLACK OR AFRICAN AMERICAN                                130
  WHITE                                                    535
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V12, binary
                             cls
clus                            0   1
  DEL PEAK 16(9P23) MUTATED    11 258
  DEL PEAK 16(9P23) WILD-TYPE  28 617
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(9P23) MUTATED     11  258
  DEL PEAK 16(9P23) WILD-TYPE   28  617
                        clus
vv                       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  HISPANIC OR LATINO                            11                          28
  NOT HISPANIC OR LATINO                       258                         617
[1] 2 2
[1] FALSE

Clustering(46) Variable = DEL PEAK 17(9P21.3) MUTATION ANALYSIS
D46V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 17(9P21.3) MUTATED   309  51
  DEL PEAK 17(9P21.3) WILD-TYPE 608  96
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          360                           704 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                           51                            96 
$`DEL PEAK 17(9P21.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SO TCGA-A2-A04P 
      129.14       131.67        48.10        13.68        28.01        18.02 
TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A0CT TCGA-A2-A0D0 TCGA-A2-A0EO TCGA-A2-A0EQ 
       78.41        73.84        75.25        67.33        80.28        79.76 
TCGA-A2-A0ER TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T0 
       74.40        35.05        34.29        27.12        44.88        17.52 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX 
       18.21        50.47        21.90        23.77        17.36        60.72 
TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A25E TCGA-A2-A3XV TCGA-A2-A3XX TCGA-A2-A3XY 
       19.20        42.44       105.34        32.75        47.31        35.93 
TCGA-A2-A3Y0 TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA 
       50.83        26.96        21.90        30.61        37.45        35.67 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A4SA 
       29.79        31.73        25.15        23.74        22.32        14.93 
TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06Q 
       13.74        17.92        12.10         8.75        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
       17.98        29.03        31.00        26.01         1.02        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07W TCGA-A8-A08F 
       53.98         9.01        18.97        32.05         9.99        33.01 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       19.96        12.00        37.05        31.00        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08Z TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       33.01        40.01        12.00         9.99         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        1.02        49.05        45.07        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A7 
        8.98        19.04         0.99        19.04        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A2BM TCGA-AC-A2FF TCGA-AC-A2QH TCGA-AC-A2QI 
       27.02        17.03        99.35        90.71        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A6IW 
       14.66        16.80        14.53        14.96        11.44        13.58 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 
        0.03        20.19         0.33         0.33         0.23         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        2.96         1.78         9.96         7.36         7.46         0.16 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FZ 
        0.33         6.44         7.96         0.33         0.36         0.33 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33        12.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03N TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       66.77        29.13        21.40        52.18        26.04        37.48 
TCGA-AO-A0JA TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
       21.53        72.00        76.77        61.87        70.39         0.53 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54O 
       17.79        24.79       130.09         5.65        15.62        32.91 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY 
       98.33         5.26        84.10        75.22        98.93        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
      107.24       133.22        83.87       134.14       107.21       125.16 
TCGA-AR-A1AI TCGA-AR-A1AP TCGA-AR-A1AW TCGA-AR-A24K TCGA-AR-A24N TCGA-AR-A24Q 
      108.36        93.90        86.53        50.89        99.78       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A251 
      112.77        97.84       105.30        32.58        98.66        99.62 
TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A2LK TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IJ 
       93.30        71.05        54.21        12.13       129.57       233.62 
TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0WV TCGA-B6-A0WW 
       18.77       165.76       162.05       102.77        79.63        18.35 
TCGA-B6-A0WY TCGA-B6-A401 TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AZ 
      113.79        85.35        68.12        62.93        20.45        63.09 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0BF TCGA-BH-A0BG 
       39.55        39.16        70.22        84.13        43.53        61.51 
TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C3 
       74.89        75.48        76.60        49.94        77.95        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0E6 
       90.97        29.98        13.91        78.28         3.22         9.63 
TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HY 
       24.49        30.35        23.08        41.00        52.96        50.79 
TCGA-BH-A0W3 TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       23.93        90.84        26.66         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F8 TCGA-BH-A1FM 
       67.50       113.82        17.69        31.53        24.62        45.63 
TCGA-BH-A1FU TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A42T TCGA-BH-A6R9 TCGA-BH-AB28 
       72.07        57.83       130.16        10.52         5.26         9.44 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.93        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        12.66        12.56         3.16        13.51         1.87 
TCGA-C8-A137 TCGA-C8-A1HG TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26V TCGA-C8-A26Y 
        4.11        11.34        10.42        12.33        20.25        12.95 
TCGA-C8-A273 TCGA-C8-A27B TCGA-C8-A8HP TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y 
        9.67        14.43        13.02        13.41        19.46        56.81 
TCGA-D8-A13Z TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC 
       20.88        14.17        13.48        17.49        55.50        15.78 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       18.90        12.03        53.00        18.97        20.09        20.12 
TCGA-D8-A1JM TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XD 
       19.40        18.58        17.79        23.90        27.58        17.16 
TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XY TCGA-D8-A1Y3 
       16.41        16.31        16.64        12.99        16.54        14.14 
TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A109 
       16.04        13.05         4.80        10.09        12.26        46.59 
TCGA-E2-A10A TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14T TCGA-E2-A14W TCGA-E2-A14Z 
       40.41        44.68        40.96        75.98        32.02        18.51 
TCGA-E2-A152 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15S 
       69.96        23.34        20.71        21.63        12.92        14.07 
TCGA-E2-A1IO TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LK 
       60.99        24.59        75.81        28.90       106.75         8.75 
TCGA-E2-A1LL TCGA-E2-A56Z TCGA-E2-A573 TCGA-E9-A1N3 TCGA-E9-A1N9 TCGA-E9-A1NA 
       43.04         8.28        34.92        34.82        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R4 
       39.55        35.24         9.86        24.82        34.95         6.12 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF 
       11.15        48.23        32.09        40.24        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G 
       21.27        46.59        39.09        38.37        41.72        40.73 
TCGA-E9-A247 TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1J6 
       38.99        30.18        23.90        25.81        26.40        28.77 
TCGA-EW-A1OV TCGA-EW-A1OY TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 
       25.94        29.85        52.96        29.82        23.11         7.86 
TCGA-EW-A1PA TCGA-EW-A1PD TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A423 
       18.90        13.94        55.00        52.73        25.91        10.16 
TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-EW-A6SD TCGA-GI-A2C9 TCGA-GM-A2DB 
       23.51        15.22        24.99        33.21       109.87        79.10 
TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A441 TCGA-LL-A6FQ 
        2.60        11.57         7.10        10.62        32.75         2.63 
TCGA-LL-A73Y TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5RZ 
       15.68        19.53        12.36        22.39        36.30        22.32 
TCGA-OL-A66H TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A97C TCGA-PE-A5DC TCGA-S3-A6ZH 
       26.70        26.04        14.07         8.91        47.01        21.07 

$`DEL PEAK 17(9P21.3) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
       42.81        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
        8.52        14.37        43.43        14.27        47.24        20.88 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N 
       31.79         7.96        39.32        19.20        18.21       143.15 
TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      121.94        87.25        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
      136.73        99.12        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
      107.93        77.19         5.19        98.99       107.93        56.81 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72        89.36 
TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
      118.45        72.00        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 
       99.19        54.64        50.43        44.28        17.13         8.38 
TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC 
       49.84        20.52        17.46        18.90        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       25.28        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 
       31.73        23.47        22.45        20.25        19.56        16.47 
TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC 
       52.47       107.70        17.19        18.15        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XW TCGA-A2-A3XZ 
       39.65        33.93        91.07        29.98        56.28        50.37 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CD 
        7.30        24.39        21.30        23.21        21.14        38.30 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0DB TCGA-A7-A13E TCGA-A7-A13G 
       35.31        34.29        35.47        33.11        20.19        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J 
       29.56        31.36        24.26        23.80        21.73        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       11.34        10.59        10.29        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX 
       11.97        14.50        21.17        14.73        10.72        11.05 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A07B 
       10.29         9.37        10.42        13.02        53.06        43.00 
TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P 
       19.99        18.97        14.01        12.00         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 
        8.98         7.99        24.99        45.07        15.06        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08L TCGA-A8-A08T 
       13.02         0.99        38.01        28.96         9.99       112.08 
TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A09D 
       43.00        33.01        30.97        17.95        41.98        50.04 
TCGA-A8-A09K TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0AD 
       29.98        15.02        14.01        12.00        13.02        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
        0.95        22.95        73.91         5.72         1.48        73.05 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       40.57        86.66        60.92        87.12        26.04        74.14 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ 
       32.45         6.48        16.31        14.83        22.19        24.13 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI 
       25.05        14.99        16.57        19.79        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV 
       24.79        29.26        19.33        13.71        17.42        18.67 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS 
       12.26         1.68         8.22         1.12         1.32         2.30 
TCGA-AN-A046 TCGA-AN-A04D TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FK 
        0.33         1.71         0.33         0.33         5.65         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FX TCGA-AN-A0FY 
        7.59         7.17         6.90         7.04         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03M 
        5.36         0.30         0.33         0.33         0.33        61.35 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J2 
       81.63        95.70        68.75        47.87        58.95        32.78 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JF 
       20.32        22.36        53.03        50.70        50.86        65.10 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       26.24        50.24        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       99.25       108.72       106.78       108.03        90.58        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       64.04        57.30        48.36        41.62        40.57        14.73 
TCGA-AO-A1KP TCGA-AQ-A04J TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP 
       82.62        26.93        32.52         2.56        19.20       140.55 
TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      109.02        64.83        65.36       101.00       103.86        97.68 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS 
       98.33        96.00        86.07        99.32        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L 
       94.29        61.28        86.43        33.73       160.90        94.22 
TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24X 
      120.33       118.59         2.76       105.27        77.69        98.76 
TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       89.00        85.64        93.83       166.42        20.25        86.53 
TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR 
       66.15        63.62        38.17        39.39        40.54        57.27 
TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       73.35        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      281.29       275.87        50.70        65.72       146.50       112.37 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
      127.33        84.59       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RQ 
      212.25       234.28        81.17        78.02       263.28       140.48 
TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      100.70        89.46       282.90       157.41        97.48       188.68 
TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
       21.47       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.88        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A402 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       37.87         7.07        70.16        18.84       103.63        71.15 
TCGA-BH-A0AV TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B6 TCGA-BH-A0B9 
       59.84        25.55        81.44        40.83        81.63        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       37.22        32.02        18.21        21.70        61.68        72.23 
TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       74.14        53.95        45.57        49.05        41.75        44.02 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DO TCGA-BH-A0DP 
       45.83        77.98        23.44        38.01        17.26        15.65 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        38.47        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE 
       15.68        14.30        44.81        46.19        32.58        31.00 
TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       24.43        10.78        15.16        37.78        53.26        24.56 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       26.50        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 
       12.89        51.32        27.25         5.59        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
       91.99        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        89.16        97.48       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN 
       74.73       122.89        36.92        63.35        55.00        72.07 
TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A28O 
      144.59        28.14        26.14        38.60        83.31        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
        6.44        20.12       109.28        20.88        18.64        23.51 
TCGA-BH-A6R8 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12N TCGA-C8-A12V 
        9.63         9.70        18.87        21.76        11.77        12.66 
TCGA-C8-A12Y TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
       48.53        12.59        12.92         4.08        12.33        10.92 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26W 
       11.28         0.16        12.03        12.95        12.33        12.53 
TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       12.36         8.28         9.53         0.03         9.50        24.56 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       33.99        12.95        12.49        13.25        20.58        13.97 
TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JH 
       21.14        19.20        14.17        16.50        18.15        14.01 
TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       16.73        25.74        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR 
       21.80        14.50        19.92        17.69        55.30        15.85 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       15.16        43.04        15.32        15.52         9.93        14.24 
TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       17.42        13.45        14.43        48.03        16.41        13.48 
TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
        1.61        13.08        12.53        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       16.18        12.66        25.22        43.00        34.42        27.52 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q 
       37.51        40.11        28.44        28.87        47.15        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y 
       38.60        33.17        43.33        34.26        31.96        69.34 
TCGA-E2-A150 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       63.62        23.24        19.43        21.04        23.87        14.79 
TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J 
       25.05        22.82        17.29        18.21        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
        9.04        20.58        11.05        50.79        19.56        56.94 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LG 
       11.08        54.18        60.36        73.64        19.66        50.07 
TCGA-E2-A1LI TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A574 
      102.61        26.99        34.55        43.56        30.61        38.76 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 
       34.29        17.69        32.88        36.82        22.29        34.16 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1R0 TCGA-E9-A1R3 
       41.62        35.77        25.84        18.94        28.27         2.56 
TCGA-E9-A1R5 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
        3.02        45.01         1.12        47.64        34.45        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       42.25        37.74        41.03        40.50        20.12         0.69 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       38.07        32.91        30.44        23.84        26.70         0.79 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       27.85        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ 
       13.25        16.57        15.68        22.82        29.95        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC 
       41.13        39.78        18.48        30.08        19.99         6.15 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FW TCGA-EW-A3E8 
       10.52        14.43        34.55        19.96        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A6SA TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        16.77        31.30         7.40        59.57       216.76 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       83.34        75.02        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
      115.69       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LL-A440 
       62.47        11.84        21.24        13.22        13.28        24.95 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       29.23        25.05        17.06        15.32        14.70        14.47 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 
       14.79        22.26        16.08         7.46        14.50        19.59 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       17.49        27.91         2.10        58.52        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5S0 
       40.08        34.92        36.36        28.87        24.72        20.38 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A6VO 
       23.47        65.62        41.92        42.77        17.36        28.21 
TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY 
       19.73        40.11        64.21        86.96         0.16         0.26 
TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 
        9.93        18.81        18.48        20.68        19.27        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S 
       18.87        17.39        17.26        13.94        17.03         3.81 
TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
       66.84        11.41        52.96        29.03        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                       233.62                        282.90 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                       25.005                        29.640 
[1] "0.0 - 233.6 (25.0)" "0.0 - 282.9 (29.6)"
[1] "hr=" "1.3"
D46V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 17(9P21.3) MUTATED        24       22        3        1       114
  DEL PEAK 17(9P21.3) WILD-TYPE      65       63        3        5       239
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 17(9P21.3) MUTATED          78         1         64         17
  DEL PEAK 17(9P21.3) WILD-TYPE       174         1         90         12
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 17(9P21.3) MUTATED           23       10         0       6
  DEL PEAK 17(9P21.3) WILD-TYPE         42       10         1       7
D46V3, multiclass
            clus
vv           DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  STAGE I                             24                            65
  STAGE IA                            22                            63
  STAGE IB                             3                             3
  STAGE II                             1                             5
  STAGE IIA                          114                           239
  STAGE IIB                           78                           174
  STAGE III                            1                             1
  STAGE IIIA                          64                            90
  STAGE IIIB                          17                            12
  STAGE IIIC                          23                            42
  STAGE IV                            10                            10
  STAGE TIS                            0                             1
  STAGE X                              6                             7
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 17(9P21.3) MUTATED    73 228  42  20
  DEL PEAK 17(9P21.3) WILD-TYPE 203 396  94  20
D46V4, multiclass
    clus
vv   DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  T1                          73                           203
  T2                         228                           396
  T3                          42                            94
  T4                          20                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK 17(9P21.3) MUTATED   161 111  57  30
  DEL PEAK 17(9P21.3) WILD-TYPE 346 247  62  47
D46V5, multiclass
    clus
vv   DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  N0                         161                           346
  N1                         111                           247
  N2                          57                            62
  N3                          30                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V6, binary
                               cls
clus                              0   1
  DEL PEAK 17(9P21.3) MUTATED   306  11
  DEL PEAK 17(9P21.3) WILD-TYPE 583  11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(9P21.3) MUTATED    306   11
  DEL PEAK 17(9P21.3) WILD-TYPE  583   11
   clus
vv  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  0                         306                           583
  1                          11                            11
[1] 2 2
[1] FALSE
D46V7, binary
                               cls
clus                              0   1
  DEL PEAK 17(9P21.3) MUTATED   357   7
  DEL PEAK 17(9P21.3) WILD-TYPE 711   5
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(9P21.3) MUTATED    357    7
  DEL PEAK 17(9P21.3) WILD-TYPE  711    5
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  FEMALE                         357                           711
  MALE                             7                             5
[1] 2 2
[1] FALSE
D46V8, binary
                               cls
clus                              0   1
  DEL PEAK 17(9P21.3) MUTATED   150 174
  DEL PEAK 17(9P21.3) WILD-TYPE 279 344
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(9P21.3) MUTATED    150  174
  DEL PEAK 17(9P21.3) WILD-TYPE  279  344
     clus
vv    DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  NO                          150                           279
  YES                         174                           344
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK 17(9P21.3) MUTATED                            1
  DEL PEAK 17(9P21.3) WILD-TYPE                          0
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 17(9P21.3) MUTATED                             302
  DEL PEAK 17(9P21.3) WILD-TYPE                           468
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 17(9P21.3) MUTATED                               24
  DEL PEAK 17(9P21.3) WILD-TYPE                            176
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 17(9P21.3) MUTATED                     4                     6
  DEL PEAK 17(9P21.3) WILD-TYPE                   2                     3
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 17(9P21.3) MUTATED                                 12
  DEL PEAK 17(9P21.3) WILD-TYPE                               17
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 17(9P21.3) MUTATED                    5             10
  DEL PEAK 17(9P21.3) WILD-TYPE                 12             37
D46V9, multiclass
                                  clus
vv                                 DEL PEAK 17(9P21.3) MUTATED
  INFILTRATING CARCINOMA NOS                                 1
  INFILTRATING DUCTAL CARCINOMA                            302
  INFILTRATING LOBULAR CARCINOMA                            24
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      6
  MIXED HISTOLOGY (PLEASE SPECIFY)                          12
  MUCINOUS CARCINOMA                                         5
  OTHER  SPECIFY                                            10
                                  clus
vv                                 DEL PEAK 17(9P21.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              468
  INFILTRATING LOBULAR CARCINOMA                             176
  MEDULLARY CARCINOMA                                          2
  METAPLASTIC CARCINOMA                                        3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            17
  MUCINOUS CARCINOMA                                          12
  OTHER  SPECIFY                                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 17(9P21.3) MUTATED                                  0    26
  DEL PEAK 17(9P21.3) WILD-TYPE                                1    34
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 17(9P21.3) MUTATED                          60   232
  DEL PEAK 17(9P21.3) WILD-TYPE                       121   513
D46V11, multiclass
                                  clus
vv                                 DEL PEAK 17(9P21.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     26
  BLACK OR AFRICAN AMERICAN                                 60
  WHITE                                                    232
                                  clus
vv                                 DEL PEAK 17(9P21.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       34
  BLACK OR AFRICAN AMERICAN                                  121
  WHITE                                                      513
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V12, binary
                               cls
clus                              0   1
  DEL PEAK 17(9P21.3) MUTATED    12 286
  DEL PEAK 17(9P21.3) WILD-TYPE  27 589
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(9P21.3) MUTATED     12  286
  DEL PEAK 17(9P21.3) WILD-TYPE   27  589
                        clus
vv                       DEL PEAK 17(9P21.3) MUTATED
  HISPANIC OR LATINO                              12
  NOT HISPANIC OR LATINO                         286
                        clus
vv                       DEL PEAK 17(9P21.3) WILD-TYPE
  HISPANIC OR LATINO                                27
  NOT HISPANIC OR LATINO                           589
[1] 2 2
[1] FALSE

Clustering(47) Variable = DEL PEAK 18(9Q21.11) MUTATION ANALYSIS
D47V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 18(9Q21.11) MUTATED   247  44
  DEL PEAK 18(9Q21.11) WILD-TYPE 670 103
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           291                            773 
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                            44                            103 
$`DEL PEAK 18(9Q21.11) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A04W 
      129.14        13.68         7.96        28.01        73.84       101.98 
TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CT TCGA-A2-A0D0 TCGA-A2-A0EO TCGA-A2-A0ET 
       36.13        99.12        75.25        67.33        80.28        35.05 
TCGA-A2-A0EU TCGA-A2-A0EY TCGA-A2-A0SX TCGA-A2-A0T1 TCGA-A2-A0YE TCGA-A2-A0YH 
       34.29        63.29        50.43        17.13        18.21        21.67 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XX 
       23.77        17.36        60.72        19.20        33.93        47.31 
TCGA-A2-A3XY TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DC 
       35.93        21.90        35.31        37.45        35.67        29.79 
TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A6VV 
       31.73        25.15        13.74        14.50        17.92        10.29 
TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y 
       13.02         1.02        17.98        53.06        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07P TCGA-A8-A07R 
        1.02        17.03         9.01        18.97        10.98         8.98 
TCGA-A8-A07W TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P 
        9.99        33.01        12.00        37.05        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09I 
        0.99        33.01        43.00        12.00         1.02        45.07 
TCGA-A8-A09M TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A7 
       33.07        25.02        19.04        19.04        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A2BM TCGA-AC-A2FF TCGA-AC-A2QH TCGA-AC-A2QI 
       27.02        17.03        99.35        90.71        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ 
       14.66        11.44        13.71        13.58         0.03         1.12 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AK 
        0.33         0.33         0.23         2.96         1.78         7.36 
TCGA-AN-A0AM TCGA-AN-A0FJ TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ 
        0.16         7.96         7.04         0.36         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O 
       12.33         0.33         0.33        80.28        66.77        81.63 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A12F 
       21.40        52.18        26.04        72.00        55.33        48.36 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       61.87        70.39         0.53        17.79         5.65        15.62 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TS TCGA-AR-A0TY TCGA-AR-A0U0 
        2.56        32.91       140.55        84.10        55.86        65.36 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AW 
      134.14       125.16       108.36        93.90        99.32        86.53 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24N TCGA-AR-A24S TCGA-AR-A24V TCGA-AR-A24Z 
       33.73        50.89        99.78        97.84       105.30        98.66 
TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A2LK TCGA-AR-A2LR TCGA-B6-A0I9 TCGA-B6-A0IB 
       93.30        71.05        54.21        57.27        12.13       129.57 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RL TCGA-B6-A0RO 
      165.76       129.07       140.88       255.68        81.17       162.05 
TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A401 
      102.77       100.70       282.90       113.79        43.59        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B7 
       70.16        68.12        62.93        39.55        70.22        84.13 
TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BV 
       51.68        43.53        74.89        75.48        45.57        49.94 
TCGA-BH-A0C3 TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H7 
       89.06         9.63        24.49        30.35        10.78        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0W3 TCGA-BH-A18K TCGA-BH-A18Q TCGA-BH-A18T 
       41.00        52.96        23.93        90.84        55.63         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1EV TCGA-BH-A1F8 TCGA-BH-A1FD 
       51.39        51.16       113.82        12.00        24.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A208 TCGA-BH-A209 
       74.73        45.63        72.07        72.07        57.83       130.16 
TCGA-BH-A42T TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12W 
       10.52         9.44        11.93        12.66        11.77        12.66 
TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A138 TCGA-C8-A1HN TCGA-C8-A26X 
       12.66         3.16        13.51         4.08        12.95        12.36 
TCGA-C8-A26Z TCGA-C8-A8HR TCGA-D8-A13Z TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J9 
        8.28        13.41        20.88        14.17        13.48        17.49 
TCGA-D8-A1JC TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1X5 TCGA-D8-A1X6 
       15.78        18.97        20.09        20.12        18.58        17.79 
TCGA-D8-A1XA TCGA-D8-A1XD TCGA-D8-A1XK TCGA-D8-A1XS TCGA-D8-A1XY TCGA-D8-A1Y3 
       27.58        17.16        14.50        16.31        16.54        14.14 
TCGA-D8-A27F TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A14O 
       16.04        10.09        12.26        46.59        40.41        44.68 
TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A154 
       40.96        38.60        32.02        31.96        18.51        19.43 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A1AZ TCGA-E2-A1II 
       25.05        23.34        20.71        21.63        76.57        33.70 
TCGA-E2-A1IO TCGA-E2-A1LB TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A56Z TCGA-E2-A573 
       60.99        75.81       102.61         8.75         8.28        34.92 
TCGA-E9-A1N4 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1QZ 
       32.88        36.20        36.56        35.24         9.86        24.82 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RG TCGA-E9-A1RH 
       11.15        48.23        32.09        40.24        21.27        46.59 
TCGA-E9-A22B TCGA-E9-A243 TCGA-E9-A295 TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1J6 
       38.37        20.12        12.33        25.81        26.40        28.77 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P8 
       25.94        22.82        29.85        52.96        23.11         7.86 
TCGA-EW-A1PA TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3E8 
       18.90        19.96        55.00        52.73        25.91        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-GI-A2C9 
       17.49        10.16        23.51        16.77        24.99       109.87 
TCGA-GM-A2DB TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A4E0 TCGA-JL-A3YX TCGA-LL-A441 
       79.10        70.85        72.10        72.03        11.57        32.75 
TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A7SZ TCGA-LL-A7T0 
       15.32        14.79         2.63        16.08        19.53        12.36 
TCGA-OL-A5D6 TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66N TCGA-OL-A66P 
       36.30        36.36        22.32        20.38        26.04        14.07 
TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA14 
       18.81        21.07        17.39 

$`DEL PEAK 18(9Q21.11) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ 
       47.24        20.88        31.79        39.32        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V 
      143.15        18.02        78.41       121.94        87.25        63.12 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
       55.43       136.73        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
      107.93        77.19         5.19        98.99       107.93        56.81 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72        89.36 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW 
      118.45        79.76        74.40        72.00        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       24.72        99.19        54.64        27.12        44.88        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.52         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI 
       20.75        32.55        25.28        50.47        21.90        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FZ 
       18.61        19.33        48.46        31.73        23.47        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       20.25        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A3Y0 
       91.07        29.98        32.75        56.28        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DB TCGA-A7-A13E 
       38.30        34.29        35.47        30.61        33.11        20.19 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H 
       23.61        29.56        31.36        24.26        23.74        23.80 
TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       21.73        20.61        22.32        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SE 
       11.28        13.41        14.70        11.97        14.93        21.17 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX 
       14.73        12.10        10.72        11.05         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06U TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E 
        8.75        13.02        29.03        53.98        43.00        19.99 
TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07S 
       18.97        14.01        12.00        32.05         9.99         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
       24.99        45.07        15.06        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08L TCGA-A8-A08T TCGA-A8-A08Z 
       38.01        28.96        19.96         9.99       112.08        40.01 
TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       33.01        30.97        17.95        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09R 
        9.99        50.04        49.05        29.98         1.02         8.98 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0AD 
       15.02         0.99        14.01        12.00        13.02        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
        0.95        22.95        73.91         5.72         1.48        73.05 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       40.57        86.66        60.92        87.12        26.04        74.14 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ 
       32.45         6.48        16.31        14.83        22.19        24.13 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI 
       25.05        14.99        16.57        19.79        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU 
       24.79        29.26        16.80        14.53        19.33        14.96 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP 
       17.42        18.67        12.26         1.68         8.22        20.19 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04D TCGA-AN-A0AJ 
        1.32         2.30         0.33         0.62         1.71         9.96 
TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        7.46         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FX 
        7.00         7.59         7.17         6.90         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XV 
        5.36         0.33         0.30         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
        5.59        61.35        95.70        68.75        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       29.13        32.78        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       21.53        50.70        50.86        76.77        65.10        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       50.24        62.04        71.80       115.27        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03        90.58        98.27        64.04        57.30 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AQ-A04H TCGA-AQ-A04J 
       41.62        40.57        14.73        82.62        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TT 
      130.09        32.52        19.20        98.33         5.26       109.02 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 
       75.22        98.93        64.83       107.24       133.22        83.87 
TCGA-AR-A0U4 TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
      107.21       101.00       103.86        97.68        98.33        96.00 
TCGA-AR-A1AO TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX 
       86.07        17.23        37.81        94.29        61.28        86.43 
TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
      160.90        94.22       120.33       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 
      112.77       105.27        77.69        32.58        98.76        89.00 
TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       99.62        85.64        93.83       166.42        20.25        86.53 
TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM 
       66.15        63.62        38.17        39.39        40.54        73.35 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      275.87        50.70        65.72       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
       18.77       127.33        84.59        68.45       212.25       234.28 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS 
       78.02       263.28       140.48        89.46       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 
      188.68        79.63        18.35        21.47       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI 
      245.10        28.27        68.94        58.88       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A409 TCGA-B6-A40B 
      139.17       170.17        37.87         7.07        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       71.15        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       40.83        39.16        81.63        37.22        32.02        18.21 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR 
       61.51        21.70        61.68        72.23        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 
       53.95        77.95        49.05        41.75        44.02        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       45.83        77.98        23.44        38.01        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       78.28        17.26        15.65         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0H0 
       44.81        46.19        32.58        31.00        24.43        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK 
       37.78        53.26        24.56        26.50        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
       50.79         5.59        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18L TCGA-BH-A18M 
       32.91         4.90        35.93        20.12        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1EN TCGA-BH-A1EO 
       37.74        30.28        37.55        66.05        67.50        91.99 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       82.85        42.28        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FG 
       31.53        89.16        97.48       120.62       114.15       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 
       36.92        63.35        55.00       144.59        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U 
       38.60        83.31        10.65         6.44        20.12       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       20.88        18.64        23.51         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12Q TCGA-C8-A12U 
       18.87        21.76        11.77        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.66        48.53        12.56         1.87        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
        4.11        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        10.42        12.33        12.33        20.25        12.53 
TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       12.95         9.67         9.53         0.03         9.50        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ 
       14.43        33.99        12.95        13.02        12.49        19.46 
TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A147 
       56.81        13.25        20.58        13.97        21.14        19.20 
TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       14.17        16.50        55.50        18.15        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       53.00        14.01        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       12.20        13.32        14.70        16.73        25.74        23.90 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL 
       18.15        12.39        15.22        14.73        21.80        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XU 
       17.69        55.30        16.41        15.85        16.64        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       15.16        43.04        15.32        15.52         9.93        14.24 
TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       17.42        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 
       13.48         4.80         1.61        13.08        12.53        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       18.51        21.67        16.18        12.66        25.22        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       34.42        27.52        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       47.15        38.24        33.17        75.98        43.33        34.26 
TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 
       69.34        63.62        69.96        23.24        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       14.79        22.82        17.29        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P 
       53.92         9.04        20.58        11.05        50.79        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       56.94        14.07        51.39        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       32.35        28.50        16.47        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       70.36        33.73        28.44        59.18         3.88        22.19 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA 
       11.08        54.18        60.36        73.64        19.66        24.59 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 
       28.90        50.07       106.75        43.04        26.99        34.55 
TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
       43.56        30.61        38.76        34.29        17.69        34.82 
TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       36.82        22.29        34.16        39.55        41.62        35.77 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
       25.84        18.94        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RI 
        3.02        45.01         1.12        46.65         6.58        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D 
       34.45        32.05        42.25        37.74        39.09        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       41.72        40.73        40.50         0.69        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
        7.13        24.56        29.72         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       27.85        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 
       13.25        16.57        15.68        29.95        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC 
       39.78        29.82        18.48        30.08        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FW TCGA-EW-A6S9 
       13.94        10.52        14.43        34.55        22.09        15.22 
TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC 
       31.30        33.21         7.40        59.57       216.76        83.34 
TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       75.02        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
       85.35       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U 
       13.55        18.12         2.60        62.47        11.84        21.24 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 
       13.22         7.10        13.28        10.62        24.95        29.23 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A73Y 
       25.05        17.06        14.70        14.47        22.26        15.68 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U 
        7.46        14.50        19.59        17.49        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
        2.10        58.52        31.99        58.62        40.08        34.92 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       28.87        24.72        26.70        23.47        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       42.77        17.36        28.21        19.73        40.11         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       47.01        64.21        86.96         0.16         0.26         9.93 
TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA15 
       18.48        20.68        19.27        13.84        18.87        17.26 
TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 
       13.94        17.03         3.81        66.84        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35        16.04       108.07       107.05 

  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                        282.90                         281.29 
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                         26.04                          28.27 
[1] "0.0 - 282.9 (26.0)" "0.0 - 281.3 (28.3)"
[1] "hr=" "1.2"
D47V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 18(9Q21.11) MUTATED        24       18        0        2       101
  DEL PEAK 18(9Q21.11) WILD-TYPE      65       67        6        4       252
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 18(9Q21.11) MUTATED          57         1         46         12
  DEL PEAK 18(9Q21.11) WILD-TYPE       195         1        108         17
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 18(9Q21.11) MUTATED           20        8         0       4
  DEL PEAK 18(9Q21.11) WILD-TYPE         45       12         1       9
D47V3, multiclass
            clus
vv           DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  STAGE I                              24                             65
  STAGE IA                             18                             67
  STAGE IB                              0                              6
  STAGE II                              2                              4
  STAGE IIA                           101                            252
  STAGE IIB                            57                            195
  STAGE III                             1                              1
  STAGE IIIA                           46                            108
  STAGE IIIB                           12                             17
  STAGE IIIC                           20                             45
  STAGE IV                              8                             12
  STAGE TIS                             0                              1
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 18(9Q21.11) MUTATED    62 178  36  16
  DEL PEAK 18(9Q21.11) WILD-TYPE 214 446 100  24
D47V4, multiclass
    clus
vv   DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  T1                           62                            214
  T2                          178                            446
  T3                           36                            100
  T4                           16                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 18(9Q21.11) MUTATED   141  86  39  24
  DEL PEAK 18(9Q21.11) WILD-TYPE 366 272  80  53
D47V5, multiclass
    clus
vv   DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  N0                          141                            366
  N1                           86                            272
  N2                           39                             80
  N3                           24                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V6, binary
                                cls
clus                               0   1
  DEL PEAK 18(9Q21.11) MUTATED   243   8
  DEL PEAK 18(9Q21.11) WILD-TYPE 646  14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(9Q21.11) MUTATED    243    8
  DEL PEAK 18(9Q21.11) WILD-TYPE  646   14
   clus
vv  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  0                          243                            646
  1                            8                             14
[1] 2 2
[1] FALSE
D47V7, binary
                                cls
clus                               0   1
  DEL PEAK 18(9Q21.11) MUTATED   287   7
  DEL PEAK 18(9Q21.11) WILD-TYPE 781   5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(9Q21.11) MUTATED    287    7
  DEL PEAK 18(9Q21.11) WILD-TYPE  781    5
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  FEMALE                          287                            781
  MALE                              7                              5
[1] 2 2
[1] FALSE
D47V8, binary
                                cls
clus                               0   1
  DEL PEAK 18(9Q21.11) MUTATED   103 155
  DEL PEAK 18(9Q21.11) WILD-TYPE 326 363
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(9Q21.11) MUTATED    103  155
  DEL PEAK 18(9Q21.11) WILD-TYPE  326  363
     clus
vv    DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  NO                           103                            326
  YES                          155                            363
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 18(9Q21.11) MUTATED                            0
  DEL PEAK 18(9Q21.11) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 18(9Q21.11) MUTATED                             245
  DEL PEAK 18(9Q21.11) WILD-TYPE                           525
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 18(9Q21.11) MUTATED                               23
  DEL PEAK 18(9Q21.11) WILD-TYPE                            177
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 18(9Q21.11) MUTATED                     2                     4
  DEL PEAK 18(9Q21.11) WILD-TYPE                   4                     5
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 18(9Q21.11) MUTATED                                 10
  DEL PEAK 18(9Q21.11) WILD-TYPE                               19
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 18(9Q21.11) MUTATED                    3              7
  DEL PEAK 18(9Q21.11) WILD-TYPE                 14             40
D47V9, multiclass
                                  clus
vv                                 DEL PEAK 18(9Q21.11) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             245
  INFILTRATING LOBULAR CARCINOMA                             23
  MEDULLARY CARCINOMA                                         2
  METAPLASTIC CARCINOMA                                       4
  MIXED HISTOLOGY (PLEASE SPECIFY)                           10
  MUCINOUS CARCINOMA                                          3
  OTHER  SPECIFY                                              7
                                  clus
vv                                 DEL PEAK 18(9Q21.11) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               525
  INFILTRATING LOBULAR CARCINOMA                              177
  MEDULLARY CARCINOMA                                           4
  METAPLASTIC CARCINOMA                                         5
  MIXED HISTOLOGY (PLEASE SPECIFY)                             19
  MUCINOUS CARCINOMA                                           14
  OTHER  SPECIFY                                               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 18(9Q21.11) MUTATED                                  1    16
  DEL PEAK 18(9Q21.11) WILD-TYPE                                0    44
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 18(9Q21.11) MUTATED                          55   188
  DEL PEAK 18(9Q21.11) WILD-TYPE                       126   557
D47V11, multiclass
                                  clus
vv                                 DEL PEAK 18(9Q21.11) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      16
  BLACK OR AFRICAN AMERICAN                                  55
  WHITE                                                     188
                                  clus
vv                                 DEL PEAK 18(9Q21.11) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        44
  BLACK OR AFRICAN AMERICAN                                   126
  WHITE                                                       557
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V12, binary
                                cls
clus                               0   1
  DEL PEAK 18(9Q21.11) MUTATED    13 228
  DEL PEAK 18(9Q21.11) WILD-TYPE  26 647
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(9Q21.11) MUTATED     13  228
  DEL PEAK 18(9Q21.11) WILD-TYPE   26  647
                        clus
vv                       DEL PEAK 18(9Q21.11) MUTATED
  HISPANIC OR LATINO                               13
  NOT HISPANIC OR LATINO                          228
                        clus
vv                       DEL PEAK 18(9Q21.11) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            647
[1] 2 2
[1] FALSE

Clustering(48) Variable = DEL PEAK 19(9Q34.2) MUTATION ANALYSIS
D48V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 19(9Q34.2) MUTATED   258  36
  DEL PEAK 19(9Q34.2) WILD-TYPE 659 111
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          294                           770 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                           36                           111 
$`DEL PEAK 19(9Q34.2) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04R 
      129.14        13.68         7.96        28.01        18.02       121.94 
TCGA-A2-A04U TCGA-A2-A0CL TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0D1 TCGA-A2-A0EO 
       87.25        99.12        75.25         5.19        34.55        80.28 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0YE TCGA-A2-A0YH 
       35.05        34.29        50.43        17.52        18.21        21.67 
TCGA-A2-A0YT TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XX 
       23.77        60.72        19.20        33.93        91.07        47.31 
TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0D9 
       35.93        50.83        21.90        35.31        30.61        37.45 
TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A26I TCGA-A7-A4SB 
       35.67        29.79        31.73        25.15        21.73        13.74 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       14.50        21.17        17.92        10.29         9.37        10.42 
TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A079 
       13.02         1.02        53.06        31.00         1.02         9.01 
TCGA-A8-A07B TCGA-A8-A07G TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A08F TCGA-A8-A08I 
       43.00        18.97         8.98        24.99        33.01        12.00 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E 
       31.00        31.00         0.99        12.00         1.02        49.05 
TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A0A2 
       45.07        33.07         1.02        25.02        19.04        19.04 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A2BK TCGA-AC-A2BM 
       21.04         0.99        27.02        17.03        73.05        99.35 
TCGA-AC-A2FF TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3W5 TCGA-AC-A5EH 
       90.71        33.04        19.33        14.66        16.57        16.80 
TCGA-AC-A62V TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y 
       11.44        13.58         0.03         1.12         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AL 
        0.23         0.62         1.78         1.71         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FW TCGA-AN-A0FZ TCGA-AN-A0XN 
        0.16         0.33         7.96         0.36         0.33         0.33 
TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O 
        0.33         0.33         5.33        80.28        66.77        81.63 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0JD 
       29.13        32.78        52.18        26.04        37.48        72.00 
TCGA-AO-A0JL TCGA-AO-A129 TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KR 
       55.33       108.03        48.36        41.62        61.87        70.39 
TCGA-AO-A1KT TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A54O 
       17.79        26.93         5.65        15.62         2.56        32.91 
TCGA-AR-A0TP TCGA-AR-A0TS TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 
      140.55        84.10        55.86        65.36       133.22       134.14 
TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AW 
      107.21       125.16       108.36        93.90        99.32        86.53 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24N TCGA-AR-A24S TCGA-AR-A24V 
       33.73       160.90        50.89        99.78        97.84       105.30 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A256 TCGA-AR-A2LK TCGA-AR-A2LL TCGA-B6-A0IB 
       99.62        93.30        93.83        54.21        66.15       129.57 
TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0WX 
      165.76       140.88       255.68       162.05       102.77        21.47 
TCGA-B6-A1KC TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-BH-A0AU 
       43.59        85.35        70.16        68.12        18.84        62.93 
TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0BG 
       39.55        70.22        84.13        51.68        43.53        61.51 
TCGA-BH-A0BL TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0C3 TCGA-BH-A0E0 TCGA-BH-A0E6 
       74.89        45.57        49.94        89.06         4.41         9.63 
TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0W3 
       24.49        30.35        10.78        41.00        52.96        23.93 
TCGA-BH-A0WA TCGA-BH-A18K TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A1EN 
       23.05        90.84        55.63        66.05         7.36        67.50 
TCGA-BH-A1ES TCGA-BH-A1F8 TCGA-BH-A1FD TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A208 
      113.82        24.62        33.17        45.63        72.07        57.83 
TCGA-BH-A209 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-AB28 TCGA-C8-A12O 
      130.16        10.52        18.64        23.51         9.44        12.66 
TCGA-C8-A12P TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 
       11.77        12.66        12.66         3.16        13.51        12.59 
TCGA-C8-A138 TCGA-C8-A1HJ TCGA-C8-A26X TCGA-C8-A27B TCGA-C8-A8HR TCGA-D8-A13Y 
        4.08         0.16        12.36        14.43        13.41        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J9 
       20.88        13.25        14.17        13.48        19.20        17.49 
TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JJ TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1XA 
       15.78        12.03        20.09        18.58        17.79        27.58 
TCGA-D8-A1XD TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XY TCGA-D8-A1Y3 TCGA-D8-A27F 
       17.16        16.41        16.31        16.54        14.14        16.04 
TCGA-D8-A27H TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A109 TCGA-E2-A14O TCGA-E2-A14R 
       13.05        10.09        12.26        46.59        44.68        38.60 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A159 
       32.02        31.96        18.51        63.62        19.43        25.05 
TCGA-E2-A15A TCGA-E2-A15F TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1II TCGA-E2-A1L7 
       23.34        21.63        14.07        76.57        33.70        60.36 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N8 
      106.75       102.61         8.75        34.92        38.76        34.16 
TCGA-E9-A1NC TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RG 
       39.55         9.86        24.82        11.15        48.23        21.27 
TCGA-E9-A1RH TCGA-E9-A22B TCGA-E9-A244 TCGA-E9-A3QA TCGA-E9-A5UP TCGA-EW-A1J6 
       46.59        38.37         0.69        30.18        26.40        28.77 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       25.94        22.82        29.85        52.96        29.82        23.11 
TCGA-EW-A1P8 TCGA-EW-A1PD TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
        7.86        13.94        19.96        55.00        52.73        25.91 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-GI-A2C9 
       17.49        10.16        23.51        16.77        24.99       109.87 
TCGA-GM-A2DB TCGA-GM-A2DF TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YM 
       79.10        70.85         2.60        11.57        32.75        15.32 
TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-OL-A5RW 
       14.79         2.63        16.08        19.53        12.36        36.36 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66N TCGA-OL-A66P TCGA-S3-A6ZG TCGA-S3-A6ZH 
       22.32        20.38        26.04        14.07        18.48        21.07 

$`DEL PEAK 19(9Q34.2) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
        9.96         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ 
       47.24        20.88        31.79        39.32        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X 
      143.15        78.41        73.84        63.12       101.98        55.43 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
       36.13       136.73        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 
      107.93        77.19        98.99       107.93        56.81        67.33 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP 
       33.76        61.58        25.22       101.72        89.36       118.45 
TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       79.76        74.40        72.00        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       63.29        99.19        54.64        27.12        44.88        44.28 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.13         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YI 
       20.75        32.55        25.28        50.47        21.90        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FW 
       18.61        19.33        48.46        31.73        23.47        17.36 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       22.45        20.25        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A4RW 
       39.65        29.98        32.75        56.28        50.37         7.30 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD 
       24.39        21.30        23.21        26.96        21.14        38.30 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0DB TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H 
       34.29        35.47        33.11        20.19        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD 
       31.36        24.26        23.74        23.80        20.61        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       11.34        10.59        10.29        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       11.97        14.93        14.73        12.10        10.72        11.05 
TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A075 
        8.75        13.02        17.98        29.03        26.01        17.03 
TCGA-A8-A076 TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       53.98        19.99        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 
        9.99        10.98         7.99         9.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       37.05         9.99        33.01       112.08        43.00        40.01 
TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       33.01        30.97        17.95        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09D TCGA-A8-A09K TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W 
        9.99        50.04        29.98         8.98        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
       14.01        12.00        13.02        38.04         0.95        22.95 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FG 
       73.91         5.72         1.48        40.57        86.66        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       87.12        26.04        74.14        32.45         6.48        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 
       14.83        22.19        24.13        25.05        14.99        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EI TCGA-AC-A5XS 
       15.48        23.24        24.79        29.26        14.53        19.33 
TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO 
       14.96        13.71        17.42        18.67        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A04A 
        8.22        20.19         1.32         2.30         0.33         2.96 
TCGA-AN-A0AJ TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK 
        9.96         0.33         0.33         6.44         5.65         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX 
        7.59         7.17         6.90         7.04         0.33         0.33 
TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT 
        0.33         5.36        12.33         0.30         0.33         0.33 
TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
        5.59        61.35        95.70        68.75        47.87        58.95 
TCGA-AO-A0J3 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       21.40        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       50.86        76.77        65.10        26.24        50.24        62.04 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A 
       71.80       115.27        99.25       108.72       106.78        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       98.27        64.04        57.30        40.57        14.73        82.62 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TQ 
        0.53        24.79       130.09        32.52        19.20        98.33 
TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TZ 
        5.26       109.02        75.22        98.93        64.83       107.24 
TCGA-AR-A0U2 TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN 
       83.87       101.00       103.86        97.68        98.33        96.00 
TCGA-AR-A1AO TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX 
       86.07        17.23        37.81        94.29        61.28        86.43 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
       94.22       120.33       118.59         2.76       104.28       112.77 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
      105.27        77.69        32.58        98.76        98.66        89.00 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM 
       85.64        71.05       166.42        20.25        86.53        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN 
       38.17        39.39        40.54        57.27        73.35        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 
       38.96        10.59        77.62       143.38       281.29        12.13 
TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      275.87        50.70        65.72       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RH 
       18.77       127.33        84.59       129.07        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RQ TCGA-B6-A0RS 
      234.28        81.17        78.02       263.28       140.48       100.70 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       157.41        97.48       188.68        79.63 
TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       18.35       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       68.94        58.88       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV TCGA-BH-A0AW 
       37.87         7.07       103.63        71.15        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B6 
       25.55        63.09        81.44        40.83        39.16        81.63 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       37.22        32.02        18.21        21.70        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0BZ 
       75.48        74.14        76.60        53.95        77.95        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       41.75        44.02        90.97        45.83        77.98        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP 
       38.01        29.98        13.91        78.28        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        38.47        67.86        70.88        16.27 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE 
       15.68        14.30        44.81        46.19        32.58        31.00 
TCGA-BH-A0EI TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       24.43        15.16        37.78        53.26        24.56        23.08 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       26.50        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W4 
       12.89        51.32        27.25        50.79         5.59        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       42.35        44.81        32.91         4.90        35.93        20.12 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18U 
       26.66        72.56        37.74        30.28        37.55        51.39 
TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       51.16        91.99        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 
       49.58        17.69        25.81        31.53        89.16        97.48 
TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      120.62       114.15        74.73       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       55.00       144.59        72.07        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V 
       83.31        10.65         6.44        20.12       109.28        20.88 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12L 
        9.63         5.26         9.70        18.87        21.76        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12Y 
       11.77        11.77        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF 
       12.56         1.87        12.92         4.11        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN 
       11.34        11.28        12.03        10.42        12.33        12.95 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       12.33        20.25        12.53        12.95         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 
        9.53         0.03         9.50        24.56        33.99        12.95 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A146 
       13.02        12.49        19.46        20.58        13.97        21.14 
TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG 
       14.17        16.50        55.50        18.15        18.90        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       14.01        18.97        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X7 TCGA-D8-A1X8 
       21.01        12.20        13.32        14.70        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       23.90        18.15        12.39        15.22        14.73        21.80 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XT 
       14.50        19.92        17.69        55.30        15.85        16.64 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       12.99        15.16        43.04        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       14.24        17.42        13.45        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 
       13.48         4.80         1.61        13.08        12.53        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       18.51        21.67        16.18        12.66        25.22        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       34.42        27.52        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T 
       28.87        47.15        40.96        38.24        33.17        75.98 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 
       43.33        34.26        69.34        69.96        23.24        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15G 
       23.87        14.79        22.82        17.29        20.71        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 
       50.79        19.56        56.94        51.39        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE 
       33.01        32.35        28.50        16.47        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       37.41        70.36        33.73        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        73.64        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LL TCGA-E2-A2P5 
       24.59        75.81        28.90        50.07        43.04        26.99 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 TCGA-E2-A9RU 
       34.55        43.56         8.28        30.61        34.29        17.69 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        22.29        36.20        36.56 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1R0 
       41.62        35.77        35.24        25.84        18.94        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1RA TCGA-E9-A1RB 
       34.95         2.56         6.12         3.02        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A226 
       40.24         1.12        46.65         6.58        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E 
       32.05        42.25        37.74        39.09        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.73        40.50        20.12        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       27.85        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 
       13.25        16.57        15.68        29.95        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       39.78        18.48        30.08        18.90        19.99         6.15 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A6S9 
       10.52        14.43        34.55        22.09        34.03        15.22 
TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC 
       31.30        33.21         7.40        59.57       216.76        83.34 
TCGA-GM-A2DD TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       75.02        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      101.62        85.35       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW 
       66.38        72.03        13.55        18.12        62.47        11.84 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 
       21.24        13.22         7.10        13.28        10.62        24.95 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP 
       29.23        25.05        17.06        14.70        14.47        22.26 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       15.68         7.46        14.50        19.59        17.49        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66I 
       40.08        34.92        28.87        24.72        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A6VO TCGA-OL-A6VQ 
       65.62        41.92        42.77        17.36        28.21        19.73 
TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX 
       40.11         8.91        47.01        64.21        86.96         0.16 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 
        0.26         9.93        18.81        20.68        19.27        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S 
       18.87        17.39        17.26        13.94        17.03         3.81 
TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
       66.84        11.41        52.96        29.03        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                         0.03                          0.03 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                       255.68                        282.90 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                       25.530                        28.685 
[1] "0.0 - 255.7 (25.5)" "0.0 - 282.9 (28.7)"
[1] "hr=" "1.1"
D48V2, continuous
                               vv
clus                            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 19(9Q34.2) MUTATED        23       18        0        2       107
  DEL PEAK 19(9Q34.2) WILD-TYPE      66       67        6        4       246
                               vv
clus                            STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 19(9Q34.2) MUTATED          56         1         47         14
  DEL PEAK 19(9Q34.2) WILD-TYPE       196         1        107         15
                               vv
clus                            STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 19(9Q34.2) MUTATED           18        5         0       4
  DEL PEAK 19(9Q34.2) WILD-TYPE         47       15         1       9
D48V3, multiclass
            clus
vv           DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  STAGE I                             23                            66
  STAGE IA                            18                            67
  STAGE IB                             0                             6
  STAGE II                             2                             4
  STAGE IIA                          107                           246
  STAGE IIB                           56                           196
  STAGE III                            1                             1
  STAGE IIIA                          47                           107
  STAGE IIIB                          14                            15
  STAGE IIIC                          18                            47
  STAGE IV                             5                            15
  STAGE TIS                            0                             1
  STAGE X                              4                             9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 19(9Q34.2) MUTATED    60 188  32  15
  DEL PEAK 19(9Q34.2) WILD-TYPE 216 436 104  25
D48V4, multiclass
    clus
vv   DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  T1                          60                           216
  T2                         188                           436
  T3                          32                           104
  T4                          15                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                             N0  N1  N2  N3
  DEL PEAK 19(9Q34.2) MUTATED   149  83  41  21
  DEL PEAK 19(9Q34.2) WILD-TYPE 358 275  78  56
D48V5, multiclass
    clus
vv   DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  N0                         149                           358
  N1                          83                           275
  N2                          41                            78
  N3                          21                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V6, binary
                               cls
clus                              0   1
  DEL PEAK 19(9Q34.2) MUTATED   251   5
  DEL PEAK 19(9Q34.2) WILD-TYPE 638  17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(9Q34.2) MUTATED    251    5
  DEL PEAK 19(9Q34.2) WILD-TYPE  638   17
   clus
vv  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  0                         251                           638
  1                           5                            17
[1] 2 2
[1] FALSE
D48V7, binary
                               cls
clus                              0   1
  DEL PEAK 19(9Q34.2) MUTATED   289   8
  DEL PEAK 19(9Q34.2) WILD-TYPE 779   4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(9Q34.2) MUTATED    289    8
  DEL PEAK 19(9Q34.2) WILD-TYPE  779    4
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  FEMALE                         289                           779
  MALE                             8                             4
[1] 2 2
[1] FALSE
D48V8, binary
                               cls
clus                              0   1
  DEL PEAK 19(9Q34.2) MUTATED   110 149
  DEL PEAK 19(9Q34.2) WILD-TYPE 319 369
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(9Q34.2) MUTATED    110  149
  DEL PEAK 19(9Q34.2) WILD-TYPE  319  369
     clus
vv    DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  NO                          110                           319
  YES                         149                           369
[1] 2 2
[1] FALSE
                               vv
clus                            INFILTRATING CARCINOMA NOS
  DEL PEAK 19(9Q34.2) MUTATED                            0
  DEL PEAK 19(9Q34.2) WILD-TYPE                          1
                               vv
clus                            INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 19(9Q34.2) MUTATED                             251
  DEL PEAK 19(9Q34.2) WILD-TYPE                           519
                               vv
clus                            INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 19(9Q34.2) MUTATED                               22
  DEL PEAK 19(9Q34.2) WILD-TYPE                            178
                               vv
clus                            MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 19(9Q34.2) MUTATED                     4                     3
  DEL PEAK 19(9Q34.2) WILD-TYPE                   2                     6
                               vv
clus                            MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 19(9Q34.2) MUTATED                                  7
  DEL PEAK 19(9Q34.2) WILD-TYPE                               22
                               vv
clus                            MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 19(9Q34.2) MUTATED                    3              6
  DEL PEAK 19(9Q34.2) WILD-TYPE                 14             41
D48V9, multiclass
                                  clus
vv                                 DEL PEAK 19(9Q34.2) MUTATED
  INFILTRATING CARCINOMA NOS                                 0
  INFILTRATING DUCTAL CARCINOMA                            251
  INFILTRATING LOBULAR CARCINOMA                            22
  MEDULLARY CARCINOMA                                        4
  METAPLASTIC CARCINOMA                                      3
  MIXED HISTOLOGY (PLEASE SPECIFY)                           7
  MUCINOUS CARCINOMA                                         3
  OTHER  SPECIFY                                             6
                                  clus
vv                                 DEL PEAK 19(9Q34.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              519
  INFILTRATING LOBULAR CARCINOMA                             178
  MEDULLARY CARCINOMA                                          2
  METAPLASTIC CARCINOMA                                        6
  MIXED HISTOLOGY (PLEASE SPECIFY)                            22
  MUCINOUS CARCINOMA                                          14
  OTHER  SPECIFY                                              41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V10, continuous
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 19(9Q34.2) MUTATED                                  0    17
  DEL PEAK 19(9Q34.2) WILD-TYPE                                1    43
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 19(9Q34.2) MUTATED                          63   187
  DEL PEAK 19(9Q34.2) WILD-TYPE                       118   558
D48V11, multiclass
                                  clus
vv                                 DEL PEAK 19(9Q34.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     17
  BLACK OR AFRICAN AMERICAN                                 63
  WHITE                                                    187
                                  clus
vv                                 DEL PEAK 19(9Q34.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       43
  BLACK OR AFRICAN AMERICAN                                  118
  WHITE                                                      558
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V12, binary
                               cls
clus                              0   1
  DEL PEAK 19(9Q34.2) MUTATED    13 235
  DEL PEAK 19(9Q34.2) WILD-TYPE  26 640
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(9Q34.2) MUTATED     13  235
  DEL PEAK 19(9Q34.2) WILD-TYPE   26  640
                        clus
vv                       DEL PEAK 19(9Q34.2) MUTATED
  HISPANIC OR LATINO                              13
  NOT HISPANIC OR LATINO                         235
                        clus
vv                       DEL PEAK 19(9Q34.2) WILD-TYPE
  HISPANIC OR LATINO                                26
  NOT HISPANIC OR LATINO                           640
[1] 2 2
[1] FALSE

Clustering(49) Variable = DEL PEAK 20(10Q23.31) MUTATION ANALYSIS
D49V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 20(10Q23.31) MUTATED   271  46
  DEL PEAK 20(10Q23.31) WILD-TYPE 646 101
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            317                             747 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                             46                             101 
$`DEL PEAK 20(10Q23.31) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-A1-A0SJ TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
      129.14       131.67        13.68        39.32        28.01        19.20 
TCGA-A2-A04T TCGA-A2-A04W TCGA-A2-A0CL TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU 
       73.84       101.98        99.12        77.19        75.25         5.19 
TCGA-A2-A0D0 TCGA-A2-A0D4 TCGA-A2-A0EV TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0T3 
       67.33        25.22        31.82        27.12        17.52        49.84 
TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A25B 
       18.21        21.90        18.61        60.72        19.20        42.44 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S1 
       33.93        91.07        50.83         7.30        24.39        26.96 
TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26E 
       30.61        35.67        20.19        25.15        29.56        31.36 
TCGA-A7-A26G TCGA-A7-A2KD TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       23.74        22.32        14.93        13.74        14.50        21.17 
TCGA-A7-A56D TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06R 
       14.73        11.05        10.29         9.37         8.75        17.98 
TCGA-A8-A06U TCGA-A8-A076 TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07R TCGA-A8-A084 
       29.03        53.98        19.99        18.97         8.98        15.06 
TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08X TCGA-A8-A097 TCGA-A8-A09A 
       33.01        12.00         9.99        43.00        12.00         9.99 
TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09R TCGA-A8-A09T 
       12.00        49.05        45.07        33.07         8.98        19.04 
TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H 
       19.04        21.04        17.03        38.04         0.95         5.72 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3EH TCGA-AC-A5XU TCGA-AC-A62Y 
       33.04        19.33        14.66         6.48        14.96        17.42 
TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
       13.58         0.03         1.12         9.96         7.36         7.46 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ 
        0.33         0.33         0.33         0.36         0.33         0.33 
TCGA-AN-A0XN TCGA-AN-A0XP TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03M 
        0.33         0.30         0.33         0.33         5.59        61.35 
TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       66.77        95.70        47.87        58.95        29.13        32.78 
TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0JA TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A124 
       52.18        37.48        21.53        72.00        55.33       115.27 
TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AQ-A04H TCGA-AQ-A04J 
      108.03        64.04        48.36        41.62        24.79        26.93 
TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV 
       32.91        19.20         5.26        84.10       109.02        75.22 
TCGA-AR-A0TW TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A1AH TCGA-AR-A1AI 
       98.93        65.36       133.22        83.87       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L 
      101.00        98.33        17.23        33.73       160.90        94.22 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A250 TCGA-AR-A251 
      104.28       112.77        77.69        32.58        89.00        99.62 
TCGA-AR-A254 TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LO TCGA-AR-A2LR TCGA-AR-A5QQ 
       85.64        54.21        66.15        39.39        57.27        10.59 
TCGA-B6-A0I1 TCGA-B6-A0IB TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0IQ 
       77.62       129.57       233.62        18.77       165.76       140.88 
TCGA-B6-A0RE TCGA-B6-A0RL TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WT TCGA-B6-A0WX 
      255.68        81.17       100.70       282.90       188.68        21.47 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-BH-A0AV 
       73.51       139.17        70.16        68.12        18.84        59.84 
TCGA-BH-A0AW TCGA-BH-A0B3 TCGA-BH-A0BA TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BT 
       20.45        39.55        37.22        21.70        74.89        45.57 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0EB TCGA-BH-A0GZ 
       49.94        77.95        49.05        44.02        24.49        10.78 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HP TCGA-BH-A0HW TCGA-BH-A0WA 
       23.08        41.00        52.96        13.61        51.32        23.05 
TCGA-BH-A18I TCGA-BH-A18T TCGA-BH-A1EO TCGA-BH-A1EU TCGA-BH-A1EY TCGA-BH-A1F2 
       35.93         7.36        91.99        42.28        17.69        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FH TCGA-BH-A1FM TCGA-BH-A202 
       97.48        24.62       114.15        36.92        45.63        26.14 
TCGA-BH-A208 TCGA-BH-A8G0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12U TCGA-C8-A12W 
       57.83        21.76        11.93        11.77        12.66        12.66 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
        1.87        12.59        11.28        12.03        12.33        12.95 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M8 
       20.25        12.53        12.36        24.56        14.43        12.95 
TCGA-C8-A8HP TCGA-D8-A13Y TCGA-D8-A142 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JB 
       13.02        56.81        13.97        14.17        17.49        55.50 
TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1X5 TCGA-D8-A1XB 
       15.78        12.03        53.00        18.97        18.58        18.15 
TCGA-D8-A1XF TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XU TCGA-D8-A1XV 
       15.22        21.80        14.50        16.41        12.99        15.16 
TCGA-D8-A1XZ TCGA-D8-A27F TCGA-D8-A27I TCGA-D8-A27M TCGA-D8-A27T TCGA-D8-A3Z6 
       15.32        16.04        14.43        13.48        13.08        18.51 
TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14Y TCGA-E2-A14Z 
       40.11        47.15        38.60        75.98        69.34        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15F TCGA-E2-A15P 
       63.62        69.96        25.05        23.34        21.63        19.56 
TCGA-E2-A1IE TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IN TCGA-E2-A1L7 TCGA-E2-A1LG 
       77.65        33.73        28.44        22.19        60.36        50.07 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 
      106.75       102.61         8.75         8.28        34.92        38.76 
TCGA-E2-A576 TCGA-E9-A1N6 TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NI TCGA-E9-A1R2 
       34.29        22.29        41.62        35.24         9.86        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RF TCGA-E9-A1RH 
        2.56        48.23        32.09        40.24         6.58        46.59 
TCGA-E9-A226 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 
       34.45        38.37        41.03        41.72        40.73         0.69 
TCGA-E9-A248 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A54Y TCGA-E9-A5FK 
        1.94        29.72        38.07        30.18        23.84        26.70 
TCGA-E9-A6HE TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 
       27.85        28.77        22.82        29.82        23.11         7.86 
TCGA-EW-A1PA TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A6S9 TCGA-EW-A6SD TCGA-GI-A2C8 
       18.90        52.73        25.91        15.22        33.21         7.40 
TCGA-GI-A2C9 TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DK TCGA-GM-A3XL TCGA-HN-A2NL 
      109.87        83.34        75.02        86.96        69.30         2.60 
TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A73Z 
       11.57         7.10        15.32        14.47        22.26         7.46 
TCGA-LL-A8F5 TCGA-OL-A5RW TCGA-OL-A66I TCGA-OL-A66P TCGA-OL-A6VO TCGA-PE-A5DE 
       19.59        36.36        23.47        14.07        28.21        86.96 
TCGA-PL-A8LX TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-Z7-A8R6 
        0.16        18.48        21.07        13.84       107.05 

$`DEL PEAK 20(10Q23.31) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
       42.81        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       20.88        31.79         7.96        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y 
       78.41       121.94        87.25        63.12        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        24.79       114.81        92.48        88.60       107.93 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       98.99       107.93        56.81        34.55        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72        89.36        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        35.05        34.29        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       99.19        54.64        44.88        50.43        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC 
        8.38        20.52        17.46        18.90        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL 
       25.28        50.47        21.67        49.48        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G0 
       31.73        23.77        23.47        17.36        22.45        20.25 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D 
       19.56        16.47        52.47       107.70        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV 
      105.34        10.59        36.23        39.65        29.98        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RY TCGA-A2-A4S0 
       56.28        47.31        35.93        50.37        21.30        23.21 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       21.14        21.90        38.30        35.31        34.29        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13G TCGA-A7-A26F 
       37.45        33.11        29.79        31.73        23.61        24.26 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       23.80        21.73        20.61        11.34        10.59        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SF TCGA-A7-A5ZV 
       11.28        13.41        14.70        11.97        17.92        12.10 
TCGA-A7-A5ZW TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T 
       10.72        10.42        13.02        13.02         1.02        53.06 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07B 
       31.00        26.01         1.02        17.03         9.01        43.00 
TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A086 
        7.99        24.99         9.99        45.07        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J TCGA-A8-A08O 
        0.99        38.01        28.96        19.96        37.05        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 
       31.00         0.99        33.01       112.08        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09C TCGA-A8-A09D 
       30.97        17.95        41.98         9.99         1.02        50.04 
TCGA-A8-A09K TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       29.98         1.02        25.02        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A23G 
       12.00        13.02         0.99        27.02        22.95        73.91 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
        1.48        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3BB TCGA-AC-A3HN 
       60.92        87.12        26.04        74.14        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 
       14.83        22.19        24.13        25.05        14.99        16.57 
TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH 
       19.79        15.48        23.24        24.79        29.26        16.80 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IX 
       14.53        19.33        11.44        13.71        18.67        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        1.68         8.22        20.19         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        1.71         0.16         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FY 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L 
        5.36        12.33         0.33         0.33         5.33        80.28 
TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 
       81.63        68.75        21.40        26.04        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       53.03        50.70        50.86        76.77        65.10        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       50.24        62.04        71.80        99.25       108.72       106.78 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       90.58        98.27        57.30        40.57        14.73        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04L TCGA-AQ-A0Y5 
       61.87        70.39         0.53        17.79       130.09         5.65 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TX 
       15.62        32.52         2.56       140.55        98.33        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AK TCGA-AR-A1AL 
       55.86       107.24       134.14       107.21       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AU 
       96.00        86.07        93.90        99.32        37.81        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N 
       61.28        86.53        86.43        50.89       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A24X 
      118.59         2.76        97.84       105.27       105.30        98.76 
TCGA-AR-A24Z TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       98.66        93.30        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN 
       86.53        63.62        38.17        40.54        73.35        33.30 
TCGA-AR-A5QP TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC 
       38.96       143.38       281.29        12.13       275.87        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP 
       65.72       146.50       112.37       127.33        84.59       129.07 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO 
       68.45       212.25       234.28        78.02       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WV 
      102.77       140.48        89.46       157.41        97.48        79.63 
TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       18.35       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A2IU TCGA-B6-A3ZX 
       68.94        58.88        43.59       101.52       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AY 
        7.07        85.35       103.63        71.15        62.93        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 
       63.09        81.44        40.83        39.16        70.22        81.63 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       84.13        51.68        32.02        18.21        43.53        61.51 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        53.95 
TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       41.75        89.06        90.97        45.83        77.98        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP 
       38.01        29.98        13.91        78.28        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        38.47        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        46.19 
TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0H0 TCGA-BH-A0H3 
       32.58        31.00        24.43        30.35        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       53.26        24.56        26.50        20.38         5.85         2.50 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       36.85        12.89        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J 
       24.95        42.35        44.81        32.91         4.90        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES 
       37.55        66.05        51.39        51.16        67.50       113.82 
TCGA-BH-A1ET TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F5 
       82.85        12.00        55.69        49.58        25.81        89.16 
TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL 
      120.62        33.17        74.73       122.89        63.35        55.00 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 
       72.07       144.59        72.07        28.14        38.60        83.31 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       20.88        18.64        23.51         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       18.87         9.44        11.77        12.66        11.77        12.66 
TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56         3.16        13.51 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92         4.11         4.08        12.33        10.92        11.34 
TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HO TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
        0.16        10.42        12.33        12.95         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A8HQ TCGA-C8-A8HR 
        9.53         0.03         9.50        33.99        12.49        13.41 
TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 
       19.46        20.88        13.25        20.58        14.17        13.48 
TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH 
       21.14        19.20        16.50        18.15        18.90        14.01 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       12.20        13.32        14.70        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XL 
       23.90        27.58        12.39        17.16        14.73        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XW 
       17.69        55.30        15.85        16.31        16.64        43.04 
TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       16.54        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P 
       13.45        13.05        48.03        16.41         4.80         1.61 
TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-D8-A73U 
       10.09        12.53        12.26        33.37        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       12.66        25.22        43.00        34.42        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14P 
       40.41        37.51        28.44        28.87        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       38.24        33.17        43.33        34.26        32.02        31.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15C 
       23.24        19.43        21.04        23.87        14.79        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       17.29        20.71        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        50.79        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II 
       28.50        16.47        37.25        37.41        70.36        33.70 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 
       59.18         3.88        60.99        11.08        54.18        73.64 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LL TCGA-E2-A2P5 
       19.66        24.59        75.81        28.90        43.04        26.99 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 
       34.55        43.56        30.61        17.69        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NE 
       36.82        34.16        36.20        36.56        39.55        35.77 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R5 
       25.84        18.94        24.82        28.27         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RI 
       11.15        45.01         1.12        46.65        21.27        47.64 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22H TCGA-E9-A243 
       32.05        42.25        37.74        39.09        40.50        20.12 
TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3Q9 
       38.99         7.13        24.56        12.33         9.47        32.91 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       30.44        23.90         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       15.68        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC 
       39.78        52.96        18.48        30.08        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
       13.94        10.52        14.43        34.55        19.96        55.00 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SA 
       22.09        34.03        17.49        10.16        23.51        16.77 
TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DF 
       24.99        31.30        59.57       216.76        79.10        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       72.10        85.15       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        43.73        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 
       18.12        62.47        11.84        21.24        13.22        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       10.62        24.95        32.75        29.23        25.05        17.06 
TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 
       14.70        14.79         2.63        16.08        15.68        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       19.53        12.36        17.49        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
       36.30        58.52        31.99        58.62        40.08        34.92 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J 
       28.87        24.72        22.32        20.38        26.70        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A6VQ TCGA-OL-A6VR 
       41.92        42.77        26.04        17.36        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
        8.91        47.01        64.21         0.26         9.93        18.81 
TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       20.68        19.27        18.87        17.39        17.26        13.94 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       17.03         3.81        66.84        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       15.35        16.04       108.07 

  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                           0.03                            0.03 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                         282.90                          281.29 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                          26.93                           28.27 
[1] "0.0 - 282.9 (26.9)" "0.0 - 281.3 (28.3)"
[1] "hr=" "1.1"
D49V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 20(10Q23.31) MUTATED        26       17        1        1        99
  DEL PEAK 20(10Q23.31) WILD-TYPE      63       68        5        5       254
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 20(10Q23.31) MUTATED          72         1         52         13
  DEL PEAK 20(10Q23.31) WILD-TYPE       180         1        102         16
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 20(10Q23.31) MUTATED           26        6         0       5
  DEL PEAK 20(10Q23.31) WILD-TYPE         39       14         1       8
D49V3, multiclass
            clus
vv           DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  STAGE I                               26                              63
  STAGE IA                              17                              68
  STAGE IB                               1                               5
  STAGE II                               1                               5
  STAGE IIA                             99                             254
  STAGE IIB                             72                             180
  STAGE III                              1                               1
  STAGE IIIA                            52                             102
  STAGE IIIB                            13                              16
  STAGE IIIC                            26                              39
  STAGE IV                               6                              14
  STAGE TIS                              0                               1
  STAGE X                                5                               8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  DEL PEAK 20(10Q23.31) MUTATED    70 190  38  20
  DEL PEAK 20(10Q23.31) WILD-TYPE 206 434  98  20
D49V4, multiclass
    clus
vv   DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  T1                            70                             206
  T2                           190                             434
  T3                            38                              98
  T4                            20                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  DEL PEAK 20(10Q23.31) MUTATED   142 100  43  29
  DEL PEAK 20(10Q23.31) WILD-TYPE 365 258  76  48
D49V5, multiclass
    clus
vv   DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  N0                           142                             365
  N1                           100                             258
  N2                            43                              76
  N3                            29                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V6, binary
                                 cls
clus                                0   1
  DEL PEAK 20(10Q23.31) MUTATED   274   6
  DEL PEAK 20(10Q23.31) WILD-TYPE 615  16
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 20(10Q23.31) MUTATED    274    6
  DEL PEAK 20(10Q23.31) WILD-TYPE  615   16
   clus
vv  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  0                           274                             615
  1                             6                              16
[1] 2 2
[1] FALSE
D49V7, binary
                                 cls
clus                                0   1
  DEL PEAK 20(10Q23.31) MUTATED   319   1
  DEL PEAK 20(10Q23.31) WILD-TYPE 749  11
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 20(10Q23.31) MUTATED    319    1
  DEL PEAK 20(10Q23.31) WILD-TYPE  749   11
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  FEMALE                           319                             749
  MALE                               1                              11
[1] 2 2
[1] FALSE
D49V8, binary
                                 cls
clus                                0   1
  DEL PEAK 20(10Q23.31) MUTATED   134 155
  DEL PEAK 20(10Q23.31) WILD-TYPE 295 363
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 20(10Q23.31) MUTATED    134  155
  DEL PEAK 20(10Q23.31) WILD-TYPE  295  363
     clus
vv    DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  NO                            134                             295
  YES                           155                             363
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  DEL PEAK 20(10Q23.31) MUTATED                            0
  DEL PEAK 20(10Q23.31) WILD-TYPE                          1
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 20(10Q23.31) MUTATED                             246
  DEL PEAK 20(10Q23.31) WILD-TYPE                           524
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 20(10Q23.31) MUTATED                               41
  DEL PEAK 20(10Q23.31) WILD-TYPE                            159
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 20(10Q23.31) MUTATED                     5                     7
  DEL PEAK 20(10Q23.31) WILD-TYPE                   1                     2
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 20(10Q23.31) MUTATED                                  8
  DEL PEAK 20(10Q23.31) WILD-TYPE                               21
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 20(10Q23.31) MUTATED                    1             11
  DEL PEAK 20(10Q23.31) WILD-TYPE                 16             36
D49V9, multiclass
                                  clus
vv                                 DEL PEAK 20(10Q23.31) MUTATED
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              246
  INFILTRATING LOBULAR CARCINOMA                              41
  MEDULLARY CARCINOMA                                          5
  METAPLASTIC CARCINOMA                                        7
  MIXED HISTOLOGY (PLEASE SPECIFY)                             8
  MUCINOUS CARCINOMA                                           1
  OTHER  SPECIFY                                              11
                                  clus
vv                                 DEL PEAK 20(10Q23.31) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     1
  INFILTRATING DUCTAL CARCINOMA                                524
  INFILTRATING LOBULAR CARCINOMA                               159
  MEDULLARY CARCINOMA                                            1
  METAPLASTIC CARCINOMA                                          2
  MIXED HISTOLOGY (PLEASE SPECIFY)                              21
  MUCINOUS CARCINOMA                                            16
  OTHER  SPECIFY                                                36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 20(10Q23.31) MUTATED                                  0    19
  DEL PEAK 20(10Q23.31) WILD-TYPE                                1    41
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 20(10Q23.31) MUTATED                          63   210
  DEL PEAK 20(10Q23.31) WILD-TYPE                       118   535
D49V11, multiclass
                                  clus
vv                                 DEL PEAK 20(10Q23.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       19
  BLACK OR AFRICAN AMERICAN                                   63
  WHITE                                                      210
                                  clus
vv                                 DEL PEAK 20(10Q23.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         41
  BLACK OR AFRICAN AMERICAN                                    118
  WHITE                                                        535
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V12, binary
                                 cls
clus                                0   1
  DEL PEAK 20(10Q23.31) MUTATED     6 267
  DEL PEAK 20(10Q23.31) WILD-TYPE  33 608
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 20(10Q23.31) MUTATED      6  267
  DEL PEAK 20(10Q23.31) WILD-TYPE   33  608
                        clus
vv                       DEL PEAK 20(10Q23.31) MUTATED
  HISPANIC OR LATINO                                 6
  NOT HISPANIC OR LATINO                           267
                        clus
vv                       DEL PEAK 20(10Q23.31) WILD-TYPE
  HISPANIC OR LATINO                                  33
  NOT HISPANIC OR LATINO                             608
[1] 2 2
[1] FALSE

Clustering(50) Variable = DEL PEAK 21(10Q26.3) MUTATION ANALYSIS
D50V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 21(10Q26.3) MUTATED   266  50
  DEL PEAK 21(10Q26.3) WILD-TYPE 651  97
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           316                            748 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                            50                             97 
$`DEL PEAK 21(10Q26.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-5T-A9QA TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SP 
      129.14       131.67         9.96        31.79        39.32        19.20 
TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CW 
       18.02        73.84        77.19        75.25         5.19       107.93 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D4 TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0T3 
       67.33        33.76        25.22        27.12        17.52        49.84 
TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 
       18.21        21.90        18.61        17.36        60.72        19.20 
TCGA-A2-A25B TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A4RW TCGA-A2-A4RX 
       42.44        33.93        91.07        29.98         7.30        24.39 
TCGA-A2-A4S1 TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26E 
       26.96        30.61        35.67        20.19        25.15        31.36 
TCGA-A7-A2KD TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A6VV 
       22.32        13.74        14.50        21.17        14.73        10.29 
TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A076 
       10.42         8.75         1.02        29.03        31.00        53.98 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07R TCGA-A8-A084 TCGA-A8-A08F 
       18.97        14.01        32.05         8.98        15.06        33.01 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08X 
       12.00        37.05         9.99        31.00         0.99        43.00 
TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09R TCGA-A8-A09T 
       12.00         9.99        49.05        45.07         8.98        19.04 
TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2QH 
        0.99        17.03        38.04         0.95         5.72        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3W6 TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A62Y 
       19.33        14.66        19.79        14.96        13.71        17.42 
TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
       13.58         0.03         1.12         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FV TCGA-AN-A0FW 
        7.46         0.16         0.33         7.96         0.33         0.36 
TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XP TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XW 
        0.33         0.33         0.30         0.33         0.33         5.59 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J4 
       61.35        66.77        47.87        58.95        29.13        52.18 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A12D TCGA-AO-A12F 
       21.53        50.70        72.00        55.33        64.04        48.36 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A54O 
       17.79        24.79        26.93       130.09         5.65        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY 
       19.20         5.26        84.10        75.22        98.93        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AK 
       65.36        83.87       107.21       125.16       101.00       103.86 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24Q TCGA-AR-A24R 
       99.32        17.23        33.73       160.90       104.28       112.77 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A256 TCGA-AR-A2LK 
       77.69        32.58        89.00        99.62        93.83        54.21 
TCGA-AR-A2LL TCGA-AR-A2LO TCGA-AR-A2LR TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0IK 
       66.15        39.39        57.27        33.30        10.59        18.77 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RT TCGA-B6-A0RU 
      140.88       255.68        68.45        81.17        89.46       282.90 
TCGA-B6-A0WX TCGA-B6-A0X1 TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A402 TCGA-B6-A408 
       21.47       245.10        73.51       139.17        70.16        68.12 
TCGA-B6-A409 TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0B3 TCGA-BH-A0B7 TCGA-BH-A0BA 
       18.84        59.84        20.45        39.55        84.13        37.22 
TCGA-BH-A0BJ TCGA-BH-A0BP TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 
       21.70        75.48        49.94        77.95        49.05        44.02 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0GZ TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       24.49        31.00        10.78        23.08        41.00        52.96 
TCGA-BH-A0HW TCGA-BH-A0HY TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18Q TCGA-BH-A18T 
       51.32        50.79        23.05        35.93        55.63         7.36 
TCGA-BH-A1EO TCGA-BH-A1EU TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       91.99        42.28        31.53        97.48        24.62       114.15 
TCGA-BH-A1FH TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 
       36.92        45.63        72.07        26.14        38.60        57.83 
TCGA-BH-A209 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A12W 
      130.16        11.93        11.77        12.66        12.66        12.66 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
        1.87        12.59        11.28        12.03        12.33        12.95 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Y TCGA-C8-A27A TCGA-C8-A3M8 TCGA-C8-A8HP 
       20.25        12.53        12.95        24.56        12.95        13.02 
TCGA-C8-A8HQ TCGA-D8-A13Y TCGA-D8-A142 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       12.49        56.81        13.97        19.20        14.17        17.49 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JK 
       55.50        15.78        12.03        53.00        18.97        20.12 
TCGA-D8-A1JL TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1XB TCGA-D8-A1XF TCGA-D8-A1XJ 
       20.09        21.01        18.58        18.15        15.22        21.80 
TCGA-D8-A1XK TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XZ TCGA-D8-A27F TCGA-D8-A27H 
       14.50        12.99        15.16        15.32        16.04        13.05 
TCGA-D8-A27I TCGA-D8-A27T TCGA-E2-A108 TCGA-E2-A10C TCGA-E2-A14R TCGA-E2-A14T 
       14.43        13.08        27.52        40.11        38.60        75.98 
TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A158 TCGA-E2-A159 
       32.02        69.34        63.62        69.96        14.79        25.05 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1IE 
       20.71        21.63        19.56        56.94        14.07        77.65 
TCGA-E2-A1IN TCGA-E2-A1L7 TCGA-E2-A1LB TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI 
       22.19        60.36        75.81        50.07       106.75       102.61 
TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF 
        8.28        34.92        38.76        39.55        41.62        35.24 
TCGA-E9-A1NI TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RF 
        9.86        34.95         2.56        48.23        40.24         6.58 
TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A244 TCGA-E9-A247 
       46.59        34.45        41.03        41.72         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A54Y TCGA-E9-A5FK 
        1.94        29.72        38.07        30.18        23.84        26.70 
TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 
       28.77        22.82        40.41        29.82        23.11         7.86 
TCGA-EW-A1PC TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A6S9 TCGA-EW-A6SD 
        6.15        52.73        25.91        17.49        15.22        33.21 
TCGA-GI-A2C9 TCGA-GM-A2DD TCGA-GM-A2DK TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YW 
      109.87        75.02        86.96        69.30         2.60        11.84 
TCGA-JL-A3YX TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A73Z TCGA-LL-A8F5 
       11.57        15.32        14.47        22.26         7.46        19.59 
TCGA-LQ-A4E4 TCGA-OL-A5RW TCGA-OL-A66I TCGA-OL-A6VO TCGA-PE-A5DE TCGA-PL-A8LX 
       27.91        36.36        23.47        28.21        86.96         0.16 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA17 TCGA-UU-A93S 
       18.48        21.07        13.94         3.81 

$`DEL PEAK 21(10Q26.3) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
       42.81        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q 
       13.68         7.96        28.01        18.21       143.15        78.41 
TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      121.94        87.25        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
      136.73        99.12        24.79       114.81        92.48        88.60 
TCGA-A2-A0CR TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D3 TCGA-A2-A0EM 
      107.93        98.99        56.81        34.55        61.58       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
       89.36        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       99.19        54.64        44.88        50.43        44.28        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC 
        8.38        20.52        17.46        18.90        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL 
       25.28        50.47        21.67        49.48        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 
       31.73        23.77        23.47        22.45        20.25        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       16.47        52.47       107.70        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       10.59        36.23        39.65        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 
       35.93        50.37        50.83        21.30        23.21        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 
       21.90        38.30        35.31        34.29        35.47        37.45 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F 
       33.11        29.79        31.73        23.61        29.56        24.26 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.74        23.80        21.73        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.29        11.28        13.41        14.70        11.97        14.93 
TCGA-A7-A4SF TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A8-A06O 
       17.92        12.10        10.72        11.05         9.37        13.02 
TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
       13.02        17.98        53.06        26.01         1.02        17.03 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07O 
        9.01        43.00        19.99        18.97        12.00         9.99 
TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 
       10.98         7.99        24.99         9.99        45.07        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08O 
       13.02         0.99        38.01        28.96        19.96        31.00 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
       33.01       112.08        40.01        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09K 
       41.98         9.99        12.00         1.02        50.04        29.98 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       33.07         1.02        25.02        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-AC-A23E 
       12.00        19.04        13.02        21.04        27.02        22.95 
TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
       73.91         1.48        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A3BB 
       90.71        60.92        87.12        26.04        74.14        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM 
        6.48        16.31        14.83        22.19        24.13        25.05 
TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE 
       14.99        16.57        15.48        23.24        24.79        29.26 
TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A6IV TCGA-AC-A6IX 
       16.80        14.53        19.33        11.44        18.67        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        1.68         8.22        20.19         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         0.33         6.44         5.65         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL 
        7.17         6.90         7.04         0.33         0.33         5.36 
TCGA-AN-A0XO TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03O 
       12.33         0.33         0.33         5.33        80.28        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J6 
       95.70        68.75        32.78        21.40        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF 
       20.32        22.36        53.03        50.86        76.77        65.10 
TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 
       26.24        50.24        62.04        71.80       115.27        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E 
      108.72       106.78       108.03        90.58        98.27        57.30 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR 
       41.62        40.57        14.73        82.62        61.87        70.39 
TCGA-AO-A1KS TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TQ 
        0.53        15.62        32.52         2.56       140.55        98.33 
TCGA-AR-A0TT TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A1AI 
      109.02        64.83       107.24       133.22       134.14       108.36 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS 
       97.68        98.33        96.00        86.07        93.90        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24L 
       94.29        61.28        86.53        86.43        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24S TCGA-AR-A24T 
      120.33        99.78       118.59         2.76        97.84       105.27 
TCGA-AR-A24V TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
      105.30        98.76        98.66        93.30        85.64        71.05 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ 
      166.42        20.25        86.53        63.62        38.17        40.54 
TCGA-AR-A5QM TCGA-AR-A5QP TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 
       73.35        38.96        77.62       143.38       281.29        12.13 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.72       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RH 
      233.62       127.33        84.59       165.76       129.07       212.25 
TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      234.28        78.02       263.28       162.05       102.77       140.48 
TCGA-B6-A0RS TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      100.70       157.41        97.48       188.68        79.63        18.35 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      113.79       206.86       129.70        28.27        68.94        58.88 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       43.59       101.52       170.17        37.87         7.07        85.35 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
      103.63        71.15        62.93        25.55        63.09        81.44 
TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BC 
       40.83        39.16        70.22        81.63        51.68        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       18.21        43.53        61.51        74.89        61.68        72.23 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0C0 TCGA-BH-A0C3 
       74.14        76.60        53.95        45.57        41.75        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        45.83        77.98        23.44        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       13.91        78.28        17.26        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       38.47        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EI 
       14.30         9.63        44.81        46.19        32.58        24.43 
TCGA-BH-A0GY TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HB 
       30.35        15.16        37.78        53.26        24.56        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
       20.38         5.85         2.50        13.61        36.85        12.89 
TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       27.25         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
       32.91         4.90        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A18V 
       37.74        30.28        37.55        66.05        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
       67.50       113.82        82.85        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE 
       17.69        25.81        89.16       120.62        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
      122.89        63.35        55.00       144.59        72.07        28.14 
TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       83.31        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       20.88        18.64        23.51         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q 
       18.87        21.76         9.44        11.77        11.77        12.66 
TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56         3.16        13.51 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92         4.11         4.08        12.33        10.92        11.34 
TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HO TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 
        0.16        10.42        12.33        12.36         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HR 
        9.53         0.03         9.50        14.43        33.99        13.41 
TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 
       19.46        20.88        13.25        20.58        14.17        13.48 
TCGA-D8-A146 TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH TCGA-D8-A1JJ 
       21.14        16.50        18.15        18.90        14.01        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 
       19.40        20.38        12.20        13.32        14.70        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XD 
       16.73        25.74        23.90        27.58        12.39        17.16 
TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.73        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       16.31        16.64        43.04        16.54        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27K TCGA-D8-A27L 
       14.24        14.14        17.42        13.45        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W 
       13.48         4.80         1.61        10.09        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18        12.66        25.22 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E 
       43.00        34.42        46.59        40.41        37.51        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S 
       28.87        47.15        44.68        40.96        38.24        33.17 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A154 
       43.33        34.26        31.96        18.51        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15G 
       21.04        23.87        23.34        22.82        17.29        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       50.79        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        16.47        37.25        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO 
       33.73        33.70        28.44        59.18         3.88        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LE 
       11.08        54.18        73.64        19.66        24.59        28.90 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 
        8.75        43.04        26.99        34.55        43.56        30.61 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 
       34.29        17.69        34.82        32.88        36.82        22.29 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH 
       34.16        36.20        36.56        35.77        25.84        18.94 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA 
       24.82        28.27         6.12         3.02        11.15        45.01 
TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A227 
       32.09         1.12        46.65        21.27        47.64        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22G TCGA-E9-A22H 
       42.25        37.74        39.09        38.37        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3Q9 
       20.12         7.13        24.56        12.33         9.47        32.91 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE 
       30.44        23.90         0.79        25.81        26.40        27.85 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 
       16.57        15.68        25.94        29.95        29.85        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB 
       39.78        52.96        18.48        30.08        18.90        19.99 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
       13.94        10.52        14.43        34.55        19.96        55.00 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB 
       22.09        34.03        10.16        23.51        16.77        24.99 
TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
       31.30         7.40        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       70.85        72.10        85.15       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 
       85.35       110.50        38.20        43.73        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       13.55        18.12        62.47        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y 
       17.06        14.70        14.79         2.63        16.08        15.68 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-MS-A51U TCGA-OK-A5Q2 
       14.50        19.53        12.36        17.49        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
       36.30        58.52        31.99        58.62        40.08        34.92 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J 
       28.87        24.72        22.32        20.38        26.70        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ 
       41.92        42.77        26.04        17.36        14.07        19.73 
TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PL-A8LY TCGA-PL-A8LZ 
       40.11         8.91        47.01        64.21         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       18.81        20.68        19.27        13.84        18.87        17.39 
TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       17.26        17.03        66.84        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                        282.90                         281.29 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                         26.42                          28.44 
[1] "0.0 - 282.9 (26.4)" "0.0 - 281.3 (28.4)"
[1] "hr=" "1.4"
D50V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 21(10Q26.3) MUTATED        25       14        1        1       101
  DEL PEAK 21(10Q26.3) WILD-TYPE      64       71        5        5       252
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 21(10Q26.3) MUTATED          75         1         57         11
  DEL PEAK 21(10Q26.3) WILD-TYPE       177         1         97         18
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 21(10Q26.3) MUTATED           19        8         0       4
  DEL PEAK 21(10Q26.3) WILD-TYPE         46       12         1       9
D50V3, multiclass
            clus
vv           DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  STAGE I                              25                             64
  STAGE IA                             14                             71
  STAGE IB                              1                              5
  STAGE II                              1                              5
  STAGE IIA                           101                            252
  STAGE IIB                            75                            177
  STAGE III                             1                              1
  STAGE IIIA                           57                             97
  STAGE IIIB                           11                             18
  STAGE IIIC                           19                             46
  STAGE IV                              8                             12
  STAGE TIS                             0                              1
  STAGE X                               4                              9
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 21(10Q26.3) MUTATED    67 192  40  18
  DEL PEAK 21(10Q26.3) WILD-TYPE 209 432  96  22
D50V4, multiclass
    clus
vv   DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  T1                           67                            209
  T2                          192                            432
  T3                           40                             96
  T4                           18                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 21(10Q26.3) MUTATED   140 105  45  22
  DEL PEAK 21(10Q26.3) WILD-TYPE 367 253  74  55
D50V5, multiclass
    clus
vv   DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  N0                          140                            367
  N1                          105                            253
  N2                           45                             74
  N3                           22                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V6, binary
                                cls
clus                               0   1
  DEL PEAK 21(10Q26.3) MUTATED   268   9
  DEL PEAK 21(10Q26.3) WILD-TYPE 621  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10Q26.3) MUTATED    268    9
  DEL PEAK 21(10Q26.3) WILD-TYPE  621   13
   clus
vv  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  0                          268                            621
  1                            9                             13
[1] 2 2
[1] FALSE
D50V7, binary
                                cls
clus                               0   1
  DEL PEAK 21(10Q26.3) MUTATED   317   2
  DEL PEAK 21(10Q26.3) WILD-TYPE 751  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10Q26.3) MUTATED    317    2
  DEL PEAK 21(10Q26.3) WILD-TYPE  751   10
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  FEMALE                          317                            751
  MALE                              2                             10
[1] 2 2
[1] FALSE
D50V8, binary
                                cls
clus                               0   1
  DEL PEAK 21(10Q26.3) MUTATED   128 156
  DEL PEAK 21(10Q26.3) WILD-TYPE 301 362
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10Q26.3) MUTATED    128  156
  DEL PEAK 21(10Q26.3) WILD-TYPE  301  362
     clus
vv    DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  NO                           128                            301
  YES                          156                            362
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 21(10Q26.3) MUTATED                            0
  DEL PEAK 21(10Q26.3) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 21(10Q26.3) MUTATED                             255
  DEL PEAK 21(10Q26.3) WILD-TYPE                           515
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 21(10Q26.3) MUTATED                               32
  DEL PEAK 21(10Q26.3) WILD-TYPE                            168
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 21(10Q26.3) MUTATED                     5                     7
  DEL PEAK 21(10Q26.3) WILD-TYPE                   1                     2
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 21(10Q26.3) MUTATED                                  8
  DEL PEAK 21(10Q26.3) WILD-TYPE                               21
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 21(10Q26.3) MUTATED                    2              9
  DEL PEAK 21(10Q26.3) WILD-TYPE                 15             38
D50V9, multiclass
                                  clus
vv                                 DEL PEAK 21(10Q26.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             255
  INFILTRATING LOBULAR CARCINOMA                             32
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       7
  MIXED HISTOLOGY (PLEASE SPECIFY)                            8
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                              9
                                  clus
vv                                 DEL PEAK 21(10Q26.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               515
  INFILTRATING LOBULAR CARCINOMA                              168
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         2
  MIXED HISTOLOGY (PLEASE SPECIFY)                             21
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 21(10Q26.3) MUTATED                                  0    23
  DEL PEAK 21(10Q26.3) WILD-TYPE                                1    37
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 21(10Q26.3) MUTATED                          61   206
  DEL PEAK 21(10Q26.3) WILD-TYPE                       120   539
D50V11, multiclass
                                  clus
vv                                 DEL PEAK 21(10Q26.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      23
  BLACK OR AFRICAN AMERICAN                                  61
  WHITE                                                     206
                                  clus
vv                                 DEL PEAK 21(10Q26.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        37
  BLACK OR AFRICAN AMERICAN                                   120
  WHITE                                                       539
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V12, binary
                                cls
clus                               0   1
  DEL PEAK 21(10Q26.3) MUTATED     5 265
  DEL PEAK 21(10Q26.3) WILD-TYPE  34 610
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10Q26.3) MUTATED      5  265
  DEL PEAK 21(10Q26.3) WILD-TYPE   34  610
                        clus
vv                       DEL PEAK 21(10Q26.3) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                          265
                        clus
vv                       DEL PEAK 21(10Q26.3) WILD-TYPE
  HISPANIC OR LATINO                                 34
  NOT HISPANIC OR LATINO                            610
[1] 2 2
[1] FALSE

Clustering(51) Variable = DEL PEAK 22(11P15.5) MUTATION ANALYSIS
D51V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 22(11P15.5) MUTATED   262  45
  DEL PEAK 22(11P15.5) WILD-TYPE 655 102
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           307                            757 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                            45                            102 
$`DEL PEAK 22(11P15.5) MUTATED`
TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CO TCGA-A2-A0CX 
       28.01        18.02        73.84        87.25       114.81        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EY TCGA-A2-A0SU 
       67.33        34.55        79.76        35.05        63.29        54.64 
TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A0YT 
       50.43        17.52        21.90        18.61        31.73        23.77 
TCGA-A2-A25B TCGA-A2-A25E TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XX TCGA-A2-A3Y0 
       42.44       105.34        33.93        91.07        47.31        50.83 
TCGA-A2-A4RW TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
        7.30        35.31        35.67        31.73        20.19        25.15 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26I TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A56D 
       31.36        24.26        21.73        14.93        14.50        14.73 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06R 
       10.29         9.37        10.42         8.75        13.02        17.98 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A07E TCGA-A8-A07G 
       29.03        31.00         1.02        17.03        19.99        18.97 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08F 
        8.98        24.99        36.95        13.02         0.99        33.01 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08X 
       12.00        37.05         9.99        31.00         0.99        43.00 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09T 
        9.99        12.00         1.02        45.07        33.07        19.04 
TCGA-A8-A0A2 TCGA-A8-A0AB TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FG 
       19.04        17.03        22.95        73.05        99.35        60.92 
TCGA-AC-A2QH TCGA-AC-A3W5 TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A7VC TCGA-AC-A8OQ 
       33.04        16.57        16.80        14.96         0.03         1.12 
TCGA-AN-A041 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        0.23         2.96         1.78         7.46         0.16         0.33 
TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XS TCGA-AN-A0XT 
        7.04         0.36         0.33         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AO-A03M TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A0J2 TCGA-AO-A0J4 
        0.33        61.35        95.70        47.87        32.78        52.18 
TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A12F 
       20.32        53.03        50.70        72.00        55.33        48.36 
TCGA-AO-A12G TCGA-AO-A1KS TCGA-AQ-A04J TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AR-A0TP 
       41.62         0.53        26.93        15.62         2.56       140.55 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A1AI TCGA-AR-A1AW 
      109.02        75.22        64.83        65.36       108.36        86.53 
TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24Z 
      160.90        94.22       104.28        97.84       105.27        98.66 
TCGA-AR-A251 TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LO TCGA-B6-A0I2 TCGA-B6-A0I9 
       99.62        93.83        66.15        39.39       143.38        12.13 
TCGA-B6-A0IE TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0RG TCGA-B6-A0RS 
       65.72       233.62        18.77       165.76        68.45       100.70 
TCGA-B6-A0RU TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A402 
      282.90        18.35        21.47       101.52       139.17        70.16 
TCGA-B6-A408 TCGA-B6-A409 TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B3 
       68.12        18.84        59.84        20.45        25.55        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BF 
       39.16        70.22        81.63        37.22        32.02        43.53 
TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       74.89        75.48        76.60        41.75        44.02        89.06 
TCGA-BH-A0DE TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DZ TCGA-BH-A0EE 
       77.98        29.98        13.91        78.28        16.27        31.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A18L TCGA-BH-A18Q 
       52.96        26.50        27.25        50.79        26.66        55.63 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EY TCGA-BH-A1FC 
        7.36        51.39        51.16        67.50        17.69       114.15 
TCGA-BH-A1FH TCGA-BH-A203 TCGA-BH-A42T TCGA-BH-A5J0 TCGA-BH-A8FZ TCGA-C8-A12L 
       36.92        38.60        10.52        23.51        18.87        11.93 
TCGA-C8-A12M TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A130 
       11.77        11.77        12.66        12.66        12.66         3.16 
TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ 
        1.87        12.92         4.08        10.92        11.34         0.16 
TCGA-C8-A1HK TCGA-C8-A1HN TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27A 
       12.03        12.95        12.36        12.95         9.50        24.56 
TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       19.46        56.81        20.88        13.97        14.17        13.48 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JK TCGA-D8-A1JP 
       14.17        17.49        15.78        18.90        20.12        21.01 
TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XS 
       17.79        25.74        21.80        14.50        16.41        16.31 
TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27R 
       12.99        43.04        15.32        16.04        13.05        10.09 
TCGA-D8-A27W TCGA-E2-A10C TCGA-E2-A14R TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 
       12.26        40.11        38.60        31.96        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15M 
       69.96        14.79        25.05        20.71        18.21        11.05 
TCGA-E2-A1AZ TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IH TCGA-E2-A1L7 TCGA-E2-A1L8 
       76.57        37.25        77.65        33.73        60.36        73.64 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A9RU 
       28.90       106.75       102.61         8.75        43.04        17.69 
TCGA-E9-A1N5 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NH 
       36.82        36.20        36.56        41.62        35.24        18.94 
TCGA-E9-A1R2 TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A228 TCGA-E9-A22B 
       34.95         6.58        21.27        46.59        42.25        38.37 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3HO 
       41.72        40.73         0.69        12.33        29.72        38.07 
TCGA-E9-A3QA TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1J1 TCGA-EW-A1OZ TCGA-EW-A1P8 
       30.18        25.81        26.40        18.90        40.41         7.86 
TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FR 
       18.90         6.15        13.94        14.43        19.96        55.00 
TCGA-EW-A3U0 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 
       17.49        15.22        16.77        33.21         7.40       109.87 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A3XL TCGA-LD-A7W5 
       75.02        70.85        85.15       115.69        69.30         7.10 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A7T0 
       15.32        14.70        14.79         2.63        16.08        12.36 
TCGA-LL-A8F5 TCGA-LQ-A4E4 TCGA-OL-A5D6 TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K 
       19.59        27.91        36.30        20.38        23.47        41.92 
TCGA-OL-A6VO TCGA-PE-A5DC TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-UL-AAZ6 TCGA-UU-A93S 
       28.21        47.01        18.81        18.48        17.03         3.81 
TCGA-Z7-A8R5 
      108.07 

$`DEL PEAK 22(11P15.5) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF 
       48.36         9.96         8.52        14.37        43.43        48.10 
TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM 
       14.27        47.24        20.88        13.68        31.79         7.96 
TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R 
       39.32        19.20        18.21       143.15        78.41       121.94 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
       24.79        92.48        88.60       107.93        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
        5.19        98.99       107.93        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72        89.36        80.28       118.45        74.40        72.00 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SV 
       34.29        31.82        61.94        24.72        99.19        27.12 
TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.88        44.28        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FV 
       50.47        21.67        49.48        19.33        48.46        23.47 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 
       17.36        60.72        22.45        20.25        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F 
       16.47        52.47       107.70        17.19        18.15        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY 
       36.23        39.65        29.98        32.75        56.28        35.93 
TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
       50.37        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26H 
       33.11        29.79        23.61        29.56        23.74        23.80 
TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 
       20.61        22.32        11.34        10.59        10.29        11.28 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF 
       13.41        14.70        11.97        13.74        21.17        17.92 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T 
       12.10        10.72        11.05        13.02         1.02        53.06 
TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07I 
       26.01        53.98         9.01        43.00        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07W 
       12.00        32.05         9.99        10.98         7.99         9.99 
TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08O 
       45.07        15.06        38.01        28.96        19.96        31.00 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
       33.01       112.08        40.01        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09K 
       41.98        12.00         9.99        50.04        49.05        29.98 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
        1.02        25.02         8.98        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AD 
       12.00        13.02        21.04         0.99        27.02        38.04 
TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FE 
        0.95        73.91         5.72         1.48        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ 
       90.71        87.12        26.04        74.14        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ 
       32.45         6.48        16.31        14.83        22.19        24.13 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       25.05        14.99        19.79        15.48        23.24        24.79 
TCGA-AC-A4ZE TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y 
       29.26        14.53        19.33        11.44        13.71        17.42 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP 
       18.67        13.58        12.26         1.68         8.22        20.19 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A049 
        1.32         2.30         0.33         0.33         0.33         0.62 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        1.71         9.96         7.36         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.33         0.33         5.36        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O 
        0.33         5.33         5.59        80.28        66.77        81.63 
TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J6 
       68.75        58.95        29.13        21.40        26.04        37.48 
TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       22.36        21.53        50.86        76.77        65.10        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       50.24        62.04        71.80       115.27        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03        90.58        98.27        64.04        57.30 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KT 
       40.57        14.73        82.62        61.87        70.39        17.79 
TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 
       24.79       130.09         5.65        32.52        32.91        19.20 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ 
       98.33         5.26        84.10        98.93        55.86       107.24 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AJ 
      133.22        83.87       134.14       107.21       125.16       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      103.86        97.68        98.33        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX 
       99.32        17.23        37.81        94.29        61.28        86.43 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       33.73        50.89       120.33        99.78       118.59         2.76 
TCGA-AR-A24R TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 
      112.77        77.69       105.30        32.58        98.76        89.00 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       93.30        85.64        71.05       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM 
       54.21        63.62        38.17        40.54        57.27        73.35 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I5 TCGA-B6-A0IA 
       33.30        38.96        10.59        77.62       281.29       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IM TCGA-B6-A0IN 
      129.57        50.70       146.50       112.37       127.33        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      129.07       140.88       255.68       212.25       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
       78.02       263.28       162.05       102.77       140.48        89.46 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0WZ 
      157.41        97.48       188.68        79.63       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.88        43.59 
TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A40B 
       73.51       170.17        37.87         7.07        85.35       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B7 
       71.15        62.93        63.09        81.44        40.83        84.13 
TCGA-BH-A0B9 TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       51.68        18.21        61.51        21.70        61.68        72.23 
TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       74.14        53.95        45.57        49.94        77.95        49.05 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DO TCGA-BH-A0DP 
       90.97        45.83        23.44        38.01        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 
        3.22         2.56        38.47        67.86        70.88         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       15.68        14.30         9.63        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       24.49        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HI TCGA-BH-A0HK 
       53.26        24.56        23.08        41.00        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0RX 
        2.50        13.61        36.85        12.89        51.32         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N 
        4.90        35.93        20.12        90.84        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       30.28        37.55        66.05        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        12.00        55.69        49.58        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE 
       89.16        97.48        24.62       120.62        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
      122.89        63.35        55.00        45.63        72.07       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       72.07        28.14        26.14        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       10.65         6.44        20.12       109.28        20.88        18.64 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N 
        9.63         5.26         9.70        21.76         9.44        11.77 
TCGA-C8-A12O TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A131 
       12.66        12.66        12.66        48.53        12.56        13.51 
TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HI TCGA-C8-A1HL TCGA-C8-A1HM 
       12.59         4.11        12.33        11.28        10.42        12.33 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.33        20.25        12.53         8.28         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
        0.03        14.43        33.99        12.95        13.02        12.49 
TCGA-C8-A8HR TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1JA 
       13.41        13.25        20.58        21.14        19.20        16.50 
TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       55.50        18.15        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT 
       20.09        20.09        19.40        20.38        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       14.70        18.58        16.73        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM 
       12.39        17.16        15.22        14.73        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1Y0 
       55.30        15.85        16.64        15.16        16.54        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I 
        9.93        14.24        14.14        17.42        13.45        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T 
       48.03        16.41        13.48         4.80         1.61        13.08 
TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.53        33.37        18.51        21.67        16.18        12.66 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       25.22        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       37.51        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.24        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14Y TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15A 
       69.34        23.24        19.43        21.04        23.87        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       22.82        17.29        21.63        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        50.79        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       51.39        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       16.47        37.41        70.36        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L9 
        3.88        22.19        60.99        11.08        54.18        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX 
       24.59        75.81        50.07        26.99        34.55        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N3 
        8.28        30.61        34.92        38.76        34.29        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NG 
       32.88        22.29        34.16        39.55        35.77        25.84 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
        9.86        24.82        28.27         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22A 
       46.65        47.64        34.45        32.05        37.74        39.09 
TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       41.03        40.50        20.12        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       24.56         9.47        32.91        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
       26.70         0.79        27.85        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.21        13.25        16.57        15.68        28.77        25.94 
TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 
       22.82        29.95        29.85        41.13        39.78        52.96 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PE 
       29.82        23.11        18.48        30.08        19.99        10.52 
TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 
       34.55        52.73        25.91        22.09        34.03        10.16 
TCGA-EW-A424 TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       23.51        24.99        31.30        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       83.34        72.10        86.96       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        43.73        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U 
       18.12         2.60        62.47        11.84        11.57        21.24 
TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
       13.22        13.28        10.62        24.95        32.75        29.23 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A73Y TCGA-LL-A73Z 
       25.05        17.06        14.47        22.26        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A9Q3 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D7 
       14.50        19.53        17.49        22.39         2.10        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       31.99        58.62        40.08        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N 
       24.72        22.32        26.70        65.62        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD 
       17.36        14.07        19.73        40.11         8.91        64.21 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA0Z 
       86.96         0.16         0.26         9.93        21.07        20.68 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       19.27        13.84        18.87        17.39        17.26        13.94 
TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A 
       66.84        11.41        52.96        29.03        15.35        16.04 
TCGA-Z7-A8R6 
      107.05 

  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                        282.90                         281.29 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                         25.81                          28.50 
[1] "0.0 - 282.9 (25.8)" "0.0 - 281.3 (28.5)"
[1] "hr=" "1.3"
D51V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 22(11P15.5) MUTATED        20       16        0        1       104
  DEL PEAK 22(11P15.5) WILD-TYPE      69       69        6        5       249
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 22(11P15.5) MUTATED          77         0         49         10
  DEL PEAK 22(11P15.5) WILD-TYPE       175         2        105         19
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 22(11P15.5) MUTATED           21        4         1       5
  DEL PEAK 22(11P15.5) WILD-TYPE         44       16         0       8
D51V3, multiclass
            clus
vv           DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  STAGE I                              20                             69
  STAGE IA                             16                             69
  STAGE IB                              0                              6
  STAGE II                              1                              5
  STAGE IIA                           104                            249
  STAGE IIB                            77                            175
  STAGE III                             0                              2
  STAGE IIIA                           49                            105
  STAGE IIIB                           10                             19
  STAGE IIIC                           21                             44
  STAGE IV                              4                             16
  STAGE TIS                             1                              0
  STAGE X                               5                              8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 22(11P15.5) MUTATED    60 200  33  15
  DEL PEAK 22(11P15.5) WILD-TYPE 216 424 103  25
D51V4, multiclass
    clus
vv   DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  T1                           60                            216
  T2                          200                            424
  T3                           33                            103
  T4                           15                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 22(11P15.5) MUTATED   144  96  41  24
  DEL PEAK 22(11P15.5) WILD-TYPE 363 262  78  53
D51V5, multiclass
    clus
vv   DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  N0                          144                            363
  N1                           96                            262
  N2                           41                             78
  N3                           24                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V6, binary
                                cls
clus                               0   1
  DEL PEAK 22(11P15.5) MUTATED   265   4
  DEL PEAK 22(11P15.5) WILD-TYPE 624  18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(11P15.5) MUTATED    265    4
  DEL PEAK 22(11P15.5) WILD-TYPE  624   18
   clus
vv  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  0                          265                            624
  1                            4                             18
[1] 2 2
[1] FALSE
D51V7, binary
                                cls
clus                               0   1
  DEL PEAK 22(11P15.5) MUTATED   304   5
  DEL PEAK 22(11P15.5) WILD-TYPE 764   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(11P15.5) MUTATED    304    5
  DEL PEAK 22(11P15.5) WILD-TYPE  764    7
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  FEMALE                          304                            764
  MALE                              5                              7
[1] 2 2
[1] FALSE
D51V8, binary
                                cls
clus                               0   1
  DEL PEAK 22(11P15.5) MUTATED   129 154
  DEL PEAK 22(11P15.5) WILD-TYPE 300 364
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(11P15.5) MUTATED    129  154
  DEL PEAK 22(11P15.5) WILD-TYPE  300  364
     clus
vv    DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  NO                           129                            300
  YES                          154                            364
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 22(11P15.5) MUTATED                            0
  DEL PEAK 22(11P15.5) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 22(11P15.5) MUTATED                             250
  DEL PEAK 22(11P15.5) WILD-TYPE                           520
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 22(11P15.5) MUTATED                               30
  DEL PEAK 22(11P15.5) WILD-TYPE                            170
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 22(11P15.5) MUTATED                     4                     2
  DEL PEAK 22(11P15.5) WILD-TYPE                   2                     7
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 22(11P15.5) MUTATED                                 12
  DEL PEAK 22(11P15.5) WILD-TYPE                               17
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 22(11P15.5) MUTATED                    2              9
  DEL PEAK 22(11P15.5) WILD-TYPE                 15             38
D51V9, multiclass
                                  clus
vv                                 DEL PEAK 22(11P15.5) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             250
  INFILTRATING LOBULAR CARCINOMA                             30
  MEDULLARY CARCINOMA                                         4
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                           12
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                              9
                                  clus
vv                                 DEL PEAK 22(11P15.5) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               520
  INFILTRATING LOBULAR CARCINOMA                              170
  MEDULLARY CARCINOMA                                           2
  METAPLASTIC CARCINOMA                                         7
  MIXED HISTOLOGY (PLEASE SPECIFY)                             17
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 22(11P15.5) MUTATED                                  0    19
  DEL PEAK 22(11P15.5) WILD-TYPE                                1    41
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 22(11P15.5) MUTATED                          69   190
  DEL PEAK 22(11P15.5) WILD-TYPE                       112   555
D51V11, multiclass
                                  clus
vv                                 DEL PEAK 22(11P15.5) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      19
  BLACK OR AFRICAN AMERICAN                                  69
  WHITE                                                     190
                                  clus
vv                                 DEL PEAK 22(11P15.5) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        41
  BLACK OR AFRICAN AMERICAN                                   112
  WHITE                                                       555
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V12, binary
                                cls
clus                               0   1
  DEL PEAK 22(11P15.5) MUTATED     8 244
  DEL PEAK 22(11P15.5) WILD-TYPE  31 631
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(11P15.5) MUTATED      8  244
  DEL PEAK 22(11P15.5) WILD-TYPE   31  631
                        clus
vv                       DEL PEAK 22(11P15.5) MUTATED
  HISPANIC OR LATINO                                8
  NOT HISPANIC OR LATINO                          244
                        clus
vv                       DEL PEAK 22(11P15.5) WILD-TYPE
  HISPANIC OR LATINO                                 31
  NOT HISPANIC OR LATINO                            631
[1] 2 2
[1] FALSE

Clustering(52) Variable = DEL PEAK 23(11Q13.1) MUTATION ANALYSIS
D52V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 23(11Q13.1) MUTATED   206  32
  DEL PEAK 23(11Q13.1) WILD-TYPE 711 115
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                           238                            826 
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                            32                            115 
$`DEL PEAK 23(11Q13.1) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SJ 
      129.14        42.81         9.96        14.37        43.43        13.68 
TCGA-A1-A0SO TCGA-A2-A04V TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CX 
       28.01        63.12        99.12        24.79       114.81        56.81 
TCGA-A2-A0D4 TCGA-A2-A0ET TCGA-A2-A0SX TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0YT 
       25.22        35.05        50.43        49.84        20.52        23.77 
TCGA-A2-A1FX TCGA-A2-A1G4 TCGA-A2-A25B TCGA-A2-A3XS TCGA-A2-A3XX TCGA-A2-A3Y0 
       60.72        19.56        42.44        33.93        47.31        50.83 
TCGA-A7-A0CE TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26E 
       35.31        29.79        31.73        20.19        25.15        31.36 
TCGA-A7-A26J TCGA-A7-A3IZ TCGA-A7-A4SD TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06T 
       20.61        10.59        14.50        13.02         1.02        53.06 
TCGA-A8-A06Z TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07W TCGA-A8-A086 TCGA-A8-A08G 
        1.02         9.01        43.00         9.99        13.02        19.96 
TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A093 
       37.05         0.99        33.01        43.00        33.01        17.95 
TCGA-A8-A097 TCGA-A8-A09B TCGA-A8-A09K TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A0A2 
       12.00        12.00        29.98         8.98        19.04        19.04 
TCGA-A8-A0A6 TCGA-AC-A23E TCGA-AC-A2BM TCGA-AC-A2FE TCGA-AC-A2FM TCGA-AC-A2QH 
       21.04        22.95        99.35        86.66        26.04        33.04 
TCGA-AC-A3HN TCGA-AC-A5XU TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A7VC 
       16.31        14.96        18.67        13.58        12.26         0.03 
TCGA-AN-A03Y TCGA-AN-A04A TCGA-AN-A0FT TCGA-AN-A0FZ TCGA-AN-A0XS TCGA-AN-A0XU 
        0.33         2.96         7.04         0.33         0.33         0.33 
TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A0J3 TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JD 
        5.59        61.35        21.40        20.32        53.03        72.00 
TCGA-AO-A0JG TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A12E TCGA-AO-A1KT TCGA-AQ-A04J 
       26.24        55.33       115.27        57.30        17.79        26.93 
TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AR-A0TV TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       15.62         2.56        75.22        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AK TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A24H TCGA-AR-A24L 
      134.14       103.86        61.28        86.53       160.90        94.22 
TCGA-AR-A24R TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A2LK TCGA-AR-A2LO TCGA-B6-A0I9 
      112.77       105.30        98.66        54.21        39.39        12.13 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0RL TCGA-B6-A0RU TCGA-B6-A0WX TCGA-B6-A1KF 
       18.77       127.33        81.17       282.90        21.47       101.52 
TCGA-B6-A1KN TCGA-B6-A402 TCGA-B6-A40B TCGA-BH-A0AV TCGA-BH-A0B5 TCGA-BH-A0BA 
      139.17        70.16       103.63        59.84        70.22        37.22 
TCGA-BH-A0BD TCGA-BH-A0BL TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE 
       18.21        74.89        44.02        89.06        45.83        77.98 
TCGA-BH-A0DL TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ 
       78.28        14.30         9.63        31.00        24.43        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HA TCGA-BH-A0HX TCGA-BH-A18I TCGA-BH-A18L 
       15.16        23.08        52.96        27.25        35.93        26.66 
TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1EW TCGA-BH-A1F8 
       30.28        37.55        67.50       113.82        55.69        24.62 
TCGA-BH-A201 TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A8FY TCGA-C8-A12M 
       28.14         6.44        10.52        18.64         9.70        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG 
       12.66        12.66        12.66         4.08        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HO TCGA-C8-A26W 
       11.28         0.16        12.03        10.42        12.33        12.53 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
       12.95         8.28        24.56        14.43        33.99        12.95 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-D8-A13Z TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       13.02        12.49        20.88        13.48        19.20        14.17 
TCGA-D8-A1JE TCGA-D8-A1JI TCGA-D8-A1X6 TCGA-D8-A1XF TCGA-D8-A1XS TCGA-D8-A1XU 
       18.90        18.97        17.79        15.22        16.31        12.99 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A27G TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A109 
       15.32        15.52        13.45        12.26        43.00        46.59 
TCGA-E2-A10C TCGA-E2-A14O TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A15E TCGA-E2-A15G 
       40.11        44.68        38.60        34.26        20.71        18.21 
TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IH 
       50.79        56.94        51.39        16.47        37.25        33.73 
TCGA-E2-A1IU TCGA-E2-A1L8 TCGA-E2-A2P6 TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU 
       11.08        73.64        34.55        34.92        34.29        17.69 
TCGA-E9-A1N5 TCGA-E9-A1N9 TCGA-E9-A1NH TCGA-E9-A1R7 TCGA-E9-A1RI TCGA-E9-A22B 
       36.82        36.20        18.94        48.23        47.64        38.37 
TCGA-E9-A2JS TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1J5 TCGA-EW-A1OY TCGA-EW-A1OZ 
       29.72        26.40        12.20        15.68        29.85        40.41 
TCGA-EW-A1P4 TCGA-EW-A1PC TCGA-EW-A1PF TCGA-EW-A2FR TCGA-EW-A423 TCGA-EW-A6SC 
       29.82         6.15        14.43        55.00        10.16        31.30 
TCGA-GM-A2DI TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3XL TCGA-LD-A7W5 TCGA-LL-A5YM 
       85.15        85.35       110.50        69.30         7.10        15.32 
TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 
       14.47        14.79        16.08        19.53        12.36        19.59 
TCGA-LQ-A4E4 TCGA-OL-A5D6 TCGA-OL-A5S0 TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66O 
       27.91        36.30        20.38        65.62        41.92        17.36 
TCGA-PL-A8LX TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-Z7-A8R5 
        0.16        18.48        21.07       108.07 

$`DEL PEAK 23(11Q13.1) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB 
      131.67        40.14        11.44        48.56        48.36         8.52 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM 
       48.10        14.27        47.24        20.88        31.79         7.96 
TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
       39.32        19.20        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
      121.94        73.84        87.25       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      136.73        92.48        88.60       107.93        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 
        5.19        98.99       107.93        67.33        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       61.58       101.72        89.36        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       74.40        72.00        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       63.29        99.19        54.64        27.12        44.88        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
       17.52        17.13         8.38        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       32.55        25.28        18.21        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV 
       49.48        18.61        19.33        48.46        31.73        23.47 
TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       17.36        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
      107.70        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY 
       39.65        91.07        29.98        32.75        56.28        35.93 
TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.37         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        38.30        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26F 
       37.45        35.67        33.11        23.61        29.56        24.26 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3J0 
       23.74        23.80        21.73        22.32        11.34        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB 
       11.28        13.41        14.70        11.97        14.93        13.74 
TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       21.17        17.92        14.73        12.10        10.72        11.05 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06P TCGA-A8-A06R 
       10.29         9.37        10.42         8.75        13.02        17.98 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07E 
       29.03        31.00        26.01        17.03        53.98        19.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 
       10.98         8.98         7.99        24.99        45.07        15.06 
TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08I 
       36.95         0.99        38.01        28.96        33.01        12.00 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A092 
        9.99        31.00        31.00       112.08        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E 
       41.98         9.99         9.99         1.02        50.04        49.05 
TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W 
       45.07        33.07         1.02        25.02        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       14.01        12.00        13.02         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04         0.95        73.91         5.72         1.48        73.05 
TCGA-AC-A2FB TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI 
       40.57        90.71        60.92        87.12        74.14        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ 
       14.66        32.45         6.48        14.83        22.19        24.13 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI 
       25.05        14.99        16.57        19.79        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62V 
       24.79        29.26        16.80        14.53        19.33        11.44 
TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OQ 
       13.71        17.42         1.68         8.22        20.19         1.12 
TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
        1.32         2.30         0.33         0.23         0.33         0.62 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        1.78         1.71         9.96         7.36         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FW 
        7.00         7.59         7.17         6.90         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.33         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O 
        0.33         0.33         5.33        80.28        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        47.87        58.95        29.13        32.78 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0JA TCGA-AO-A0JB 
       52.18        26.04        37.48        22.36        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM 
       50.86        76.77        65.10        50.24        62.04        71.80 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       99.25       108.72       106.78       108.03        90.58        98.27 
TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       64.04        48.36        41.62        40.57        14.73        82.62 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A0Y5 
       61.87        70.39         0.53        24.79       130.09         5.65 
TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR 
       32.52        32.91        19.20       140.55        98.33         5.26 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ 
       84.10       109.02        98.93        64.83        55.86       107.24 
TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM 
      107.21       125.16       108.36       101.00        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS 
       96.00        86.07        93.90        99.32        17.23        37.81 
TCGA-AR-A1AU TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N 
       94.29        86.43        33.73        50.89       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
      118.59         2.76       104.28        97.84       105.27        77.69 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       32.58        98.76        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL 
       71.05        93.83       166.42        20.25        86.53        66.15 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN 
       63.62        38.17        40.54        57.27        73.35        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA 
       38.96        10.59        77.62       143.38       281.29       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.72       146.50       112.37       233.62 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
      212.25       234.28        78.02       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.48       100.70        89.46       157.41        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       79.63        18.35       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A2IU 
       28.27        68.94        58.88        43.59        73.51       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40C 
       37.87         7.07        85.35        68.12        18.84        71.15 
TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 
       62.93        20.45        25.55        63.09        81.44        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC 
       39.55        39.16        81.63        84.13        51.68        32.02 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       43.53        61.51        21.70        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        53.95        45.57        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       49.05        41.75        90.97        23.44        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        17.26        15.65         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E7 
       67.86        70.88        16.27         4.41        15.68        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0GY TCGA-BH-A0H3 TCGA-BH-A0H5 
       46.19        32.58        24.49        30.35        37.78        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       24.56        41.00        26.50        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HY TCGA-BH-A0RX 
       13.61        36.85        12.89        51.32        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18Q 
        4.90        20.12        90.84        72.56        37.74        55.63 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ET 
       66.05         7.36        51.39        51.16        91.99        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        12.00        49.58        17.69        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       89.16        97.48       120.62       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.89        36.92        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
      144.59        72.07        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 
      130.16        10.65        20.12       109.28        20.88        23.51 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L 
        9.63         5.26        18.87        21.76         9.44        11.93 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y 
       11.77        12.66        11.77        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56         3.16        13.51         1.87        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26X 
        4.11        12.33        12.33        12.95        20.25        12.36 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A8HR TCGA-C8-A9FZ 
        9.67         9.53         0.03         9.50        13.41        19.46 
TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 
       56.81        13.25        20.58        13.97        14.17        21.14 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JF 
       17.49        16.50        55.50        15.78        18.15        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       53.00        14.01        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.38        21.01        12.20        13.32        14.70        18.58 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM 
       17.16        14.73        21.80        14.50        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW 
       55.30        16.41        15.85        16.64        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       16.54         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43        48.03        16.41        13.48         4.80 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 TCGA-D8-A3Z6 
        1.61        10.09        13.08        12.53        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A107 TCGA-E2-A108 
       21.67        16.18        12.66        25.22        34.42        27.52 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P 
       40.41        37.51        28.44        28.87        47.15        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W TCGA-E2-A14X 
       38.24        33.17        75.98        43.33        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       69.34        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       21.04        23.87        14.79        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       17.29        21.63        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1B0 
       20.58        11.05        19.56        14.07        76.57        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1IE TCGA-E2-A1IF 
       87.22        33.01        32.35        28.50        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       70.36        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       60.99        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       28.90        50.07       106.75       102.61         8.75        43.04 
TCGA-E2-A2P5 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A574 TCGA-E9-A1N3 
       26.99        43.56         8.28        30.61        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       32.88        22.29        34.16        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.77        35.24        25.84         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA 
       34.95         2.56         6.12         3.02        11.15        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       46.59        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JT 
       38.99         1.94         7.13        24.56        12.33         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IX TCGA-EW-A1IY 
       26.70         0.79        25.81        27.85        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        28.77        25.94 
TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 
       22.82        29.95        41.13        39.78        52.96        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD 
       18.48        30.08         7.86        18.90        19.99        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       10.52        34.55        19.96        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SB 
       34.03        17.49        23.51        15.22        16.77        24.99 
TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       33.21         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        75.02        70.85        72.10        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 
      106.06       101.62        38.20        43.73        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.47        11.84        11.57 
TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 
       21.24        13.22        13.28        10.62        24.95        32.75 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A6FP TCGA-LL-A6FQ 
       29.23        25.05        17.06        14.70        22.26         2.63 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A9Q3 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.68         7.46        14.50        17.49        22.39         2.10 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       58.52        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66L 
       28.87        24.72        22.32        26.70        23.47        42.77 
TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       26.04        14.07        28.21        19.73        40.11         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
       47.01        64.21        86.96         0.26         9.93        18.81 
TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
       20.68        19.27        13.84        18.87        17.39        17.26 
TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 
       13.94        17.03         3.81        66.84        11.41        52.96 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       29.03        15.35        16.04       107.05 

  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                        282.90                         281.29 
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                        25.185                         28.820 
[1] "0.0 - 282.9 (25.2)" "0.0 - 281.3 (28.8)"
[1] "hr=" "1.1"
D52V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 23(11Q13.1) MUTATED        16       16        1        0        75
  DEL PEAK 23(11Q13.1) WILD-TYPE      73       69        5        6       278
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 23(11Q13.1) MUTATED          62         1         38         12
  DEL PEAK 23(11Q13.1) WILD-TYPE       190         1        116         17
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 23(11Q13.1) MUTATED           12        4         0       2
  DEL PEAK 23(11Q13.1) WILD-TYPE         53       16         1      11
D52V3, multiclass
            clus
vv           DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  STAGE I                              16                             73
  STAGE IA                             16                             69
  STAGE IB                              1                              5
  STAGE II                              0                              6
  STAGE IIA                            75                            278
  STAGE IIB                            62                            190
  STAGE III                             1                              1
  STAGE IIIA                           38                            116
  STAGE IIIB                           12                             17
  STAGE IIIC                           12                             53
  STAGE IV                              4                             16
  STAGE TIS                             0                              1
  STAGE X                               2                             11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 23(11Q13.1) MUTATED    55 136  34  15
  DEL PEAK 23(11Q13.1) WILD-TYPE 221 488 102  25
D52V4, multiclass
    clus
vv   DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  T1                           55                            221
  T2                          136                            488
  T3                           34                            102
  T4                           15                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 23(11Q13.1) MUTATED   106  84  30  14
  DEL PEAK 23(11Q13.1) WILD-TYPE 401 274  89  63
D52V5, multiclass
    clus
vv   DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  N0                          106                            401
  N1                           84                            274
  N2                           30                             89
  N3                           14                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V6, binary
                                cls
clus                               0   1
  DEL PEAK 23(11Q13.1) MUTATED   196   4
  DEL PEAK 23(11Q13.1) WILD-TYPE 693  18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11Q13.1) MUTATED    196    4
  DEL PEAK 23(11Q13.1) WILD-TYPE  693   18
   clus
vv  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  0                          196                            693
  1                            4                             18
[1] 2 2
[1] FALSE
D52V7, binary
                                cls
clus                               0   1
  DEL PEAK 23(11Q13.1) MUTATED   238   3
  DEL PEAK 23(11Q13.1) WILD-TYPE 830   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11Q13.1) MUTATED    238    3
  DEL PEAK 23(11Q13.1) WILD-TYPE  830    9
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  FEMALE                          238                            830
  MALE                              3                              9
[1] 2 2
[1] FALSE
D52V8, binary
                                cls
clus                               0   1
  DEL PEAK 23(11Q13.1) MUTATED   101 115
  DEL PEAK 23(11Q13.1) WILD-TYPE 328 403
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11Q13.1) MUTATED    101  115
  DEL PEAK 23(11Q13.1) WILD-TYPE  328  403
     clus
vv    DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  NO                           101                            328
  YES                          115                            403
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 23(11Q13.1) MUTATED                            0
  DEL PEAK 23(11Q13.1) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 23(11Q13.1) MUTATED                             170
  DEL PEAK 23(11Q13.1) WILD-TYPE                           600
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 23(11Q13.1) MUTATED                               43
  DEL PEAK 23(11Q13.1) WILD-TYPE                            157
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 23(11Q13.1) MUTATED                     2                     3
  DEL PEAK 23(11Q13.1) WILD-TYPE                   4                     6
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 23(11Q13.1) MUTATED                                  9
  DEL PEAK 23(11Q13.1) WILD-TYPE                               20
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 23(11Q13.1) MUTATED                    2             12
  DEL PEAK 23(11Q13.1) WILD-TYPE                 15             35
D52V9, multiclass
                                  clus
vv                                 DEL PEAK 23(11Q13.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             170
  INFILTRATING LOBULAR CARCINOMA                             43
  MEDULLARY CARCINOMA                                         2
  METAPLASTIC CARCINOMA                                       3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                             12
                                  clus
vv                                 DEL PEAK 23(11Q13.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               600
  INFILTRATING LOBULAR CARCINOMA                              157
  MEDULLARY CARCINOMA                                           4
  METAPLASTIC CARCINOMA                                         6
  MIXED HISTOLOGY (PLEASE SPECIFY)                             20
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 23(11Q13.1) MUTATED                                  0    21
  DEL PEAK 23(11Q13.1) WILD-TYPE                                1    39
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 23(11Q13.1) MUTATED                          50   143
  DEL PEAK 23(11Q13.1) WILD-TYPE                       131   602
D52V11, multiclass
                                  clus
vv                                 DEL PEAK 23(11Q13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      21
  BLACK OR AFRICAN AMERICAN                                  50
  WHITE                                                     143
                                  clus
vv                                 DEL PEAK 23(11Q13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        39
  BLACK OR AFRICAN AMERICAN                                   131
  WHITE                                                       602
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V12, binary
                                cls
clus                               0   1
  DEL PEAK 23(11Q13.1) MUTATED     9 188
  DEL PEAK 23(11Q13.1) WILD-TYPE  30 687
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11Q13.1) MUTATED      9  188
  DEL PEAK 23(11Q13.1) WILD-TYPE   30  687
                        clus
vv                       DEL PEAK 23(11Q13.1) MUTATED
  HISPANIC OR LATINO                                9
  NOT HISPANIC OR LATINO                          188
                        clus
vv                       DEL PEAK 23(11Q13.1) WILD-TYPE
  HISPANIC OR LATINO                                 30
  NOT HISPANIC OR LATINO                            687
[1] 2 2
[1] FALSE

Clustering(53) Variable = DEL PEAK 24(11Q23.3) MUTATION ANALYSIS
D53V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 24(11Q23.3) MUTATED   470  69
  DEL PEAK 24(11Q23.3) WILD-TYPE 447  78
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                           539                            525 
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                            69                             78 
$`DEL PEAK 24(11Q23.3) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SD 
      129.14        42.81        40.14        11.44         9.96        14.37 
TCGA-A1-A0SE TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO 
       43.43        47.24        13.68         7.96        39.32        28.01 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V 
       19.20        18.21        18.02       121.94        73.84        63.12 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CR 
       55.43       136.73        99.12        24.79       114.81       107.93 
TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ER 
       75.25       107.93        56.81        25.22        79.76        74.40 
TCGA-A2-A0ET TCGA-A2-A0EW TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       35.05        61.94        54.64        50.43        44.28        17.13 
TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YE TCGA-A2-A0YF 
       49.84        20.52        20.75        32.55        18.21        50.47 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       49.48        19.33        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1G4 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A3KC 
       60.72        19.56        42.44        17.19       105.34        36.23 
TCGA-A2-A3KD TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S1 
       39.65        56.28        47.31        50.83         7.30        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0DC TCGA-A7-A13D 
       21.14        21.90        35.31        30.61        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26J TCGA-A7-A2KD 
       20.19        25.15        29.56        31.36        20.61        22.32 
TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       10.59        11.28        14.93        13.74        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       17.92        14.73        12.10        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z 
        8.75        13.02        53.06        29.03        31.00         1.02 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07P 
        9.01        43.00        19.99        14.01        32.05        10.98 
TCGA-A8-A07W TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08F TCGA-A8-A08G 
        9.99        36.95        13.02         0.99        33.01        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S 
       12.00        37.05         9.99        31.00        31.00        33.01 
TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B 
       43.00        33.01        17.95        12.00         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
        1.02        50.04        49.05        45.07        29.98        33.07 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
        8.98        19.04         0.99        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A2B8 
       21.04        27.02        17.03         0.95        22.95         1.48 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FG TCGA-AC-A2FM 
       73.05        99.35        40.57        86.66        60.92        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QQ 
       74.14        33.04        19.33        16.31        14.83        24.13 
TCGA-AC-A3W5 TCGA-AC-A4ZE TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A6IV TCGA-AC-A6IW 
       16.57        29.26        14.96        11.44        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AN-A03X TCGA-AN-A03Y 
       12.26         8.22         0.03        20.19         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.23         0.62         2.96         1.78         9.96         7.36 
TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        0.33         7.96         6.90         7.04         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33         0.33         5.36         0.33         0.33         0.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03T 
        5.59        80.28        61.35        81.63        95.70        47.87 
TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       29.13        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       53.03        21.53        72.00        76.77        65.10        26.24 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12E 
       55.33        71.80       115.27       108.72       108.03        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H 
       48.36        41.62        61.87         0.53        17.79        24.79 
TCGA-AQ-A04J TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TT 
       26.93         5.65        15.62         2.56        32.91       109.02 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       75.22        98.93       107.24        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AM TCGA-AR-A1AP 
      134.14       107.21       108.36       103.86        98.33        93.90 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24Q 
       94.29        61.28        86.53       160.90        94.22       104.28 
TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 
      112.77       105.27       105.30        98.66        89.00        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
       71.05        93.83        86.53        54.21        66.15        63.62 
TCGA-AR-A2LO TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IG TCGA-B6-A0IJ TCGA-B6-A0IK 
       39.39        12.13       129.57       146.50       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0RU 
      127.33        68.45        81.17       162.05       100.70       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      157.41        97.48       188.68        79.63        18.35        21.47 
TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A400 
      113.79       245.10        58.88       101.52       139.17         7.07 
TCGA-B6-A402 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AZ TCGA-BH-A0B5 
       70.16       103.63        62.93        59.84        63.09        70.22 
TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BL 
       81.63        37.22        32.02        18.21        61.51        74.89 
TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       75.48        76.60        49.94        49.05        41.75        44.02 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        45.83        77.98        23.44        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DQ TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 
       29.98        13.91         3.22        16.27         4.41        14.30 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HA 
       31.00        24.43        10.78        15.16        23.08        52.96 
TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
       26.50         5.85        13.61        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18L 
       50.79        23.93        23.05        35.93        20.12        26.66 
TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       72.56        30.28        37.55        51.16        67.50        91.99 
TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F2 TCGA-BH-A1F8 
      113.82        42.28        55.69        17.69        31.53        24.62 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FN TCGA-BH-A201 TCGA-BH-A204 
      114.15        33.17        74.73        72.07        28.14        83.31 
TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A8FY TCGA-BH-A8FZ 
        6.44        10.52        18.64        23.51         9.70        18.87 
TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Y 
        9.44        11.77        12.66        12.66        12.66        48.53 
TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
        1.87        12.92         4.11         4.08        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HO 
       11.34        11.28         0.16        12.03        10.42        12.33 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A27A TCGA-C8-A27B 
       12.53        12.36        12.95         8.28        24.56        14.43 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z 
       12.95        13.02        12.49        19.46        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       13.25        14.17        13.48        14.17        17.49        16.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JM 
       15.78        18.15        18.90        18.97        20.12        19.40 
TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XF 
       21.01        18.58        17.79        25.74        23.90        15.22 
TCGA-D8-A1XK TCGA-D8-A1XO TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1Y0 TCGA-D8-A1Y2 
       14.50        55.30        16.31        12.99        15.52        14.24 
TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27V 
       13.45        14.43        13.48         4.80        10.09        12.53 
TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10E 
       12.26        43.00        34.42        46.59        40.41        28.44 
TCGA-E2-A14O TCGA-E2-A14S TCGA-E2-A14V TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A155 
       44.68        33.17        34.26        63.62        69.96        21.04 
TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15K 
       14.79        23.34        20.71        21.63        18.21         9.04 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       11.05        50.79        19.56        56.94        14.07        51.39 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IU TCGA-E2-A1L7 
       37.25        77.65        70.36        33.73        11.08        60.36 
TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A56Z 
       73.64        24.59        43.04        26.99        34.55         8.28 
TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       34.92        34.29        17.69        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       36.56        39.55        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R7 TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       24.82        34.95        48.23        46.65         6.58        21.27 
TCGA-E9-A1RI TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       47.64        37.74        38.37        41.03        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A3QA 
       40.50        20.12        38.99        12.33        38.07        30.18 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1J1 
        0.79        25.81        26.40        27.85        12.20        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX 
       13.25        16.57        15.68        28.77        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1PA TCGA-EW-A1PC 
       29.85        40.41        29.82        23.11        18.90         6.15 
TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A423 
       13.94        14.43        55.00        52.73        22.09        10.16 
TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GM-A2D9 TCGA-GM-A2DD 
       23.51        16.77        31.30        33.21        59.57        75.02 
TCGA-GM-A2DL TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3XL TCGA-LD-A66U TCGA-LD-A7W6 
      115.69        85.35       110.50        69.30        21.24        13.28 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP 
       17.06        15.32        14.70        14.47        14.79        22.26 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Z TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 
        2.63        16.08         7.46        19.53        12.36        19.59 
TCGA-LQ-A4E4 TCGA-OK-A5Q2 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5RY 
       27.91         2.10        31.99        58.62        36.36        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66N TCGA-OL-A66O 
       22.32        20.38        65.62        41.92        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VO TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PL-A8LX TCGA-S3-A6ZF 
       14.07        28.21        47.01        64.21         0.16        18.81 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA12 TCGA-S3-AA17 TCGA-UL-AAZ6 
       18.48        21.07        20.68        18.87        13.94        17.03 
TCGA-WT-AB41 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       52.96        15.35        16.04       108.07       107.05 

$`DEL PEAK 24(11Q23.3) WILD-TYPE`
TCGA-3C-AALI TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SF TCGA-A1-A0SG 
      131.67        48.56        48.36         8.52        48.10        14.27 
TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04U TCGA-A2-A04W 
       20.88        31.79       143.15        78.41        87.25       101.98 
TCGA-A2-A04Y TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV 
       36.13        92.48        88.60        77.19         5.19        98.99 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN 
       67.33        34.55        33.76        61.58       101.72        89.36 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EX 
       80.28       118.45        72.00        34.29        31.82        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T0 TCGA-A2-A0T2 
       63.29        99.19        27.12        44.88        17.52         8.38 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ 
       17.46        18.90        25.28        21.90        21.67        18.61 
TCGA-A2-A0YL TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       48.46        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
      107.70        18.15        10.59        33.93        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       32.75        35.93        50.37        24.39        21.30        23.21 
TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       38.30        34.29        35.47        37.45        35.67        33.11 
TCGA-A7-A13G TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A3IY 
       23.61        24.26        23.74        23.80        21.73        11.34 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A5ZW TCGA-A7-A5ZX 
       10.29        13.41        14.70        11.97        10.72        11.05 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 
       13.02         1.02        17.98        26.01        17.03        53.98 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S 
       18.97        18.97        12.00         9.99         8.98         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08R 
       24.99        45.07        15.06        38.01        28.96         0.99 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09N 
      112.08        40.01        30.97        41.98         9.99         1.02 
TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23G 
       25.02        15.02        14.01         0.99        38.04        73.91 
TCGA-AC-A23H TCGA-AC-A2FF TCGA-AC-A2FK TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
        5.72        90.71        87.12        14.66        32.45         6.48 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI 
       22.19        25.05        14.99        19.79        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y 
       24.79        16.80        14.53        19.33        13.71        17.42 
TCGA-AC-A6NO TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A04D 
        1.68         1.12         1.32         2.30         0.33         1.71 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF 
        7.46         0.16         0.33         0.33         6.44         5.65 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FY TCGA-AN-A0XO TCGA-AN-A0XP 
        7.00         7.59         7.17         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03N TCGA-AO-A03R TCGA-AO-A03U 
        0.33         0.33         5.33        66.77        68.75        58.95 
TCGA-AO-A0J2 TCGA-AO-A0J8 TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JI TCGA-AO-A0JJ 
       32.78        22.36        50.70        50.86        50.24        62.04 
TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12H 
       99.25       106.78        90.58        98.27        64.04        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AQ-A04L TCGA-AQ-A1H3 TCGA-AQ-A7U7 
       14.73        82.62        70.39       130.09        32.52        19.20 
TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TX TCGA-AR-A0TY 
      140.55        98.33         5.26        84.10        64.83        55.86 
TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ 
      125.16       101.00        97.68        96.00        86.07        99.32 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24M 
       17.23        37.81        86.43        33.73        50.89       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24W 
       99.78       118.59         2.76        97.84        77.69        32.58 
TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LN 
       98.76        99.62        93.30       166.42        20.25        38.17 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       40.54        57.27        73.35        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE 
       77.62       143.38       281.29       275.87        50.70        65.72 
TCGA-B6-A0IH TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      112.37        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28        78.02       263.28       102.77       140.48 
TCGA-B6-A0RT TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KC 
       89.46       206.86       129.70        28.27        68.94        43.59 
TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A409 
       73.51       170.17        37.87        85.35        68.12        18.84 
TCGA-B6-A40C TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 
       71.15        20.45        25.55        81.44        40.83        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM 
       39.16        84.13        51.68        43.53        21.70        61.68 
TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0DL 
       72.23        74.14        53.95        45.57        77.95        78.28 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       17.26        15.65         2.56        38.47        67.86        70.88 
TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       15.68         9.63        44.81        46.19        32.58        24.49 
TCGA-BH-A0GY TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HI 
       30.35        37.78        53.26        24.56        41.00        20.38 
TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
        2.50        36.85         5.59        24.95        42.35        44.81 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18K TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18S 
       32.91         4.90        90.84        37.74        55.63        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1ET TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1F0 
        7.36        51.39        82.85        12.00        49.58        25.81 
TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
       89.16        97.48       120.62       122.89        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A203 
       55.00        45.63       144.59        72.07        26.14        38.60 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V 
       57.83       130.16        10.65        20.12       109.28        20.88 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8G0 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12O 
        9.63         5.26        21.76        11.93        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       11.77        12.66        12.66        12.56         3.16        13.51 
TCGA-C8-A134 TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A273 TCGA-C8-A274 
       12.59        12.33        12.95        20.25         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A8HR TCGA-D8-A141 TCGA-D8-A142 
        0.03         9.50        33.99        13.41        20.58        13.97 
TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       21.14        19.20        55.50        12.03        53.00        14.01 
TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        20.09        20.38        12.20        13.32        14.70 
TCGA-D8-A1X7 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG 
       16.73        27.58        18.15        12.39        17.16        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT 
       21.80        19.92        17.69        16.41        15.85        16.64 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y3 
       15.16        43.04        16.54        15.32         9.93        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P 
       17.42        16.04        13.05        48.03        16.41         1.61 
TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       13.08        33.37        18.51        21.67        16.18        12.66 
TCGA-D8-A73X TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10F TCGA-E2-A14N 
       25.22        27.52        37.51        40.11        28.87        47.15 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W 
       40.96        38.24        38.60        75.98        43.33        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 
       31.96        69.34        18.51        23.24        19.43        23.87 
TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       25.05        22.82        17.29        12.92        55.63        53.92 
TCGA-E2-A15L TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       20.58        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IF TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       28.50        16.47        37.41        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LB 
        3.88        22.19        60.99        54.18        19.66        75.81 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A3DX 
       28.90        50.07       106.75       102.61         8.75        43.56 
TCGA-E2-A570 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1ND 
       30.61        38.76        34.82        32.88        22.29        41.62 
TCGA-E9-A1NE TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       35.77        28.27         2.56         6.12         3.02        11.15 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RH TCGA-E9-A226 
       45.01        32.09        40.24         1.12        46.59        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A22A TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 
       32.05        42.25        39.09         0.69         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X 
       24.56        29.72         9.47        32.91        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1OW 
       23.84        26.70        39.72         8.48        18.21        22.82 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       41.13        39.78        52.96        18.48        30.08         7.86 
TCGA-EW-A1PB TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A3E8 
       19.99        10.52        34.55        19.96        25.91        34.03 
TCGA-EW-A3U0 TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA 
       17.49        15.22        24.99         7.40       109.87       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       79.10        83.34        70.85        72.10        85.15        86.96 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 
      106.06       101.62        38.20        43.73        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.47        11.84        11.57 
TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
       13.22         7.10        10.62        24.95        32.75        29.23 
TCGA-LL-A50Y TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A9Q3 TCGA-MS-A51U TCGA-OL-A5D6 
       25.05        15.68        14.50        17.49        22.39        36.30 
TCGA-OL-A5D7 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A66H TCGA-OL-A66I 
       58.52        40.08        34.92        28.87        26.70        23.47 
TCGA-OL-A66L TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DE TCGA-PL-A8LY 
       42.77        19.73        40.11         8.91        86.96         0.26 
TCGA-PL-A8LZ TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UU-A93S 
        9.93        19.27        13.84        17.39        17.26         3.81 
TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB44 
       66.84        11.41        29.03 

  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                        282.90                         281.29 
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                         26.04                          29.98 
[1] "0.0 - 282.9 (26.0)" "0.0 - 281.3 (30.0)"
[1] "hr=" "1"  
D53V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 24(11Q23.3) MUTATED        37       37        2        3       169
  DEL PEAK 24(11Q23.3) WILD-TYPE      52       48        4        3       184
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 24(11Q23.3) MUTATED         145         1         88         16
  DEL PEAK 24(11Q23.3) WILD-TYPE       107         1         66         13
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 24(11Q23.3) MUTATED           28       11         0       8
  DEL PEAK 24(11Q23.3) WILD-TYPE         37        9         1       5
D53V3, multiclass
            clus
vv           DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  STAGE I                              37                             52
  STAGE IA                             37                             48
  STAGE IB                              2                              4
  STAGE II                              3                              3
  STAGE IIA                           169                            184
  STAGE IIB                           145                            107
  STAGE III                             1                              1
  STAGE IIIA                           88                             66
  STAGE IIIB                           16                             13
  STAGE IIIC                           28                             37
  STAGE IV                             11                              9
  STAGE TIS                             0                              1
  STAGE X                               8                              5
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 24(11Q23.3) MUTATED   120 327  77  22
  DEL PEAK 24(11Q23.3) WILD-TYPE 156 297  59  18
D53V4, multiclass
    clus
vv   DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  T1                          120                            156
  T2                          327                            297
  T3                           77                             59
  T4                           22                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 24(11Q23.3) MUTATED   241 192  67  34
  DEL PEAK 24(11Q23.3) WILD-TYPE 266 166  52  43
D53V5, multiclass
    clus
vv   DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  N0                          241                            266
  N1                          192                            166
  N2                           67                             52
  N3                           34                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V6, binary
                                cls
clus                               0   1
  DEL PEAK 24(11Q23.3) MUTATED   438  13
  DEL PEAK 24(11Q23.3) WILD-TYPE 451   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q23.3) MUTATED    438   13
  DEL PEAK 24(11Q23.3) WILD-TYPE  451    9
   clus
vv  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  0                          438                            451
  1                           13                              9
[1] 2 2
[1] FALSE
D53V7, binary
                                cls
clus                               0   1
  DEL PEAK 24(11Q23.3) MUTATED   537  10
  DEL PEAK 24(11Q23.3) WILD-TYPE 531   2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q23.3) MUTATED    537   10
  DEL PEAK 24(11Q23.3) WILD-TYPE  531    2
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  FEMALE                          537                            531
  MALE                             10                              2
[1] 2 2
[1] FALSE
D53V8, binary
                                cls
clus                               0   1
  DEL PEAK 24(11Q23.3) MUTATED   220 261
  DEL PEAK 24(11Q23.3) WILD-TYPE 209 257
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q23.3) MUTATED    220  261
  DEL PEAK 24(11Q23.3) WILD-TYPE  209  257
     clus
vv    DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  NO                           220                            209
  YES                          261                            257
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 24(11Q23.3) MUTATED                            1
  DEL PEAK 24(11Q23.3) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 24(11Q23.3) MUTATED                             396
  DEL PEAK 24(11Q23.3) WILD-TYPE                           374
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 24(11Q23.3) MUTATED                              102
  DEL PEAK 24(11Q23.3) WILD-TYPE                             98
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 24(11Q23.3) MUTATED                     5                     5
  DEL PEAK 24(11Q23.3) WILD-TYPE                   1                     4
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 24(11Q23.3) MUTATED                                 16
  DEL PEAK 24(11Q23.3) WILD-TYPE                               13
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 24(11Q23.3) MUTATED                    5             16
  DEL PEAK 24(11Q23.3) WILD-TYPE                 12             31
D53V9, multiclass
                                  clus
vv                                 DEL PEAK 24(11Q23.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             396
  INFILTRATING LOBULAR CARCINOMA                            102
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       5
  MIXED HISTOLOGY (PLEASE SPECIFY)                           16
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             16
                                  clus
vv                                 DEL PEAK 24(11Q23.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               374
  INFILTRATING LOBULAR CARCINOMA                               98
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         4
  MIXED HISTOLOGY (PLEASE SPECIFY)                             13
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 24(11Q23.3) MUTATED                                  1    33
  DEL PEAK 24(11Q23.3) WILD-TYPE                                0    27
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 24(11Q23.3) MUTATED                         106   353
  DEL PEAK 24(11Q23.3) WILD-TYPE                        75   392
D53V11, multiclass
                                  clus
vv                                 DEL PEAK 24(11Q23.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      33
  BLACK OR AFRICAN AMERICAN                                 106
  WHITE                                                     353
                                  clus
vv                                 DEL PEAK 24(11Q23.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        27
  BLACK OR AFRICAN AMERICAN                                    75
  WHITE                                                       392
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V12, binary
                                cls
clus                               0   1
  DEL PEAK 24(11Q23.3) MUTATED    20 435
  DEL PEAK 24(11Q23.3) WILD-TYPE  19 440
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q23.3) MUTATED     20  435
  DEL PEAK 24(11Q23.3) WILD-TYPE   19  440
                        clus
vv                       DEL PEAK 24(11Q23.3) MUTATED
  HISPANIC OR LATINO                               20
  NOT HISPANIC OR LATINO                          435
                        clus
vv                       DEL PEAK 24(11Q23.3) WILD-TYPE
  HISPANIC OR LATINO                                 19
  NOT HISPANIC OR LATINO                            440
[1] 2 2
[1] FALSE

Clustering(54) Variable = DEL PEAK 25(11Q25) MUTATION ANALYSIS
D54V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 25(11Q25) MUTATED   443  63
  DEL PEAK 25(11Q25) WILD-TYPE 474  84
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                         506                          558 
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                          63                           84 
$`DEL PEAK 25(11Q25) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SD 
      129.14       131.67        40.14        11.44         9.96        14.37 
TCGA-A1-A0SE TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO 
       43.43        47.24        13.68         7.96        39.32        28.01 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
       19.20        18.21        18.02       121.94        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
       63.12        55.43       136.73        99.12        24.79       114.81 
TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ER 
       75.25       107.93        56.81        25.22        79.76        74.40 
TCGA-A2-A0ET TCGA-A2-A0EW TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 
       35.05        61.94        54.64        50.43        44.28        17.13 
TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YE TCGA-A2-A0YF 
       49.84        20.52        20.75        32.55        18.21        50.47 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       49.48        19.33        31.73        23.47        17.36        60.72 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       42.44        17.19       105.34        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S2 
       91.07        56.28        47.31        50.83         7.30        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       21.90        35.31        35.67        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD 
       25.15        29.56        31.36        21.73        20.61        22.32 
TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       10.59        11.28        14.93        13.74        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       17.92        14.73        12.10        10.29         9.37        10.42 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
        8.75        13.02         1.02        53.06        29.03        31.00 
TCGA-A8-A075 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07P 
       17.03        43.00        19.99        14.01        32.05        10.98 
TCGA-A8-A07W TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I 
        9.99        13.02         0.99        33.01        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S 
       37.05         9.99        31.00        31.00         0.99        33.01 
TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09B 
       43.00        33.01        17.95        12.00         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
        1.02        50.04        49.05        45.07        29.98        33.07 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        8.98        19.04        12.00        19.04        13.02        21.04 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A2B8 TCGA-AC-A2BK 
       27.02        17.03         0.95        22.95         1.48        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FG TCGA-AC-A2FM TCGA-AC-A2FO 
       99.35        40.57        86.66        60.92        26.04        74.14 
TCGA-AC-A2QH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QQ TCGA-AC-A3W5 TCGA-AC-A4ZE 
       33.04        16.31        14.83        24.13        16.57        29.26 
TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A7VC 
       14.96        11.44        18.67        13.58        12.26         0.03 
TCGA-AC-A8OQ TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A 
        1.12         0.33         0.33         0.23         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FS 
        1.78         9.96         7.36         0.33         7.96         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN 
        7.04         0.33         0.36         0.33         5.36         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O 
        0.33         0.33         5.59        80.28        61.35        81.63 
TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       95.70        47.87        29.13        32.78        21.40        52.18 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JD TCGA-AO-A0JE 
       37.48        20.32        53.03        21.53        72.00        76.77 
TCGA-AO-A0JG TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12E 
       26.24        55.33        71.80       115.27       108.03        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H 
       48.36        41.62        61.87         0.53        17.79        24.79 
TCGA-AQ-A04J TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TT TCGA-AR-A0TV 
       26.93        15.62         2.56        32.91       109.02        75.22 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 
      107.24        65.36       133.22        83.87       134.14       107.21 
TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AM TCGA-AR-A1AP TCGA-AR-A1AU TCGA-AR-A1AV 
      108.36       103.86        98.33        93.90        94.29        61.28 
TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24V 
      160.90        94.22       104.28       112.77       105.27       105.30 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LJ TCGA-AR-A2LK 
       89.00        99.62        71.05        93.83        86.53        54.21 
TCGA-AR-A2LL TCGA-AR-A2LO TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IG TCGA-B6-A0IJ 
       66.15        39.39        12.13       129.57       146.50       233.62 
TCGA-B6-A0IK TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
       18.77        68.45        81.17       282.90       157.41        97.48 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X7 TCGA-B6-A1KF 
       79.63        18.35        21.47       113.79        58.88       101.52 
TCGA-B6-A1KN TCGA-B6-A400 TCGA-B6-A402 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AV 
      139.17         7.07        70.16       103.63        62.93        59.84 
TCGA-BH-A0AZ TCGA-BH-A0B5 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       63.09        70.22        51.68        37.22        32.02        18.21 
TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BV TCGA-BH-A0BZ 
       61.51        74.89        75.48        76.60        49.94        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        44.02        89.06        90.97        45.83        77.98 
TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DQ TCGA-BH-A0DZ TCGA-BH-A0E0 
       23.44        29.98        13.91         3.22        16.27         4.41 
TCGA-BH-A0E2 TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HA 
       14.30        31.00        24.43        15.16        23.08        52.96 
TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
       26.50         5.85        13.61        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18L 
       50.79        23.93        23.05        35.93        20.12        26.66 
TCGA-BH-A18M TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18V TCGA-BH-A1EN 
       72.56        30.28        55.63        37.55        51.16        67.50 
TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1F2 TCGA-BH-A1F8 TCGA-BH-A1FC 
      113.82        42.28        55.69        31.53        24.62       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FN TCGA-BH-A201 TCGA-BH-A204 TCGA-BH-A28Q 
       33.17        74.73        72.07        28.14        83.31         6.44 
TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A8FY TCGA-BH-AB28 TCGA-C8-A12M 
       10.52        18.64        23.51         9.70         9.44        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12W TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A132 
       12.66        12.66        12.66        48.53         3.16         1.87 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG 
       12.59        12.92         4.11         4.08        10.92        11.34 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HO TCGA-C8-A26W TCGA-C8-A26X 
        0.16        12.03        10.42        12.33        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HP 
       12.95         8.28        24.56        14.43        12.95        13.02 
TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A145 
       12.49        19.46        56.81        20.88        13.25        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       19.20        14.17        17.49        15.78        18.15        18.90 
TCGA-D8-A1JI TCGA-D8-A1JM TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1X9 
       18.97        19.40        18.58        17.79        25.74        23.90 
TCGA-D8-A1XF TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A27F 
       15.22        16.31        12.99        15.52        14.24        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27V 
       13.45        13.05        14.43         4.80        10.09        12.53 
TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10E 
       12.26        43.00        34.42        46.59        40.41        28.44 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Y TCGA-E2-A150 
       47.15        44.68        34.26        32.02        69.34        63.62 
TCGA-E2-A155 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15K 
       21.04        14.79        23.34        20.71        18.21         9.04 
TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B5 
       11.05        19.56        56.94        14.07        51.39        32.35 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IH TCGA-E2-A1IU TCGA-E2-A1L7 TCGA-E2-A1L8 
       37.25        77.65        33.73        11.08        60.36        73.64 
TCGA-E2-A1LA TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A56Z TCGA-E2-A576 
       24.59        43.04        26.99        34.55         8.28        34.29 
TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       17.69        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 
       35.24        25.84        18.94         9.86        24.82        34.95 
TCGA-E9-A1R7 TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       48.23         6.58        47.64        38.37        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A295 TCGA-E9-A3HO 
       40.73        40.50        20.12        38.99        12.33        38.07 
TCGA-E9-A3QA TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW 
       30.18         0.79        25.81        26.40        27.85        12.20 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.90        13.25        16.57        15.68        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1PA TCGA-EW-A1PB 
       29.85        40.41        29.82        23.11        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A3U0 
        6.15        13.94        14.43        55.00        52.73        17.49 
TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GM-A2D9 
       10.16        23.51        16.77        31.30        33.21        59.57 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DL TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3XL 
       75.02        70.85       115.69        85.35       110.50        69.30 
TCGA-LD-A7W6 TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-LL-A6FR 
       13.28        15.32        14.70        14.47         2.63        16.08 
TCGA-LL-A73Z TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LQ-A4E4 TCGA-OK-A5Q2 
        7.46        19.53        12.36        19.59        27.91         2.10 
TCGA-OL-A5D7 TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       58.52        58.62        36.36        24.72        22.32        20.38 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-PE-A5DC 
       65.62        41.92        17.36        14.07        28.21        47.01 
TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 
        0.16        18.81        18.48        21.07        20.68        19.27 
TCGA-S3-AA12 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-WT-AB41 TCGA-XX-A899 TCGA-XX-A89A 
       18.87        13.94        17.03        52.96        15.35        16.04 
TCGA-Z7-A8R5 TCGA-Z7-A8R6 
      108.07       107.05 

$`DEL PEAK 25(11Q25) WILD-TYPE`
TCGA-3C-AALJ TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SF TCGA-A1-A0SG 
       42.81        48.56        48.36         8.52        48.10        14.27 
TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04W TCGA-A2-A04Y 
       20.88        31.79       143.15        78.41       101.98        36.13 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV 
       92.48        88.60       107.93        77.19         5.19        98.99 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN 
       67.33        34.55        33.76        61.58       101.72        89.36 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EX 
       80.28       118.45        72.00        34.29        31.82        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T0 TCGA-A2-A0T2 
       63.29        99.19        27.12        44.88        17.52         8.38 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ 
       17.46        18.90        25.28        21.90        21.67        18.61 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 
       48.46        23.77        22.45        20.25        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3XU 
       16.47        52.47       107.70        18.15        10.59        29.98 
TCGA-A2-A3XV TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       32.75        35.93        50.37        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       26.96        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DB TCGA-A7-A13G TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A3IY 
       33.11        23.61        24.26        23.74        23.80        11.34 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A5ZW TCGA-A7-A5ZX 
       10.29        13.41        14.70        11.97        10.72        11.05 
TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 
       13.02        17.98        26.01         1.02        53.98         9.01 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S 
       18.97        18.97        12.00         9.99         8.98         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A08B TCGA-A8-A08C 
       24.99        45.07        15.06        36.95        38.01        28.96 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09N 
      112.08        40.01        30.97        41.98         9.99         1.02 
TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A7 TCGA-A8-A0AD 
       25.02        15.02         0.99        14.01         0.99        38.04 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2FF TCGA-AC-A2FK TCGA-AC-A2QI TCGA-AC-A2QJ 
       73.91         5.72        90.71        87.12        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 
       32.45         6.48        22.19        25.05        14.99        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS 
       15.48        23.24        24.79        16.80        14.53        19.33 
TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OR 
       13.71        17.42         1.68         8.22        20.19         1.32 
TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        2.30         0.33         1.71         7.46         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         6.44         5.65         7.00         7.59         7.17 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XU 
        0.33         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XV TCGA-AO-A03N TCGA-AO-A03R TCGA-AO-A03U TCGA-AO-A0J5 TCGA-AO-A0J8 
        5.33        66.77        68.75        58.95        26.04        22.36 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A125 
       50.70        50.86        65.10        50.24        62.04        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12H 
      108.72       106.78        90.58        98.27        64.04        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H3 
       14.73        82.62        70.39       130.09         5.65        32.52 
TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TW 
       19.20       140.55        98.33         5.26        84.10        98.93 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AN 
       64.83        55.86       125.16       101.00        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AW TCGA-AR-A1AX 
       86.07        99.32        17.23        37.81        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       33.73        50.89       120.33        99.78       118.59         2.76 
TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A252 
       97.84        77.69        32.58        98.76        98.66        93.30 
TCGA-AR-A254 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LQ 
       85.64       166.42        20.25        63.62        38.17        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       57.27        73.35        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IH 
      143.38       281.29       275.87        50.70        65.72       112.37 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      127.33        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
      212.25       234.28        78.02       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0WT TCGA-B6-A0WZ TCGA-B6-A0X0 
      140.48       100.70        89.46       188.68       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A2IU 
      245.10        28.27        68.94        43.59        73.51       170.17 
TCGA-B6-A3ZX TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40C TCGA-BH-A0AW 
       37.87        85.35        68.12        18.84        71.15        20.45 
TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B6 
       25.55        81.44        40.83        39.55        39.16        81.63 
TCGA-BH-A0B7 TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ 
       84.13        43.53        21.70        61.68        72.23        74.14 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0DH TCGA-BH-A0DL TCGA-BH-A0DO 
       53.95        45.57        77.95        38.01        78.28        17.26 
TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E1 
       15.65         2.56        38.47        67.86        70.88        15.68 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0GY 
        9.63        44.81        46.19        32.58        24.49        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HI 
       10.78        37.78        53.26        24.56        41.00        20.38 
TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
        2.50        36.85         5.59        24.95        42.35        44.81 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18K TCGA-BH-A18N TCGA-BH-A18S TCGA-BH-A18T 
       32.91         4.90        90.84        37.74        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1EY 
       51.39        91.99        82.85        12.00        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FG TCGA-BH-A1FH 
       25.81        89.16        97.48       120.62       122.89        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 
       63.35        55.00        45.63       144.59        72.07        26.14 
TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42U 
       38.60        57.83       130.16        10.65        20.12       109.28 
TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-C8-A12L 
       20.88         9.63         5.26        18.87        21.76        11.93 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Z 
       11.77        12.66        11.77        12.66        12.66        12.56 
TCGA-C8-A131 TCGA-C8-A1HE TCGA-C8-A1HI TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V 
       13.51        12.33        11.28        12.33        12.95        20.25 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A8HR 
        9.67         9.53         0.03         9.50        33.99        13.41 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A1JA TCGA-D8-A1JB 
       20.58        13.97        14.17        21.14        16.50        55.50 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       12.03        53.00        14.01        20.09        20.12        20.09 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X7 
       20.38        21.01        12.20        13.32        14.70        16.73 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        17.16        14.73        21.80 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.50        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y1 
       16.64        15.16        43.04        16.54        15.32         9.93 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P 
       14.14        17.42        48.03        16.41        13.48         1.61 
TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       13.08        33.37        18.51        21.67        16.18        12.66 
TCGA-D8-A73X TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10F TCGA-E2-A14P 
       25.22        27.52        37.51        40.11        28.87        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14X 
       38.24        38.60        33.17        75.98        43.33        31.96 
TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A159 
       18.51        69.96        23.24        19.43        23.87        25.05 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       22.82        17.29        21.63        12.92        55.63        53.92 
TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       20.58        50.79        76.57        53.62        87.22        33.01 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ 
       28.50        16.47        37.41        70.36        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L6 TCGA-E2-A1L9 
       59.18         3.88        22.19        60.99        54.18        19.66 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       75.81        28.90        50.07       106.75       102.61         8.75 
TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 
       43.56        30.61        34.92        38.76        34.82        32.88 
TCGA-E9-A1N6 TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1R4 
       22.29        41.62        35.77        28.27         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
        3.02        11.15        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       46.65        21.27        46.59        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       37.74        39.09         0.69         1.94         7.13        24.56 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       29.72         9.47        32.91        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J6 TCGA-EW-A1OW 
       26.70        39.72         8.48        18.21        28.77        22.82 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       41.13        39.78        52.96        18.48        30.08         7.86 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       10.52        34.55        19.96        25.91        22.09        34.03 
TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB 
       15.22        24.99         7.40       109.87       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN 
       83.34        72.10        85.15        86.96       106.06       101.62 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U 
        2.60        62.47        11.84        11.57        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
        7.10        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A9Q3 
       17.06        14.79        22.26        15.68        14.50        17.49 
TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       22.39        36.30        31.99        40.08        34.92        28.87 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A6VQ TCGA-OL-A6VR 
       26.70        23.47        42.77        26.04        19.73        40.11 
TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-AA11 
        8.91        64.21        86.96         0.26         9.93        13.84 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB44 
       17.39        17.26         3.81        66.84        11.41        29.03 

  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                        0.03                         0.03 
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                      282.90                       281.29 
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                       25.99                        29.13 
[1] "0.0 - 282.9 (26.0)" "0.0 - 281.3 (29.1)"
[1] "hr=" "1"  
D54V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 25(11Q25) MUTATED        31       33        2        2       162
  DEL PEAK 25(11Q25) WILD-TYPE      58       52        4        4       191
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 25(11Q25) MUTATED         137         1         86         12
  DEL PEAK 25(11Q25) WILD-TYPE       115         1         68         17
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 25(11Q25) MUTATED           27       10         0       8
  DEL PEAK 25(11Q25) WILD-TYPE         38       10         1       5
D54V3, multiclass
            clus
vv           DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  STAGE I                            31                           58
  STAGE IA                           33                           52
  STAGE IB                            2                            4
  STAGE II                            2                            4
  STAGE IIA                         162                          191
  STAGE IIB                         137                          115
  STAGE III                           1                            1
  STAGE IIIA                         86                           68
  STAGE IIIB                         12                           17
  STAGE IIIC                         27                           38
  STAGE IV                           10                           10
  STAGE TIS                           0                            1
  STAGE X                             8                            5
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  DEL PEAK 25(11Q25) MUTATED   106 316  73  17
  DEL PEAK 25(11Q25) WILD-TYPE 170 308  63  23
D54V4, multiclass
    clus
vv   DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  T1                        106                          170
  T2                        316                          308
  T3                         73                           63
  T4                         17                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  DEL PEAK 25(11Q25) MUTATED   226 181  65  31
  DEL PEAK 25(11Q25) WILD-TYPE 281 177  54  46
D54V5, multiclass
    clus
vv   DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  N0                        226                          281
  N1                        181                          177
  N2                         65                           54
  N3                         31                           46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V6, binary
                              cls
clus                             0   1
  DEL PEAK 25(11Q25) MUTATED   414  11
  DEL PEAK 25(11Q25) WILD-TYPE 475  11
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 25(11Q25) MUTATED    414   11
  DEL PEAK 25(11Q25) WILD-TYPE  475   11
   clus
vv  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  0                        414                          475
  1                         11                           11
[1] 2 2
[1] FALSE
D54V7, binary
                              cls
clus                             0   1
  DEL PEAK 25(11Q25) MUTATED   503  10
  DEL PEAK 25(11Q25) WILD-TYPE 565   2
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 25(11Q25) MUTATED    503   10
  DEL PEAK 25(11Q25) WILD-TYPE  565    2
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  FEMALE                        503                          565
  MALE                           10                            2
[1] 2 2
[1] FALSE
D54V8, binary
                              cls
clus                             0   1
  DEL PEAK 25(11Q25) MUTATED   204 244
  DEL PEAK 25(11Q25) WILD-TYPE 225 274
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 25(11Q25) MUTATED    204  244
  DEL PEAK 25(11Q25) WILD-TYPE  225  274
     clus
vv    DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  NO                         204                          225
  YES                        244                          274
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  DEL PEAK 25(11Q25) MUTATED                            1
  DEL PEAK 25(11Q25) WILD-TYPE                          0
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 25(11Q25) MUTATED                             377
  DEL PEAK 25(11Q25) WILD-TYPE                           393
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 25(11Q25) MUTATED                               92
  DEL PEAK 25(11Q25) WILD-TYPE                            108
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 25(11Q25) MUTATED                     5                     4
  DEL PEAK 25(11Q25) WILD-TYPE                   1                     5
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 25(11Q25) MUTATED                                 16
  DEL PEAK 25(11Q25) WILD-TYPE                               13
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 25(11Q25) MUTATED                    5             12
  DEL PEAK 25(11Q25) WILD-TYPE                 12             35
D54V9, multiclass
                                  clus
vv                                 DEL PEAK 25(11Q25) MUTATED
  INFILTRATING CARCINOMA NOS                                1
  INFILTRATING DUCTAL CARCINOMA                           377
  INFILTRATING LOBULAR CARCINOMA                           92
  MEDULLARY CARCINOMA                                       5
  METAPLASTIC CARCINOMA                                     4
  MIXED HISTOLOGY (PLEASE SPECIFY)                         16
  MUCINOUS CARCINOMA                                        5
  OTHER  SPECIFY                                           12
                                  clus
vv                                 DEL PEAK 25(11Q25) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             393
  INFILTRATING LOBULAR CARCINOMA                            108
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       5
  MIXED HISTOLOGY (PLEASE SPECIFY)                           13
  MUCINOUS CARCINOMA                                         12
  OTHER  SPECIFY                                             35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 25(11Q25) MUTATED                                  1    29
  DEL PEAK 25(11Q25) WILD-TYPE                                0    31
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 25(11Q25) MUTATED                         107   323
  DEL PEAK 25(11Q25) WILD-TYPE                        74   422
D54V11, multiclass
                                  clus
vv                                 DEL PEAK 25(11Q25) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                    29
  BLACK OR AFRICAN AMERICAN                               107
  WHITE                                                   323
                                  clus
vv                                 DEL PEAK 25(11Q25) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      31
  BLACK OR AFRICAN AMERICAN                                  74
  WHITE                                                     422
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V12, binary
                              cls
clus                             0   1
  DEL PEAK 25(11Q25) MUTATED    18 406
  DEL PEAK 25(11Q25) WILD-TYPE  21 469
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 25(11Q25) MUTATED     18  406
  DEL PEAK 25(11Q25) WILD-TYPE   21  469
                        clus
vv                       DEL PEAK 25(11Q25) MUTATED
  HISPANIC OR LATINO                             18
  NOT HISPANIC OR LATINO                        406
                        clus
vv                       DEL PEAK 25(11Q25) WILD-TYPE
  HISPANIC OR LATINO                               21
  NOT HISPANIC OR LATINO                          469
[1] 2 2
[1] FALSE

Clustering(55) Variable = DEL PEAK 26(12P13.1) MUTATION ANALYSIS
D55V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 26(12P13.1) MUTATED   154  31
  DEL PEAK 26(12P13.1) WILD-TYPE 763 116
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                           185                            879 
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                            31                            116 
$`DEL PEAK 26(12P13.1) MUTATED`
TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-A1-A0SI TCGA-A2-A04P TCGA-A2-A0CW TCGA-A2-A0D4 
       11.44        48.56        20.88        18.02       107.93        25.22 
TCGA-A2-A0EN TCGA-A2-A0EV TCGA-A2-A0T0 TCGA-A2-A0T7 TCGA-A2-A0YF TCGA-A2-A259 
       89.36        31.82        17.52        20.75        50.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A3XT TCGA-A2-A3XX TCGA-A2-A4RX TCGA-A2-A4S1 
       42.44        17.19        91.07        47.31        24.39        26.96 
TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A26I TCGA-A7-A2KD TCGA-A8-A06R TCGA-A8-A06T 
       30.61        35.67        21.73        22.32        17.98        53.06 
TCGA-A8-A075 TCGA-A8-A07G TCGA-A8-A085 TCGA-A8-A08F TCGA-A8-A08X TCGA-A8-A08Z 
       17.03        18.97        36.95        33.01        43.00        40.01 
TCGA-A8-A097 TCGA-A8-A09I TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09W TCGA-AC-A23H 
       12.00        45.07        25.02        19.04         0.99         5.72 
TCGA-AC-A2FM TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3W7 TCGA-AC-A5XS TCGA-AC-A6IV 
       26.04        19.33        14.66        15.48        19.33        18.67 
TCGA-AC-A7VB TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0FD 
        8.22         0.62         2.96         9.96         7.46         6.44 
TCGA-AN-A0FF TCGA-AN-A0FL TCGA-AN-A0FV TCGA-AN-A0XN TCGA-AN-A0XU TCGA-AO-A03L 
        5.65         7.59         0.33         0.33         0.33        80.28 
TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A0J2 TCGA-AO-A0JL TCGA-AO-A12D 
       81.63        68.75        47.87        32.78        55.33        64.04 
TCGA-AQ-A54O TCGA-AR-A0TR TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 
       32.91         5.26        55.86       107.24        65.36        83.87 
TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AR TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A251 
      125.16       101.00        17.23        50.89       120.33        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LM TCGA-B6-A0IG 
       93.30        85.64        93.83        66.15        63.62       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RP 
      112.37       233.62        18.77        68.45       234.28       102.77 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A409 
      282.90       157.41       101.52       139.17       170.17        18.84 
TCGA-BH-A0AZ TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B7 TCGA-BH-A0BP TCGA-BH-A0BW 
       63.09        40.83        39.55        84.13        75.48        77.95 
TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DQ 
       41.75        90.97        23.44        38.01        13.91         3.22 
TCGA-BH-A0DZ TCGA-BH-A0E6 TCGA-BH-A0EE TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0WA 
       16.27         9.63        31.00        23.08        26.50        23.05 
TCGA-BH-A1EN TCGA-BH-A1EV TCGA-BH-A1FG TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FU 
       67.50        12.00       122.89        45.63        72.07        72.07 
TCGA-BH-A202 TCGA-C8-A12U TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A1HG TCGA-C8-A1HI 
       26.14        12.66        13.51        12.59        11.34        11.28 
TCGA-C8-A1HN TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B 
       12.95        12.95         9.53         9.50        24.56        14.43 
TCGA-D8-A142 TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XK 
       13.97        18.90        53.00        18.58        23.90        14.50 
TCGA-D8-A1XM TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A27F TCGA-D8-A27N 
       17.69        16.41        16.64        16.54        16.04         4.80 
TCGA-E2-A10A TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14Z TCGA-E2-A155 TCGA-E2-A159 
       40.41        38.24        38.60        18.51        21.04        25.05 
TCGA-E2-A15E TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A1BD TCGA-E2-A1IO TCGA-E2-A1L8 
       20.71        11.05        19.56        37.25        60.99        73.64 
TCGA-E2-A1LA TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1NH 
       24.59         8.75        43.04        17.69        22.29        18.94 
TCGA-E9-A1R4 TCGA-E9-A1RH TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A248 TCGA-E9-A3QA 
        6.12        46.59        32.05        37.74         1.94        30.18 
TCGA-E9-A3X8 TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A1P5 
       30.44        25.81        26.40        28.77        29.85        23.11 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A2FV TCGA-EW-A6SA TCGA-EW-A6SC TCGA-EW-A6SD 
        6.15        13.94        25.91        16.77        31.30        33.21 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FR TCGA-LL-A73Z 
       85.15        86.96        15.32        14.79        16.08         7.46 
TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RU TCGA-OL-A66K TCGA-UU-A93S 
       19.59        58.52        40.08        41.92         3.81 

$`DEL PEAK 26(12P13.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-5L-AAT1 TCGA-5T-A9QA 
      129.14       131.67        42.81        40.14        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP 
       13.68        31.79         7.96        39.32        28.01        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
       18.21       143.15        78.41       121.94        73.84        87.25 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       24.79       114.81        92.48        88.60       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 
       75.25         5.19        98.99        56.81        67.33        34.55 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       33.76        61.58       101.72        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX 
       74.40        72.00        35.05        34.29        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YH 
       18.90        32.55        25.28        18.21        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       49.48        18.61        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.47        17.36        60.72        22.45        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
       19.56        16.47       107.70        18.15       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       36.23        39.65        33.93        29.98        32.75        56.28 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A2-A4S0 
       35.93        50.37        50.83         7.30        21.30        23.21 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       21.14        21.90        38.30        35.31        34.29        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       37.45        33.11        29.79        31.73        20.19        25.15 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H 
       23.61        29.56        31.36        24.26        23.74        23.80 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF 
       20.61        11.34        10.59        10.29        11.28        13.41 
TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE 
       14.70        11.97        14.93        13.74        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV 
       17.92        14.73        12.10        10.72        11.05        10.29 
TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
        9.37        10.42         8.75        13.02        13.02         1.02 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 
       29.03        31.00        26.01         1.02        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       43.00        19.99        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
        9.99        10.98         8.98         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       45.07        15.06        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
        0.99        33.01       112.08        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D 
       41.98         9.99         9.99        12.00         1.02        50.04 
TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09V 
       49.05        29.98        33.07         1.02         8.98        15.02 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04         0.95        22.95        73.91 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
        1.48        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A3BB TCGA-AC-A3EH 
       60.92        87.12        74.14        33.04        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN 
       16.31        14.83        22.19        24.13        25.05        14.99 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH 
       16.57        19.79        23.24        24.79        29.26        16.80 
TCGA-AC-A5EI TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IW 
       14.53        14.96        11.44        13.71        17.42        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OR 
       12.26         1.68         0.03        20.19         1.12         1.32 
TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04C 
        2.30         0.33         0.33         0.23         0.33         1.78 
TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        1.71         7.36         0.16         0.33         0.33         0.33 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FW 
        7.96         7.00         7.17         6.90         7.04         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.33         0.33         5.36        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M 
        0.33         0.33         0.33         5.33         5.59        61.35 
TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 
       66.77        95.70        58.95        29.13        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       50.70        50.86        72.00        76.77        65.10        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       50.24        62.04        71.80       115.27        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F 
      106.78       108.03        90.58        98.27        57.30        48.36 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR 
       41.62        40.57        14.73        82.62        61.87        70.39 
TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 
        0.53        17.79        24.79        26.93       130.09         5.65 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ 
       15.62        32.52         2.56        19.20       140.55        98.33 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0U1 
       84.10       109.02        75.22        98.93        64.83       133.22 
TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      134.14       107.21       108.36       103.86        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AU 
       96.00        86.07        93.90        99.32        37.81        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L 
       61.28        86.53        86.43        33.73       160.90        94.22 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27        77.69       105.30        32.58        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       89.00        71.05       166.42        20.25        86.53        54.21 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN 
       38.17        39.39        40.54        57.27        73.35        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 
       38.96        10.59        77.62       143.38       281.29        12.13 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IM TCGA-B6-A0IN 
      275.87       129.57        50.70        65.72       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RL 
      165.76       129.07       140.88       255.68       212.25        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT 
       78.02       263.28       162.05       140.48       100.70        89.46 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.63        18.35        21.47       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.88 
TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
       43.59        73.51        37.87         7.07        85.35        70.16 
TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       68.12       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B9 
       25.55        81.44        39.16        70.22        81.63        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       37.22        32.02        18.21        43.53        61.51        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       74.89        61.68        72.23        74.14        76.60        53.95 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD 
       45.57        49.94        49.05        44.02        89.06        45.83 
TCGA-BH-A0DE TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS 
       77.98        29.98        78.28        17.26        15.65         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       38.47        67.86        70.88         4.41        15.68        14.30 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        46.19        32.58        24.49        24.43        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 
       10.78        15.16        37.78        53.26        24.56        41.00 
TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       52.96        20.38         5.85         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       24.95        42.35        44.81        32.91         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
       20.12        90.84        26.66        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       55.63        37.55        66.05         7.36        51.39        51.16 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX 
       91.99       113.82        82.85        42.28        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 
       17.69        25.81        31.53        89.16        97.48        24.62 
TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FH TCGA-BH-A1FJ 
      120.62       114.15        33.17        74.73        36.92        63.35 
TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.00       144.59        28.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        10.65         6.44        20.12        10.52       109.28 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       20.88        18.64        23.51         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       18.87        21.76         9.44        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A137 
       48.53        12.56         3.16         1.87        12.92         4.11 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL 
        4.08        12.33        10.92         0.16        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z 
       12.33        12.33        20.25        12.53        12.36         8.28 
TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
        9.67         0.03        33.99        12.95        13.02        12.49 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 
       13.41        19.46        56.81        20.88        13.25        20.58 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       14.17        13.48        21.14        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JF TCGA-D8-A1JH 
       16.50        55.50        15.78        18.15        12.03        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 
       21.01        12.20        13.32        14.70        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF 
       25.74        27.58        18.15        12.39        17.16        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS 
       14.73        21.80        19.92        55.30        15.85        16.31 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       12.99        15.16        43.04        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.24        14.14        17.42        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       48.03        16.41        13.48         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       12.53        12.26        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       12.66        25.22        43.00        34.42        27.52        46.59 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       40.96        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       31.96        69.34        63.62        69.96        23.24        19.43 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F 
       23.87        14.79        23.34        22.82        17.29        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15O TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       50.79        56.94        14.07        51.39        76.57        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE 
       87.22        33.01        32.35        28.50        16.47        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        70.36        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
        3.88        22.19        11.08        54.18        60.36        19.66 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A2P5 
       75.81        28.90        50.07       106.75       102.61        26.99 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       34.29        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 
        9.86        24.82        28.27        34.95         2.56         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A228 
       46.65         6.58        21.27        47.64        34.45        42.25 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
       20.12         0.69        38.99         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A54Y 
       29.72         9.47        38.07        32.91        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
       26.70         0.79        27.85        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        15.68        25.94 
TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 
       22.82        29.95        40.41        41.13        39.78        52.96 
TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       29.82        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       10.52        14.43        34.55        19.96        55.00        52.73 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 
       22.09        34.03        17.49        10.16        23.51        15.22 
TCGA-EW-A6SB TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       24.99         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DL TCGA-GM-A2DM 
       83.34        75.02        70.85        72.10       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      101.62        85.35       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 
       11.84        11.57        21.24        13.22         7.10        13.28 
TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL 
       10.62        24.95        32.75        29.23        25.05        17.06 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A740 
       14.70        14.47        22.26         2.63        15.68        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       19.53        12.36        17.49        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       36.30        31.99        58.62        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ 
       42.77        26.04        17.36        14.07        28.21        19.73 
TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX 
       40.11         8.91        47.01        64.21        86.96         0.16 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z 
        0.26         9.93        18.81        18.48        21.07        20.68 
TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       19.27        13.84        18.87        17.39        17.26        13.94 
TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
       17.03        66.84        11.41        52.96        29.03        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                          0.33                           0.03 
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                        282.90                         281.29 
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                         25.91                          28.27 
[1] "0.3 - 282.9 (25.9)" "0.0 - 281.3 (28.3)"
[1] "hr=" "1.2"
D55V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 26(12P13.1) MUTATED        14       12        0        3        62
  DEL PEAK 26(12P13.1) WILD-TYPE      75       73        6        3       291
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 26(12P13.1) MUTATED          50         0         26         10
  DEL PEAK 26(12P13.1) WILD-TYPE       202         2        128         19
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 26(12P13.1) MUTATED            8        2         0       1
  DEL PEAK 26(12P13.1) WILD-TYPE         57       18         1      12
D55V3, multiclass
            clus
vv           DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  STAGE I                              14                             75
  STAGE IA                             12                             73
  STAGE IB                              0                              6
  STAGE II                              3                              3
  STAGE IIA                            62                            291
  STAGE IIB                            50                            202
  STAGE III                             0                              2
  STAGE IIIA                           26                            128
  STAGE IIIB                           10                             19
  STAGE IIIC                            8                             57
  STAGE IV                              2                             18
  STAGE TIS                             0                              1
  STAGE X                               1                             12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 26(12P13.1) MUTATED    42 116  19  11
  DEL PEAK 26(12P13.1) WILD-TYPE 234 508 117  29
D55V4, multiclass
    clus
vv   DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  T1                           42                            234
  T2                          116                            508
  T3                           19                            117
  T4                           11                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 26(12P13.1) MUTATED    88  62  22  11
  DEL PEAK 26(12P13.1) WILD-TYPE 419 296  97  66
D55V5, multiclass
    clus
vv   DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  N0                           88                            419
  N1                           62                            296
  N2                           22                             97
  N3                           11                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V6, binary
                                cls
clus                               0   1
  DEL PEAK 26(12P13.1) MUTATED   163   3
  DEL PEAK 26(12P13.1) WILD-TYPE 726  19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(12P13.1) MUTATED    163    3
  DEL PEAK 26(12P13.1) WILD-TYPE  726   19
   clus
vv  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  0                          163                            726
  1                            3                             19
[1] 2 2
[1] FALSE
D55V7, binary
                                cls
clus                               0   1
  DEL PEAK 26(12P13.1) MUTATED   184   4
  DEL PEAK 26(12P13.1) WILD-TYPE 884   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(12P13.1) MUTATED    184    4
  DEL PEAK 26(12P13.1) WILD-TYPE  884    8
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  FEMALE                          184                            884
  MALE                              4                              8
[1] 2 2
[1] FALSE
D55V8, binary
                                cls
clus                               0   1
  DEL PEAK 26(12P13.1) MUTATED    75  90
  DEL PEAK 26(12P13.1) WILD-TYPE 354 428
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(12P13.1) MUTATED     75   90
  DEL PEAK 26(12P13.1) WILD-TYPE  354  428
     clus
vv    DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  NO                            75                            354
  YES                           90                            428
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 26(12P13.1) MUTATED                            0
  DEL PEAK 26(12P13.1) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 26(12P13.1) MUTATED                             157
  DEL PEAK 26(12P13.1) WILD-TYPE                           613
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 26(12P13.1) MUTATED                               19
  DEL PEAK 26(12P13.1) WILD-TYPE                            181
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 26(12P13.1) MUTATED                     1                     3
  DEL PEAK 26(12P13.1) WILD-TYPE                   5                     6
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 26(12P13.1) MUTATED                                  3
  DEL PEAK 26(12P13.1) WILD-TYPE                               26
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 26(12P13.1) MUTATED                    1              3
  DEL PEAK 26(12P13.1) WILD-TYPE                 16             44
D55V9, multiclass
                                  clus
vv                                 DEL PEAK 26(12P13.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             157
  INFILTRATING LOBULAR CARCINOMA                             19
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            3
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                              3
                                  clus
vv                                 DEL PEAK 26(12P13.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               613
  INFILTRATING LOBULAR CARCINOMA                              181
  MEDULLARY CARCINOMA                                           5
  METAPLASTIC CARCINOMA                                         6
  MIXED HISTOLOGY (PLEASE SPECIFY)                             26
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               44
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 26(12P13.1) MUTATED                                  0    13
  DEL PEAK 26(12P13.1) WILD-TYPE                                1    47
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 26(12P13.1) MUTATED                          32   128
  DEL PEAK 26(12P13.1) WILD-TYPE                       149   617
D55V11, multiclass
                                  clus
vv                                 DEL PEAK 26(12P13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      13
  BLACK OR AFRICAN AMERICAN                                  32
  WHITE                                                     128
                                  clus
vv                                 DEL PEAK 26(12P13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        47
  BLACK OR AFRICAN AMERICAN                                   149
  WHITE                                                       617
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V12, binary
                                cls
clus                               0   1
  DEL PEAK 26(12P13.1) MUTATED     8 151
  DEL PEAK 26(12P13.1) WILD-TYPE  31 724
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(12P13.1) MUTATED      8  151
  DEL PEAK 26(12P13.1) WILD-TYPE   31  724
                        clus
vv                       DEL PEAK 26(12P13.1) MUTATED
  HISPANIC OR LATINO                                8
  NOT HISPANIC OR LATINO                          151
                        clus
vv                       DEL PEAK 26(12P13.1) WILD-TYPE
  HISPANIC OR LATINO                                 31
  NOT HISPANIC OR LATINO                            724
[1] 2 2
[1] FALSE

Clustering(56) Variable = DEL PEAK 27(12Q23.1) MUTATION ANALYSIS
D56V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 27(12Q23.1) MUTATED   167  32
  DEL PEAK 27(12Q23.1) WILD-TYPE 750 115
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           199                            865 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                            32                            115 
$`DEL PEAK 27(12Q23.1) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SP TCGA-A2-A04T TCGA-A2-A04U 
      129.14        48.10        13.68        19.20        73.84        87.25 
TCGA-A2-A0CL TCGA-A2-A0D1 TCGA-A2-A0T0 TCGA-A2-A0YE TCGA-A2-A0YM TCGA-A2-A0YT 
       99.12        34.55        17.52        18.21        31.73        23.77 
TCGA-A2-A3XS TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S1 
       33.93        47.31        35.93        50.83        24.39        26.96 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26F TCGA-A7-A26I 
       21.90        35.31        31.73        20.19        24.26        21.73 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       14.50        21.17        17.92        10.29         9.37        10.42 
TCGA-A8-A06Z TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08L TCGA-A8-A08R TCGA-A8-A08X 
        1.02        38.01        33.01         9.99         0.99        43.00 
TCGA-A8-A09D TCGA-A8-A09Q TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-AC-A23E TCGA-AC-A2FO 
       50.04        25.02         0.99        27.02        22.95        74.14 
TCGA-AC-A2QJ TCGA-AC-A3W5 TCGA-AC-A3W7 TCGA-AC-A7VB TCGA-AC-A8OQ TCGA-AN-A04C 
       14.66        16.57        15.48         8.22         1.12         1.78 
TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FZ 
        0.16         0.33         7.96         7.00         7.59         0.33 
TCGA-AN-A0XO TCGA-AO-A03O TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0JB TCGA-AO-A0JL 
       12.33        81.63        32.78        52.18        50.70        55.33 
TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12F TCGA-AO-A1KQ TCGA-AQ-A04H TCGA-AQ-A04J 
      115.27       108.03        48.36        61.87        24.79        26.93 
TCGA-AQ-A04L TCGA-AR-A0TS TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A1AI 
      130.09        84.10        64.83        65.36       133.22       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A24K TCGA-AR-A24S 
      101.00        93.90        99.32        17.23        50.89        97.84 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A256 TCGA-AR-A2LL TCGA-AR-A2LN TCGA-B6-A0IG 
       99.62        93.30        93.83        66.15        38.17       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RP TCGA-B6-A0RU 
      112.37       233.62       255.68       212.25       102.77       282.90 
TCGA-B6-A0WX TCGA-B6-A1KF TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-BH-A0AV 
       21.47       101.52        70.16        68.12        18.84        59.84 
TCGA-BH-A0B2 TCGA-BH-A0B7 TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0C0 
       40.83        84.13        74.89        75.48        76.60        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0EE 
       44.02        90.97        70.88         4.41        14.30        31.00 
TCGA-BH-A0H9 TCGA-BH-A0HY TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EV 
       41.00        50.79        51.16        67.50        91.99        12.00 
TCGA-BH-A1EW TCGA-BH-A1F6 TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A208 TCGA-BH-A5IZ 
       55.69        97.48        72.07        72.07        57.83        18.64 
TCGA-C8-A12P TCGA-C8-A12U TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 
       11.77        12.66        12.56         3.16        13.51        12.92 
TCGA-C8-A1HG TCGA-C8-A1HO TCGA-C8-A26Y TCGA-C8-A275 TCGA-C8-A27A TCGA-D8-A13Y 
       11.34        12.33        12.95         0.03        24.56        56.81 
TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A1X5 TCGA-D8-A1XG TCGA-D8-A1XJ 
       13.25        13.97        14.17        18.58        14.73        21.80 
TCGA-D8-A1XK TCGA-D8-A27F TCGA-D8-A27T TCGA-D8-A27V TCGA-E2-A10C TCGA-E2-A14T 
       14.50        16.04        13.08        12.53        40.11        75.98 
TCGA-E2-A150 TCGA-E2-A159 TCGA-E2-A1AZ TCGA-E2-A1B5 TCGA-E2-A1BD TCGA-E2-A1IH 
       63.62        25.05        76.57        32.35        37.25        33.73 
TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       60.99        60.36       106.75       102.61         8.75        43.04 
TCGA-E2-A2P5 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N9 TCGA-E9-A1NA 
       26.99        34.92        38.76        17.69        36.20        36.56 
TCGA-E9-A1ND TCGA-E9-A1NH TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A22E TCGA-E9-A22G 
       41.62        18.94        46.65        21.27        41.72        40.73 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5UP TCGA-EW-A1OY TCGA-EW-A1P4 TCGA-EW-A1P8 
       30.18        30.44        26.40        29.85        29.82         7.86 
TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A6SA TCGA-EW-A6SD 
        6.15        19.96        17.49        10.16        16.77        33.21 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DI TCGA-GM-A3NY TCGA-GM-A3XL 
        7.40       109.87        59.57        85.15        38.20        69.30 
TCGA-JL-A3YW TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A73Z 
       11.84        13.22         7.10        14.79        22.26         7.46 
TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66K TCGA-OL-A6VO 
       19.59        58.52        36.36        20.38        41.92        28.21 
TCGA-W8-A86G 
       11.41 

$`DEL PEAK 27(12Q23.1) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        14.37        43.43        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SQ 
       20.88        31.79         7.96        39.32        28.01        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W 
      143.15        18.02        78.41       121.94        63.12       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43        36.13       136.73        24.79       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       88.60       107.93        77.19        75.25         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
      107.93        56.81        67.33        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72        89.36        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FV 
       21.67        49.48        18.61        19.33        48.46        23.47 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 
       17.36        60.72        22.45        20.25        19.20        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       16.47        52.47       107.70        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A3XU 
      105.34        10.59        36.23        39.65        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A2-A4S0 
       32.75        56.28        50.37         7.30        21.30        23.21 
TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.14        38.30        34.29        35.47        30.61        37.45 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H 
       35.67        33.11        29.79        25.15        23.61        29.56 
TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY 
       31.36        23.74        23.80        20.61        22.32        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       10.59        10.29        11.28        13.41        14.70        11.97 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       14.93        13.74        14.73        12.10        10.72        11.05 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
        8.75        13.02        13.02         1.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       29.03        31.00        26.01        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U 
       32.05         9.99        10.98         8.98         7.99        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        15.06        36.95        13.02         0.99 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P 
       28.96        19.96        12.00        37.05        31.00        31.00 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
       33.01       112.08        40.01        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C 
       41.98        12.00         9.99         9.99        12.00         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R 
       49.05        45.07        29.98        33.07         1.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G 
       13.02        21.04        17.03        38.04         0.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72         1.48        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QI 
       90.71        60.92        87.12        26.04        33.04        19.33 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ 
       32.45         6.48        16.31        14.83        22.19        24.13 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE 
       25.05        14.99        19.79        23.24        24.79        29.26 
TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62X 
       16.80        14.53        19.33        14.96        11.44        13.71 
TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VC 
       17.42        18.67        13.58        12.26         1.68         0.03 
TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       20.19         1.32         2.30         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.33         0.62         2.96         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FN 
        7.46         0.33         0.33         6.44         5.65         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        5.36         0.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 
       95.70        68.75        47.87        58.95        29.13        21.40 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI 
       50.86        72.00        76.77        65.10        26.24        50.24 
TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A 
       62.04        71.80        99.25       108.72       106.78        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        64.04        57.30        41.62        40.57        14.73 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       82.62        70.39         0.53        17.79         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ 
       32.52         2.56        32.91        19.20       140.55        98.33 
TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ 
        5.26       109.02        75.22        98.93        55.86       107.24 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AK TCGA-AR-A1AL 
       83.87       134.14       107.21       125.16       103.86        97.68 
TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV 
       98.33        96.00        86.07        37.81        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M 
       86.53        86.43        33.73       160.90        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T 
       99.78       118.59         2.76       104.28       112.77       105.27 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
       77.69       105.30        32.58        98.76        98.66        89.00 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       85.64        71.05       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN 
       63.62        39.39        40.54        57.27        73.35        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 
       38.96        10.59        77.62       143.38       281.29        12.13 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IK TCGA-B6-A0IM 
      275.87       129.57        50.70        65.72        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RI 
       84.59       165.76       129.07       140.88        68.45       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RS 
       81.17        78.02       263.28       162.05       140.48       100.70 
TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
       89.46       157.41        97.48       188.68        79.63        18.35 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       58.88        43.59        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW 
        7.07        85.35       103.63        71.15        62.93        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       25.55        63.09        81.44        39.55        39.16        70.22 
TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       81.63        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS 
       61.51        21.70        61.68        72.23        74.14        53.95 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0DD 
       45.57        49.94        77.95        49.05        89.06        45.83 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        23.44        38.01        29.98        13.91        78.28 
TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       17.26        15.65         3.22         2.56        38.47        67.86 
TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
       16.27        15.68         9.63        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       24.49        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       53.26        24.56        23.08        52.96        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       27.25         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       66.05         7.36        51.39       113.82        82.85        42.28 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        89.16        24.62 
TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
      120.62       114.15        33.17        74.73       122.89        36.92 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A202 
       63.35        55.00        45.63       144.59        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       38.60        83.31       130.16        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 
       10.52       109.28        20.88        23.51         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M 
        9.70        18.87        21.76         9.44        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       48.53         1.87        12.59         4.11         4.08        12.33 
TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM 
       10.92        11.28         0.16        12.03        10.42        12.33 
TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 
       12.95        20.25        12.53        12.36         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP 
        9.53         9.50        14.43        33.99        12.95        13.02 
TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A145 
       12.49        13.41        19.46        20.88        20.58        13.48 
TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       21.14        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 
       21.01        12.20        13.32        14.70        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       25.74        23.90        27.58        18.15        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       15.22        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31        16.64        12.99        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
        4.80         1.61        10.09        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 
       21.67        16.18        12.66        25.22        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F 
       27.52        46.59        40.41        37.51        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       43.33        34.26        32.02        31.96        69.34        18.51 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 
       69.96        23.24        19.43        21.04        23.87        14.79 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G 
       23.34        22.82        17.29        20.71        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 
       50.79        19.56        56.94        14.07        51.39        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF 
       87.22        33.01        28.50        16.47        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       70.36        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        73.64        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       28.90        50.07        34.55        43.56         8.28        30.61 
TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 
       34.29        34.82        32.88        36.82        22.29        34.16 
TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ 
       39.55        35.77        35.24        25.84         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       28.27        34.95         2.56         6.12         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RF 
       48.23        45.01        32.09        40.24         1.12         6.58 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       39.09        38.37        41.03        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
        9.47        38.07        32.91        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        25.81        27.85        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 
       18.21        18.90        13.25        16.57        15.68        28.77 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        22.82        29.95        40.41        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB 
       52.96        23.11        18.48        30.08        18.90        19.99 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FS 
       13.94        10.52        14.43        34.55        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SB 
       25.91        22.09        34.03        23.51        15.22        24.99 
TCGA-EW-A6SC TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF 
       31.30       216.76        79.10        83.34        75.02        70.85 
TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       72.10        86.96       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
      110.50        43.73        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A7W6 TCGA-LD-A9QF 
        2.60        62.47        11.57        21.24        13.28        10.62 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
       24.95        32.75        29.23        25.05        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 
       14.70        14.47         2.63        16.08        15.68        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       19.53        12.36        17.49        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       36.30        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L 
       24.72        22.32        26.70        23.47        65.62        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       26.04        17.36        14.07        19.73        40.11         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ 
       47.01        64.21        86.96         0.16         0.26         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 
       18.81        18.48        21.07        20.68        19.27        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S 
       18.87        17.39        17.26        13.94        17.03         3.81 
TCGA-V7-A7HQ TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       66.84        52.96        29.03        15.35        16.04       108.07 
TCGA-Z7-A8R6 
      107.05 

  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                        282.90                         281.29 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                         32.78                          26.24 
[1] "0.0 - 282.9 (32.8)" "0.0 - 281.3 (26.2)"
[1] "hr=" "1"  
D56V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 27(12Q23.1) MUTATED        17        8        0        1        71
  DEL PEAK 27(12Q23.1) WILD-TYPE      72       77        6        5       282
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 27(12Q23.1) MUTATED          51         0         27          8
  DEL PEAK 27(12Q23.1) WILD-TYPE       201         2        127         21
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 27(12Q23.1) MUTATED           13        2         0       2
  DEL PEAK 27(12Q23.1) WILD-TYPE         52       18         1      11
D56V3, multiclass
            clus
vv           DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  STAGE I                              17                             72
  STAGE IA                              8                             77
  STAGE IB                              0                              6
  STAGE II                              1                              5
  STAGE IIA                            71                            282
  STAGE IIB                            51                            201
  STAGE III                             0                              2
  STAGE IIIA                           27                            127
  STAGE IIIB                            8                             21
  STAGE IIIC                           13                             52
  STAGE IV                              2                             18
  STAGE TIS                             0                              1
  STAGE X                               2                             11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 27(12Q23.1) MUTATED    37 130  22  10
  DEL PEAK 27(12Q23.1) WILD-TYPE 239 494 114  30
D56V4, multiclass
    clus
vv   DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  T1                           37                            239
  T2                          130                            494
  T3                           22                            114
  T4                           10                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 27(12Q23.1) MUTATED    98  62  24  13
  DEL PEAK 27(12Q23.1) WILD-TYPE 409 296  95  64
D56V5, multiclass
    clus
vv   DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  N0                           98                            409
  N1                           62                            296
  N2                           24                             95
  N3                           13                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V6, binary
                                cls
clus                               0   1
  DEL PEAK 27(12Q23.1) MUTATED   168   2
  DEL PEAK 27(12Q23.1) WILD-TYPE 721  20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(12Q23.1) MUTATED    168    2
  DEL PEAK 27(12Q23.1) WILD-TYPE  721   20
   clus
vv  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  0                          168                            721
  1                            2                             20
[1] 2 2
[1] FALSE
D56V7, binary
                                cls
clus                               0   1
  DEL PEAK 27(12Q23.1) MUTATED   199   2
  DEL PEAK 27(12Q23.1) WILD-TYPE 869  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(12Q23.1) MUTATED    199    2
  DEL PEAK 27(12Q23.1) WILD-TYPE  869   10
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  FEMALE                          199                            869
  MALE                              2                             10
[1] 2 2
[1] FALSE
D56V8, binary
                                cls
clus                               0   1
  DEL PEAK 27(12Q23.1) MUTATED    75 101
  DEL PEAK 27(12Q23.1) WILD-TYPE 354 417
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(12Q23.1) MUTATED     75  101
  DEL PEAK 27(12Q23.1) WILD-TYPE  354  417
     clus
vv    DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  NO                            75                            354
  YES                          101                            417
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 27(12Q23.1) MUTATED                            0
  DEL PEAK 27(12Q23.1) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 27(12Q23.1) MUTATED                             162
  DEL PEAK 27(12Q23.1) WILD-TYPE                           608
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 27(12Q23.1) MUTATED                               21
  DEL PEAK 27(12Q23.1) WILD-TYPE                            179
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 27(12Q23.1) MUTATED                     3                     3
  DEL PEAK 27(12Q23.1) WILD-TYPE                   3                     6
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 27(12Q23.1) MUTATED                                  4
  DEL PEAK 27(12Q23.1) WILD-TYPE                               25
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 27(12Q23.1) MUTATED                    0              8
  DEL PEAK 27(12Q23.1) WILD-TYPE                 17             39
D56V9, multiclass
                                  clus
vv                                 DEL PEAK 27(12Q23.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             162
  INFILTRATING LOBULAR CARCINOMA                             21
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            4
  MUCINOUS CARCINOMA                                          0
  OTHER  SPECIFY                                              8
                                  clus
vv                                 DEL PEAK 27(12Q23.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               608
  INFILTRATING LOBULAR CARCINOMA                              179
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         6
  MIXED HISTOLOGY (PLEASE SPECIFY)                             25
  MUCINOUS CARCINOMA                                           17
  OTHER  SPECIFY                                               39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 27(12Q23.1) MUTATED                                  0    13
  DEL PEAK 27(12Q23.1) WILD-TYPE                                1    47
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 27(12Q23.1) MUTATED                          50   125
  DEL PEAK 27(12Q23.1) WILD-TYPE                       131   620
D56V11, multiclass
                                  clus
vv                                 DEL PEAK 27(12Q23.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      13
  BLACK OR AFRICAN AMERICAN                                  50
  WHITE                                                     125
                                  clus
vv                                 DEL PEAK 27(12Q23.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        47
  BLACK OR AFRICAN AMERICAN                                   131
  WHITE                                                       620
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V12, binary
                                cls
clus                               0   1
  DEL PEAK 27(12Q23.1) MUTATED     7 169
  DEL PEAK 27(12Q23.1) WILD-TYPE  32 706
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(12Q23.1) MUTATED      7  169
  DEL PEAK 27(12Q23.1) WILD-TYPE   32  706
                        clus
vv                       DEL PEAK 27(12Q23.1) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                          169
                        clus
vv                       DEL PEAK 27(12Q23.1) WILD-TYPE
  HISPANIC OR LATINO                                 32
  NOT HISPANIC OR LATINO                            706
[1] 2 2
[1] FALSE

Clustering(57) Variable = DEL PEAK 28(12Q24.31) MUTATION ANALYSIS
D57V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 28(12Q24.31) MUTATED   173  36
  DEL PEAK 28(12Q24.31) WILD-TYPE 744 111
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            209                             855 
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                             36                             111 
$`DEL PEAK 28(12Q24.31) MUTATED`
TCGA-3C-AAAU TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SJ TCGA-A1-A0SP TCGA-A2-A04P 
      129.14        43.43        48.10        13.68        19.20        18.02 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A0CO TCGA-A2-A0D1 TCGA-A2-A0ES TCGA-A2-A0EY 
       73.84        87.25       114.81        34.55        72.00        63.29 
TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0YE TCGA-A2-A0YT TCGA-A2-A3XS TCGA-A2-A3XX 
       27.12        17.52        18.21        23.77        33.93        47.31 
TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A7-A0CE TCGA-A7-A0CG 
       35.93        50.83        24.39        26.96        35.31        34.29 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26I TCGA-A7-A4SA 
       31.73        20.19        29.56        24.26        21.73        14.93 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX 
       14.50        21.17        17.92        10.29         9.37        10.42 
TCGA-A8-A06Z TCGA-A8-A07R TCGA-A8-A08B TCGA-A8-A08L TCGA-A8-A08R TCGA-A8-A08X 
        1.02         8.98        38.01         9.99         0.99        43.00 
TCGA-A8-A09D TCGA-A8-A09Q TCGA-A8-A09X TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-AC-A23E 
       50.04        25.02        14.01         0.99        27.02        22.95 
TCGA-AC-A2FO TCGA-AC-A2QJ TCGA-AC-A3EH TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 
       74.14        14.66         6.48        16.57        19.79        15.48 
TCGA-AC-A5XU TCGA-AC-A7VB TCGA-AC-A8OQ TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AS 
       14.96         8.22         1.12         1.78         9.96         0.33 
TCGA-AN-A0AT TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FZ 
        0.33         7.96         7.00         7.59         7.04         0.33 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XU TCGA-AO-A03O TCGA-AO-A0J2 TCGA-AO-A0J4 
        0.33        12.33         0.33        81.63        32.78        52.18 
TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12F 
       50.70        72.00        55.33       115.27       108.03        48.36 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A1AI TCGA-AR-A1AJ 
       26.93       130.09        64.83        65.36       108.36       101.00 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A24K TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A251 
       99.32        17.23        50.89       104.28        97.84        99.62 
TCGA-AR-A252 TCGA-AR-A2LL TCGA-AR-A2LN TCGA-B6-A0IH TCGA-B6-A0RE TCGA-B6-A0RP 
       93.30        66.15        38.17       112.37       255.68       102.77 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WX TCGA-B6-A1KF TCGA-B6-A402 TCGA-B6-A408 
      282.90       157.41        21.47       101.52        70.16        68.12 
TCGA-B6-A409 TCGA-BH-A0AV TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B7 TCGA-BH-A0BL 
       18.84        59.84        81.44        40.83        84.13        74.89 
TCGA-BH-A0BP TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DX TCGA-BH-A0E0 
       75.48        41.75        44.02        90.97        70.88         4.41 
TCGA-BH-A0E2 TCGA-BH-A0EE TCGA-BH-A0H9 TCGA-BH-A0HY TCGA-BH-A18V TCGA-BH-A1EN 
       14.30        31.00        41.00        50.79        51.16        67.50 
TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F6 TCGA-BH-A1FN 
       91.99        12.00        55.69        17.69        97.48        72.07 
TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A208 TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A8FZ 
       72.07        26.14        57.83        18.64        23.51        18.87 
TCGA-C8-A12U TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A1HG 
       12.66        12.56        13.51         1.87        12.92        11.34 
TCGA-C8-A1HO TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27A TCGA-D8-A13Y TCGA-D8-A142 
       12.33        12.95         9.50        24.56        56.81        13.97 
TCGA-D8-A143 TCGA-D8-A1JD TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1XJ TCGA-D8-A1XK 
       14.17        18.15        20.12        19.40        21.80        14.50 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A27M TCGA-D8-A27T TCGA-D8-A27V TCGA-E2-A10C 
       55.30        16.41        13.48        13.08        12.53        40.11 
TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A150 TCGA-E2-A154 TCGA-E2-A159 TCGA-E2-A15E 
       38.60        75.98        63.62        19.43        25.05        20.71 
TCGA-E2-A1AZ TCGA-E2-A1BD TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1LG TCGA-E2-A1LH 
       76.57        37.25        60.99        60.36        50.07       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU 
      102.61         8.75        26.99        34.92        38.76        17.69 
TCGA-E9-A1N9 TCGA-E9-A1NH TCGA-E9-A1R2 TCGA-E9-A1RG TCGA-E9-A22E TCGA-E9-A244 
       36.20        18.94        34.95        21.27        41.72         0.69 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5UP TCGA-EW-A1OY TCGA-EW-A1P4 TCGA-EW-A1P8 
       30.18        30.44        26.40        29.85        29.82         7.86 
TCGA-EW-A1PH TCGA-EW-A6SA TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DI 
       19.96        16.77        33.21         7.40       109.87        85.15 
TCGA-GM-A3NY TCGA-GM-A3XL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U 
       38.20        69.30        62.47        11.84        21.24        13.22 
TCGA-LD-A7W5 TCGA-LL-A5YP TCGA-LL-A73Z TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66K 
        7.10        14.79         7.46        22.32        20.38        41.92 
TCGA-OL-A6VO TCGA-S3-AA10 TCGA-S3-AA17 TCGA-UU-A93S TCGA-W8-A86G 
       28.21        19.27        13.94         3.81        11.41 

$`DEL PEAK 28(12Q24.31) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      131.67        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
        9.96         8.52        14.37        14.27        47.24        20.88 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04N 
       31.79         7.96        39.32        28.01        18.21       143.15 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y 
       78.41       121.94        63.12       101.98        55.43        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12        24.79        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       67.33        33.76        61.58        25.22       101.72        89.36 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ET TCGA-A2-A0EU 
       80.28       118.45        79.76        74.40        35.05        34.29 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW 
       31.82        61.94        24.72        99.19        54.64        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       50.43        44.28        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       17.46        18.90        20.75        32.55        25.28        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       31.73        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       19.20        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XZ TCGA-A2-A4RW 
       91.07        29.98        32.75        56.28        50.37         7.30 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CH 
       21.30        23.21        21.14        21.90        38.30        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13F 
       30.61        37.45        35.67        33.11        29.79        25.15 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD 
       23.61        31.36        23.74        23.80        20.61        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       11.34        10.59        10.29        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX 
       11.97        13.74        14.73        12.10        10.72        11.05 
TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T 
        8.75        13.02        13.02         1.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       29.03        31.00        26.01        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C 
       45.07        15.06        36.95        13.02         0.99        28.96 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P 
       33.01        19.96        12.00        37.05        31.00        31.00 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
       33.01       112.08        40.01        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09C 
       41.98        12.00         9.99         9.99        12.00         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09R 
       49.05        45.07        29.98        33.07         1.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       19.04        15.02         0.99        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H 
       21.04        17.03        38.04         0.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
        1.48        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3BB 
       60.92        87.12        26.04        33.04        19.33        32.45 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN 
       16.31        14.83        22.19        24.13        25.05        14.99 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS 
       23.24        24.79        29.26        16.80        14.53        19.33 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX 
       11.44        13.71        17.42        18.67        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        1.68         0.03        20.19         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D 
        0.33         0.23         0.33         0.62         2.96         1.71 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF 
        7.36         7.46         0.16         0.33         6.44         5.65 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        7.17         6.90         0.33         0.36         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV 
        5.36         0.30         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03R 
        5.59        80.28        61.35        66.77        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J6 
       47.87        58.95        29.13        21.40        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JE 
       20.32        22.36        53.03        21.53        50.86        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 
       65.10        26.24        50.24        62.04        71.80        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      108.72       106.78        90.58        98.27        64.04        57.30 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR 
       41.62        40.57        14.73        82.62        61.87        70.39 
TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 
        0.53        17.79        24.79         5.65        15.62        32.52 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TR 
        2.56        32.91        19.20       140.55        98.33         5.26 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ 
       84.10       109.02        75.22        98.93        55.86       107.24 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AK 
      133.22        83.87       134.14       107.21       125.16       103.86 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS 
       97.68        98.33        96.00        86.07        93.90        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R 
       94.22       120.33        99.78       118.59         2.76       112.77 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27        77.69       105.30        32.58        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       89.00        85.64        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR 
       86.53        54.21        63.62        39.39        40.54        57.27 
TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       73.35        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
      281.29        12.13       275.87       129.57        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      146.50       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      129.07       140.88        68.45       212.25       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RT 
       78.02       263.28       162.05       140.48       100.70        89.46 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ 
       97.48       188.68        79.63        18.35       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.88        43.59 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       73.51       139.17       170.17        37.87         7.07        85.35 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
      103.63        71.15        62.93        20.45        25.55        63.09 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.55        39.16        70.22        81.63        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM 
       32.02        18.21        43.53        61.51        21.70        61.68 
TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       72.23        74.14        76.60        53.95        45.57        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       77.95        49.05        89.06        45.83        77.98        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP 
       38.01        29.98        13.91        78.28        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E1 
        3.22         2.56        38.47        67.86        16.27        15.68 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI 
        9.63        44.81        46.19        32.58        24.49        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        37.78        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO 
       23.08        52.96        26.50        20.38         5.85         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0RX 
       13.61        36.85        12.89        51.32        27.25         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1F0 
       51.39       113.82        82.85        42.28        49.58        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       31.53        89.16        24.62       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.89        36.92        63.35        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O 
      144.59        28.14        38.60        83.31       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 
        6.44        20.12        10.52       109.28        20.88         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M 
        5.26         9.70        21.76         9.44        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A138 
       12.66        48.53         3.16        12.59         4.11         4.08 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL 
       12.33        10.92        11.28         0.16        12.03        10.42 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z 
       12.33        12.95        20.25        12.53        12.36         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        9.67         9.53         0.03        14.43        33.99        12.95 
TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Z TCGA-D8-A140 
       13.02        12.49        13.41        19.46        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       20.58        13.48        21.14        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       16.50        55.50        15.78        18.90        12.03        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP 
       14.01        18.97        20.09        20.09        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD 
       25.74        23.90        27.58        18.15        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XR TCGA-D8-A1XS 
       15.22        14.73        19.92        17.69        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.64        12.99        15.16        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N 
       13.45        13.05        14.43        48.03        16.41         4.80 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
        1.61        10.09        12.26        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       16.18        12.66        25.22        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       46.59        40.41        37.51        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V 
       44.68        40.96        38.24        33.17        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 
       32.02        31.96        69.34        18.51        69.96        23.24 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        14.79        23.34        22.82        17.29 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
       20.58        11.05        50.79        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       51.39        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       16.47        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 
       28.44        59.18         3.88        22.19        11.08        54.18 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LL 
       73.64        19.66        24.59        75.81        28.90        43.04 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A576 TCGA-E9-A1N3 
       34.55        43.56         8.28        30.61        34.29        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        22.29        34.16        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ 
       41.62        35.77        35.24        25.84         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       28.27         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       45.01        32.09        40.24         1.12        46.65         6.58 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       39.09        38.37        41.03        40.73        40.50        20.12 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
        9.47        38.07        32.91        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        25.81        27.85        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 
       18.21        18.90        13.25        16.57        15.68        28.77 
TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        22.82        29.95        40.41        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB 
       52.96        23.11        18.48        30.08        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR 
        6.15        13.94        10.52        14.43        34.55        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        10.16 
TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GM-A2D9 TCGA-GM-A2DA 
       23.51        15.22        24.99        31.30        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DK 
       79.10        83.34        75.02        70.85        72.10        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3XG 
      115.69       106.06       101.62        85.35       110.50        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-JL-A3YX 
       66.38        72.03        13.55        18.12         2.60        11.57 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ 
       17.06        15.32        14.70        14.47        22.26         2.63 
TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 
       16.08        15.68        14.50        19.53        12.36        19.59 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       17.49        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       31.99        58.62        40.08        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66N 
       24.72        26.70        23.47        65.62        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       17.36        14.07        19.73        40.11         8.91        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF 
       64.21        86.96         0.16         0.26         9.93        18.81 
TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       18.48        21.07        20.68        13.84        18.87        17.39 
TCGA-S3-AA15 TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
       17.26        17.03        66.84        52.96        29.03        15.35 
TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       16.04       108.07       107.05 

  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                           0.33                            0.03 
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                         282.90                          281.29 
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                          26.99                           28.14 
[1] "0.3 - 282.9 (27.0)" "0.0 - 281.3 (28.1)"
[1] "hr=" "1.4"
D57V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 28(12Q24.31) MUTATED        16       13        0        2        68
  DEL PEAK 28(12Q24.31) WILD-TYPE      73       72        6        4       285
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 28(12Q24.31) MUTATED          57         0         26          6
  DEL PEAK 28(12Q24.31) WILD-TYPE       195         2        128         23
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 28(12Q24.31) MUTATED           16        4         0       2
  DEL PEAK 28(12Q24.31) WILD-TYPE         49       16         1      11
D57V3, multiclass
            clus
vv           DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  STAGE I                               16                              73
  STAGE IA                              13                              72
  STAGE IB                               0                               6
  STAGE II                               2                               4
  STAGE IIA                             68                             285
  STAGE IIB                             57                             195
  STAGE III                              0                               2
  STAGE IIIA                            26                             128
  STAGE IIIB                             6                              23
  STAGE IIIC                            16                              49
  STAGE IV                               4                              16
  STAGE TIS                              0                               1
  STAGE X                                2                              11
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  DEL PEAK 28(12Q24.31) MUTATED    40 135  25   9
  DEL PEAK 28(12Q24.31) WILD-TYPE 236 489 111  31
D57V4, multiclass
    clus
vv   DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  T1                            40                             236
  T2                           135                             489
  T3                            25                             111
  T4                             9                              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  DEL PEAK 28(12Q24.31) MUTATED   105  63  23  17
  DEL PEAK 28(12Q24.31) WILD-TYPE 402 295  96  60
D57V5, multiclass
    clus
vv   DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  N0                           105                             402
  N1                            63                             295
  N2                            23                              96
  N3                            17                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V6, binary
                                 cls
clus                                0   1
  DEL PEAK 28(12Q24.31) MUTATED   178   4
  DEL PEAK 28(12Q24.31) WILD-TYPE 711  18
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(12Q24.31) MUTATED    178    4
  DEL PEAK 28(12Q24.31) WILD-TYPE  711   18
   clus
vv  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  0                           178                             711
  1                             4                              18
[1] 2 2
[1] FALSE
D57V7, binary
                                 cls
clus                                0   1
  DEL PEAK 28(12Q24.31) MUTATED   210   1
  DEL PEAK 28(12Q24.31) WILD-TYPE 858  11
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(12Q24.31) MUTATED    210    1
  DEL PEAK 28(12Q24.31) WILD-TYPE  858   11
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  FEMALE                           210                             858
  MALE                               1                              11
[1] 2 2
[1] FALSE
D57V8, binary
                                 cls
clus                                0   1
  DEL PEAK 28(12Q24.31) MUTATED    82 102
  DEL PEAK 28(12Q24.31) WILD-TYPE 347 416
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(12Q24.31) MUTATED     82  102
  DEL PEAK 28(12Q24.31) WILD-TYPE  347  416
     clus
vv    DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  NO                             82                             347
  YES                           102                             416
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  DEL PEAK 28(12Q24.31) MUTATED                            0
  DEL PEAK 28(12Q24.31) WILD-TYPE                          1
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 28(12Q24.31) MUTATED                             161
  DEL PEAK 28(12Q24.31) WILD-TYPE                           609
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 28(12Q24.31) MUTATED                               30
  DEL PEAK 28(12Q24.31) WILD-TYPE                            170
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 28(12Q24.31) MUTATED                     3                     3
  DEL PEAK 28(12Q24.31) WILD-TYPE                   3                     6
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 28(12Q24.31) MUTATED                                  6
  DEL PEAK 28(12Q24.31) WILD-TYPE                               23
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 28(12Q24.31) MUTATED                    0              8
  DEL PEAK 28(12Q24.31) WILD-TYPE                 17             39
D57V9, multiclass
                                  clus
vv                                 DEL PEAK 28(12Q24.31) MUTATED
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              161
  INFILTRATING LOBULAR CARCINOMA                              30
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        3
  MIXED HISTOLOGY (PLEASE SPECIFY)                             6
  MUCINOUS CARCINOMA                                           0
  OTHER  SPECIFY                                               8
                                  clus
vv                                 DEL PEAK 28(12Q24.31) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     1
  INFILTRATING DUCTAL CARCINOMA                                609
  INFILTRATING LOBULAR CARCINOMA                               170
  MEDULLARY CARCINOMA                                            3
  METAPLASTIC CARCINOMA                                          6
  MIXED HISTOLOGY (PLEASE SPECIFY)                              23
  MUCINOUS CARCINOMA                                            17
  OTHER  SPECIFY                                                39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 28(12Q24.31) MUTATED                                  0    11
  DEL PEAK 28(12Q24.31) WILD-TYPE                                1    49
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 28(12Q24.31) MUTATED                          49   136
  DEL PEAK 28(12Q24.31) WILD-TYPE                       132   609
D57V11, multiclass
                                  clus
vv                                 DEL PEAK 28(12Q24.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       11
  BLACK OR AFRICAN AMERICAN                                   49
  WHITE                                                      136
                                  clus
vv                                 DEL PEAK 28(12Q24.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         49
  BLACK OR AFRICAN AMERICAN                                    132
  WHITE                                                        609
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V12, binary
                                 cls
clus                                0   1
  DEL PEAK 28(12Q24.31) MUTATED     6 176
  DEL PEAK 28(12Q24.31) WILD-TYPE  33 699
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(12Q24.31) MUTATED      6  176
  DEL PEAK 28(12Q24.31) WILD-TYPE   33  699
                        clus
vv                       DEL PEAK 28(12Q24.31) MUTATED
  HISPANIC OR LATINO                                 6
  NOT HISPANIC OR LATINO                           176
                        clus
vv                       DEL PEAK 28(12Q24.31) WILD-TYPE
  HISPANIC OR LATINO                                  33
  NOT HISPANIC OR LATINO                             699
[1] 2 2
[1] FALSE

Clustering(58) Variable = DEL PEAK 29(13Q14.2) MUTATION ANALYSIS
D58V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 29(13Q14.2) MUTATED   417  70
  DEL PEAK 29(13Q14.2) WILD-TYPE 500  77
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           487                            577 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                            70                             77 
$`DEL PEAK 29(13Q14.2) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SI TCGA-A1-A0SJ 
      129.14       131.67        14.37        43.43        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04Q 
       31.79        39.32        28.01        19.20        18.21        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04X TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CS 
      121.94        73.84        55.43        24.79       114.81        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 
       75.25         5.19        98.99       107.93        56.81        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0ER TCGA-A2-A0EU TCGA-A2-A0EV 
       34.55        25.22        80.28        74.40        34.29        31.82 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T4 TCGA-A2-A0YE TCGA-A2-A0YI TCGA-A2-A0YL 
       27.12        44.88        20.52        18.21        49.48        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A25E TCGA-A2-A3XT 
       31.73        23.77        23.47        17.36       105.34        91.07 
TCGA-A2-A3XU TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       29.98        56.28        47.31        50.83         7.30        24.39 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CJ TCGA-A7-A0DC 
       26.96        21.14        38.30        35.31        30.61        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26E TCGA-A7-A26G TCGA-A7-A26I 
       31.73        20.19        25.15        31.36        23.74        21.73 
TCGA-A7-A2KD TCGA-A7-A3IZ TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A6VV 
       22.32        10.59        14.93        14.50        17.92        10.29 
TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06R TCGA-A8-A06T 
        9.37        10.42         8.75        13.02        17.98        53.06 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 
       29.03        31.00        26.01         1.02        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       43.00        18.97        14.01        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08F 
        8.98         9.99        36.95        13.02        38.01        33.01 
TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A092 
       12.00         9.99        31.00        31.00        33.01        30.97 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
       41.98         9.99        12.00        45.07        29.98        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A9 
        1.02        25.02         0.99        14.01        19.04        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2QH 
       17.03        38.04        22.95        73.05        99.35        33.04 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A4ZE TCGA-AC-A62X 
       14.66        32.45        16.57        19.79        29.26        13.71 
TCGA-AC-A62Y TCGA-AC-A6IW TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AN-A03X 
       17.42        13.58         8.22         0.03        20.19         0.33 
TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL 
        0.33         2.96         1.78         1.71         9.96         7.46 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FS TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL 
        0.33         0.33         6.90         0.33         0.33         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33        12.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A0J3 
       80.28        66.77        81.63        68.75        47.87        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ 
       52.18        37.48        76.77        26.24        50.24        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12E 
       55.33        71.80       115.27       108.72       108.03        57.30 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT 
       48.36        41.62        61.87        70.39         0.53        17.79 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A54N TCGA-AQ-A54O 
       24.79        26.93       130.09        15.62         2.56        32.91 
TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TZ 
       19.20       140.55         5.26        75.22        64.83       107.24 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       107.21       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AR TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24K 
      101.00       103.86        17.23        86.53        33.73        50.89 
TCGA-AR-A24L TCGA-AR-A24N TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24V 
       94.22        99.78       104.28        97.84       105.27       105.30 
TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       32.58        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A2LK TCGA-AR-A5QM TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0IB 
       71.05        54.21        73.35        10.59        77.62       129.57 
TCGA-B6-A0IE TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RP 
       65.72       140.88       255.68        68.45        81.17       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RU TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      140.48       282.90        97.48        79.63        18.35        21.47 
TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       68.94        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A409 TCGA-BH-A0AV 
       37.87         7.07        85.35        68.12        18.84        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B4 TCGA-BH-A0B6 
       20.45        25.55        63.09        81.44        39.16        81.63 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BJ TCGA-BH-A0BL 
       84.13        51.68        37.22        32.02        21.70        74.89 
TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       75.48        76.60        49.94        77.95        49.05        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DL 
       44.02        90.97        45.83        38.01        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EE 
       15.65         3.22         4.41         9.63        46.19        31.00 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0HU TCGA-BH-A0HX 
       10.78        15.16        23.08        26.50        12.89        27.25 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18K TCGA-BH-A18L 
        5.59        23.93        44.81        23.05        90.84        26.66 
TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EU 
       55.63        66.05         7.36        51.39        67.50        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       12.00        55.69        17.69        97.48        24.62       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FN TCGA-BH-A1FU 
       33.17        74.73        36.92        63.35        72.07        72.07 
TCGA-BH-A202 TCGA-BH-A209 TCGA-BH-A28Q TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 
       26.14       130.16         6.44        18.64        23.51         9.63 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12U 
        9.70        18.87        11.77        12.66        11.77        12.66 
TCGA-C8-A12Y TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       48.53        12.92         4.08        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26X 
        0.16        12.03        12.95        12.33        20.25        12.36 
TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M8 TCGA-C8-A8HR 
       12.95         9.53         9.50        14.43        12.95        13.41 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       56.81        20.88        13.25        13.97        14.17        13.48 
TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JC 
       21.14        19.20        14.17        17.49        16.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JL 
       18.15        18.90        53.00        18.97        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1JT TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X9 
       19.40        21.01        13.32        18.58        17.79        23.90 
TCGA-D8-A1XA TCGA-D8-A1XD TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XR TCGA-D8-A1XU 
       27.58        17.16        14.50        19.92        15.85        12.99 
TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27F 
       16.54        15.52         9.93        14.24        14.14        16.04 
TCGA-D8-A27I TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-E2-A107 
       14.43         4.80        10.09        13.08        12.53        34.42 
TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14T TCGA-E2-A14V 
       46.59        40.11        47.15        44.68        75.98        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A155 TCGA-E2-A156 
       32.02        31.96        63.62        69.96        21.04        23.87 
TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15G TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P 
       14.79        25.05        18.21        11.05        50.79        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1II 
       56.94        14.07        76.57        77.65        70.36        33.70 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LG 
        3.88        22.19        60.99        73.64        24.59        50.07 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A56Z TCGA-E2-A576 TCGA-E9-A1N6 
        8.75        43.04        26.99         8.28        34.29        22.29 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NE TCGA-E9-A1NH TCGA-E9-A1NI 
       34.16        36.20        36.56        35.77        18.94         9.86 
TCGA-E9-A1R2 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       34.95        11.15        45.01        32.09        40.24         1.12 
TCGA-E9-A1RG TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A247 
       21.27        41.03        41.72        40.73        40.50        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A54Y 
        1.94         7.13        12.33        38.07        30.18        23.84 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1OV TCGA-EW-A1OW 
       25.81        26.40        27.85        12.20        25.94        22.82 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P7 TCGA-EW-A1P8 
       29.85        40.41        52.96        23.11        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A3U0 
       18.90         6.15        14.43        19.96        52.73        17.49 
TCGA-EW-A6S9 TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DL 
       15.22        79.10        83.34        75.02        70.85       115.69 
TCGA-GM-A3NW TCGA-GM-A3XL TCGA-GM-A5PX TCGA-HN-A2NL TCGA-LD-A66U TCGA-LD-A74U 
      110.50        69.30        18.12         2.60        21.24        13.22 
TCGA-LD-A7W5 TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP 
        7.10        15.32        14.70        14.47        14.79        22.26 
TCGA-LL-A6FR TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OL-A5D7 
       16.08        19.53        12.36        27.91        22.39        58.52 
TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K 
       58.62        36.36        22.32        20.38        23.47        41.92 
TCGA-OL-A66N TCGA-OL-A66O TCGA-PE-A5DC TCGA-PE-A5DD TCGA-S3-A6ZG TCGA-S3-A6ZH 
       26.04        17.36        47.01        64.21        18.48        21.07 
TCGA-S3-AA10 TCGA-S3-AA14 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-XX-A89A 
       19.27        17.39        13.94        17.03        66.84        16.04 
TCGA-Z7-A8R5 
      108.07 

$`DEL PEAK 29(13Q14.2) WILD-TYPE`
TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
       42.81        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SM TCGA-A2-A04N 
        8.52        48.10        14.27        47.24         7.96       143.15 
TCGA-A2-A04P TCGA-A2-A04U TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y TCGA-A2-A0CK 
       18.02        87.25        63.12       101.98        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0D2 TCGA-A2-A0D3 
       99.12        92.48        88.60       107.93        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ES TCGA-A2-A0ET 
      101.72        89.36       118.45        79.76        72.00        35.05 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SX 
       61.94        24.72        63.29        99.19        54.64        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 
       44.28        17.52        17.13         8.38        49.84        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       21.67        18.61        19.33        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       19.20        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       17.19        18.15        10.59        36.23        39.65        33.93 
TCGA-A2-A3XV TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S3 
       32.75        35.93        50.37        21.30        23.21        21.90 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13G 
       34.29        35.47        37.45        35.67        33.11        23.61 
TCGA-A7-A13H TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3J0 
       29.56        24.26        23.80        20.61        11.34        10.29 
TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SB TCGA-A7-A4SE 
       11.28        13.41        14.70        11.97        13.74        21.17 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        11.05        13.02         1.02 
TCGA-A8-A075 TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07S TCGA-A8-A07U 
       17.03        19.99        18.97        12.00         7.99        24.99 
TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08J 
       45.07        15.06         0.99        28.96        19.96        37.05 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 
        0.99       112.08        43.00        40.01        33.01        17.95 
TCGA-A8-A097 TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09R 
       12.00         9.99         1.02        50.04        49.05         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       19.04        15.02        12.00        13.02        21.04         0.99 
TCGA-AC-A23C TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FE 
        0.95        73.91         5.72         1.48        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI 
       90.71        60.92        87.12        26.04        74.14        19.33 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM 
        6.48        16.31        14.83        22.19        24.13        25.05 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5EI 
       14.99        15.48        23.24        24.79        16.80        14.53 
TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A6IV TCGA-AC-A6IX TCGA-AC-A6NO 
       19.33        14.96        11.44        18.67        12.26         1.68 
TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 
        1.12         1.32         2.30         0.33         0.23         0.62 
TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        7.36         0.16         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        7.00         7.59         7.17         7.04         0.33         0.36 
TCGA-AN-A0FZ TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AO-A03M TCGA-AO-A03P 
        0.33         0.30         0.33         0.33        61.35        95.70 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 
       58.95        29.13        32.78        26.04        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JF 
       53.03        21.53        50.70        50.86        72.00        65.10 
TCGA-AO-A125 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12H 
       99.25       106.78        90.58        98.27        64.04        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AR-A0TQ TCGA-AR-A0TS 
       14.73        82.62         5.65        32.52        98.33        84.10 
TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0U3 TCGA-AR-A1AL TCGA-AR-A1AM 
      109.02        98.93        55.86       134.14        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AU 
       96.00        86.07        93.90        99.32        37.81        94.29 
TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P 
       61.28        86.43       160.90       120.33       118.59         2.76 
TCGA-AR-A24R TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
      112.77        77.69        98.76        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        66.15        63.62        38.17        39.39        40.54 
TCGA-AR-A2LR TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 
       57.27        33.30        38.96       143.38       281.29        12.13 
TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
      275.87        50.70       146.50       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RH TCGA-B6-A0RI 
      127.33        84.59       165.76       129.07       212.25       234.28 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RV 
       78.02       263.28       162.05       100.70        89.46       157.41 
TCGA-B6-A0WT TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
      188.68       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X7 TCGA-B6-A402 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0B2 
       58.88        70.16       103.63        71.15        62.93        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BM 
       39.55        70.22        18.21        43.53        61.51        61.68 
TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0C3 TCGA-BH-A0DE 
       72.23        74.14        53.95        45.57        89.06        77.98 
TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DO TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       23.44        29.98        17.26         2.56        38.47        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0EA 
       70.88        16.27        15.68        14.30        44.81        32.58 
TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       24.49        24.43        30.35        37.78        53.26        24.56 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       41.00        52.96        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0HY TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A18F 
       36.85        51.32        50.79        24.95        42.35        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
        4.90        35.93        20.12        72.56        37.74        30.28 
TCGA-BH-A18R TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EX 
       37.55        51.16        91.99       113.82        82.85        49.58 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FG TCGA-BH-A1FL 
       25.81        31.53        89.16       120.62       122.89        55.00 
TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       45.63       144.59        28.14        38.60        83.31        57.83 
TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R9 
       10.65        20.12        10.52       109.28        20.88         5.26 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12Q TCGA-C8-A12V 
       21.76         9.44        11.93        11.77        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        12.66        12.56         3.16        13.51         1.87 
TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A26W 
       12.59         4.11        12.33        10.42        12.33        12.53 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A8HP 
        8.28         9.67         0.03        24.56        33.99        13.02 
TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A141 TCGA-D8-A1JB TCGA-D8-A1JF TCGA-D8-A1JH 
       12.49        19.46        20.58        55.50        12.03        14.01 
TCGA-D8-A1JJ TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X7 TCGA-D8-A1X8 
       20.09        20.38        12.20        14.70        16.73        25.74 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XM 
       18.15        12.39        15.22        14.73        21.80        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW 
       55.30        16.41        16.31        16.64        15.16        43.04 
TCGA-D8-A1XZ TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27L 
       15.32        17.42        13.45        13.05        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27P TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.48         1.61        12.26        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10A 
       16.18        12.66        25.22        43.00        27.52        40.41 
TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       37.51        28.44        28.87        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A154 
       33.17        43.33        69.34        18.51        23.24        19.43 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H 
       23.34        22.82        17.29        20.71        21.63        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15T TCGA-E2-A1B0 
       55.63        53.92         9.04        20.58        51.39        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD 
       87.22        33.01        32.35        28.50        16.47        37.25 
TCGA-E2-A1IF TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IU TCGA-E2-A1L6 
       37.41        33.73        28.44        59.18        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       60.36        19.66        75.81        28.90       106.75       102.61 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU 
       34.55        43.56        30.61        34.92        38.76        17.69 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF 
       34.82        32.88        36.82        39.55        41.62        35.24 
TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       25.84        24.82        28.27         2.56         6.12         3.02 
TCGA-E9-A1R7 TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       48.23        46.65         6.58        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A243 
       32.05        42.25        37.74        39.09        38.37        20.12 
TCGA-E9-A244 TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 
        0.69        24.56        29.72         9.47        32.91        30.44 
TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       23.90        26.70         0.79        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OX 
       18.90        13.25        16.57        15.68        28.77        29.95 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1PB TCGA-EW-A1PD 
       41.13        39.78        29.82        18.48        19.99        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       10.52        34.55        55.00        25.91        22.09        34.03 
TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD 
       10.16        23.51        16.77        24.99        31.30        33.21 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DH TCGA-GM-A2DI 
        7.40       109.87        59.57       216.76        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NY TCGA-GM-A3XG 
       86.96       106.06       101.62        85.35        38.20        43.73 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       66.38        72.03        13.55        62.47        11.84        11.57 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 
       17.06         2.63        15.68         7.46        14.50        19.59 
TCGA-LL-A9Q3 TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5RU TCGA-OL-A5RV 
       17.49         2.10        36.30        31.99        40.08        34.92 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66P 
       28.87        24.72        26.70        65.62        42.77        14.07 
TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DE TCGA-PL-A8LX 
       28.21        19.73        40.11         8.91        86.96         0.16 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 
        0.26         9.93        18.81        20.68        13.84        18.87 
TCGA-S3-AA15 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A899 
       17.26         3.81        11.41        52.96        29.03        15.35 
TCGA-Z7-A8R6 
      107.05 

  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                        282.90                         281.29 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                         26.66                          28.87 
[1] "0.0 - 282.9 (26.7)" "0.0 - 281.3 (28.9)"
[1] "hr=" "1.2"
D58V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 29(13Q14.2) MUTATED        37       34        1        1       174
  DEL PEAK 29(13Q14.2) WILD-TYPE      52       51        5        5       179
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 29(13Q14.2) MUTATED         115         1         74         14
  DEL PEAK 29(13Q14.2) WILD-TYPE       137         1         80         15
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 29(13Q14.2) MUTATED           26        8         1       5
  DEL PEAK 29(13Q14.2) WILD-TYPE         39       12         0       8
D58V3, multiclass
            clus
vv           DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  STAGE I                              37                             52
  STAGE IA                             34                             51
  STAGE IB                              1                              5
  STAGE II                              1                              5
  STAGE IIA                           174                            179
  STAGE IIB                           115                            137
  STAGE III                             1                              1
  STAGE IIIA                           74                             80
  STAGE IIIB                           14                             15
  STAGE IIIC                           26                             39
  STAGE IV                              8                             12
  STAGE TIS                             1                              0
  STAGE X                               5                              8
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 29(13Q14.2) MUTATED   109 304  61  18
  DEL PEAK 29(13Q14.2) WILD-TYPE 167 320  75  22
D58V4, multiclass
    clus
vv   DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  T1                          109                            167
  T2                          304                            320
  T3                           61                             75
  T4                           18                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 29(13Q14.2) MUTATED   237 155  63  32
  DEL PEAK 29(13Q14.2) WILD-TYPE 270 203  56  45
D58V5, multiclass
    clus
vv   DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  N0                          237                            270
  N1                          155                            203
  N2                           63                             56
  N3                           32                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V6, binary
                                cls
clus                               0   1
  DEL PEAK 29(13Q14.2) MUTATED   415   9
  DEL PEAK 29(13Q14.2) WILD-TYPE 474  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(13Q14.2) MUTATED    415    9
  DEL PEAK 29(13Q14.2) WILD-TYPE  474   13
   clus
vv  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  0                          415                            474
  1                            9                             13
[1] 2 2
[1] FALSE
D58V7, binary
                                cls
clus                               0   1
  DEL PEAK 29(13Q14.2) MUTATED   489   6
  DEL PEAK 29(13Q14.2) WILD-TYPE 579   6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(13Q14.2) MUTATED    489    6
  DEL PEAK 29(13Q14.2) WILD-TYPE  579    6
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  FEMALE                          489                            579
  MALE                              6                              6
[1] 2 2
[1] FALSE
D58V8, binary
                                cls
clus                               0   1
  DEL PEAK 29(13Q14.2) MUTATED   183 247
  DEL PEAK 29(13Q14.2) WILD-TYPE 246 271
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(13Q14.2) MUTATED    183  247
  DEL PEAK 29(13Q14.2) WILD-TYPE  246  271
     clus
vv    DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  NO                           183                            246
  YES                          247                            271
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 29(13Q14.2) MUTATED                            0
  DEL PEAK 29(13Q14.2) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 29(13Q14.2) MUTATED                             389
  DEL PEAK 29(13Q14.2) WILD-TYPE                           381
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 29(13Q14.2) MUTATED                               67
  DEL PEAK 29(13Q14.2) WILD-TYPE                            133
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 29(13Q14.2) MUTATED                     5                     5
  DEL PEAK 29(13Q14.2) WILD-TYPE                   1                     4
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 29(13Q14.2) MUTATED                                 13
  DEL PEAK 29(13Q14.2) WILD-TYPE                               16
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 29(13Q14.2) MUTATED                    2             13
  DEL PEAK 29(13Q14.2) WILD-TYPE                 15             34
D58V9, multiclass
                                  clus
vv                                 DEL PEAK 29(13Q14.2) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             389
  INFILTRATING LOBULAR CARCINOMA                             67
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       5
  MIXED HISTOLOGY (PLEASE SPECIFY)                           13
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                             13
                                  clus
vv                                 DEL PEAK 29(13Q14.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               381
  INFILTRATING LOBULAR CARCINOMA                              133
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         4
  MIXED HISTOLOGY (PLEASE SPECIFY)                             16
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 29(13Q14.2) MUTATED                                  0    28
  DEL PEAK 29(13Q14.2) WILD-TYPE                                1    32
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 29(13Q14.2) MUTATED                          95   320
  DEL PEAK 29(13Q14.2) WILD-TYPE                        86   425
D58V11, multiclass
                                  clus
vv                                 DEL PEAK 29(13Q14.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      28
  BLACK OR AFRICAN AMERICAN                                  95
  WHITE                                                     320
                                  clus
vv                                 DEL PEAK 29(13Q14.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        32
  BLACK OR AFRICAN AMERICAN                                    86
  WHITE                                                       425
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V12, binary
                                cls
clus                               0   1
  DEL PEAK 29(13Q14.2) MUTATED    12 393
  DEL PEAK 29(13Q14.2) WILD-TYPE  27 482
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(13Q14.2) MUTATED     12  393
  DEL PEAK 29(13Q14.2) WILD-TYPE   27  482
                        clus
vv                       DEL PEAK 29(13Q14.2) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          393
                        clus
vv                       DEL PEAK 29(13Q14.2) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            482
[1] 2 2
[1] FALSE

Clustering(59) Variable = DEL PEAK 30(14Q24.1) MUTATION ANALYSIS
D59V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 30(14Q24.1) MUTATED   289  60
  DEL PEAK 30(14Q24.1) WILD-TYPE 628  87
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           349                            715 
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                            60                             87 
$`DEL PEAK 30(14Q24.1) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04P 
      129.14        42.81        31.79        28.01        19.20        18.02 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CM TCGA-A2-A0CU TCGA-A2-A0CW 
       73.84        87.25       101.98        24.79         5.19       107.93 
TCGA-A2-A0D0 TCGA-A2-A0D4 TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EY 
       67.33        25.22        79.76        35.05        34.29        63.29 
TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0YE TCGA-A2-A0YJ TCGA-A2-A0YT 
       27.12        50.43        17.52        18.21        18.61        23.77 
TCGA-A2-A1FV TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A25E TCGA-A2-A3XS TCGA-A2-A3XT 
       23.47        19.20        42.44       105.34        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A7-A0CE TCGA-A7-A0DA 
       29.98        56.28        47.31        50.83        35.31        35.67 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A2KD 
       31.73        20.19        25.15        23.74        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A5ZV TCGA-A7-A6VW 
       11.28        13.74        14.50        21.17        12.10         9.37 
TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       10.42         8.75         1.02        53.06        29.03        31.00 
TCGA-A8-A06Z TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07R 
        1.02        18.97        18.97        32.05         9.99         8.98 
TCGA-A8-A07W TCGA-A8-A085 TCGA-A8-A08G TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
        9.99        36.95        19.96         9.99        31.00        31.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
        9.99         9.99        50.04        45.07        29.98        33.07 
TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A0A6 TCGA-A8-A0AB TCGA-AC-A23C TCGA-AC-A2BK 
        1.02         8.98        21.04        17.03         0.95        73.05 
TCGA-AC-A2BM TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3EH TCGA-AC-A3W5 TCGA-AC-A62X 
       99.35        33.04        14.66         6.48        16.57        13.71 
TCGA-AC-A6IW TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AN-A04C TCGA-AN-A04D 
       13.58         8.22         0.03         1.12         1.78         1.71 
TCGA-AN-A0AK TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FT TCGA-AN-A0FX 
        7.36         0.33         6.44         7.96         7.04         0.33 
TCGA-AN-A0XN TCGA-AN-A0XT TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A0J2 
        0.33         0.33        66.77        95.70        47.87        32.78 
TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12F 
       52.18        37.48        55.33       115.27       108.03        48.36 
TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 
       61.87        70.39        24.79        26.93       130.09         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TT 
        2.56        32.91        19.20       140.55         5.26       109.02 
TCGA-AR-A0TV TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI 
       75.22        65.36       133.22       107.21       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AU 
      101.00        97.68        98.33        93.90        99.32        94.29 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24Q 
       86.43        33.73       160.90        50.89        94.22       104.28 
TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A256 
      105.30        98.66        89.00        99.62        71.05        93.83 
TCGA-B6-A0I1 TCGA-B6-A0I9 TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN 
       77.62        12.13       112.37       233.62       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RL TCGA-B6-A0WS TCGA-B6-A0WW 
      165.76       140.88       255.68        81.17        97.48        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       21.47       113.79        43.59       101.52        73.51       139.17 
TCGA-B6-A3ZX TCGA-B6-A409 TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AZ 
       37.87        18.84        62.93        59.84        20.45        63.09 
TCGA-BH-A0B3 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0BG 
       39.55        70.22        84.13        51.68        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BW TCGA-BH-A0BZ 
       21.70        74.89        75.48        76.60        77.95        49.05 
TCGA-BH-A0C1 TCGA-BH-A0C7 TCGA-BH-A0DE TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E6 
       44.02        90.97        77.98         4.41        14.30         9.63 
TCGA-BH-A0H7 TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18Q 
       23.08        27.25         5.59        23.05        32.91        55.63 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EW TCGA-BH-A1EY 
        7.36        51.39        51.16        67.50        55.69        17.69 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FM 
       97.48        24.62       114.15        33.17        74.73        45.63 
TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-C8-A12L TCGA-C8-A12M 
       26.14        83.31        10.52        18.64        11.93        11.77 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A1HF TCGA-C8-A1HG 
       12.66        12.66         1.87        12.59        10.92        11.34 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26Y TCGA-C8-A27B 
       12.03        12.33        12.95        20.25        12.95        14.43 
TCGA-C8-A8HP TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A147 
       13.02        19.46        56.81        20.88        13.97        19.20 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JG TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JP 
       55.50        15.78        53.00        20.09        19.40        21.01 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XL 
       27.58        18.15        15.22        14.73        14.50        19.92 
TCGA-D8-A1XO TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       55.30        16.64        12.99        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27I TCGA-D8-A27M TCGA-D8-A27R 
       15.52        14.14        16.04        14.43        13.48        10.09 
TCGA-D8-A27T TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10F TCGA-E2-A14R TCGA-E2-A14T 
       13.08        27.52        40.41        28.87        38.60        75.98 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A155 TCGA-E2-A158 
       34.26        32.02        18.51        63.62        21.04        14.79 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15F TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A1AZ 
       25.05        23.34        21.63        11.05        19.56        76.57 
TCGA-E2-A1IE TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1L7 TCGA-E2-A1LA TCGA-E2-A1LE 
       77.65        33.73        33.70        60.36        24.59        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU 
      106.75       102.61         8.28        34.92        38.76        17.69 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R4 
       22.29        34.16        36.20        24.82        34.95         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A226 TCGA-E9-A22A 
        3.02        11.15        48.23        32.09        34.45        39.09 
TCGA-E9-A22B TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A2JS TCGA-E9-A3HO 
       38.37        41.72        40.73         0.69        29.72        38.07 
TCGA-E9-A3QA TCGA-EW-A1IZ TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1P4 
       30.18        18.21        28.77        25.94        22.82        29.82 
TCGA-EW-A1P8 TCGA-EW-A1PF TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
        7.86        14.43        19.96        55.00        52.73        25.91 
TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD 
       10.16        23.51        16.77        24.99        31.30        33.21 
TCGA-GI-A2C9 TCGA-GM-A2DC TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A3XL TCGA-GM-A5PX 
      109.87        83.34        72.10        86.96        69.30        18.12 
TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LD-A7W5 TCGA-LL-A441 TCGA-LL-A5YP TCGA-LL-A7T0 
        2.60        11.57         7.10        32.75        14.79        12.36 
TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K 
       19.59        58.52        22.32        20.38        23.47        41.92 
TCGA-OL-A66N TCGA-OL-A6VO TCGA-OL-A6VR TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-AA0Z 
       26.04        28.21        40.11         0.16        18.81        20.68 
TCGA-S3-AA10 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB41 TCGA-XX-A899 
       19.27        13.94        17.03         3.81        52.96        15.35 
TCGA-XX-A89A 
       16.04 

$`DEL PEAK 30(14Q24.1) WILD-TYPE`
TCGA-3C-AALI TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      131.67        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       20.88        13.68         7.96        39.32        18.21       143.15 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK 
       78.41       121.94        63.12        55.43        36.13       136.73 
TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12       114.81        92.48        88.60       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       75.25        98.99        56.81        34.55        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72        89.36        80.28       118.45        74.40        72.00 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW 
       31.82        61.94        24.72        99.19        54.64        44.88 
TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FW 
       21.67        49.48        19.33        48.46        31.73        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
      107.70        17.19        18.15        10.59        36.23        39.65 
TCGA-A2-A3XV TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       32.75        35.93        50.37         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13G 
       35.47        30.61        37.45        33.11        29.79        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY 
       29.56        31.36        24.26        23.80        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.59        10.29        13.41        14.70        11.97        14.93 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A8-A06O 
       17.92        14.73        10.72        11.05        10.29        13.02 
TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       13.02        17.98        26.01        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07P TCGA-A8-A07S 
       43.00        19.99        14.01        12.00        10.98         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       24.99        45.07        15.06        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A08S 
       28.96        33.01        12.00        37.05         0.99        33.01 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
      112.08        43.00        40.01        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09Q 
       41.98        12.00        12.00         1.02        49.05        25.02 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G 
       13.02         0.99        27.02        38.04        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
        5.72         1.48        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A3BB TCGA-AC-A3HN 
       87.12        26.04        74.14        19.33        32.45        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W6 
       14.83        22.19        24.13        25.05        14.99        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI 
       15.48        23.24        24.79        29.26        16.80        14.53 
TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX 
       19.33        14.96        11.44        17.42        18.67        12.26 
TCGA-AC-A6NO TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
        1.68        20.19         1.32         2.30         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A0AJ TCGA-AN-A0AL 
        0.23         0.33         0.62         2.96         9.96         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL 
        0.16         0.33         0.33         5.65         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.17         6.90         0.33         0.36         0.33         0.33 
TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XU 
        5.36        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03R 
        5.33         5.59        80.28        61.35        81.63        68.75 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 
       58.95        29.13        21.40        26.04        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       53.03        21.53        50.70        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 
       65.10        26.24        50.24        62.04        71.80        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      108.72       106.78        90.58        98.27        64.04        57.30 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KS TCGA-AO-A1KT 
       41.62        40.57        14.73        82.62         0.53        17.79 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TQ TCGA-AR-A0TS TCGA-AR-A0TW TCGA-AR-A0TX 
       15.62        32.52        98.33        84.10        98.93        64.83 
TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AK TCGA-AR-A1AN 
       55.86       107.24        83.87       134.14       103.86        96.00 
TCGA-AR-A1AO TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A24M 
       86.07        17.23        37.81        61.28        86.53       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
       99.78       118.59         2.76       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE 
       77.69        32.58        98.76        93.30        85.64       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
       20.25        86.53        54.21        66.15        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP 
       39.39        40.54        57.27        73.35        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
       10.59       143.38       281.29       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IK TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RH 
       65.72       146.50        18.77       129.07        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      234.28        78.02       263.28       162.05       102.77       140.48 
TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WT TCGA-B6-A0WV 
      100.70        89.46       282.90       157.41       188.68        79.63 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.88 
TCGA-B6-A2IU TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B 
      170.17         7.07        85.35        70.16        68.12       103.63 
TCGA-B6-A40C TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B6 
       71.15        25.55        81.44        40.83        39.16        81.63 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ 
       37.22        32.02        18.21        61.68        72.23        74.14 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0DD 
       53.95        45.57        49.94        41.75        89.06        45.83 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       23.44        38.01        29.98        13.91        78.28        17.26 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        38.47        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB 
       16.27        15.68        44.81        46.19        32.58        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       53.26        24.56        41.00        52.96        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18G 
       50.79        23.93        24.95        42.35        44.81         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       30.28        37.55        66.05        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 
       42.28        12.00        49.58        25.81        31.53        89.16 
TCGA-BH-A1FB TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN 
      120.62       122.89        36.92        63.35        55.00        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 
      144.59        72.07        28.14        38.60        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 
       10.65         6.44        20.12       109.28        20.88        23.51 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
        9.63         5.26         9.70        18.87        21.76         9.44 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A135 TCGA-C8-A137 
       48.53        12.56         3.16        13.51        12.92         4.11 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL TCGA-C8-A1HO 
        4.08        12.33        11.28         0.16        10.42        12.33 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.53        12.36         8.28         9.67         9.53         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-C8-A8HR 
        9.50        24.56        33.99        12.95        12.49        13.41 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 
       13.25        20.58        14.17        13.48        21.14        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JH 
       17.49        16.50        18.15        18.90        12.03        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT 
       18.97        20.09        20.12        20.38        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XJ TCGA-D8-A1XM TCGA-D8-A1XQ TCGA-D8-A1XR 
       12.39        17.16        21.80        17.69        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XV TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G 
       16.31        15.16         9.93        14.24        17.42        13.45 
TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27V 
       13.05        48.03        16.41         4.80         1.61        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W 
       12.26        33.37        18.51        21.67        16.18        12.66 
TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A10C 
       25.22        43.00        34.42        46.59        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14S 
       28.44        47.15        44.68        40.96        38.24        33.17 
TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       43.33        31.96        69.34        69.96        23.24        19.43 
TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H 
       23.87        22.82        17.29        20.71        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15R 
       55.63        53.92         9.04        20.58        50.79        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       14.07        51.39        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ 
       28.50        16.47        37.25        37.41        70.36        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       59.18         3.88        22.19        60.99        11.08        54.18 
TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LG TCGA-E2-A1LK TCGA-E2-A1LL 
       73.64        19.66        75.81        50.07         8.75        43.04 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A576 TCGA-E9-A1N3 
       26.99        34.55        43.56        30.61        34.29        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       32.88        36.82        36.56        39.55        41.62        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1R0 TCGA-E9-A1R3 
       35.24        25.84        18.94         9.86        28.27         2.56 
TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       45.01        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22D 
       46.59        47.64        32.05        42.25        37.74        41.03 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       40.50        20.12        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       12.33         9.47        32.91        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW 
       26.70         0.79        25.81        26.40        27.85        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 
       39.72         8.48        18.90        13.25        16.57        15.68 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 
       29.95        29.85        40.41        41.13        39.78        52.96 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       23.11        18.48        30.08        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       13.94        10.52        34.55        22.09        34.03        17.49 
TCGA-EW-A6S9 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DD 
       15.22         7.40        59.57       216.76        79.10        75.02 
TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       70.85        85.15       115.69       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
      110.50        38.20        43.73        66.38        72.03        13.55 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF 
       62.47        11.84        21.24        13.22        13.28        10.62 
TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       24.95        29.23        25.05        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z 
       14.47        22.26         2.63        16.08        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       14.50        19.53        17.49        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66L TCGA-OL-A66O 
       28.87        24.72        26.70        65.62        42.77        17.36 
TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       14.07        19.73         8.91        47.01        64.21        86.96 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA12 
        0.26         9.93        18.48        21.07        13.84        18.87 
TCGA-S3-AA14 TCGA-S3-AA15 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB44 TCGA-Z7-A8R5 
       17.39        17.26        66.84        11.41        29.03       108.07 
TCGA-Z7-A8R6 
      107.05 

  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                        255.68                         282.90 
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                         28.21                          27.02 
[1] "0.0 - 255.7 (28.2)" "0.0 - 282.9 (27.0)"
[1] "hr=" "1.4"
D59V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 30(14Q24.1) MUTATED        22       23        0        3       119
  DEL PEAK 30(14Q24.1) WILD-TYPE      67       62        6        3       234
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 30(14Q24.1) MUTATED          91         0         52          7
  DEL PEAK 30(14Q24.1) WILD-TYPE       161         2        102         22
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 30(14Q24.1) MUTATED           18        8         0       7
  DEL PEAK 30(14Q24.1) WILD-TYPE         47       12         1       6
D59V3, multiclass
            clus
vv           DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  STAGE I                              22                             67
  STAGE IA                             23                             62
  STAGE IB                              0                              6
  STAGE II                              3                              3
  STAGE IIA                           119                            234
  STAGE IIB                            91                            161
  STAGE III                             0                              2
  STAGE IIIA                           52                            102
  STAGE IIIB                            7                             22
  STAGE IIIC                           18                             47
  STAGE IV                              8                             12
  STAGE TIS                             0                              1
  STAGE X                               7                              6
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 30(14Q24.1) MUTATED    66 237  37  11
  DEL PEAK 30(14Q24.1) WILD-TYPE 210 387  99  29
D59V4, multiclass
    clus
vv   DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  T1                           66                            210
  T2                          237                            387
  T3                           37                             99
  T4                           11                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 30(14Q24.1) MUTATED   169 111  45  21
  DEL PEAK 30(14Q24.1) WILD-TYPE 338 247  74  56
D59V5, multiclass
    clus
vv   DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  N0                          169                            338
  N1                          111                            247
  N2                           45                             74
  N3                           21                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V6, binary
                                cls
clus                               0   1
  DEL PEAK 30(14Q24.1) MUTATED   288   8
  DEL PEAK 30(14Q24.1) WILD-TYPE 601  14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(14Q24.1) MUTATED    288    8
  DEL PEAK 30(14Q24.1) WILD-TYPE  601   14
   clus
vv  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  0                          288                            601
  1                            8                             14
[1] 2 2
[1] FALSE
D59V7, binary
                                cls
clus                               0   1
  DEL PEAK 30(14Q24.1) MUTATED   348   5
  DEL PEAK 30(14Q24.1) WILD-TYPE 720   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(14Q24.1) MUTATED    348    5
  DEL PEAK 30(14Q24.1) WILD-TYPE  720    7
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  FEMALE                          348                            720
  MALE                              5                              7
[1] 2 2
[1] FALSE
D59V8, binary
                                cls
clus                               0   1
  DEL PEAK 30(14Q24.1) MUTATED   133 184
  DEL PEAK 30(14Q24.1) WILD-TYPE 296 334
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(14Q24.1) MUTATED    133  184
  DEL PEAK 30(14Q24.1) WILD-TYPE  296  334
     clus
vv    DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  NO                           133                            296
  YES                          184                            334
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 30(14Q24.1) MUTATED                            1
  DEL PEAK 30(14Q24.1) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 30(14Q24.1) MUTATED                             296
  DEL PEAK 30(14Q24.1) WILD-TYPE                           474
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 30(14Q24.1) MUTATED                               34
  DEL PEAK 30(14Q24.1) WILD-TYPE                            166
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 30(14Q24.1) MUTATED                     4                     4
  DEL PEAK 30(14Q24.1) WILD-TYPE                   2                     5
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 30(14Q24.1) MUTATED                                  4
  DEL PEAK 30(14Q24.1) WILD-TYPE                               25
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 30(14Q24.1) MUTATED                    1              8
  DEL PEAK 30(14Q24.1) WILD-TYPE                 16             39
D59V9, multiclass
                                  clus
vv                                 DEL PEAK 30(14Q24.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             296
  INFILTRATING LOBULAR CARCINOMA                             34
  MEDULLARY CARCINOMA                                         4
  METAPLASTIC CARCINOMA                                       4
  MIXED HISTOLOGY (PLEASE SPECIFY)                            4
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                              8
                                  clus
vv                                 DEL PEAK 30(14Q24.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               474
  INFILTRATING LOBULAR CARCINOMA                              166
  MEDULLARY CARCINOMA                                           2
  METAPLASTIC CARCINOMA                                         5
  MIXED HISTOLOGY (PLEASE SPECIFY)                             25
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 30(14Q24.1) MUTATED                                  0    18
  DEL PEAK 30(14Q24.1) WILD-TYPE                                1    42
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 30(14Q24.1) MUTATED                          83   220
  DEL PEAK 30(14Q24.1) WILD-TYPE                        98   525
D59V11, multiclass
                                  clus
vv                                 DEL PEAK 30(14Q24.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      18
  BLACK OR AFRICAN AMERICAN                                  83
  WHITE                                                     220
                                  clus
vv                                 DEL PEAK 30(14Q24.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        42
  BLACK OR AFRICAN AMERICAN                                    98
  WHITE                                                       525
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V12, binary
                                cls
clus                               0   1
  DEL PEAK 30(14Q24.1) MUTATED    12 287
  DEL PEAK 30(14Q24.1) WILD-TYPE  27 588
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(14Q24.1) MUTATED     12  287
  DEL PEAK 30(14Q24.1) WILD-TYPE   27  588
                        clus
vv                       DEL PEAK 30(14Q24.1) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          287
                        clus
vv                       DEL PEAK 30(14Q24.1) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            588
[1] 2 2
[1] FALSE

Clustering(60) Variable = DEL PEAK 31(15Q13.1) MUTATION ANALYSIS
D60V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 31(15Q13.1) MUTATED   316  55
  DEL PEAK 31(15Q13.1) WILD-TYPE 601  92
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                           371                            693 
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                            55                             92 
$`DEL PEAK 31(15Q13.1) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-A1-A0SF TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SO 
      131.67        42.81        48.10        20.88        31.79        28.01 
TCGA-A1-A0SP TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CL 
       19.20        18.02        78.41        87.25       101.98        99.12 
TCGA-A2-A0CM TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 
       24.79        77.19        75.25       107.93        56.81        67.33 
TCGA-A2-A0D4 TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ET TCGA-A2-A0EY 
       25.22        89.36        80.28        79.76        35.05        63.29 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YE 
       54.64        27.12        44.88        49.84        20.75        18.21 
TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A3XS TCGA-A2-A3XU 
       18.61        31.73        19.20        42.44        33.93        29.98 
TCGA-A2-A3XX TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0D9 
       47.31        50.83         7.30        21.90        35.31        37.45 
TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13H TCGA-A7-A26E 
       35.67        29.79        31.73        20.19        29.56        31.36 
TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D 
       21.73        22.32        11.28        14.50        21.17        14.73 
TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       12.10        10.29         9.37        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07L TCGA-A8-A07R 
        1.02        53.98        43.00        18.97        32.05         8.98 
TCGA-A8-A07U TCGA-A8-A084 TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08O 
       24.99        15.06        19.96        12.00         9.99        31.00 
TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09M 
       43.00        30.97        17.95         9.99         1.02        33.07 
TCGA-A8-A09N TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-AC-A23E TCGA-AC-A2BK TCGA-AC-A2BM 
        1.02         0.99        17.03        22.95        73.05        99.35 
TCGA-AC-A2FM TCGA-AC-A2QJ TCGA-AC-A3OD TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A6IW 
       26.04        14.66        14.83        14.96        13.71        13.58 
TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
       20.19         1.12         2.96         1.71         9.96         7.36 
TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FT 
        0.33         0.33         6.44         7.96         7.00         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XN 
        0.33         0.36         0.33         0.33         0.33         0.33 
TCGA-AN-A0XO TCGA-AN-A0XS TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03P TCGA-AO-A03V 
       12.33         0.33        80.28        61.35        95.70        29.13 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JL 
       37.48        20.32        53.03        50.70        72.00        55.33 
TCGA-AO-A124 TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT 
      115.27       108.03        64.04        61.87         0.53        17.79 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TR TCGA-AR-A0TS 
       24.79        26.93         2.56        32.91         5.26        84.10 
TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U1 
      109.02        75.22        98.93        64.83        55.86       133.22 
TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AN TCGA-AR-A1AQ 
      107.21       125.16       108.36       101.00        96.00        99.32 
TCGA-AR-A1AR TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24R TCGA-AR-A24S 
       17.23        86.53        33.73       160.90       112.77        97.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A256 
      105.30        32.58        98.66        99.62        71.05        93.83 
TCGA-AR-A2LK TCGA-AR-A2LR TCGA-B6-A0I1 TCGA-B6-A0IB TCGA-B6-A0IH TCGA-B6-A0IJ 
       54.21        57.27        77.62       129.57       112.37       233.62 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RS 
      140.88       255.68        68.45       162.05       102.77       100.70 
TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
      282.90        79.63       113.79        43.59       101.52        73.51 
TCGA-B6-A3ZX TCGA-B6-A402 TCGA-B6-A409 TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       37.87        70.16        18.84        71.15        62.93        59.84 
TCGA-BH-A0B2 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BP 
       40.83        70.22        81.63        51.68        37.22        75.48 
TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C7 
       45.57        77.95        49.05        41.75        44.02        90.97 
TCGA-BH-A0DP TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0H7 
       15.65        70.88         4.41         9.63        24.49        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY 
       41.00        26.50        13.61        12.89        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18J TCGA-BH-A18K 
        5.59        44.81        23.05        32.91        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18Q TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO 
       26.66        55.63         7.36        51.39        67.50        91.99 
TCGA-BH-A1ES TCGA-BH-A1EV TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FH 
      113.82        12.00        31.53        97.48       114.15        36.92 
TCGA-BH-A1FM TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A5IZ TCGA-C8-A12L TCGA-C8-A12P 
       45.63        38.60        57.83        18.64        11.93        11.77 
TCGA-C8-A12U TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A134 TCGA-C8-A135 
       12.66        12.66        48.53         3.16        12.59        12.92 
TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
        4.08        10.92         0.16        12.03        12.33        12.95 
TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A278 TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A146 
       12.95         9.53         9.50        20.88        13.97        21.14 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JP 
       14.17        17.49        18.90        12.03        53.00        21.01 
TCGA-D8-A1XB TCGA-D8-A1XF TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XQ 
       18.15        15.22        14.50        19.92        55.30        16.41 
TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A27F 
       16.31        12.99        16.54        15.32         9.93        16.04 
TCGA-D8-A27M TCGA-D8-A73U TCGA-D8-A73X TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A10F 
       13.48        16.18        25.22        46.59        40.11        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A150 
       47.15        44.68        38.60        34.26        32.02        63.62 
TCGA-E2-A152 TCGA-E2-A154 TCGA-E2-A159 TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A1AZ 
       69.96        19.43        25.05        18.21        12.92        76.57 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1II TCGA-E2-A1IO TCGA-E2-A1L7 
       28.50        37.25        37.41        33.70        60.99        60.36 
TCGA-E2-A1L8 TCGA-E2-A1LB TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 
       73.64        75.81       106.75       102.61         8.75        26.99 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 
       34.92        38.76        34.29        22.29        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NI TCGA-E9-A1R4 TCGA-E9-A1RC TCGA-E9-A1RE 
       36.56        41.62         9.86         6.12        40.24        46.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A22D 
        6.58        21.27        46.59        47.64        34.45        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       41.72        40.73         0.69        38.99         1.94         7.13 
TCGA-E9-A295 TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5FL TCGA-E9-A5UP 
       12.33        38.07        30.18        30.44         0.79        26.40 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P8 
       28.77        25.94        22.82        40.41        29.82         7.86 
TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3E8 
        6.15        19.96        55.00        52.73        25.91        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SD 
       17.49        10.16        23.51        16.77        24.99        33.21 
TCGA-GI-A2C9 TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YX 
      109.87        70.85        72.10        69.30         2.60        11.57 
TCGA-LL-A441 TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR 
       32.75        14.70        14.79        22.26         2.63        16.08 
TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66K TCGA-OL-A6VO 
       19.59        58.52        20.38        23.47        41.92        28.21 
TCGA-OL-A97C TCGA-PE-A5DD TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA10 TCGA-S3-AA17 
        8.91        64.21        18.81        18.48        19.27        13.94 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB44 TCGA-Z7-A8R5 
       17.03         3.81        11.41        29.03       108.07 

$`DEL PEAK 31(15Q13.1) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA 
      129.14        40.14        11.44        48.56        48.36         9.96 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SJ 
        8.52        14.37        43.43        14.27        47.24        13.68 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04T 
        7.96        39.32        18.21       143.15       121.94        73.84 
TCGA-A2-A04V TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CP 
       63.12        55.43        36.13       136.73       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0D1 TCGA-A2-A0D2 
       88.60       107.93         5.19        98.99        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EU 
       61.58       101.72       118.45        74.40        72.00        34.29 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SX TCGA-A2-A0SY 
       31.82        61.94        24.72        99.19        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.52        17.13         8.38        20.52        17.46        18.90 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI 
       32.55        25.28        50.47        21.90        21.67        49.48 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       19.33        48.46        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       22.45        20.25        19.56        16.47        52.47       107.70 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RX 
       91.07        32.75        56.28        35.93        50.37        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG 
       21.30        23.21        26.96        21.14        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DB TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A26F 
       35.47        30.61        33.11        25.15        23.61        24.26 
TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       23.74        23.80        20.61        11.34        10.59        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SF 
       13.41        14.70        11.97        14.93        13.74        17.92 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P 
       10.72        11.05        10.42         8.75        13.02        13.02 
TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07E 
        1.02        53.06        29.03        17.03         9.01        19.99 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S 
       18.97        14.01        12.00         9.99        10.98         7.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
        9.99        45.07        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08J TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S 
       28.96        33.01        37.05        31.00         0.99        33.01 
TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
      112.08        40.01        33.01        41.98        12.00         9.99 
TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09Q 
       12.00        50.04        49.05        45.07        29.98        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AD TCGA-AC-A23C 
       19.04        13.02        21.04        27.02        38.04         0.95 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       73.91         5.72         1.48        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3BB 
       60.92        87.12        74.14        33.04        19.33        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN 
        6.48        16.31        22.19        24.13        25.05        14.99 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE 
       16.57        19.79        15.48        23.24        24.79        29.26 
TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62Y TCGA-AC-A6IV 
       16.80        14.53        19.33        11.44        17.42        18.67 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OR TCGA-AC-A8OS 
       12.26         1.68         8.22         0.03         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04C 
        0.33         0.33         0.23         0.33         0.62         1.78 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0FF TCGA-AN-A0FL TCGA-AN-A0FN 
        7.46         0.16         0.33         5.65         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0XL TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU 
        6.90         5.36         0.30         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T 
        5.33         5.59        66.77        81.63        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J8 
       58.95        32.78        21.40        52.18        26.04        22.36 
TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI 
       21.53        50.86        76.77        65.10        26.24        50.24 
TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A 
       62.04        71.80        99.25       108.72       106.78        90.58 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        57.30        48.36        41.62        40.57        14.73 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       82.62        70.39       130.09         5.65        15.62        32.52 
TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 
       19.20       140.55        98.33       107.24        65.36        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AO TCGA-AR-A1AP 
      134.14       103.86        97.68        98.33        86.07        93.90 
TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A24K TCGA-AR-A24L 
       37.81        94.29        61.28        86.43        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24T 
      120.33        99.78       118.59         2.76       104.28       105.27 
TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A2LE 
       77.69        98.76        89.00        93.30        85.64       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        66.15        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I2 
       40.54        73.35        33.30        38.96        10.59       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
      281.29        12.13       275.87        50.70        65.72       146.50 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RH 
       18.77       127.33        84.59       165.76       129.07       212.25 
TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RQ TCGA-B6-A0RT 
      234.28        81.17        78.02       263.28       140.48        89.46 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ 
      157.41        97.48       188.68        18.35        21.47       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KN 
      129.70       245.10        28.27        68.94        58.88       139.17 
TCGA-B6-A2IU TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A40B TCGA-BH-A0AW 
      170.17         7.07        85.35        68.12       103.63        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B7 
       25.55        63.09        81.44        39.55        39.16        84.13 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV 
       61.68        72.23        74.14        76.60        53.95        49.94 
TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       89.06        45.83        77.98        23.44        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        17.26         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 
       67.86        16.27        15.68        14.30        44.81        46.19 
TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       32.58        31.00        24.43        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HA TCGA-BH-A0HI TCGA-BH-A0HK 
       37.78        53.26        24.56        52.96        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
        2.50        36.85        51.32        23.93        24.95        42.35 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R 
        4.90        35.93        72.56        37.74        30.28        37.55 
TCGA-BH-A18S TCGA-BH-A18V TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW TCGA-BH-A1EX 
       66.05        51.16        82.85        42.28        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD 
       17.69        25.81        89.16        24.62       120.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR 
       74.73       122.89        63.35        55.00        72.07       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O 
       72.07        28.14        26.14        83.31       130.16        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 
        6.44        20.12        10.52       109.28        20.88        23.51 
TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 
        9.63         5.26         9.70        18.87        21.76         9.44 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W 
       11.77        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HG 
       12.56        13.51         1.87         4.11        12.33        11.34 
TCGA-C8-A1HI TCGA-C8-A1HL TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       11.28        10.42        12.33        20.25        12.53        12.36 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
        8.28         9.67         0.03        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y 
       12.95        13.02        12.49        13.41        19.46        56.81 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1JA 
       13.25        20.58        14.17        13.48        19.20        16.50 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       55.50        15.78        18.15        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT 
       20.12        20.09        19.40        20.38        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XM 
       27.58        12.39        17.16        14.73        21.80        17.69 
TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y2 
       15.85        16.64        15.16        43.04        15.52        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       14.14        17.42        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       16.41         4.80         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73W TCGA-E2-A105 
       12.26        33.37        18.51        21.67        12.66        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A14P 
       34.42        27.52        40.41        37.51        28.44        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Y 
       38.24        33.17        75.98        43.33        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A 
       18.51        23.24        21.04        23.87        14.79        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15I TCGA-E2-A15J 
       22.82        17.29        20.71        21.63        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
        9.04        20.58        11.05        50.79        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       14.07        51.39        53.62        87.22        33.01        32.35 
TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK 
       16.47        77.65        70.36        33.73        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LA 
        3.88        22.19        11.08        54.18        19.66        24.59 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
       28.90        50.07        43.04        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1NC 
       30.61        17.69        34.82        32.88        36.82        39.55 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.77        35.24        25.84        18.94        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
       34.95         2.56         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       32.09         1.12        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT 
       38.37        40.50        20.12        24.56        29.72         9.47 
TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A6HE 
       32.91        23.90        23.84        26.70        25.81        27.85 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 
       16.57        15.68        29.95        29.85        41.13        39.78 
TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB 
       52.96        23.11        18.48        30.08        18.90        19.99 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FW TCGA-EW-A6S9 
       13.94        10.52        14.43        34.55        22.09        15.22 
TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
       31.30         7.40        59.57       216.76        79.10        83.34 
TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       75.02        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 
       85.35       110.50        38.20        43.73        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U 
       13.55        18.12        62.47        11.84        21.24        13.22 
TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y 
        7.10        13.28        10.62        24.95        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 
       17.06        15.32        14.47        15.68         7.46        14.50 
TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       19.53        12.36        17.49        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        31.99        58.62        40.08        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66L 
       28.87        24.72        22.32        26.70        65.62        42.77 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-PE-A5DC 
       26.04        17.36        14.07        19.73        40.11        47.01 
TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA0Z 
       86.96         0.16         0.26         9.93        21.07        20.68 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-V7-A7HQ TCGA-WT-AB41 
       13.84        18.87        17.39        17.26        66.84        52.96 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R6 
       15.35        16.04       107.05 

  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                        282.90                         281.29 
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                         30.18                          25.84 
[1] "0.2 - 282.9 (30.2)" "0.0 - 281.3 (25.8)"
[1] "hr=" "1.1"
D60V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 31(15Q13.1) MUTATED        27       23        1        2       138
  DEL PEAK 31(15Q13.1) WILD-TYPE      62       62        5        4       215
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 31(15Q13.1) MUTATED          88         1         58          6
  DEL PEAK 31(15Q13.1) WILD-TYPE       164         1         96         23
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 31(15Q13.1) MUTATED           16       10         0       3
  DEL PEAK 31(15Q13.1) WILD-TYPE         49       10         1      10
D60V3, multiclass
            clus
vv           DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  STAGE I                              27                             62
  STAGE IA                             23                             62
  STAGE IB                              1                              5
  STAGE II                              2                              4
  STAGE IIA                           138                            215
  STAGE IIB                            88                            164
  STAGE III                             1                              1
  STAGE IIIA                           58                             96
  STAGE IIIB                            6                             23
  STAGE IIIC                           16                             49
  STAGE IV                             10                             10
  STAGE TIS                             0                              1
  STAGE X                               3                             10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 31(15Q13.1) MUTATED    73 246  43  12
  DEL PEAK 31(15Q13.1) WILD-TYPE 203 378  93  28
D60V4, multiclass
    clus
vv   DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  T1                           73                            203
  T2                          246                            378
  T3                           43                             93
  T4                           12                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 31(15Q13.1) MUTATED   193 110  49  20
  DEL PEAK 31(15Q13.1) WILD-TYPE 314 248  70  57
D60V5, multiclass
    clus
vv   DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  N0                          193                            314
  N1                          110                            248
  N2                           49                             70
  N3                           20                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V6, binary
                                cls
clus                               0   1
  DEL PEAK 31(15Q13.1) MUTATED   314  10
  DEL PEAK 31(15Q13.1) WILD-TYPE 575  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q13.1) MUTATED    314   10
  DEL PEAK 31(15Q13.1) WILD-TYPE  575   12
   clus
vv  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  0                          314                            575
  1                           10                             12
[1] 2 2
[1] FALSE
D60V7, binary
                                cls
clus                               0   1
  DEL PEAK 31(15Q13.1) MUTATED   370   5
  DEL PEAK 31(15Q13.1) WILD-TYPE 698   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q13.1) MUTATED    370    5
  DEL PEAK 31(15Q13.1) WILD-TYPE  698    7
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  FEMALE                          370                            698
  MALE                              5                              7
[1] 2 2
[1] FALSE
D60V8, binary
                                cls
clus                               0   1
  DEL PEAK 31(15Q13.1) MUTATED   142 185
  DEL PEAK 31(15Q13.1) WILD-TYPE 287 333
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q13.1) MUTATED    142  185
  DEL PEAK 31(15Q13.1) WILD-TYPE  287  333
     clus
vv    DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  NO                           142                            287
  YES                          185                            333
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 31(15Q13.1) MUTATED                            1
  DEL PEAK 31(15Q13.1) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 31(15Q13.1) MUTATED                             305
  DEL PEAK 31(15Q13.1) WILD-TYPE                           465
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 31(15Q13.1) MUTATED                               39
  DEL PEAK 31(15Q13.1) WILD-TYPE                            161
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 31(15Q13.1) MUTATED                     4                     3
  DEL PEAK 31(15Q13.1) WILD-TYPE                   2                     6
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 31(15Q13.1) MUTATED                                 10
  DEL PEAK 31(15Q13.1) WILD-TYPE                               19
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 31(15Q13.1) MUTATED                    1             11
  DEL PEAK 31(15Q13.1) WILD-TYPE                 16             36
D60V9, multiclass
                                  clus
vv                                 DEL PEAK 31(15Q13.1) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             305
  INFILTRATING LOBULAR CARCINOMA                             39
  MEDULLARY CARCINOMA                                         4
  METAPLASTIC CARCINOMA                                       3
  MIXED HISTOLOGY (PLEASE SPECIFY)                           10
  MUCINOUS CARCINOMA                                          1
  OTHER  SPECIFY                                             11
                                  clus
vv                                 DEL PEAK 31(15Q13.1) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               465
  INFILTRATING LOBULAR CARCINOMA                              161
  MEDULLARY CARCINOMA                                           2
  METAPLASTIC CARCINOMA                                         6
  MIXED HISTOLOGY (PLEASE SPECIFY)                             19
  MUCINOUS CARCINOMA                                           16
  OTHER  SPECIFY                                               36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 31(15Q13.1) MUTATED                                  0    23
  DEL PEAK 31(15Q13.1) WILD-TYPE                                1    37
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 31(15Q13.1) MUTATED                          79   243
  DEL PEAK 31(15Q13.1) WILD-TYPE                       102   502
D60V11, multiclass
                                  clus
vv                                 DEL PEAK 31(15Q13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      23
  BLACK OR AFRICAN AMERICAN                                  79
  WHITE                                                     243
                                  clus
vv                                 DEL PEAK 31(15Q13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        37
  BLACK OR AFRICAN AMERICAN                                   102
  WHITE                                                       502
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V12, binary
                                cls
clus                               0   1
  DEL PEAK 31(15Q13.1) MUTATED    13 308
  DEL PEAK 31(15Q13.1) WILD-TYPE  26 567
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q13.1) MUTATED     13  308
  DEL PEAK 31(15Q13.1) WILD-TYPE   26  567
                        clus
vv                       DEL PEAK 31(15Q13.1) MUTATED
  HISPANIC OR LATINO                               13
  NOT HISPANIC OR LATINO                          308
                        clus
vv                       DEL PEAK 31(15Q13.1) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            567
[1] 2 2
[1] FALSE

Clustering(61) Variable = DEL PEAK 32(16Q24.3) MUTATION ANALYSIS
D61V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 32(16Q24.3) MUTATED   587  96
  DEL PEAK 32(16Q24.3) WILD-TYPE 330  51
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                           683                            381 
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                            96                             51 
$`DEL PEAK 32(16Q24.3) MUTATED`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SD TCGA-A1-A0SE 
       40.14        11.44        48.56        48.36        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM 
       48.10        14.27        47.24        20.88        31.79         7.96 
TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V 
       39.32        28.01       143.15       121.94        87.25        63.12 
TCGA-A2-A0CK TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS 
      136.73       114.81        92.48        88.60       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 
       75.25         5.19        98.99        56.81        67.33        34.55 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EQ 
       61.58        25.22       101.72        89.36        80.28        79.76 
TCGA-A2-A0ER TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       74.40        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0SU TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T4 TCGA-A2-A0T5 
       54.64        44.28        17.52        17.13        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YH 
       18.90        20.75        32.55        25.28        50.47        21.67 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1G0 
       19.33        48.46        31.73        23.47        60.72        20.25 
TCGA-A2-A1G4 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3KC 
       19.56        52.47       107.70        18.15       105.34        36.23 
TCGA-A2-A3KD TCGA-A2-A3XT TCGA-A2-A4RY TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE 
       39.65        91.07        21.30        21.90        38.30        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       34.29        35.47        30.61        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26I 
       31.73        25.15        23.61        29.56        31.36        21.73 
TCGA-A7-A26J TCGA-A7-A3IZ TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB 
       20.61        10.59        11.28        11.97        14.93        13.74 
TCGA-A7-A4SE TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A8-A06O TCGA-A8-A06P 
       21.17        10.72        11.05         9.37        13.02        13.02 
TCGA-A8-A06Q TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 
        1.02        53.06        29.03        31.00         1.02        17.03 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J 
        9.01        43.00        19.99        18.97        18.97        12.00 
TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 
       32.05        10.98         7.99        15.06        36.95        13.02 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08L TCGA-A8-A08O 
       38.01        28.96        33.01        19.96         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
       31.00        33.01       112.08        43.00        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A 
       30.97        17.95        41.98        12.00         9.99         9.99 
TCGA-A8-A09B TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R 
       12.00        29.98        33.07         1.02        25.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       13.02        21.04         0.99        27.02        17.03        38.04 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       22.95        73.91         1.48        73.05        99.35        40.57 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI 
       86.66        90.71        60.92        26.04        74.14        19.33 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ 
       32.45         6.48        16.31        14.83        22.19        24.13 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI 
       25.05        14.99        16.57        19.79        15.48        23.24 
TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62V 
       29.26        16.80        14.53        19.33        14.96        11.44 
TCGA-AC-A62X TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VB 
       13.71        18.67        13.58        12.26         1.68         8.22 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
        0.03        20.19         1.12         2.30         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.23         0.33         0.62         1.78         9.96         7.36 
TCGA-AN-A0AR TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0FZ 
        0.33         7.00         7.17         6.90         0.36         0.33 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
        0.33        80.28        66.77        81.63        95.70        68.75 
TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       29.13        21.40        26.04        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A 
       50.24        62.04        99.25       108.72       108.03        90.58 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12G TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR 
       98.27        57.30        41.62        82.62        61.87        70.39 
TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 
        0.53        17.79        15.62        32.52         2.56        19.20 
TCGA-AR-A0TV TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 
       75.22        55.86       107.24        83.87       134.14       107.21 
TCGA-AR-A1AH TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AP 
      125.16       103.86        97.68        98.33        96.00        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24K 
       99.32        17.23        86.53        86.43       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24S TCGA-AR-A24T 
       94.22        99.78       118.59         2.76        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A255 
       77.69       105.30        98.76        99.62        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
       93.83       166.42        86.53        54.21        66.15        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-B6-A0I5 TCGA-B6-A0IA 
       38.17        39.39        40.54        33.30       281.29       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IH TCGA-B6-A0IM TCGA-B6-A0IP TCGA-B6-A0IQ 
      129.57        50.70       112.37       127.33       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL TCGA-B6-A0RM 
      255.68        68.45       212.25       234.28        81.17        78.02 
TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS TCGA-B6-A0RV TCGA-B6-A0WS 
      263.28       102.77       140.48       100.70       157.41        97.48 
TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X7 TCGA-B6-A1KC 
      188.68        18.35       206.86       129.70        58.88        43.59 
TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A40B 
       73.51       170.17        37.87        70.16        68.12       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       71.15        62.93        20.45        25.55        63.09        81.44 
TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA 
       40.83        39.16        70.22        81.63        84.13        37.22 
TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       32.02        43.53        61.68        72.23        75.48        74.14 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DE 
       53.95        45.57        44.02        89.06        90.97        77.98 
TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT 
       38.01        13.91        17.26        15.65         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       67.86        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0GY 
       44.81        46.19        32.58        24.49        31.00        30.35 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HB TCGA-BH-A0HI 
       15.16        37.78        53.26        24.56        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       27.25        50.79        23.93        24.95        42.35        44.81 
TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
       32.91        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO 
       37.74        30.28         7.36        51.39        67.50        91.99 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EY TCGA-BH-A1F2 
       82.85        42.28        12.00        55.69        17.69        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       89.16        24.62       120.62       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
      122.89        55.00        72.07        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        10.65         6.44        20.12        10.52 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
       20.88        18.64        23.51         9.70        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Y TCGA-C8-A12Z 
        9.44        11.93        11.77        11.77        48.53        12.56 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92         4.11         4.08        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       11.28        12.33        12.95        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ 
       12.95         9.53         9.50        33.99        12.95        12.49 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A146 
       56.81        20.88        20.58        13.97        13.48        21.14 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG 
       14.17        17.49        15.78        18.15        18.90        53.00 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       18.97        20.09        20.38        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XB 
       14.70        18.58        17.79        25.74        23.90        18.15 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       14.50        19.92        55.30        16.41        15.85        16.31 
TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27I 
       16.54        15.52         9.93        14.14        13.45        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 
       48.03        16.41         1.61        13.08        12.53        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A107 
       18.51        21.67        16.18        12.66        25.22        34.42 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O 
       46.59        40.41        40.11        28.44        28.87        44.68 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Y 
       38.24        33.17        43.33        34.26        32.02        69.34 
TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 
       18.51        23.24        19.43        21.04        23.87        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G 
       23.34        22.82        17.29        20.71        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B4 
       50.79        19.56        56.94        14.07        51.39        33.01 
TCGA-E2-A1B5 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IH 
       32.35        16.47        37.25        77.65        37.41        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       33.70        28.44         3.88        60.99        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LK 
       60.36        73.64        24.59        50.07       106.75         8.75 
TCGA-E2-A1LL TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 
       43.04        26.99        34.55        43.56        30.61        34.92 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1NC 
       34.29        17.69        32.88        36.82        34.16        39.55 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.24        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RI 
       45.01        32.09         1.12        46.65        21.27        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       34.45        32.05        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3X8 TCGA-E9-A54Y TCGA-E9-A5UP 
       12.33        29.72        38.07        30.44        23.84        26.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       27.85        12.20         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OZ TCGA-EW-A1P3 
       16.57        15.68        28.77        25.94        40.41        52.96 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PG 
       23.11        18.48         7.86         6.15        10.52        34.55 
TCGA-EW-A2FS TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 TCGA-EW-A6SA 
       52.73        34.03        10.16        23.51        15.22        16.77 
TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC 
       31.30        33.21         7.40        59.57       216.76        83.34 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DL TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW 
       72.10        85.15       115.69       101.62        85.35       110.50 
TCGA-GM-A3NY TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       38.20        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W6 TCGA-LD-A9QF 
       62.47        11.57        21.24        13.22        13.28        10.62 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A6FP TCGA-LL-A7T0 TCGA-LQ-A4E4 
       25.05        17.06        14.70        22.26        12.36        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5S0 TCGA-OL-A66J TCGA-OL-A66K 
       34.92        36.36        28.87        20.38        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR 
       42.77        26.04        14.07        28.21        19.73        40.11 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA0Z 
       47.01        64.21        86.96        18.81        18.48        20.68 
TCGA-S3-AA10 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA17 TCGA-V7-A7HQ TCGA-W8-A86G 
       19.27        18.87        17.39        13.94        66.84        11.41 
TCGA-WT-AB44 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       29.03        15.35        16.04       108.07       107.05 

$`DEL PEAK 32(16Q24.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SJ 
      129.14       131.67        42.81         9.96         8.52        13.68 
TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04T TCGA-A2-A04W 
       19.20        18.21        18.02        78.41        73.84       101.98 
TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CW TCGA-A2-A0D2 
       55.43        36.13        99.12        24.79       107.93        33.76 
TCGA-A2-A0EP TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW 
      118.45        72.00        35.05        99.19        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YI 
       50.43         8.38        49.84        18.21        21.90        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A1G6 
       18.61        23.77        17.36        22.45        19.20        16.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3XS TCGA-A2-A3XU TCGA-A2-A3XV 
       42.44        17.19        10.59        33.93        29.98        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW 
       56.28        47.31        35.93        50.37        50.83         7.30 
TCGA-A2-A4RX TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0D9 TCGA-A7-A13E 
       24.39        23.21        26.96        21.14        37.45        20.19 
TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3J0 
       24.26        23.74        23.80        22.32        11.34        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       13.41        14.70        14.50        17.92        14.73        12.10 
TCGA-A7-A6VV TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A076 
       10.29        10.42         8.75        17.98        26.01        53.98 
TCGA-A8-A07I TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
       14.01         9.99         8.98        24.99         9.99        45.07 
TCGA-A8-A08A TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A09C TCGA-A8-A09D 
        0.99        12.00        37.05         0.99         1.02        50.04 
TCGA-A8-A09E TCGA-A8-A09I TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2FK TCGA-AC-A2QH 
       49.05        45.07         0.95         5.72        87.12        33.04 
TCGA-AC-A2QJ TCGA-AC-A3YJ TCGA-AC-A62Y TCGA-AC-A8OR TCGA-AN-A04A TCGA-AN-A04D 
       14.66        24.79        17.42         1.32         2.96         1.71 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        7.46         0.16         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY 
        7.96         7.59         7.04         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03T TCGA-AO-A03U 
        0.33         5.33         5.59        61.35        47.87        58.95 
TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0JG TCGA-AO-A0JL TCGA-AO-A0JM 
       32.78        52.18        37.48        26.24        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A128 TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12H TCGA-AO-A1KO 
      115.27       106.78        64.04        48.36        40.57        14.73 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A54O TCGA-AR-A0TP 
       24.79        26.93       130.09         5.65        32.91       140.55 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TX 
       98.33         5.26        84.10       109.02        98.93        64.83 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AO TCGA-AR-A1AS 
       65.36       133.22       108.36       101.00        86.07        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24M TCGA-AR-A24Q TCGA-AR-A24R 
       94.29        61.28        33.73       120.33       104.28       112.77 
TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A2LH TCGA-AR-A2LR 
       32.58        98.66        89.00        93.30        20.25        57.27 
TCGA-AR-A5QM TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I9 
       73.35        38.96        10.59        77.62       143.38        12.13 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IN TCGA-B6-A0IO 
       65.72       146.50       233.62        18.77        84.59       165.76 
TCGA-B6-A0RO TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WV TCGA-B6-A0WX TCGA-B6-A0WY 
      162.05        89.46       282.90        79.63        21.47       113.79 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A400 
      245.10        28.27        68.94       101.52       139.17         7.07 
TCGA-B6-A401 TCGA-B6-A409 TCGA-BH-A0AV TCGA-BH-A0B3 TCGA-BH-A0B9 TCGA-BH-A0BD 
       85.35        18.84        59.84        39.55        51.68        18.21 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BV TCGA-BH-A0BW 
       61.51        21.70        74.89        76.60        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DL 
       49.05        41.75        45.83        23.44        29.98        78.28 
TCGA-BH-A0DQ TCGA-BH-A0DX TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H7 TCGA-BH-A0H9 
        3.22        70.88        24.43        10.78        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0RX TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18Q TCGA-BH-A18R 
       52.96         5.59        23.05         4.90        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F6 
       66.05        51.16       113.82        49.58        25.81        97.48 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       36.92        63.35        45.63       144.59        72.07        28.14 
TCGA-BH-A42U TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12Q 
      109.28         9.63         5.26        11.77        12.66        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        12.66        12.66         3.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HO 
        1.87        12.59         0.16        12.03        10.42        12.33 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A8HP 
        8.28         9.67         0.03        24.56        14.43        13.02 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A140 TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1JA 
       13.41        19.46        13.25        14.17        19.20        16.50 
TCGA-D8-A1JB TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       55.50        12.03        14.01        20.12        20.09        19.40 
TCGA-D8-A1X7 TCGA-D8-A1XA TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG 
       16.73        27.58        12.39        17.16        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XM TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       21.80        17.69        16.64        12.99        15.16        43.04 
TCGA-D8-A1XZ TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27M 
       15.32        14.24        17.42        16.04        13.05        13.48 
TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10B 
        4.80        10.09        12.26        43.00        27.52        37.51 
TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14T TCGA-E2-A14X TCGA-E2-A150 
       47.15        40.96        38.60        75.98        31.96        63.62 
TCGA-E2-A152 TCGA-E2-A158 TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B6 
       69.96        14.79        76.57        53.62        87.22        28.50 
TCGA-E2-A1IG TCGA-E2-A1IK TCGA-E2-A1IN TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LE 
       70.36        59.18        22.19        19.66        75.81        28.90 
TCGA-E2-A1LI TCGA-E2-A56Z TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N6 TCGA-E9-A1N9 
      102.61         8.28        38.76        34.82        22.29        36.20 
TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1RC TCGA-E9-A1RF TCGA-E9-A1RH 
       36.56        41.62        35.77        40.24         6.58        46.59 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A2JT TCGA-E9-A3Q9 
       42.25        37.74        39.09        38.37         9.47        32.91 
TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-EW-A1IX 
       30.18        23.90        26.70         0.79        25.81        39.72 
TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       22.82        29.95        29.85        41.13        39.78        29.82 
TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PF TCGA-EW-A1PH 
       30.08        18.90        19.99        13.94        14.43        19.96 
TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-EW-A6SB TCGA-GI-A2C9 
       55.00        25.91        22.09        17.49        24.99       109.87 
TCGA-GM-A2DB TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A3XG 
       79.10        75.02        70.85        86.96       106.06        43.73 
TCGA-GM-A3XL TCGA-JL-A3YW TCGA-LD-A7W5 TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
       69.30        11.84         7.10        24.95        32.75        29.23 
TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y 
       15.32        14.47        14.79         2.63        16.08        15.68 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-OL-A5RU 
        7.46        14.50        19.53        19.59        17.49        40.08 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66O TCGA-OL-A97C 
       24.72        22.32        26.70        23.47        17.36         8.91 
TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH TCGA-S3-AA11 TCGA-S3-AA15 
        0.16         0.26         9.93        21.07        13.84        17.26 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB41 
       17.03         3.81        52.96 

  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                          0.03                           0.03 
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                        281.29                         282.90 
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                         29.03                          25.81 
[1] "0.0 - 281.3 (29.0)" "0.0 - 282.9 (25.8)"
[1] "hr=" "1"  
D61V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 32(16Q24.3) MUTATED        64       53        4        5       225
  DEL PEAK 32(16Q24.3) WILD-TYPE      25       32        2        1       128
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 32(16Q24.3) MUTATED         161         1         98         15
  DEL PEAK 32(16Q24.3) WILD-TYPE        91         1         56         14
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 32(16Q24.3) MUTATED           46        9         0      10
  DEL PEAK 32(16Q24.3) WILD-TYPE         19       11         1       3
D61V3, multiclass
            clus
vv           DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  STAGE I                              64                             25
  STAGE IA                             53                             32
  STAGE IB                              4                              2
  STAGE II                              5                              1
  STAGE IIA                           225                            128
  STAGE IIB                           161                             91
  STAGE III                             1                              1
  STAGE IIIA                           98                             56
  STAGE IIIB                           15                             14
  STAGE IIIC                           46                             19
  STAGE IV                              9                             11
  STAGE TIS                             0                              1
  STAGE X                              10                              3
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 32(16Q24.3) MUTATED   182 392  97  20
  DEL PEAK 32(16Q24.3) WILD-TYPE  94 232  39  20
D61V4, multiclass
    clus
vv   DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  T1                          182                             94
  T2                          392                            232
  T3                           97                             39
  T4                           20                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 32(16Q24.3) MUTATED   333 224  72  54
  DEL PEAK 32(16Q24.3) WILD-TYPE 174 134  47  23
D61V5, multiclass
    clus
vv   DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  N0                          333                            174
  N1                          224                            134
  N2                           72                             47
  N3                           54                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V6, binary
                                cls
clus                               0   1
  DEL PEAK 32(16Q24.3) MUTATED   568  10
  DEL PEAK 32(16Q24.3) WILD-TYPE 321  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16Q24.3) MUTATED    568   10
  DEL PEAK 32(16Q24.3) WILD-TYPE  321   12
   clus
vv  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  0                          568                            321
  1                           10                             12
[1] 2 2
[1] FALSE
D61V7, binary
                                cls
clus                               0   1
  DEL PEAK 32(16Q24.3) MUTATED   685   8
  DEL PEAK 32(16Q24.3) WILD-TYPE 383   4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16Q24.3) MUTATED    685    8
  DEL PEAK 32(16Q24.3) WILD-TYPE  383    4
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  FEMALE                          685                            383
  MALE                              8                              4
[1] 2 2
[1] FALSE
D61V8, binary
                                cls
clus                               0   1
  DEL PEAK 32(16Q24.3) MUTATED   270 333
  DEL PEAK 32(16Q24.3) WILD-TYPE 159 185
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16Q24.3) MUTATED    270  333
  DEL PEAK 32(16Q24.3) WILD-TYPE  159  185
     clus
vv    DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  NO                           270                            159
  YES                          333                            185
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 32(16Q24.3) MUTATED                            0
  DEL PEAK 32(16Q24.3) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 32(16Q24.3) MUTATED                             464
  DEL PEAK 32(16Q24.3) WILD-TYPE                           306
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 32(16Q24.3) MUTATED                              180
  DEL PEAK 32(16Q24.3) WILD-TYPE                             20
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 32(16Q24.3) MUTATED                     3                     1
  DEL PEAK 32(16Q24.3) WILD-TYPE                   3                     8
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 32(16Q24.3) MUTATED                                 21
  DEL PEAK 32(16Q24.3) WILD-TYPE                                8
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 32(16Q24.3) MUTATED                    3             21
  DEL PEAK 32(16Q24.3) WILD-TYPE                 14             26
D61V9, multiclass
                                  clus
vv                                 DEL PEAK 32(16Q24.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             464
  INFILTRATING LOBULAR CARCINOMA                            180
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       1
  MIXED HISTOLOGY (PLEASE SPECIFY)                           21
  MUCINOUS CARCINOMA                                          3
  OTHER  SPECIFY                                             21
                                  clus
vv                                 DEL PEAK 32(16Q24.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               306
  INFILTRATING LOBULAR CARCINOMA                               20
  MEDULLARY CARCINOMA                                           3
  METAPLASTIC CARCINOMA                                         8
  MIXED HISTOLOGY (PLEASE SPECIFY)                              8
  MUCINOUS CARCINOMA                                           14
  OTHER  SPECIFY                                               26
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 32(16Q24.3) MUTATED                                  1    34
  DEL PEAK 32(16Q24.3) WILD-TYPE                                0    26
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 32(16Q24.3) MUTATED                          97   490
  DEL PEAK 32(16Q24.3) WILD-TYPE                        84   255
D61V11, multiclass
                                  clus
vv                                 DEL PEAK 32(16Q24.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      34
  BLACK OR AFRICAN AMERICAN                                  97
  WHITE                                                     490
                                  clus
vv                                 DEL PEAK 32(16Q24.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        26
  BLACK OR AFRICAN AMERICAN                                    84
  WHITE                                                       255
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V12, binary
                                cls
clus                               0   1
  DEL PEAK 32(16Q24.3) MUTATED    21 554
  DEL PEAK 32(16Q24.3) WILD-TYPE  18 321
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16Q24.3) MUTATED     21  554
  DEL PEAK 32(16Q24.3) WILD-TYPE   18  321
                        clus
vv                       DEL PEAK 32(16Q24.3) MUTATED
  HISPANIC OR LATINO                               21
  NOT HISPANIC OR LATINO                          554
                        clus
vv                       DEL PEAK 32(16Q24.3) WILD-TYPE
  HISPANIC OR LATINO                                 18
  NOT HISPANIC OR LATINO                            321
[1] 2 2
[1] FALSE

Clustering(62) Variable = DEL PEAK 33(17P12) MUTATION ANALYSIS
D62V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 33(17P12) MUTATED   546  96
  DEL PEAK 33(17P12) WILD-TYPE 371  51
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         642                          422 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                          96                           51 
$`DEL PEAK 33(17P12) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       14.37        43.43        48.10        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ TCGA-A2-A04P 
       31.79        39.32        28.01        19.20        18.21        18.02 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y TCGA-A2-A0CK 
      121.94        73.84        63.12       101.98        36.13       136.73 
TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CR TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       24.79       114.81       107.93        75.25         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D4 TCGA-A2-A0EN 
      107.93        56.81        67.33        34.55        25.22        89.36 
TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0EV TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0SV 
       80.28        79.76        31.82        24.72        63.29        27.12 
TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.88        50.43        44.28        17.13        49.84        20.52 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YK 
       20.75        32.55        18.21        21.90        21.67        19.33 
TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1G0 TCGA-A2-A1G1 
       48.46        23.77        23.47        17.36        20.25        19.20 
TCGA-A2-A1G4 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A3KD 
       19.56        52.47       107.70        42.44        18.15        39.65 
TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       91.07        32.75        56.28        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG 
        7.30        24.39        26.96        21.90        38.30        34.29 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A13H 
       30.61        37.45        35.67        31.73        25.15        29.56 
TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       31.36        24.26        23.74        23.80        21.73        22.32 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       14.93        13.74        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZX TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06R 
       11.05         9.37        10.42         8.75        13.02        17.98 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       29.03        31.00         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A07O 
       43.00        19.99        18.97        14.01        32.05         9.99 
TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B 
        8.98         9.99        15.06        36.95        13.02        38.01 
TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       33.01        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A097 
        0.99        33.01        43.00        30.97        17.95        12.00 
TCGA-A8-A09A TCGA-A8-A09C TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N 
        9.99         1.02        45.07        29.98        33.07         1.02 
TCGA-A8-A09R TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
        8.98        14.01        19.04        13.02        21.04         0.99 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A2BM TCGA-AC-A2FB 
       17.03        38.04         0.95        22.95        99.35        40.57 
TCGA-AC-A2FM TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3OD 
       26.04        19.33        14.66        32.45         6.48        14.83 
TCGA-AC-A3QQ TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A4ZE 
       24.13        14.99        16.57        19.79        15.48        29.26 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IX TCGA-AC-A7VB 
       16.80        14.96        13.71        17.42        12.26         8.22 
TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OS TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04A 
       20.19         1.12         2.30         0.23         0.33         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS 
        1.78         1.71         9.96         7.46         0.16         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV 
        0.33         6.44         7.96         7.59         7.04         0.33 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.33         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03M 
        0.30         0.33         0.33         0.33         5.59        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03V 
       66.77        81.63        95.70        68.75        47.87        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JD 
       32.78        21.40        52.18        21.53        50.70        72.00 
TCGA-AO-A0JE TCGA-AO-A0JG TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A126 
       76.77        26.24        62.04        71.80       115.27       108.72 
TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A12G TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
      108.03        64.04        41.62        61.87        70.39         0.53 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H3 TCGA-AQ-A54N 
       24.79        26.93       130.09         5.65        32.52         2.56 
TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TY 
       32.91       140.55         5.26       109.02        98.93        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
      107.24       133.22        83.87       134.14       107.21       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AQ TCGA-AR-A1AR 
      108.36       101.00        98.33        96.00        99.32        17.23 
TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L 
       37.81        94.29        86.43        33.73       160.90        94.22 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
      118.59         2.76       112.77        97.84       105.27        77.69 
TCGA-AR-A24V TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
      105.30        98.66        89.00        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
       93.83       166.42        86.53        54.21        66.15        63.62 
TCGA-AR-A5QM TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IE 
       73.35        38.96        10.59        12.13       129.57        65.72 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      165.76       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RL TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
       81.17       100.70        89.46       282.90       157.41        97.48 
TCGA-B6-A0WV TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X1 TCGA-B6-A0X7 TCGA-B6-A1KN 
       79.63       113.79       206.86       245.10        58.88       139.17 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
       70.16        68.12        18.84        59.84        20.45        25.55 
TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 
       81.44        40.83        39.55        39.16        70.22        81.63 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BM TCGA-BH-A0BP 
       51.68        37.22        32.02        43.53        61.68        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       74.14        76.60        77.95        49.05        41.75        44.02 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       90.97        45.83        77.98        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E6 
       15.65        70.88        16.27         4.41        14.30         9.63 
TCGA-BH-A0E9 TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HA 
       46.19        31.00        24.43        15.16        23.08        52.96 
TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HY 
       26.50         5.85        13.61        12.89        51.32        50.79 
TCGA-BH-A0W4 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J 
       24.95        44.81        23.05        32.91        35.93        20.12 
TCGA-BH-A18L TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       26.66        30.28        55.63        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EY 
       51.16        91.99       113.82        42.28        12.00        17.69 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       31.53        97.48        24.62        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A201 TCGA-BH-A202 
       36.92        63.35        45.63        72.07        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 
       38.60        57.83       130.16        10.52        18.64        23.51 
TCGA-BH-A8FZ TCGA-C8-A12L TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       18.87        11.93        12.66        11.77        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56         3.16        13.51         1.87        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.92         4.11         4.08        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
        0.16        12.03        10.42        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A278 
       20.25        12.53        12.36        12.95         8.28         9.50 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
       24.56        14.43        33.99        12.95        13.02        12.49 
TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 
       19.46        56.81        20.88        13.48        21.14        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JN TCGA-D8-A1JP 
       18.90        53.00        20.09        20.12        20.38        21.01 
TCGA-D8-A1JT TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XF 
       13.32        18.58        16.73        23.90        27.58        15.22 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XQ TCGA-D8-A1XS 
       21.80        14.50        19.92        17.69        16.41        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       16.64        12.99        16.54        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27M TCGA-D8-A27N 
       14.24        14.14        13.45        13.05        13.48         4.80 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A73U TCGA-D8-A73W TCGA-E2-A105 TCGA-E2-A10C 
       10.09        13.08        16.18        12.66        43.00        40.11 
TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T 
       28.87        44.68        38.24        38.60        33.17        75.98 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       34.26        32.02        31.96        69.34        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 
       69.96        23.24        21.04        23.87        14.79        25.05 
TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15M 
       23.34        20.71        18.21        12.92        55.63        11.05 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B5 
       14.07        51.39        76.57        53.62        87.22        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       28.50        16.47        77.65        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1LA 
       28.44        22.19        60.99        60.36        73.64        24.59 
TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A2P5 
       28.90        50.07       106.75       102.61        43.04        26.99 
TCGA-E2-A2P6 TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N5 
       34.55         8.28        34.92        34.29        17.69        36.82 
TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       22.29        34.16        36.20        36.56        39.55        41.62 
TCGA-E9-A1NF TCGA-E9-A1NH TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R4 
       35.24        18.94        24.82        28.27        34.95         6.12 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RE TCGA-E9-A1RF 
       11.15        48.23        45.01        32.09        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A228 TCGA-E9-A229 
       21.27        46.59        47.64        34.45        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A247 
       39.09        38.37        41.03        40.73         0.69        38.99 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
       12.33        29.72        38.07        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW 
       23.84         0.79        25.81        26.40        27.85        12.20 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.90        13.25        16.57        15.68        28.77        25.94 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P8 
       29.85        40.41        52.96        29.82        23.11         7.86 
TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A2FR 
       18.90         6.15        13.94        10.52        14.43        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3E8 TCGA-EW-A423 TCGA-EW-A6S9 TCGA-EW-A6SA 
       52.73        25.91        34.03        10.16        15.22        16.77 
TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA 
       24.99        31.30        33.21         7.40       109.87       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
       79.10        83.34        75.02        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A3XL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A74U 
       86.96       115.69        69.30        62.47        11.84        13.22 
TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A73Z 
        7.10        10.62        32.75        15.32        14.47         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       14.50        19.53        12.36        19.59        17.49        27.91 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RW TCGA-OL-A5RY 
       36.30        58.52        31.99        58.62        36.36        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66O TCGA-PE-A5DC TCGA-PE-A5DD 
       22.32        20.38        23.47        17.36        47.01        64.21 
TCGA-PE-A5DE TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA17 TCGA-UL-AAZ6 
       86.96        18.81        21.07        19.27        13.94        17.03 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R6 
        3.81        11.41        52.96        29.03        16.04       107.05 

$`DEL PEAK 33(17P12) WILD-TYPE`
TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SG TCGA-A1-A0SM TCGA-A2-A04N 
       48.36         9.96         8.52        14.27         7.96       143.15 
TCGA-A2-A04Q TCGA-A2-A04U TCGA-A2-A04X TCGA-A2-A0CL TCGA-A2-A0CP TCGA-A2-A0CQ 
       78.41        87.25        55.43        99.12        92.48        88.60 
TCGA-A2-A0CS TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EP TCGA-A2-A0ER 
       77.19        33.76        61.58       101.72       118.45        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0ST TCGA-A2-A0SU 
       72.00        35.05        34.29        61.94        99.19        54.64 
TCGA-A2-A0T0 TCGA-A2-A0T2 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD TCGA-A2-A0YF 
       17.52         8.38        17.46        18.90        25.28        50.47 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G6 
       49.48        18.61        31.73        60.72        22.45        16.47 
TCGA-A2-A25C TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3XS TCGA-A2-A3XU 
       17.19       105.34        10.59        36.23        33.93        29.98 
TCGA-A2-A3XX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CE TCGA-A7-A0CH 
       47.31        21.30        23.21        21.14        35.31        35.47 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A26J TCGA-A7-A3IY 
       33.11        29.79        20.19        23.61        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 
       10.59        10.29        11.28        13.41        14.70        11.97 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A6VV TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T 
       12.10        10.72        10.29        13.02         1.02        53.06 
TCGA-A8-A06Y TCGA-A8-A07F TCGA-A8-A07J TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U 
       26.01        18.97        12.00        10.98         7.99        24.99 
TCGA-A8-A07Z TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08P TCGA-A8-A08T TCGA-A8-A08Z 
       45.07         0.99        28.96        31.00       112.08        40.01 
TCGA-A8-A091 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09E 
       33.01        41.98         9.99        12.00        50.04        49.05 
TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A9 
       25.02        19.04        15.02         0.99        12.00        27.02 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2FE TCGA-AC-A2FF 
       73.91         5.72         1.48        73.05        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A3HN TCGA-AC-A3QP 
       60.92        87.12        74.14        33.04        16.31        22.19 
TCGA-AC-A3TM TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62V 
       25.05        23.24        24.79        14.53        19.33        11.44 
TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OR TCGA-AN-A03X 
       18.67        13.58         1.68         0.03         1.32         0.33 
TCGA-AN-A03Y TCGA-AN-A049 TCGA-AN-A0AK TCGA-AN-A0AR TCGA-AN-A0FF TCGA-AN-A0FK 
        0.33         0.62         7.36         0.33         5.65         7.00 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AO-A03L 
        7.17         6.90         0.36         0.33         5.33        80.28 
TCGA-AO-A03U TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       58.95        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A125 TCGA-AO-A128 
       50.86        65.10        50.24        55.33        99.25       106.78 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12H TCGA-AO-A1KO 
       90.58        98.27        57.30        48.36        40.57        14.73 
TCGA-AO-A1KP TCGA-AO-A1KT TCGA-AQ-A1H2 TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TS 
       82.62        17.79        15.62        19.20        98.33        84.10 
TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AO 
       75.22        64.83        65.36       103.86        97.68        86.07 
TCGA-AR-A1AP TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N 
       93.90        61.28        86.53        50.89       120.33        99.78 
TCGA-AR-A24Q TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A251 TCGA-AR-A2LH TCGA-AR-A2LN 
      104.28        32.58        98.76        99.62        20.25        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QN TCGA-B6-A0I1 TCGA-B6-A0I2 
       39.39        40.54        57.27        33.30        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IP TCGA-B6-A0RM TCGA-B6-A0RN 
      281.29       275.87        50.70       129.07        78.02       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX 
      162.05       102.77       140.48       188.68        18.35        21.47 
TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
      129.70        28.27        68.94        43.59       101.52        73.51 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A40B TCGA-B6-A40C 
      170.17        37.87         7.07        85.35       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AZ TCGA-BH-A0B7 TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BJ 
       62.93        63.09        84.13        18.21        61.51        21.70 
TCGA-BH-A0BL TCGA-BH-A0BO TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0C3 
       74.89        72.23        53.95        45.57        49.94        89.06 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DO TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       23.44        38.01        17.26         3.22         2.56        38.47 
TCGA-BH-A0DV TCGA-BH-A0E1 TCGA-BH-A0E7 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0GY 
       67.86        15.68        44.81        32.58        24.49        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HI 
       10.78        37.78        53.26        24.56        41.00        20.38 
TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W5 
        2.50        36.85        27.25         5.59        23.93        42.35 
TCGA-BH-A18G TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18R TCGA-BH-A1EN 
        4.90        90.84        72.56        37.74        37.55        67.50 
TCGA-BH-A1ET TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1FB 
       82.85        55.69        49.58        25.81        89.16       120.62 
TCGA-BH-A1FC TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A204 TCGA-BH-A28O 
      114.15        55.00       144.59        72.07        83.31        10.65 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 
        6.44        20.12       109.28        20.88         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12V 
        9.70        21.76         9.44        11.77        11.77        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A1HE TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.66        12.66        12.33         9.67         9.53         0.03 
TCGA-C8-A8HR TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A1JF 
       13.41        13.25        20.58        13.97        14.17        12.03 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JS TCGA-D8-A1JU 
       14.01        18.97        20.09        19.40        12.20        14.70 
TCGA-D8-A1X6 TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XG 
       17.79        25.74        18.15        12.39        17.16        14.73 
TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A27E TCGA-D8-A27F 
       55.30        15.85        15.16        43.04        17.42        16.04 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27V TCGA-D8-A27W 
       14.43        48.03        16.41         1.61        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73X TCGA-E2-A107 TCGA-E2-A108 
       33.37        18.51        21.67        25.22        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A14N TCGA-E2-A14P 
       46.59        40.41        37.51        28.44        47.15        40.96 
TCGA-E2-A14U TCGA-E2-A154 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15J 
       43.33        19.43        22.82        17.29        21.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A1B4 
        9.04        20.58        50.79        19.56        56.94        33.01 
TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IU TCGA-E2-A1L6 
       37.25        37.41        59.18         3.88        11.08        54.18 
TCGA-E2-A1L9 TCGA-E2-A1LB TCGA-E2-A1LK TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A574 
       19.66        75.81         8.75        43.56        30.61        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1R3 
       34.82        32.88        35.77        25.84         9.86         2.56 
TCGA-E9-A1R5 TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A227 TCGA-E9-A22E TCGA-E9-A22H 
        3.02        40.24         1.12        32.05        41.72        40.50 
TCGA-E9-A243 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3Q9 
       20.12         1.94         7.13        24.56         9.47        32.91 
TCGA-E9-A5FK TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1OW TCGA-EW-A1OX 
       26.70        39.72         8.48        18.21        22.82        29.95 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PG 
       41.13        39.78        18.48        30.08        19.99        34.55 
TCGA-EW-A1PH TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-EW-A424 TCGA-GM-A2D9 TCGA-GM-A2DM 
       19.96        22.09        17.49        23.51        59.57       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN 
      101.62        85.35       110.50        38.20        43.73        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LD-A66U 
       72.03        13.55        18.12         2.60        11.57        21.24 
TCGA-LD-A7W6 TCGA-LL-A440 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YN 
       13.28        24.95        29.23        25.05        17.06        14.70 
TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y TCGA-MS-A51U 
       14.79        22.26         2.63        16.08        15.68        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A66H TCGA-OL-A66J 
        2.10        40.08        34.92        28.87        26.70        65.62 
TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ 
       41.92        42.77        26.04        14.07        28.21        19.73 
TCGA-OL-A6VR TCGA-OL-A97C TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZG 
       40.11         8.91         0.16         0.26         9.93        18.48 
TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-V7-A7HQ 
       20.68        13.84        18.87        17.39        17.26        66.84 
TCGA-XX-A899 TCGA-Z7-A8R5 
       15.35       108.07 

  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                        0.16                         0.03 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                      282.90                       281.29 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                      28.205                       26.860 
[1] "0.2 - 282.9 (28.2)" "0.0 - 281.3 (26.9)"
[1] "hr=" "1.2"
D62V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 33(17P12) MUTATED        53       47        1        5       204
  DEL PEAK 33(17P12) WILD-TYPE      36       38        5        1       149
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 33(17P12) MUTATED         162         1         95         15
  DEL PEAK 33(17P12) WILD-TYPE        90         1         59         14
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 33(17P12) MUTATED           42       12         1       8
  DEL PEAK 33(17P12) WILD-TYPE         23        8         0       5
D62V3, multiclass
            clus
vv           DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  STAGE I                            53                           36
  STAGE IA                           47                           38
  STAGE IB                            1                            5
  STAGE II                            5                            1
  STAGE IIA                         204                          149
  STAGE IIB                         162                           90
  STAGE III                           1                            1
  STAGE IIIA                         95                           59
  STAGE IIIB                         15                           14
  STAGE IIIC                         42                           23
  STAGE IV                           12                            8
  STAGE TIS                           1                            0
  STAGE X                             8                            5
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  DEL PEAK 33(17P12) MUTATED   148 395  82  22
  DEL PEAK 33(17P12) WILD-TYPE 128 229  54  18
D62V4, multiclass
    clus
vv   DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  T1                        148                          128
  T2                        395                          229
  T3                         82                           54
  T4                         22                           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  DEL PEAK 33(17P12) MUTATED   307 210  74  48
  DEL PEAK 33(17P12) WILD-TYPE 200 148  45  29
D62V5, multiclass
    clus
vv   DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  N0                        307                          200
  N1                        210                          148
  N2                         74                           45
  N3                         48                           29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V6, binary
                              cls
clus                             0   1
  DEL PEAK 33(17P12) MUTATED   539  14
  DEL PEAK 33(17P12) WILD-TYPE 350   8
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(17P12) MUTATED    539   14
  DEL PEAK 33(17P12) WILD-TYPE  350    8
   clus
vv  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  0                        539                          350
  1                         14                            8
[1] 2 2
[1] FALSE
D62V7, binary
                              cls
clus                             0   1
  DEL PEAK 33(17P12) MUTATED   641   9
  DEL PEAK 33(17P12) WILD-TYPE 427   3
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(17P12) MUTATED    641    9
  DEL PEAK 33(17P12) WILD-TYPE  427    3
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  FEMALE                        641                          427
  MALE                            9                            3
[1] 2 2
[1] FALSE
D62V8, binary
                              cls
clus                             0   1
  DEL PEAK 33(17P12) MUTATED   260 312
  DEL PEAK 33(17P12) WILD-TYPE 169 206
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(17P12) MUTATED    260  312
  DEL PEAK 33(17P12) WILD-TYPE  169  206
     clus
vv    DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  NO                         260                          169
  YES                        312                          206
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  DEL PEAK 33(17P12) MUTATED                            0
  DEL PEAK 33(17P12) WILD-TYPE                          1
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 33(17P12) MUTATED                             489
  DEL PEAK 33(17P12) WILD-TYPE                           281
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 33(17P12) MUTATED                              103
  DEL PEAK 33(17P12) WILD-TYPE                             97
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 33(17P12) MUTATED                     5                     5
  DEL PEAK 33(17P12) WILD-TYPE                   1                     4
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 33(17P12) MUTATED                                 18
  DEL PEAK 33(17P12) WILD-TYPE                               11
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 33(17P12) MUTATED                    6             23
  DEL PEAK 33(17P12) WILD-TYPE                 11             24
D62V9, multiclass
                                  clus
vv                                 DEL PEAK 33(17P12) MUTATED
  INFILTRATING CARCINOMA NOS                                0
  INFILTRATING DUCTAL CARCINOMA                           489
  INFILTRATING LOBULAR CARCINOMA                          103
  MEDULLARY CARCINOMA                                       5
  METAPLASTIC CARCINOMA                                     5
  MIXED HISTOLOGY (PLEASE SPECIFY)                         18
  MUCINOUS CARCINOMA                                        6
  OTHER  SPECIFY                                           23
                                  clus
vv                                 DEL PEAK 33(17P12) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             281
  INFILTRATING LOBULAR CARCINOMA                             97
  MEDULLARY CARCINOMA                                         1
  METAPLASTIC CARCINOMA                                       4
  MIXED HISTOLOGY (PLEASE SPECIFY)                           11
  MUCINOUS CARCINOMA                                         11
  OTHER  SPECIFY                                             24
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 33(17P12) MUTATED                                  1    44
  DEL PEAK 33(17P12) WILD-TYPE                                0    16
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 33(17P12) MUTATED                         115   433
  DEL PEAK 33(17P12) WILD-TYPE                        66   312
D62V11, multiclass
                                  clus
vv                                 DEL PEAK 33(17P12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                    44
  BLACK OR AFRICAN AMERICAN                               115
  WHITE                                                   433
                                  clus
vv                                 DEL PEAK 33(17P12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      16
  BLACK OR AFRICAN AMERICAN                                  66
  WHITE                                                     312
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V12, binary
                              cls
clus                             0   1
  DEL PEAK 33(17P12) MUTATED    23 531
  DEL PEAK 33(17P12) WILD-TYPE  16 344
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(17P12) MUTATED     23  531
  DEL PEAK 33(17P12) WILD-TYPE   16  344
                        clus
vv                       DEL PEAK 33(17P12) MUTATED
  HISPANIC OR LATINO                             23
  NOT HISPANIC OR LATINO                        531
                        clus
vv                       DEL PEAK 33(17P12) WILD-TYPE
  HISPANIC OR LATINO                               16
  NOT HISPANIC OR LATINO                          344
[1] 2 2
[1] FALSE

Clustering(63) Variable = DEL PEAK 34(17Q21.31) MUTATION ANALYSIS
D63V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 34(17Q21.31) MUTATED   312  55
  DEL PEAK 34(17Q21.31) WILD-TYPE 605  92
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                            367                             697 
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                             55                              92 
$`DEL PEAK 34(17Q21.31) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
      131.67        42.81        40.14        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04W 
        7.96        39.32        19.20        18.02        73.84       101.98 
TCGA-A2-A04X TCGA-A2-A0CM TCGA-A2-A0CR TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       55.43        24.79       107.93        98.99       107.93        56.81 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0EQ TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       67.33        34.55        79.76        44.88        50.43        44.28 
TCGA-A2-A0T3 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       49.84        18.21        21.90        18.61        19.33        48.46 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1G1 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       23.77        17.36        19.20        52.47       107.70        42.44 
TCGA-A2-A3XT TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4S1 TCGA-A7-A0CG 
       91.07        35.93        50.83        24.39        26.96        34.29 
TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G 
       30.61        35.67        31.73        31.36        24.26        23.74 
TCGA-A7-A26I TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       21.73        11.97        14.50        21.17        17.92        14.73 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06R 
       10.29         9.37        10.42         8.75         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E 
       31.00        17.03        53.98         9.01        43.00        19.99 
TCGA-A8-A07I TCGA-A8-A07L TCGA-A8-A084 TCGA-A8-A08B TCGA-A8-A08I TCGA-A8-A08J 
       14.01        32.05        15.06        38.01        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A08X TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09I TCGA-A8-A09K 
        9.99        43.00         1.02        50.04        45.07        29.98 
TCGA-A8-A09N TCGA-A8-A09X TCGA-A8-A0A7 TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H 
        1.02        14.01         0.99        38.04         0.95         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2QH TCGA-AC-A3BB TCGA-AC-A3W5 
        1.48        73.05        99.35        33.04        32.45        16.57 
TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AC-A6IX 
       19.79        15.48        16.80        14.96        17.42        12.26 
TCGA-AC-A8OS TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS 
        2.30         0.33         2.96         7.46         0.16         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV 
        0.33         6.44         7.96         7.59         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XW 
        0.36         0.33         0.33         0.33         0.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       80.28        61.35        66.77        29.13        32.78        21.40 
TCGA-AO-A0J5 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JG TCGA-AO-A0JL 
       26.04        21.53        50.70        72.00        26.24        55.33 
TCGA-AO-A0JM TCGA-AO-A129 TCGA-AO-A12D TCGA-AO-A1KR TCGA-AQ-A04J TCGA-AQ-A04L 
       71.80       108.03        64.04        70.39        26.93       130.09 
TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TT 
        5.65         2.56        32.91       140.55        98.33       109.02 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH 
       64.83        55.86       133.22       134.14       107.21       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AN TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AR 
      108.36       101.00        96.00        93.90        99.32        17.23 
TCGA-AR-A1AY TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A252 
       33.73       104.28       112.77        97.84        77.69        93.30 
TCGA-AR-A254 TCGA-AR-A256 TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IH 
       85.64        93.83        12.13       129.57        65.72       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RU TCGA-B6-A0RV 
      233.62       140.88       255.68       212.25       282.90       157.41 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A408 TCGA-B6-A409 TCGA-BH-A0AV TCGA-BH-A0AW 
      101.52       139.17        68.12        18.84        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 
       25.55        81.44        70.22        81.63        84.13        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0C0 
       37.22        32.02        43.53        75.48        76.60        41.75 
TCGA-BH-A0C1 TCGA-BH-A0DG TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DX TCGA-BH-A0DZ 
       44.02        23.44        13.91        78.28        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EE TCGA-BH-A0HB 
        4.41        14.30         9.63        46.19        31.00        26.50 
TCGA-BH-A0HP TCGA-BH-A0HY TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       13.61        50.79        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A1EN 
       35.93        20.12        30.28        55.63        37.55        67.50 
TCGA-BH-A1ES TCGA-BH-A1EU TCGA-BH-A1EY TCGA-BH-A1F6 TCGA-BH-A1FD TCGA-BH-A1FH 
      113.82        42.28        17.69        97.48        33.17        36.92 
TCGA-BH-A1FM TCGA-BH-A1FU TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A5IZ 
       45.63        72.07        38.60        57.83       130.16        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       23.51        11.93        11.77        11.77        12.66        12.66 
TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       12.56        13.51         1.87        12.92         4.11         4.08 
TCGA-C8-A1HF TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HO 
       10.92        11.28         0.16        12.03        10.42        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 
       20.25        12.53        12.36         9.67         0.03         9.50 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A8HP TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        13.02        56.81        20.88        13.25 
TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JG 
       13.48        21.14        14.17        17.49        16.50        53.00 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1X5 TCGA-D8-A1XJ 
       20.09        20.12        19.40        20.38        18.58        21.80 
TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XZ TCGA-D8-A27F 
       14.50        16.41        16.64        12.99        15.32        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27T TCGA-D8-A27V 
       13.45        13.05        13.48         4.80        13.08        12.53 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       38.24        38.60        34.26        31.96        69.34        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A155 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15E 
       63.62        69.96        21.04        14.79        25.05        20.71 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15M TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       18.21        12.92        11.05        76.57        53.62        87.22 
TCGA-E2-A1B5 TCGA-E2-A1II TCGA-E2-A1L7 TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LL 
       32.35        33.70        60.36        75.81        28.90        43.04 
TCGA-E2-A2P5 TCGA-E2-A573 TCGA-E2-A9RU TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 
       26.99        34.92        17.69        36.82        22.29        34.16 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NH TCGA-E9-A1RA 
       36.56        39.55        41.62        35.24        18.94        45.01 
TCGA-E9-A1RB TCGA-E9-A1RF TCGA-E9-A226 TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E 
       32.09         6.58        34.45        39.09        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A5FL TCGA-EW-A1J1 
       40.73         0.69        30.18        30.44         0.79        18.90 
TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PF 
       29.95        40.41        29.82         7.86        18.90        14.43 
TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC 
       19.96        25.91        15.22        16.77        24.99        31.30 
TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DD 
       33.21         7.40       109.87       216.76        79.10        75.02 
TCGA-GM-A2DI TCGA-GM-A2DL TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LD-A74U TCGA-LD-A7W5 
       85.15       115.69         2.60        11.84        13.22         7.10 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A73Z TCGA-LL-A7SZ TCGA-OL-A5D6 
       14.70        14.47        22.26         7.46        19.53        36.30 
TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66O 
       58.52        36.36        22.32        20.38        23.47        17.36 
TCGA-PE-A5DD TCGA-PE-A5DE TCGA-S3-AA14 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB44 
       64.21        86.96        17.39        17.03         3.81        29.03 
TCGA-XX-A89A 
       16.04 

$`DEL PEAK 34(17Q21.31) WILD-TYPE`
TCGA-3C-AAAU TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB 
      129.14        11.44        48.56        48.36         9.96         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SO 
       14.37        43.43        48.10        14.27        47.24        28.01 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V 
       18.21       143.15        78.41       121.94        87.25        63.12 
TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ 
       36.13       136.73        99.12       114.81        92.48        88.60 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       77.19        75.25         5.19        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72        89.36        80.28       118.45        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 
       99.19        54.64        27.12        17.52        17.13         8.38 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX 
       50.47        21.67        49.48        31.73        23.47        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A25C TCGA-A2-A25D 
       22.45        20.25        19.56        16.47        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XU 
      105.34        10.59        36.23        39.65        33.93        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RY 
       32.75        56.28        47.31        50.37         7.30        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CH 
       23.21        21.14        21.90        38.30        35.31        35.47 
TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G 
       37.45        33.11        29.79        20.19        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       29.56        23.80        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.29        11.28        13.41        14.70        14.93        13.74 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06T 
       12.10        10.72        11.05        13.02        13.02        53.06 
TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J 
       29.03        26.01         1.02        18.97        18.97        12.00 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
        9.99        10.98         8.98         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08F 
       45.07        36.95        13.02         0.99        28.96        33.01 
TCGA-A8-A08G TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A08T 
       19.96        31.00        31.00         0.99        33.01       112.08 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 
       40.01        33.01        30.97        17.95        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09E TCGA-A8-A09M TCGA-A8-A09Q 
        9.99         9.99        12.00        49.05        33.07        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 
        8.98        19.04        15.02         0.99        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E TCGA-AC-A23G 
       13.02        21.04        27.02        17.03        22.95        73.91 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       74.14        19.33        14.66         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        24.13        25.05        14.99        23.24        24.79 
TCGA-AC-A4ZE TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A6IV 
       29.26        14.53        19.33        11.44        13.71        18.67 
TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ 
       13.58         1.68         8.22         0.03        20.19         1.12 
TCGA-AC-A8OR TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04C 
        1.32         0.33         0.33         0.23         0.62         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AR TCGA-AN-A0FF TCGA-AN-A0FK 
        1.71         9.96         7.36         0.33         5.65         7.00 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN 
        7.17         6.90         0.33         0.33         5.36         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XS TCGA-AN-A0XV TCGA-AO-A03O TCGA-AO-A03P 
       12.33         0.30         0.33         5.33        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J7 
       68.75        47.87        58.95        52.18        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JI 
       22.36        53.03        50.86        76.77        65.10        50.24 
TCGA-AO-A0JJ TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A12A 
       62.04       115.27        99.25       108.72       106.78        90.58 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        57.30        48.36        41.62        40.57        14.73 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A1H2 
       82.62        61.87         0.53        17.79        24.79        15.62 
TCGA-AQ-A1H3 TCGA-AQ-A7U7 TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TV TCGA-AR-A0TW 
       32.52        19.20         5.26        84.10        75.22        98.93 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      107.24        65.36        83.87       103.86        97.68        98.33 
TCGA-AR-A1AO TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       86.07        37.81        94.29        61.28        86.53        86.43 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
      160.90        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24T TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
        2.76       105.27       105.30        32.58        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       89.00        99.62        71.05       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       54.21        66.15        63.62        38.17        39.39        40.54 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       57.27        73.35        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IK 
      143.38       281.29       275.87        50.70       146.50        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RI 
      127.33        84.59       165.76       129.07        68.45       234.28 
TCGA-B6-A0RL TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
       81.17        78.02       263.28       162.05       102.77       140.48 
TCGA-B6-A0RS TCGA-B6-A0RT TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      100.70        89.46        97.48       188.68        79.63        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.47       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A3ZX 
       68.94        58.88        43.59        73.51       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
        7.07        85.35        70.16       103.63        71.15        62.93 
TCGA-BH-A0AZ TCGA-BH-A0B2 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0BD TCGA-BH-A0BG 
       63.09        40.83        39.55        39.16        18.21        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS 
       21.70        74.89        61.68        72.23        74.14        53.95 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C3 TCGA-BH-A0C7 
       45.57        49.94        77.95        49.05        89.06        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DO TCGA-BH-A0DP 
       45.83        77.98        38.01        29.98        17.26        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0E1 TCGA-BH-A0E7 
        3.22         2.56        38.47        67.86        15.68        44.81 
TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       32.58        24.49        24.43        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       37.78        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       20.38         5.85         2.50        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A18K 
       27.25         5.59        23.93        24.95        42.35        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       26.66        72.56        37.74        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EO TCGA-BH-A1ET TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
       51.16        91.99        82.85        12.00        55.69        49.58 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC 
       25.81        31.53        89.16        24.62       120.62       114.15 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR 
       74.73       122.89        63.35        55.00        72.07       144.59 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       28.14        26.14        83.31        10.65         6.44        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
       10.52       109.28        20.88         9.63         5.26         9.70 
TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12V 
       18.87        21.76         9.44        11.77        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A134 TCGA-C8-A1HE 
       12.66        12.66        48.53         3.16        12.59        12.33 
TCGA-C8-A1HG TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A274 
       11.34        12.33        12.95        12.95         8.28         9.53 
TCGA-C8-A27A TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A141 
       24.56        12.95        12.49        13.41        19.46        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       13.97        14.17        19.20        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JP 
       18.90        12.03        14.01        18.97        20.09        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       12.20        13.32        14.70        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF 
       23.90        27.58        18.15        12.39        17.16        15.22 
TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS 
       14.73        19.92        17.69        55.30        15.85        16.31 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       15.16        43.04        16.54        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P 
       14.14        17.42        14.43        48.03        16.41         1.61 
TCGA-D8-A27R TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U 
       10.09        12.26        33.37        18.51        21.67        16.18 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       12.66        25.22        43.00        34.42        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       40.41        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14W 
       44.68        40.96        33.17        75.98        43.33        32.02 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       23.24        19.43        23.87        23.34        22.82        17.29 
TCGA-E2-A15F TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O 
       21.63        55.63        53.92         9.04        20.58        50.79 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1B4 TCGA-E2-A1B6 
       19.56        56.94        14.07        51.39        33.01        28.50 
TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       16.47        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LG TCGA-E2-A1LH 
       54.18        73.64        19.66        24.59        50.07       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
      102.61         8.75        34.55        43.56         8.28        30.61 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N9 TCGA-E9-A1NE 
       38.76        34.29        34.82        32.88        36.20        35.77 
TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       25.84         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RD 
        6.12         3.02        11.15        48.23        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 
       46.65        21.27        46.59        47.64        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 
       37.74        38.37        40.50        20.12        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP 
       32.91        23.90        23.84        26.70        25.81        26.40 
TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 
       27.85        12.20        39.72         8.48        18.21        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OY 
       16.57        15.68        28.77        25.94        22.82        29.85 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        52.96        23.11        18.48        30.08 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A2FR 
       19.99         6.15        13.94        10.52        34.55        55.00 
TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 
       52.73        22.09        34.03        17.49        10.16        23.51 
TCGA-GM-A2D9 TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A2DM 
       59.57        83.34        70.85        72.10        86.96       106.06 
TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      101.62        85.35       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YX 
       66.38        72.03        13.55        18.12        62.47        11.57 
TCGA-LD-A66U TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 
       21.24        13.28        10.62        24.95        32.75        29.23 
TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YP TCGA-LL-A6FQ TCGA-LL-A6FR 
       25.05        17.06        15.32        14.79         2.63        16.08 
TCGA-LL-A73Y TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-LL-A9Q3 TCGA-LQ-A4E4 
       15.68        14.50        12.36        19.59        17.49        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV 
       22.39         2.10        31.99        58.62        40.08        34.92 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L 
       28.87        24.72        26.70        65.62        41.92        42.77 
TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C 
       26.04        14.07        28.21        19.73        40.11         8.91 
TCGA-PE-A5DC TCGA-PL-A8LX TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG 
       47.01         0.16         0.26         9.93        18.81        18.48 
TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA15 
       21.07        20.68        19.27        13.84        18.87        17.26 
TCGA-S3-AA17 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 TCGA-Z7-A8R5 
       13.94        66.84        11.41        52.96        15.35       108.07 
TCGA-Z7-A8R6 
      107.05 

  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                           0.03                            0.03 
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                         282.90                          281.29 
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                          26.93                           28.14 
[1] "0.0 - 282.9 (26.9)" "0.0 - 281.3 (28.1)"
[1] "hr=" "1.1"
D63V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 34(17Q21.31) MUTATED        29       23        1        2       127
  DEL PEAK 34(17Q21.31) WILD-TYPE      60       62        5        4       226
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 34(17Q21.31) MUTATED          86         0         57          6
  DEL PEAK 34(17Q21.31) WILD-TYPE       166         2         97         23
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 34(17Q21.31) MUTATED           23       10         1       3
  DEL PEAK 34(17Q21.31) WILD-TYPE         42       10         0      10
D63V3, multiclass
            clus
vv           DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  STAGE I                               29                              60
  STAGE IA                              23                              62
  STAGE IB                               1                               5
  STAGE II                               2                               4
  STAGE IIA                            127                             226
  STAGE IIB                             86                             166
  STAGE III                              0                               2
  STAGE IIIA                            57                              97
  STAGE IIIB                             6                              23
  STAGE IIIC                            23                              42
  STAGE IV                              10                              10
  STAGE TIS                              1                               0
  STAGE X                                3                              10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  DEL PEAK 34(17Q21.31) MUTATED    78 232  45  14
  DEL PEAK 34(17Q21.31) WILD-TYPE 198 392  91  26
D63V4, multiclass
    clus
vv   DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  T1                            78                             198
  T2                           232                             392
  T3                            45                              91
  T4                            14                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  DEL PEAK 34(17Q21.31) MUTATED   174 112  51  28
  DEL PEAK 34(17Q21.31) WILD-TYPE 333 246  68  49
D63V5, multiclass
    clus
vv   DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  N0                           174                             333
  N1                           112                             246
  N2                            51                              68
  N3                            28                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V6, binary
                                 cls
clus                                0   1
  DEL PEAK 34(17Q21.31) MUTATED   311  10
  DEL PEAK 34(17Q21.31) WILD-TYPE 578  12
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(17Q21.31) MUTATED    311   10
  DEL PEAK 34(17Q21.31) WILD-TYPE  578   12
   clus
vv  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  0                           311                             578
  1                            10                              12
[1] 2 2
[1] FALSE
D63V7, binary
                                 cls
clus                                0   1
  DEL PEAK 34(17Q21.31) MUTATED   368   3
  DEL PEAK 34(17Q21.31) WILD-TYPE 700   9
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(17Q21.31) MUTATED    368    3
  DEL PEAK 34(17Q21.31) WILD-TYPE  700    9
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  FEMALE                           368                             700
  MALE                               3                               9
[1] 2 2
[1] FALSE
D63V8, binary
                                 cls
clus                                0   1
  DEL PEAK 34(17Q21.31) MUTATED   146 177
  DEL PEAK 34(17Q21.31) WILD-TYPE 283 341
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(17Q21.31) MUTATED    146  177
  DEL PEAK 34(17Q21.31) WILD-TYPE  283  341
     clus
vv    DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  NO                            146                             283
  YES                           177                             341
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  DEL PEAK 34(17Q21.31) MUTATED                            0
  DEL PEAK 34(17Q21.31) WILD-TYPE                          1
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 34(17Q21.31) MUTATED                             297
  DEL PEAK 34(17Q21.31) WILD-TYPE                           473
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 34(17Q21.31) MUTATED                               39
  DEL PEAK 34(17Q21.31) WILD-TYPE                            161
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 34(17Q21.31) MUTATED                     4                     5
  DEL PEAK 34(17Q21.31) WILD-TYPE                   2                     4
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 34(17Q21.31) MUTATED                                 11
  DEL PEAK 34(17Q21.31) WILD-TYPE                               18
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 34(17Q21.31) MUTATED                    1             13
  DEL PEAK 34(17Q21.31) WILD-TYPE                 16             34
D63V9, multiclass
                                  clus
vv                                 DEL PEAK 34(17Q21.31) MUTATED
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              297
  INFILTRATING LOBULAR CARCINOMA                              39
  MEDULLARY CARCINOMA                                          4
  METAPLASTIC CARCINOMA                                        5
  MIXED HISTOLOGY (PLEASE SPECIFY)                            11
  MUCINOUS CARCINOMA                                           1
  OTHER  SPECIFY                                              13
                                  clus
vv                                 DEL PEAK 34(17Q21.31) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     1
  INFILTRATING DUCTAL CARCINOMA                                473
  INFILTRATING LOBULAR CARCINOMA                               161
  MEDULLARY CARCINOMA                                            2
  METAPLASTIC CARCINOMA                                          4
  MIXED HISTOLOGY (PLEASE SPECIFY)                              18
  MUCINOUS CARCINOMA                                            16
  OTHER  SPECIFY                                                34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 34(17Q21.31) MUTATED                                  0    34
  DEL PEAK 34(17Q21.31) WILD-TYPE                                1    26
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 34(17Q21.31) MUTATED                          75   233
  DEL PEAK 34(17Q21.31) WILD-TYPE                       106   512
D63V11, multiclass
                                  clus
vv                                 DEL PEAK 34(17Q21.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       34
  BLACK OR AFRICAN AMERICAN                                   75
  WHITE                                                      233
                                  clus
vv                                 DEL PEAK 34(17Q21.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         26
  BLACK OR AFRICAN AMERICAN                                    106
  WHITE                                                        512
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V12, binary
                                 cls
clus                                0   1
  DEL PEAK 34(17Q21.31) MUTATED    13 300
  DEL PEAK 34(17Q21.31) WILD-TYPE  26 575
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(17Q21.31) MUTATED     13  300
  DEL PEAK 34(17Q21.31) WILD-TYPE   26  575
                        clus
vv                       DEL PEAK 34(17Q21.31) MUTATED
  HISPANIC OR LATINO                                13
  NOT HISPANIC OR LATINO                           300
                        clus
vv                       DEL PEAK 34(17Q21.31) WILD-TYPE
  HISPANIC OR LATINO                                  26
  NOT HISPANIC OR LATINO                             575
[1] 2 2
[1] FALSE

Clustering(64) Variable = DEL PEAK 35(18Q23) MUTATION ANALYSIS
D64V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 35(18Q23) MUTATED   297  50
  DEL PEAK 35(18Q23) WILD-TYPE 620  97
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                         347                          717 
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                          50                           97 
$`DEL PEAK 35(18Q23) MUTATED`
TCGA-3C-AALI TCGA-A1-A0SD TCGA-A1-A0SI TCGA-A1-A0SO TCGA-A2-A04P TCGA-A2-A04Q 
      131.67        14.37        20.88        28.01        18.02        78.41 
TCGA-A2-A04U TCGA-A2-A04X TCGA-A2-A0CM TCGA-A2-A0CU TCGA-A2-A0CW TCGA-A2-A0D0 
       87.25        55.43        24.79         5.19       107.93        67.33 
TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0SV TCGA-A2-A0SX 
       89.36       118.45        34.29        31.82        27.12        50.43 
TCGA-A2-A0SY TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YH 
       44.28        20.52        20.75        18.21        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW 
       49.48        19.33        48.46        31.73        23.77        17.36 
TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A3XU 
       60.72        19.20        42.44        17.19        18.15        29.98 
TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CG TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13F 
       26.96        21.90        34.29        35.67        31.73        25.15 
TCGA-A7-A26F TCGA-A7-A3J1 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF 
       24.26        11.28        14.93        13.74        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06R 
       14.73        12.10        10.29         9.37        10.42        17.98 
TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A07G TCGA-A8-A07P 
       29.03        31.00        26.01        17.03        18.97        10.98 
TCGA-A8-A07R TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A08B TCGA-A8-A08F 
        8.98         9.99        15.06        36.95        38.01        33.01 
TCGA-A8-A08J TCGA-A8-A08R TCGA-A8-A092 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       37.05         0.99        30.97         9.99        12.00        50.04 
TCGA-A8-A09E TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A6 
       49.05         1.02        25.02        14.01        19.04        21.04 
TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A2FF TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
        0.95         5.72        90.71        14.66        32.45         6.48 
TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A5EH TCGA-AC-A62V TCGA-AC-A6IX 
       16.57        19.79        15.48        16.80        11.44        12.26 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A041 
        0.03        20.19         1.12         2.30         0.33         0.23 
TCGA-AN-A04A TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0FL TCGA-AN-A0FV 
        2.96         7.36         7.46         0.16         7.59         0.33 
TCGA-AN-A0FW TCGA-AN-A0FZ TCGA-AN-A0XN TCGA-AN-A0XP TCGA-AN-A0XU TCGA-AO-A03L 
        0.36         0.33         0.33         0.30         0.33        80.28 
TCGA-AO-A03N TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0JA 
       66.77        32.78        52.18        37.48        20.32        21.53 
TCGA-AO-A0JB TCGA-AO-A0JD TCGA-AO-A0JJ TCGA-AO-A124 TCGA-AO-A12D TCGA-AO-A12E 
       50.70        72.00        62.04       115.27        64.04        57.30 
TCGA-AO-A12F TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 
       48.36        17.79        24.79        26.93       130.09         5.65 
TCGA-AQ-A1H2 TCGA-AQ-A54O TCGA-AR-A0TP TCGA-AR-A0TT TCGA-AR-A0U1 TCGA-AR-A1AP 
       15.62        32.91       140.55       109.02       133.22        93.90 
TCGA-AR-A1AV TCGA-AR-A24H TCGA-AR-A24M TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24V 
       61.28       160.90       120.33       112.77        97.84       105.30 
TCGA-AR-A24W TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A2LN 
       32.58        89.00        99.62        93.30        71.05        38.17 
TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QQ TCGA-B6-A0IK TCGA-B6-A0IO TCGA-B6-A0RE 
       57.27        73.35        10.59        18.77       165.76       255.68 
TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RP TCGA-B6-A0RS TCGA-B6-A0WV TCGA-B6-A0WW 
       68.45        81.17       102.77       100.70        79.63        18.35 
TCGA-B6-A0WY TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A402 TCGA-B6-A409 
      113.79       101.52        73.51       170.17        70.16        18.84 
TCGA-BH-A0AZ TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BG 
       63.09        39.55        39.16        37.22        18.21        61.51 
TCGA-BH-A0BP TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C7 
       75.48        45.57        77.95        49.05        41.75        90.97 
TCGA-BH-A0DH TCGA-BH-A0DQ TCGA-BH-A0GY TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       38.01         3.22        30.35        23.08        41.00        52.96 
TCGA-BH-A0HI TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0W3 TCGA-BH-A0WA TCGA-BH-A18F 
       20.38        12.89        27.25        23.93        23.05        32.91 
TCGA-BH-A18K TCGA-BH-A18Q TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       90.84        55.63        51.39        51.16        67.50        91.99 
TCGA-BH-A1EV TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FM 
       12.00        17.69        25.81        97.48        24.62        45.63 
TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A5J0 TCGA-BH-A8FZ 
       28.14        38.60        83.31       130.16        23.51        18.87 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A134 
       11.77        12.66        12.66        12.56         3.16        12.59 
TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.92         4.08        12.33        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HO TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       12.33        12.33        12.36        12.95         8.28         9.67 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
        9.53         0.03         9.50        24.56        14.43        33.99 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A142 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 
       56.81        20.88        13.97        21.14        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       16.50        15.78        18.90        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1X9 
       20.09        20.09        20.38        21.01        18.58        23.90 
TCGA-D8-A1XA TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XU TCGA-D8-A1XY TCGA-D8-A1Y3 
       27.58        21.80        19.92        12.99        16.54        14.14 
TCGA-D8-A27F TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A3Z6 TCGA-D8-A73U 
       16.04        13.48         4.80        10.09        18.51        16.18 
TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A14O TCGA-E2-A14Q 
       34.42        46.59        40.11        28.44        44.68        38.24 
TCGA-E2-A14R TCGA-E2-A14V TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A154 TCGA-E2-A159 
       38.60        34.26        63.62        69.96        19.43        25.05 
TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A1BD TCGA-E2-A1IH TCGA-E2-A1IN TCGA-E2-A1IO 
       23.34        20.71        37.25        33.73        22.19        60.99 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 
       28.90       106.75       102.61         8.75        43.04        34.55 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A9RU TCGA-E9-A1N4 TCGA-E9-A1NA TCGA-E9-A1ND 
       34.92        38.76        17.69        32.88        36.56        41.62 
TCGA-E9-A1NF TCGA-E9-A1NH TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
       35.24        18.94         6.58        21.27        46.59        47.64 
TCGA-E9-A22E TCGA-E9-A248 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3QA TCGA-E9-A54Y 
       41.72         1.94        12.33        29.72        30.18        23.84 
TCGA-E9-A5FL TCGA-EW-A1IW TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1OW TCGA-EW-A1OY 
        0.79        12.20        18.21        18.90        22.82        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P3 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PF TCGA-EW-A2FR 
       40.41        52.96         7.86        18.90        14.43        55.00 
TCGA-EW-A2FV TCGA-EW-A423 TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DL 
       25.91        10.16        33.21         7.40       109.87       115.69 
TCGA-HN-A2NL TCGA-JL-A3YW TCGA-LD-A74U TCGA-LD-A9QF TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        11.84        13.22        10.62        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FR TCGA-LL-A9Q3 
       15.32        14.47        14.79        22.26        16.08        17.49 
TCGA-LQ-A4E4 TCGA-OL-A5D6 TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66N TCGA-OL-A6VO 
       27.91        36.30        36.36        20.38        26.04        28.21 
TCGA-OL-A6VQ TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LZ 
       19.73        47.01        64.21        86.96         0.16         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZH TCGA-UU-A93S TCGA-WT-AB44 TCGA-XX-A89A 
       18.81        21.07         3.81        29.03        16.04 

$`DEL PEAK 35(18Q23) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 
      129.14        42.81        40.14        11.44        48.56        48.36 
TCGA-5T-A9QA TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        9.96         8.52        43.43        48.10        14.27        47.24 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP TCGA-A1-A0SQ 
       13.68        31.79         7.96        39.32        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04Y 
      143.15       121.94        73.84        63.12       101.98        36.13 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR 
      136.73        99.12       114.81        92.48        88.60       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 
       77.19        75.25        98.99        56.81        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0ER 
       61.58        25.22       101.72        80.28        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       72.00        35.05        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       54.64        44.88        17.52        17.13         8.38        49.84 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YJ 
       17.46        18.90        32.55        25.28        50.47        18.61 
TCGA-A2-A1FV TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       23.47        22.45        20.25        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
      107.70       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       91.07        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 
       50.83         7.30        24.39        21.30        23.21        21.14 
TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB 
       38.30        35.31        35.47        30.61        37.45        33.11 
TCGA-A7-A0DC TCGA-A7-A13E TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26G 
       29.79        20.19        23.61        29.56        31.36        23.74 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SD TCGA-A7-A5ZW 
       10.29        13.41        14.70        11.97        14.50        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06T 
       11.05         8.75        13.02        13.02         1.02        53.06 
TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F 
        1.02        53.98         9.01        43.00        19.99        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07S TCGA-A8-A07U 
       14.01        12.00        32.05         9.99         7.99        24.99 
TCGA-A8-A07Z TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I 
       45.07        13.02         0.99        28.96        19.96        12.00 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X 
        9.99        31.00        31.00        33.01       112.08        43.00 
TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       40.01        33.01        17.95        41.98        12.00         9.99 
TCGA-A8-A09C TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09R TCGA-A8-A09T 
        1.02        45.07        29.98        33.07         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 
       15.02         0.99        12.00        13.02         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK 
       17.03        38.04        22.95        73.91         1.48        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       99.35        40.57        86.66        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       74.14        33.04        19.33        16.31        14.83        22.19 
TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE 
       24.13        25.05        14.99        23.24        24.79        29.26 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV 
       14.53        19.33        14.96        13.71        17.42        18.67 
TCGA-AC-A6IW TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OR TCGA-AN-A03Y TCGA-AN-A046 
       13.58         1.68         8.22         1.32         0.33         0.33 
TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AR TCGA-AN-A0AS 
        0.62         1.78         1.71         9.96         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FN 
        0.33         6.44         5.65         7.96         7.00         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XO 
        6.90         7.04         0.33         0.33         5.36        12.33 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M 
        0.33         0.33         0.33         5.33         5.59        61.35 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        47.87        58.95        29.13 
TCGA-AO-A0J3 TCGA-AO-A0J5 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JC TCGA-AO-A0JE 
       21.40        26.04        22.36        53.03        50.86        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A125 
       65.10        26.24        50.24        55.33        71.80        99.25 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12G 
      108.72       106.78       108.03        90.58        98.27        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS 
       40.57        14.73        82.62        61.87        70.39         0.53 
TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A7U7 TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS 
       32.52         2.56        19.20        98.33         5.26        84.10 
TCGA-AR-A0TV TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
       75.22        98.93        64.83        55.86       107.24        65.36 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
       83.87       134.14       107.21       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ 
      103.86        97.68        98.33        96.00        86.07        99.32 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       17.23        37.81        94.29        86.53        86.43        33.73 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       50.89        94.22        99.78       118.59         2.76       104.28 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A254 TCGA-AR-A256 
      105.27        77.69        98.76        98.66        85.64        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM 
      166.42        20.25        86.53        54.21        66.15        63.62 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I1 TCGA-B6-A0I2 
       39.39        40.54        33.30        38.96        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
      281.29        12.13       275.87       129.57        50.70        65.72 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IP 
      146.50       112.37       233.62       127.33        84.59       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO 
      140.88       212.25       234.28        78.02       263.28       162.05 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.48        89.46       282.90       157.41        97.48       188.68 
TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
       21.47       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KN TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       58.88        43.59       139.17        37.87         7.07        85.35 
TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       68.12       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 
       25.55        81.44        40.83        70.22        81.63        84.13 
TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       51.68        32.02        43.53        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0C1 
       72.23        74.14        76.60        53.95        49.94        44.02 
TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK 
       89.06        45.83        77.98        23.44        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       78.28        17.26        15.65         2.56        38.47        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
       44.81        46.19        32.58        24.49        31.00        24.43 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0HB 
       10.78        15.16        37.78        53.26        24.56        26.50 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HW TCGA-BH-A0HY 
        5.85         2.50        13.61        36.85        51.32        50.79 
TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18G TCGA-BH-A18I 
        5.59        24.95        42.35        44.81         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R 
       20.12        26.66        72.56        37.74        30.28        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EW 
       66.05         7.36       113.82        82.85        42.28        55.69 
TCGA-BH-A1EX TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD 
       49.58        31.53        89.16       120.62       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN 
       74.73       122.89        36.92        63.35        55.00        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q 
      144.59        72.07        26.14        57.83        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A6R8 
       20.12        10.52       109.28        20.88        18.64         9.63 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M 
        5.26         9.70        21.76         9.44        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y 
       11.77        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A137 TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HL 
       13.51         1.87         4.11        10.92        11.34        10.42 
TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A3M8 TCGA-C8-A8HP TCGA-C8-A8HQ 
       12.95        20.25        12.53        12.95        13.02        12.49 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 
       13.41        19.46        13.25        20.58        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JF TCGA-D8-A1JK TCGA-D8-A1JM 
       19.20        55.50        18.15        12.03        20.12        19.40 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       12.20        13.32        14.70        17.79        16.73        25.74 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK 
       18.15        12.39        17.16        15.22        14.73        14.50 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        55.30        16.41        15.85        16.31        16.64 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       15.16        43.04        15.32        15.52         9.93        14.24 
TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       17.42        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A4Z1 
        1.61        13.08        12.53        12.26        33.37        21.67 
TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B 
       12.66        25.22        43.00        27.52        40.41        37.51 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       28.87        47.15        40.96        33.17        75.98        43.33 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A155 
       32.02        31.96        69.34        18.51        23.24        21.04 
TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G 
       23.87        14.79        22.82        17.29        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       50.79        19.56        56.94        14.07        51.39        76.57 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       53.62        87.22        33.01        32.35        28.50        16.47 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       77.65        37.41        70.36        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 TCGA-E2-A1L9 
        3.88        11.08        54.18        60.36        73.64        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-E2-A3DX TCGA-E2-A56Z 
       24.59        75.81        50.07        26.99        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1N8 
       30.61        34.29        34.82        36.82        22.29        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ 
       36.20        39.55        35.77        25.84         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       28.27        34.95         2.56         6.12         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
       48.23        45.01        32.09        40.24         1.12        46.65 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.03        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 
        7.13        24.56         9.47        38.07        32.91        30.44 
TCGA-E9-A54X TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IX 
       23.90        26.70        25.81        26.40        27.85        39.72 
TCGA-EW-A1IY TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV 
        8.48        13.25        16.57        15.68        28.77        25.94 
TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       29.95        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
       30.08        19.99         6.15        13.94        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A424 
       19.96        52.73        22.09        34.03        17.49        23.51 
TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GM-A2D9 TCGA-GM-A2DA 
       15.22        16.77        24.99        31.30        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
       79.10        83.34        75.02        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LL-A440 
       62.47        11.57        21.24         7.10        13.28        24.95 
TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YN TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z 
       29.23        25.05        14.70         2.63        15.68         7.46 
TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-MS-A51U TCGA-OK-A5Q2 
       14.50        19.53        12.36        19.59        22.39         2.10 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX 
       58.52        31.99        58.62        40.08        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       24.72        22.32        26.70        23.47        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VR TCGA-OL-A97C TCGA-PL-A8LY 
       42.77        17.36        14.07        40.11         8.91         0.26 
TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 
       18.48        20.68        19.27        13.84        18.87        17.39 
TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 
       17.26        13.94        17.03        66.84        11.41        52.96 
TCGA-XX-A899 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35       108.07       107.05 

  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                        0.03                         0.26 
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                      255.68                       282.90 
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                       23.77                        30.61 
[1] "0.0 - 255.7 (23.8)" "0.3 - 282.9 (30.6)"
[1] "hr=" "1.4"
D64V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 35(18Q23) MUTATED        23       29        0        0       113
  DEL PEAK 35(18Q23) WILD-TYPE      66       56        6        6       240
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 35(18Q23) MUTATED          77         0         56         15
  DEL PEAK 35(18Q23) WILD-TYPE       175         2         98         14
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 35(18Q23) MUTATED           29        6         0       3
  DEL PEAK 35(18Q23) WILD-TYPE         36       14         1      10
D64V3, multiclass
            clus
vv           DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  STAGE I                            23                           66
  STAGE IA                           29                           56
  STAGE IB                            0                            6
  STAGE II                            0                            6
  STAGE IIA                         113                          240
  STAGE IIB                          77                          175
  STAGE III                           0                            2
  STAGE IIIA                         56                           98
  STAGE IIIB                         15                           14
  STAGE IIIC                         29                           36
  STAGE IV                            6                           14
  STAGE TIS                           0                            1
  STAGE X                             3                           10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  DEL PEAK 35(18Q23) MUTATED    75 215  43  20
  DEL PEAK 35(18Q23) WILD-TYPE 201 409  93  20
D64V4, multiclass
    clus
vv   DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  T1                         75                          201
  T2                        215                          409
  T3                         43                           93
  T4                         20                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  DEL PEAK 35(18Q23) MUTATED   160 107  49  31
  DEL PEAK 35(18Q23) WILD-TYPE 347 251  70  46
D64V5, multiclass
    clus
vv   DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  N0                        160                          347
  N1                        107                          251
  N2                         49                           70
  N3                         31                           46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V6, binary
                              cls
clus                             0   1
  DEL PEAK 35(18Q23) MUTATED   292   6
  DEL PEAK 35(18Q23) WILD-TYPE 597  16
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(18Q23) MUTATED    292    6
  DEL PEAK 35(18Q23) WILD-TYPE  597   16
   clus
vv  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  0                        292                          597
  1                          6                           16
[1] 2 2
[1] FALSE
D64V7, binary
                              cls
clus                             0   1
  DEL PEAK 35(18Q23) MUTATED   349   5
  DEL PEAK 35(18Q23) WILD-TYPE 719   7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(18Q23) MUTATED    349    5
  DEL PEAK 35(18Q23) WILD-TYPE  719    7
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  FEMALE                        349                          719
  MALE                            5                            7
[1] 2 2
[1] FALSE
D64V8, binary
                              cls
clus                             0   1
  DEL PEAK 35(18Q23) MUTATED   131 178
  DEL PEAK 35(18Q23) WILD-TYPE 298 340
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(18Q23) MUTATED    131  178
  DEL PEAK 35(18Q23) WILD-TYPE  298  340
     clus
vv    DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  NO                         131                          298
  YES                        178                          340
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  DEL PEAK 35(18Q23) MUTATED                            1
  DEL PEAK 35(18Q23) WILD-TYPE                          0
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 35(18Q23) MUTATED                             274
  DEL PEAK 35(18Q23) WILD-TYPE                           496
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 35(18Q23) MUTATED                               54
  DEL PEAK 35(18Q23) WILD-TYPE                            146
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 35(18Q23) MUTATED                     3                     5
  DEL PEAK 35(18Q23) WILD-TYPE                   3                     4
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 35(18Q23) MUTATED                                  8
  DEL PEAK 35(18Q23) WILD-TYPE                               21
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 35(18Q23) MUTATED                    0              8
  DEL PEAK 35(18Q23) WILD-TYPE                 17             39
D64V9, multiclass
                                  clus
vv                                 DEL PEAK 35(18Q23) MUTATED
  INFILTRATING CARCINOMA NOS                                1
  INFILTRATING DUCTAL CARCINOMA                           274
  INFILTRATING LOBULAR CARCINOMA                           54
  MEDULLARY CARCINOMA                                       3
  METAPLASTIC CARCINOMA                                     5
  MIXED HISTOLOGY (PLEASE SPECIFY)                          8
  MUCINOUS CARCINOMA                                        0
  OTHER  SPECIFY                                            8
                                  clus
vv                                 DEL PEAK 35(18Q23) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             496
  INFILTRATING LOBULAR CARCINOMA                            146
  MEDULLARY CARCINOMA                                         3
  METAPLASTIC CARCINOMA                                       4
  MIXED HISTOLOGY (PLEASE SPECIFY)                           21
  MUCINOUS CARCINOMA                                         17
  OTHER  SPECIFY                                             39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 35(18Q23) MUTATED                                  0    28
  DEL PEAK 35(18Q23) WILD-TYPE                                1    32
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 35(18Q23) MUTATED                          59   235
  DEL PEAK 35(18Q23) WILD-TYPE                       122   510
D64V11, multiclass
                                  clus
vv                                 DEL PEAK 35(18Q23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                    28
  BLACK OR AFRICAN AMERICAN                                59
  WHITE                                                   235
                                  clus
vv                                 DEL PEAK 35(18Q23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      32
  BLACK OR AFRICAN AMERICAN                                 122
  WHITE                                                     510
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V12, binary
                              cls
clus                             0   1
  DEL PEAK 35(18Q23) MUTATED    12 289
  DEL PEAK 35(18Q23) WILD-TYPE  27 586
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(18Q23) MUTATED     12  289
  DEL PEAK 35(18Q23) WILD-TYPE   27  586
                        clus
vv                       DEL PEAK 35(18Q23) MUTATED
  HISPANIC OR LATINO                             12
  NOT HISPANIC OR LATINO                        289
                        clus
vv                       DEL PEAK 35(18Q23) WILD-TYPE
  HISPANIC OR LATINO                               27
  NOT HISPANIC OR LATINO                          586
[1] 2 2
[1] FALSE

Clustering(65) Variable = DEL PEAK 36(19P13.3) MUTATION ANALYSIS
D65V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 36(19P13.3) MUTATED   303  56
  DEL PEAK 36(19P13.3) WILD-TYPE 614  91
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                           359                            705 
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                            56                             91 
$`DEL PEAK 36(19P13.3) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-4H-AAAK TCGA-5T-A9QA TCGA-A1-A0SD TCGA-A1-A0SJ 
      131.67        42.81        11.44         9.96        14.37        13.68 
TCGA-A1-A0SK TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04X 
       31.79        18.21        18.02        73.84        87.25        55.43 
TCGA-A2-A0CM TCGA-A2-A0CW TCGA-A2-A0D0 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0SX 
       24.79       107.93        67.33        25.22        80.28        50.43 
TCGA-A2-A0T3 TCGA-A2-A0T7 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ 
       49.84        20.75        18.21        21.90        21.67        18.61 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1G0 TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A3XT 
       23.77        17.36        20.25        18.15       105.34        91.07 
TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CE 
       47.31        50.37        50.83        26.96        21.90        35.31 
TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26G TCGA-A7-A26I TCGA-A7-A2KD 
       35.67        31.73        20.19        23.74        21.73        22.32 
TCGA-A7-A3IZ TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       10.59        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06R 
       10.29         9.37        10.42         8.75         1.02        17.98 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       53.06        29.03        31.00         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R 
        9.01        18.97        32.05         9.99        10.98         8.98 
TCGA-A8-A07W TCGA-A8-A085 TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
        9.99        36.95        33.01        19.96        12.00        37.05 
TCGA-A8-A08O TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A092 TCGA-A8-A097 TCGA-A8-A09A 
       31.00         0.99        33.01        30.97        12.00         9.99 
TCGA-A8-A09C TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09Q TCGA-AC-A2B8 
        1.02        45.07        29.98        33.07        25.02         1.48 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A3OD TCGA-AC-A5XU 
       73.05        99.35        26.04        33.04        14.83        14.96 
TCGA-AC-A62V TCGA-AC-A6IX TCGA-AC-A7VB TCGA-AC-A8OQ TCGA-AN-A041 TCGA-AN-A04C 
       11.44        12.26         8.22         1.12         0.23         1.78 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        9.96         7.36         7.46         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FY 
        6.44         7.96         7.59         7.04         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XU TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03P 
        0.33         0.33         5.59        61.35        66.77        95.70 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0JD TCGA-AO-A0JM TCGA-AO-A129 
       32.78        21.40        52.18        72.00        71.80       108.03 
TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A1KR TCGA-AO-A1KT TCGA-AQ-A04J 
       64.04        48.36        41.62        70.39        17.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AR-A0TP TCGA-AR-A0TQ TCGA-AR-A0TS 
      130.09         5.65         2.56       140.55        98.33        84.10 
TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
      109.02        98.93       133.22        83.87       134.14       125.16 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AQ TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24H 
      101.00       103.86        99.32        86.53        86.43       160.90 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A256 TCGA-AR-A2LK 
      112.77        97.84        89.00        93.30        93.83        54.21 
TCGA-AR-A2LR TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0IB TCGA-B6-A0IJ 
       57.27        10.59        77.62       143.38       129.57       233.62 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RL TCGA-B6-A0RO 
      127.33        84.59       165.76       140.88        81.17       162.05 
TCGA-B6-A0RS TCGA-B6-A0RU TCGA-B6-A0WY TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A400 
      100.70       282.90       113.79       101.52       139.17         7.07 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AY 
       70.16        68.12        18.84        62.93        59.84        25.55 
TCGA-BH-A0B3 TCGA-BH-A0B6 TCGA-BH-A0B9 TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BL 
       39.55        81.63        51.68        43.53        61.51        74.89 
TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0BW TCGA-BH-A0DQ TCGA-BH-A0E0 
       75.48        76.60        45.57        77.95         3.22         4.41 
TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0H0 TCGA-BH-A0H7 TCGA-BH-A0HU TCGA-BH-A0HW 
        9.63        24.49        15.16        23.08        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J 
       27.25        50.79        23.05        32.91        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A18V 
       90.84        26.66        55.63        66.05        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FJ 
       67.50        12.00        55.69        24.62       114.15        63.35 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FU TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       45.63        72.07        72.07        83.31        57.83       130.16 
TCGA-BH-A5IZ TCGA-BH-A8FZ TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12Q TCGA-C8-A12U 
       18.64        18.87        11.93        11.77        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A135 TCGA-C8-A138 
       12.66        12.56         3.16         1.87        12.92         4.08 
TCGA-C8-A1HF TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN 
       10.92         0.16        12.03        10.42        12.33        12.95 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A27A TCGA-C8-A8HP TCGA-C8-A8HQ 
       12.95         8.28         9.67        24.56        13.02        12.49 
TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A147 TCGA-D8-A1JC 
       13.41        19.46        56.81        13.25        19.20        15.78 
TCGA-D8-A1JF TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1X5 
       12.03        18.97        20.09        20.09        19.40        18.58 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XQ TCGA-D8-A1XT 
       23.90        27.58        21.80        19.92        16.41        16.64 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27G TCGA-D8-A27M 
       16.54        15.32        14.24        14.14        13.45        13.48 
TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27W TCGA-E2-A109 TCGA-E2-A14O TCGA-E2-A14P 
        4.80        10.09        12.26        46.59        44.68        40.96 
TCGA-E2-A14R TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A158 TCGA-E2-A159 
       38.60        69.34        63.62        69.96        14.79        25.05 
TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15H TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15S 
       23.34        20.71        12.92        11.05        19.56        14.07 
TCGA-E2-A1AZ TCGA-E2-A1B1 TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IN TCGA-E2-A1LG 
       76.57        87.22        33.73        33.70        22.19        50.07 
TCGA-E2-A1LL TCGA-E2-A573 TCGA-E2-A9RU TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1N9 
       43.04        34.92        17.69        22.29        34.16        36.20 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ 
       39.55        41.62        35.24        25.84         9.86        24.82 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RG TCGA-E9-A1RH 
       34.95         2.56        32.09        40.24        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A244 
       47.64        34.45        38.37        41.03        40.73         0.69 
TCGA-E9-A248 TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3QA TCGA-E9-A5FK TCGA-E9-A5UO 
        1.94        12.33        29.72        30.18        26.70        25.81 
TCGA-EW-A1J1 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY 
       18.90        28.77        25.94        22.82        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1P8 TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FR 
       40.41        29.82         7.86         6.15        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A6S9 TCGA-EW-A6SB TCGA-EW-A6SD 
       52.73        17.49        10.16        15.22        24.99        33.21 
TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DH TCGA-LL-A5YN TCGA-LL-A5YP TCGA-LL-A6FP 
      216.76        83.34        72.10        14.70        14.79        22.26 
TCGA-LL-A6FR TCGA-LL-A7T0 TCGA-LL-A8F5 TCGA-OL-A5D7 TCGA-OL-A5RW TCGA-OL-A5S0 
       16.08        12.36        19.59        58.52        36.36        20.38 
TCGA-OL-A6VO TCGA-PE-A5DD TCGA-PL-A8LX TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZH 
       28.21        64.21         0.16         9.93        18.81        21.07 
TCGA-S3-AA14 TCGA-V7-A7HQ TCGA-WT-AB41 TCGA-WT-AB44 TCGA-XX-A89A 
       17.39        66.84        52.96        29.03        16.04 

$`DEL PEAK 36(19P13.3) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SE 
      129.14        40.14        48.56        48.36         8.52        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SN 
       48.10        14.27        47.24        20.88         7.96        39.32 
TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04V 
       28.01        19.20       143.15        78.41       121.94        63.12 
TCGA-A2-A04W TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP 
      101.98        36.13       136.73        99.12       114.81        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       88.60       107.93        77.19        75.25         5.19        98.99 
TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN 
       56.81        34.55        33.76        61.58       101.72        89.36 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU 
      118.45        79.76        74.40        72.00        35.05        34.29 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU 
       31.82        61.94        24.72        63.29        99.19        54.64 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 
       27.12        44.88        44.28        17.52        17.13         8.38 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       20.52        17.46        18.90        32.55        25.28        50.47 
TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX 
       49.48        19.33        48.46        31.73        23.47        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A 
       22.45        19.20        19.56        16.47        52.47       107.70 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       42.44        17.19        10.59        36.23        39.65        33.93 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XY TCGA-A2-A4RW TCGA-A2-A4RX 
       29.98        32.75        56.28        35.93         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH 
       21.30        23.21        21.14        38.30        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13F TCGA-A7-A13G 
       30.61        37.45        33.11        29.79        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A3IY 
       29.56        31.36        24.26        23.80        20.61        11.34 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.29        11.28        13.41        14.70        11.97        14.93 
TCGA-A7-A4SB TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Y 
       13.74        10.72        11.05        13.02        13.02        26.01 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07S 
       43.00        19.99        18.97        14.01        12.00         7.99 
TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       24.99        45.07        15.06        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08L TCGA-A8-A08P TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       28.96         9.99        31.00       112.08        43.00        40.01 
TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09B TCGA-A8-A09D 
       33.01        17.95        41.98         9.99        12.00        50.04 
TCGA-A8-A09E TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       49.05         1.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04         0.95        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
        5.72        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       74.14        19.33        14.66        32.45         6.48        16.31 
TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
       22.19        24.13        25.05        14.99        16.57        19.79 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI 
       15.48        23.24        24.79        29.26        16.80        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6NO 
       19.33        13.71        17.42        18.67        13.58         1.68 
TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
        0.03        20.19         1.32         2.30         0.33         0.33 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AM TCGA-AN-A0FF 
        0.33         0.62         2.96         1.71         0.16         5.65 
TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0XL 
        7.00         7.17         6.90         0.36         0.33         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AO-A03L TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
        5.33        80.28        81.63        68.75        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       29.13        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JG 
       21.53        50.70        50.86        76.77        65.10        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       50.24        62.04        55.33       115.27        99.25       108.72 
TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12H TCGA-AO-A1KO 
      106.78        90.58        98.27        57.30        40.57        14.73 
TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       82.62        61.87         0.53        24.79        15.62        32.52 
TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TR TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TY 
       32.91        19.20         5.26        75.22        64.83        55.86 
TCGA-AR-A0TZ TCGA-AR-A0U0 TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AL TCGA-AR-A1AM 
      107.24        65.36       107.21       108.36        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU 
       96.00        86.07        93.90        17.23        37.81        94.29 
TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       61.28        33.73        50.89        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      118.59         2.76       104.28       105.27        77.69       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A255 
       32.58        98.76        98.66        99.62        85.64        71.05 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        66.15        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I5 
       39.39        40.54        73.35        33.30        38.96       281.29 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
       12.13       275.87        50.70        65.72       146.50       112.37 
TCGA-B6-A0IK TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
       18.77       129.07       255.68        68.45       212.25       234.28 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV 
       78.02       263.28       102.77       140.48        89.46       157.41 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WZ 
       97.48       188.68        79.63        18.35        21.47       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.88        43.59 
TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A401 TCGA-B6-A40B TCGA-B6-A40C 
       73.51       170.17        37.87        85.35       103.63        71.15 
TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B4 TCGA-BH-A0B5 
       20.45        63.09        81.44        40.83        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BJ TCGA-BH-A0BM 
       84.13        37.22        32.02        18.21        21.70        61.68 
TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 
       72.23        74.14        53.95        49.94        49.05        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       44.02        89.06        90.97        45.83        77.98        23.44 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO TCGA-BH-A0DP 
       38.01        29.98        13.91        78.28        17.26        15.65 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 
        2.56        38.47        67.86        70.88        16.27        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EE TCGA-BH-A0EI 
       14.30        44.81        46.19        32.58        31.00        24.43 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 
       30.35        10.78        37.78        53.26        24.56        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP 
       52.96        26.50        20.38         5.85         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       36.85         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A18G TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18T 
        4.90        72.56        37.74        30.28        37.55         7.36 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1EY 
       91.99       113.82        82.85        42.28        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FD 
       25.81        31.53        89.16        97.48       120.62        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FL TCGA-BH-A1FR TCGA-BH-A201 
       74.73       122.89        36.92        55.00       144.59        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       26.14        38.60        10.65         6.44        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY 
      109.28        20.88        23.51         9.63         5.26         9.70 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12V 
       21.76         9.44        11.77        12.66        11.77        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A1HE 
       12.66        48.53        13.51        12.59         4.11        12.33 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       11.34        11.28        12.33        20.25        12.53        12.36 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        9.53         0.03         9.50        14.43        33.99        12.95 
TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 
       20.88        20.58        13.97        14.17        13.48        21.14 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE 
       14.17        17.49        16.50        55.50        18.15        18.90 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JK TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       53.00        14.01        20.12        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XB 
       13.32        14.70        17.79        16.73        25.74        18.15 
TCGA-D8-A1XC TCGA-D8-A1XD TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XM 
       12.39        17.16        15.22        14.73        14.50        17.69 
TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       55.30        15.85        16.31        12.99        15.16        43.04 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27I 
       15.52         9.93        17.42        16.04        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A3Z5 
       48.03        16.41         1.61        13.08        12.53        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 
       18.51        21.67        16.18        12.66        25.22        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       34.42        27.52        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       28.87        47.15        38.24        33.17        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A154 
       34.26        32.02        31.96        18.51        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15G 
       21.04        23.87        22.82        17.29        21.63        18.21 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15O TCGA-E2-A15R 
       55.63        53.92         9.04        20.58        50.79        56.94 
TCGA-E2-A15T TCGA-E2-A1B0 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       51.39        53.62        33.01        32.35        28.50        16.47 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.25        77.65        37.41        70.36        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L8 
        3.88        60.99        11.08        54.18        60.36        73.64 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
        8.75        26.99        34.55        43.56         8.28        30.61 
TCGA-E2-A574 TCGA-E2-A576 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1NA 
       38.76        34.29        34.82        32.88        36.82        36.56 
TCGA-E9-A1NE TCGA-E9-A1NH TCGA-E9-A1R0 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       35.77        18.94        28.27         6.12         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A227 
       48.23        45.01         1.12        46.65         6.58        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 
       42.25        37.74        39.09        41.72        40.50        20.12 
TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       38.99         7.13        24.56         9.47        38.07        32.91 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FL TCGA-E9-A5UP TCGA-E9-A6HE 
       30.44        23.90        23.84         0.79        26.40        27.85 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 
       12.20        39.72         8.48        18.21        13.25        16.57 
TCGA-EW-A1J5 TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P5 TCGA-EW-A1P6 
       15.68        41.13        39.78        52.96        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF 
       30.08        18.90        19.99        13.94        10.52        14.43 
TCGA-EW-A1PG TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 TCGA-EW-A6SA 
       34.55        25.91        22.09        34.03        23.51        16.77 
TCGA-EW-A6SC TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DB TCGA-GM-A2DD 
       31.30         7.40       109.87        59.57        79.10        75.02 
TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       70.85        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
       85.35       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF 
       11.57        21.24        13.22         7.10        13.28        10.62 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
       24.95        32.75        29.23        25.05        17.06        15.32 
TCGA-LL-A5YO TCGA-LL-A6FQ TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ 
       14.47         2.63        15.68         7.46        14.50        19.53 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 
       17.49        27.91        22.39         2.10        36.30        31.99 
TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        40.08        34.92        28.87        24.72        22.32 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N 
       26.70        23.47        65.62        41.92        42.77        26.04 
TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC 
       17.36        14.07        19.73        40.11         8.91        47.01 
TCGA-PE-A5DE TCGA-PL-A8LY TCGA-S3-A6ZG TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 
       86.96         0.26        18.48        20.68        19.27        13.84 
TCGA-S3-AA12 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-W8-A86G 
       18.87        17.26        13.94        17.03         3.81        11.41 
TCGA-XX-A899 TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35       108.07       107.05 

  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                        282.90                         281.29 
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                         25.22                          28.96 
[1] "0.2 - 282.9 (25.2)" "0.0 - 281.3 (29.0)"
[1] "hr=" "1.2"
D65V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 36(19P13.3) MUTATED        28       23        1        1       127
  DEL PEAK 36(19P13.3) WILD-TYPE      61       62        5        5       226
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 36(19P13.3) MUTATED          85         1         52         11
  DEL PEAK 36(19P13.3) WILD-TYPE       167         1        102         18
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 36(19P13.3) MUTATED           22        8         0       3
  DEL PEAK 36(19P13.3) WILD-TYPE         43       12         1      10
D65V3, multiclass
            clus
vv           DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  STAGE I                              28                             61
  STAGE IA                             23                             62
  STAGE IB                              1                              5
  STAGE II                              1                              5
  STAGE IIA                           127                            226
  STAGE IIB                            85                            167
  STAGE III                             1                              1
  STAGE IIIA                           52                            102
  STAGE IIIB                           11                             18
  STAGE IIIC                           22                             43
  STAGE IV                              8                             12
  STAGE TIS                             0                              1
  STAGE X                               3                             10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 36(19P13.3) MUTATED    81 230  37  15
  DEL PEAK 36(19P13.3) WILD-TYPE 195 394  99  25
D65V4, multiclass
    clus
vv   DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  T1                           81                            195
  T2                          230                            394
  T3                           37                             99
  T4                           15                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 36(19P13.3) MUTATED   172 116  43  26
  DEL PEAK 36(19P13.3) WILD-TYPE 335 242  76  51
D65V5, multiclass
    clus
vv   DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  N0                          172                            335
  N1                          116                            242
  N2                           43                             76
  N3                           26                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V6, binary
                                cls
clus                               0   1
  DEL PEAK 36(19P13.3) MUTATED   306   8
  DEL PEAK 36(19P13.3) WILD-TYPE 583  14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(19P13.3) MUTATED    306    8
  DEL PEAK 36(19P13.3) WILD-TYPE  583   14
   clus
vv  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  0                          306                            583
  1                            8                             14
[1] 2 2
[1] FALSE
D65V7, binary
                                cls
clus                               0   1
  DEL PEAK 36(19P13.3) MUTATED   361   2
  DEL PEAK 36(19P13.3) WILD-TYPE 707  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(19P13.3) MUTATED    361    2
  DEL PEAK 36(19P13.3) WILD-TYPE  707   10
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  FEMALE                          361                            707
  MALE                              2                             10
[1] 2 2
[1] FALSE
D65V8, binary
                                cls
clus                               0   1
  DEL PEAK 36(19P13.3) MUTATED   147 173
  DEL PEAK 36(19P13.3) WILD-TYPE 282 345
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(19P13.3) MUTATED    147  173
  DEL PEAK 36(19P13.3) WILD-TYPE  282  345
     clus
vv    DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  NO                           147                            282
  YES                          173                            345
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 36(19P13.3) MUTATED                            1
  DEL PEAK 36(19P13.3) WILD-TYPE                          0
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 36(19P13.3) MUTATED                             302
  DEL PEAK 36(19P13.3) WILD-TYPE                           468
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 36(19P13.3) MUTATED                               24
  DEL PEAK 36(19P13.3) WILD-TYPE                            176
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 36(19P13.3) MUTATED                     5                     4
  DEL PEAK 36(19P13.3) WILD-TYPE                   1                     5
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 36(19P13.3) MUTATED                                  9
  DEL PEAK 36(19P13.3) WILD-TYPE                               20
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 36(19P13.3) MUTATED                    5             12
  DEL PEAK 36(19P13.3) WILD-TYPE                 12             35
D65V9, multiclass
                                  clus
vv                                 DEL PEAK 36(19P13.3) MUTATED
  INFILTRATING CARCINOMA NOS                                  1
  INFILTRATING DUCTAL CARCINOMA                             302
  INFILTRATING LOBULAR CARCINOMA                             24
  MEDULLARY CARCINOMA                                         5
  METAPLASTIC CARCINOMA                                       4
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          5
  OTHER  SPECIFY                                             12
                                  clus
vv                                 DEL PEAK 36(19P13.3) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    0
  INFILTRATING DUCTAL CARCINOMA                               468
  INFILTRATING LOBULAR CARCINOMA                              176
  MEDULLARY CARCINOMA                                           1
  METAPLASTIC CARCINOMA                                         5
  MIXED HISTOLOGY (PLEASE SPECIFY)                             20
  MUCINOUS CARCINOMA                                           12
  OTHER  SPECIFY                                               35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 36(19P13.3) MUTATED                                  0    28
  DEL PEAK 36(19P13.3) WILD-TYPE                                1    32
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 36(19P13.3) MUTATED                          79   223
  DEL PEAK 36(19P13.3) WILD-TYPE                       102   522
D65V11, multiclass
                                  clus
vv                                 DEL PEAK 36(19P13.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      28
  BLACK OR AFRICAN AMERICAN                                  79
  WHITE                                                     223
                                  clus
vv                                 DEL PEAK 36(19P13.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        32
  BLACK OR AFRICAN AMERICAN                                   102
  WHITE                                                       522
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V12, binary
                                cls
clus                               0   1
  DEL PEAK 36(19P13.3) MUTATED    13 296
  DEL PEAK 36(19P13.3) WILD-TYPE  26 579
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(19P13.3) MUTATED     13  296
  DEL PEAK 36(19P13.3) WILD-TYPE   26  579
                        clus
vv                       DEL PEAK 36(19P13.3) MUTATED
  HISPANIC OR LATINO                               13
  NOT HISPANIC OR LATINO                          296
                        clus
vv                       DEL PEAK 36(19P13.3) WILD-TYPE
  HISPANIC OR LATINO                                 26
  NOT HISPANIC OR LATINO                            579
[1] 2 2
[1] FALSE

Clustering(66) Variable = DEL PEAK 37(19Q13.32) MUTATION ANALYSIS
D66V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 37(19Q13.32) MUTATED   176  38
  DEL PEAK 37(19Q13.32) WILD-TYPE 741 109
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                            214                             850 
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                             38                             109 
$`DEL PEAK 37(19Q13.32) MUTATED`
TCGA-5L-AAT0 TCGA-5T-A9QA TCGA-A1-A0SO TCGA-A1-A0SQ TCGA-A2-A04U TCGA-A2-A04X 
       48.56         9.96        28.01        18.21        87.25        55.43 
TCGA-A2-A0CW TCGA-A2-A0D1 TCGA-A2-A0EO TCGA-A2-A0SV TCGA-A2-A0SX TCGA-A2-A0T7 
      107.93        34.55        80.28        27.12        50.43        20.75 
TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1G1 
       21.90        18.61        31.73        23.77        17.36        19.20 
TCGA-A2-A3XT TCGA-A7-A0CJ TCGA-A7-A13E TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A4SE 
       91.07        30.61        20.19        22.32        11.28        21.17 
TCGA-A7-A56D TCGA-A7-A6VY TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A076 
       14.73         8.75         1.02        17.98        53.06        53.98 
TCGA-A8-A07G TCGA-A8-A07O TCGA-A8-A08B TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08L 
       18.97         9.99        38.01        33.01        19.96         9.99 
TCGA-A8-A08S TCGA-A8-A09C TCGA-A8-A09I TCGA-A8-A09M TCGA-A8-A09N TCGA-AC-A23C 
       33.01         1.02        45.07        33.07         1.02         0.95 
TCGA-AC-A2FM TCGA-AC-A62V TCGA-AC-A8OQ TCGA-AN-A041 TCGA-AN-A0AS TCGA-AN-A0AT 
       26.04        11.44         1.12         0.23         0.33         0.33 
TCGA-AN-A0FV TCGA-AN-A0FZ TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A03V 
        0.33         0.33        80.28        66.77        95.70        29.13 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JL TCGA-AO-A124 
       32.78        21.40        72.00        76.77        55.33       115.27 
TCGA-AO-A129 TCGA-AO-A1KQ TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04L TCGA-AQ-A0Y5 
      108.03        61.87        17.79        24.79       130.09         5.65 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A0U4 TCGA-AR-A1AJ 
       55.86        65.36        83.87       134.14       107.21       101.00 
TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A251 TCGA-AR-A252 
      160.90        94.22       112.77        97.84        99.62        93.30 
TCGA-AR-A2LK TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0IB TCGA-B6-A0IQ TCGA-B6-A0RV 
       54.21        10.59        77.62       129.57       140.88       157.41 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X1 TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A400 
       21.47       113.79       245.10       101.52       139.17         7.07 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-BH-A0AV TCGA-BH-A0B9 TCGA-BH-A0BP 
       70.16        68.12        18.84        59.84        51.68        75.48 
TCGA-BH-A0BR TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DQ TCGA-BH-A0EB TCGA-BH-A0EE 
       76.60        41.75        90.97         3.22        24.49        31.00 
TCGA-BH-A0H7 TCGA-BH-A0HY TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18K 
       23.08        50.79        23.05        32.91        35.93        90.84 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1ES TCGA-BH-A1EY TCGA-BH-A1F6 
       66.05         7.36        51.16       113.82        17.69        97.48 
TCGA-BH-A1FC TCGA-BH-A1FU TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A5IZ TCGA-BH-A5J0 
      114.15        72.07        83.31       130.16        18.64        23.51 
TCGA-C8-A12M TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12Z TCGA-C8-A132 
       11.77        11.77        12.66        12.66        12.56         1.87 
TCGA-C8-A1HF TCGA-C8-A1HL TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A278 TCGA-C8-A27A 
       10.92        10.42        12.36        12.95         9.50        24.56 
TCGA-C8-A27B TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A140 
       14.43        13.02        12.49        19.46        56.81        13.25 
TCGA-D8-A147 TCGA-D8-A1JC TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       19.20        15.78        53.00        18.97        20.09        20.12 
TCGA-D8-A1JP TCGA-D8-A1XA TCGA-D8-A1XD TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XT 
       21.01        27.58        17.16        14.50        16.41        16.64 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y3 TCGA-D8-A27F TCGA-D8-A27R TCGA-E2-A109 
       16.54        15.32        14.14        16.04        10.09        46.59 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A159 TCGA-E2-A15H TCGA-E2-A15S 
       44.68        40.96        38.60        25.05        12.92        14.07 
TCGA-E2-A1L7 TCGA-E2-A1LL TCGA-E2-A573 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NF 
       60.36        43.04        34.92        22.29        36.56        35.24 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R3 TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RG 
        9.86        24.82         2.56        48.23        32.09        21.27 
TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A22A TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 
       46.59        34.45        39.09        40.73        20.12         0.69 
TCGA-E9-A3HO TCGA-E9-A3QA TCGA-E9-A5UO TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY 
       38.07        30.18        25.81        22.82        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PF TCGA-EW-A2FR TCGA-EW-A2FS 
       40.41        18.90         6.15        14.43        55.00        52.73 
TCGA-EW-A3U0 TCGA-EW-A6S9 TCGA-EW-A6SA TCGA-GM-A2DB TCGA-GM-A2DF TCGA-GM-A2DH 
       17.49        15.22        16.77        79.10        70.85        72.10 
TCGA-HN-A2NL TCGA-LL-A5YL TCGA-LL-A6FR TCGA-LL-A7T0 TCGA-OL-A5D7 TCGA-OL-A5RY 
        2.60        17.06        16.08        12.36        58.52        24.72 
TCGA-OL-A5S0 TCGA-OL-A6VO TCGA-PE-A5DC TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-AA14 
       20.38        28.21        47.01         0.16        18.81        17.39 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-WT-AB41 TCGA-WT-AB44 
       17.03         3.81        52.96        29.03 

$`DEL PEAK 37(19Q13.32) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT1 
      129.14       131.67        42.81        40.14        11.44        48.36 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP 
       20.88        13.68        31.79         7.96        39.32        19.20 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04V 
      143.15        18.02        78.41       121.94        73.84        63.12 
TCGA-A2-A04W TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
      101.98        36.13       136.73        99.12        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU 
       92.48        88.60       107.93        77.19        75.25         5.19 
TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       98.99        56.81        67.33        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72        89.36       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 
       99.19        54.64        44.88        44.28        17.52        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YC 
        8.38        49.84        20.52        17.46        18.90        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK 
       25.28        18.21        50.47        21.67        49.48        19.33 
TCGA-A2-A0YL TCGA-A2-A1FV TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 
       48.46        23.47        60.72        22.45        20.25        19.56 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       16.47        52.47       107.70        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XU 
      105.34        10.59        36.23        39.65        33.93        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        56.28        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 
       21.90        38.30        35.31        34.29        35.47        37.45 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A13G 
       35.67        33.11        29.79        31.73        25.15        23.61 
TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26I 
       29.56        31.36        24.26        23.74        23.80        21.73 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A5ZV 
       11.97        14.93        13.74        14.50        17.92        12.10 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A8-A06O 
       10.72        11.05        10.29         9.37        10.42        13.02 
TCGA-A8-A06P TCGA-A8-A06U TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
       13.02        29.03        31.00        26.01         1.02        17.03 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J 
        9.01        43.00        19.99        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
       32.05        10.98         8.98         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C 
       45.07        15.06        36.95        13.02         0.99        28.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T 
       12.00        37.05        31.00        31.00         0.99       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 
       43.00        40.01        33.01        30.97        17.95        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09E 
       12.00         9.99         9.99        12.00        50.04        49.05 
TCGA-A8-A09K TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       29.98        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       27.02        17.03        38.04        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
        1.48        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       60.92        87.12        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ 
       32.45         6.48        16.31        14.83        22.19        24.13 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI 
       25.05        14.99        16.57        19.79        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU 
       24.79        29.26        16.80        14.53        19.33        14.96 
TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX TCGA-AC-A6NO 
       13.71        17.42        18.67        13.58        12.26         1.68 
TCGA-AC-A7VB TCGA-AC-A7VC TCGA-AC-A8OP TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
        8.22         0.03        20.19         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.33         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FD 
        9.96         7.36         7.46         0.16         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0XL TCGA-AN-A0XN 
        7.04         0.36         0.33         0.33         5.36         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
       12.33         0.30         0.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T 
        5.33         5.59        61.35        81.63        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 
       58.95        52.18        26.04        37.48        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JG 
       53.03        21.53        50.70        50.86        65.10        26.24 
TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       50.24        62.04        71.80        99.25       108.72       106.78 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
       90.58        98.27        64.04        57.30        48.36        41.62 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04J 
       40.57        14.73        82.62        70.39         0.53        26.93 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP 
       15.62        32.52         2.56        32.91        19.20       140.55 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TW 
       98.33         5.26        84.10       109.02        75.22        98.93 
TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U1 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AK 
       64.83       107.24       133.22       125.16       108.36       103.86 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
       97.68        98.33        96.00        86.07        93.90        99.32 
TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       17.23        37.81        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       33.73        50.89       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
      104.28       105.27        77.69       105.30        32.58        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       98.66        89.00        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        66.15        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I2 
       40.54        57.27        73.35        33.30        38.96       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
      281.29        12.13       275.87        50.70        65.72       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RL 
      129.07       255.68        68.45       212.25       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RS 
       78.02       263.28       162.05       102.77       140.48       100.70 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
       89.46       282.90        97.48       188.68        79.63        18.35 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      206.86       129.70        28.27        68.94        58.88        43.59 
TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A401 TCGA-B6-A40B TCGA-B6-A40C 
       73.51       170.17        37.87        85.35       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 
       62.93        20.45        25.55        63.09        81.44        40.83 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA 
       39.55        39.16        70.22        81.63        84.13        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       61.68        72.23        74.14        53.95        45.57        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE 
       77.95        49.05        44.02        89.06        45.83        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       23.44        38.01        29.98        13.91        78.28        17.26 
TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
       15.65         2.56        38.47        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        46.19 
TCGA-BH-A0EA TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       32.58        24.43        30.35        10.78        15.16        37.78 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI 
       53.26        24.56        41.00        52.96        26.50        20.38 
TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       27.25         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A18G TCGA-BH-A18J TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
        4.90        20.12        26.66        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ET 
       55.63        37.55        51.39        67.50        91.99        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        12.00        55.69        49.58        25.81        31.53 
TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       89.16        24.62       120.62        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       36.92        63.35        55.00        45.63        72.07       144.59 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A28O TCGA-BH-A28Q 
       28.14        26.14        38.60        57.83        10.65         6.44 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A6R8 TCGA-BH-A6R9 
       20.12        10.52       109.28        20.88         9.63         5.26 
TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12N 
        9.70        18.87        21.76         9.44        11.93        11.77 
TCGA-C8-A12O TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A130 
       12.66        12.66        12.66        12.66        48.53         3.16 
TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       13.51        12.59        12.92         4.11         4.08        12.33 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
       11.34        11.28         0.16        12.03        12.33        12.95 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.33        20.25        12.53         8.28         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HR TCGA-D8-A13Z TCGA-D8-A141 
        0.03        33.99        12.95        13.41        20.88        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.97        14.17        13.48        21.14        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JH 
       16.50        55.50        18.15        18.90        12.03        14.01 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        19.40        20.38        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XB 
       18.58        17.79        16.73        25.74        23.90        18.15 
TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM 
       12.39        15.22        14.73        21.80        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       55.30        15.85        16.31        12.99        15.16        43.04 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H 
       15.52         9.93        14.24        17.42        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       14.43        48.03        16.41        13.48         4.80         1.61 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       16.18        12.66        25.22        43.00        34.42        27.52 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       40.41        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.24        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        14.79        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15J 
       17.29        20.71        21.63        18.21        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R 
        9.04        20.58        11.05        50.79        19.56        56.94 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        73.64        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       75.81        28.90        50.07       106.75       102.61         8.75 
TCGA-E2-A2P5 TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A574 
       26.99        34.55        43.56         8.28        30.61        38.76 
TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.29        17.69        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH 
       36.20        39.55        41.62        35.77        25.84        18.94 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA 
       28.27        34.95         6.12         3.02        11.15        45.01 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RI TCGA-E9-A227 
       40.24         1.12        46.65         6.58        47.64        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22H 
       42.25        37.74        38.37        41.03        41.72        40.50 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
        9.47        32.91        30.44        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        26.40        27.85        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 
       18.21        18.90        13.25        16.57        15.68        28.77 
TCGA-EW-A1OV TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 
       25.94        41.13        39.78        52.96        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PE 
       18.48        30.08         7.86        19.99        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A423 
       34.55        19.96        25.91        22.09        34.03        10.16 
TCGA-EW-A424 TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GI-A2C9 
       23.51        24.99        31.30        33.21         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DK 
       59.57       216.76        83.34        75.02        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
      115.69       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 
       62.47        11.84        11.57        21.24        13.22         7.10 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ 
       15.32        14.70        14.47        14.79        22.26         2.63 
TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A8F5 TCGA-LL-A9Q3 
       15.68         7.46        14.50        19.53        19.59        17.49 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA 
       27.91        22.39         2.10        36.30        31.99        58.62 
TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RZ TCGA-OL-A66H 
       40.08        34.92        36.36        28.87        22.32        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66O 
       23.47        65.62        41.92        42.77        26.04        17.36 
TCGA-OL-A66P TCGA-OL-A6VQ TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DD TCGA-PE-A5DE 
       14.07        19.73        40.11         8.91        64.21        86.96 
TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA0Z TCGA-S3-AA10 
        0.26         9.93        18.48        21.07        20.68        19.27 
TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-V7-A7HQ TCGA-W8-A86G 
       13.84        18.87        17.26        13.94        66.84        11.41 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                           0.16                            0.03 
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                          245.1                           282.9 
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                         25.925                          28.270 
[1] "0.2 - 245.1 (25.9)" "0.0 - 282.9 (28.3)"
[1] "hr=" "1.3"
D66V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 37(19Q13.32) MUTATED        15       15        0        1        76
  DEL PEAK 37(19Q13.32) WILD-TYPE      74       70        6        5       277
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 37(19Q13.32) MUTATED          47         1         40          3
  DEL PEAK 37(19Q13.32) WILD-TYPE       205         1        114         26
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 37(19Q13.32) MUTATED           10        5         0       1
  DEL PEAK 37(19Q13.32) WILD-TYPE         55       15         1      12
D66V3, multiclass
            clus
vv           DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  STAGE I                               15                              74
  STAGE IA                              15                              70
  STAGE IB                               0                               6
  STAGE II                               1                               5
  STAGE IIA                             76                             277
  STAGE IIB                             47                             205
  STAGE III                              1                               1
  STAGE IIIA                            40                             114
  STAGE IIIB                             3                              26
  STAGE IIIC                            10                              55
  STAGE IV                               5                              15
  STAGE TIS                              0                               1
  STAGE X                                1                              12
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  DEL PEAK 37(19Q13.32) MUTATED    51 137  22   6
  DEL PEAK 37(19Q13.32) WILD-TYPE 225 487 114  34
D66V4, multiclass
    clus
vv   DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  T1                            51                             225
  T2                           137                             487
  T3                            22                             114
  T4                             6                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  DEL PEAK 37(19Q13.32) MUTATED    98  70  35  12
  DEL PEAK 37(19Q13.32) WILD-TYPE 409 288  84  65
D66V5, multiclass
    clus
vv   DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  N0                            98                             409
  N1                            70                             288
  N2                            35                              84
  N3                            12                              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V6, binary
                                 cls
clus                                0   1
  DEL PEAK 37(19Q13.32) MUTATED   173   6
  DEL PEAK 37(19Q13.32) WILD-TYPE 716  16
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 37(19Q13.32) MUTATED    173    6
  DEL PEAK 37(19Q13.32) WILD-TYPE  716   16
   clus
vv  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  0                           173                             716
  1                             6                              16
[1] 2 2
[1] FALSE
D66V7, binary
                                 cls
clus                                0   1
  DEL PEAK 37(19Q13.32) MUTATED   213   3
  DEL PEAK 37(19Q13.32) WILD-TYPE 855   9
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 37(19Q13.32) MUTATED    213    3
  DEL PEAK 37(19Q13.32) WILD-TYPE  855    9
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  FEMALE                           213                             855
  MALE                               3                               9
[1] 2 2
[1] FALSE
D66V8, binary
                                 cls
clus                                0   1
  DEL PEAK 37(19Q13.32) MUTATED    83 110
  DEL PEAK 37(19Q13.32) WILD-TYPE 346 408
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 37(19Q13.32) MUTATED     83  110
  DEL PEAK 37(19Q13.32) WILD-TYPE  346  408
     clus
vv    DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  NO                             83                             346
  YES                           110                             408
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  DEL PEAK 37(19Q13.32) MUTATED                            0
  DEL PEAK 37(19Q13.32) WILD-TYPE                          1
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 37(19Q13.32) MUTATED                             185
  DEL PEAK 37(19Q13.32) WILD-TYPE                           585
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 37(19Q13.32) MUTATED                               10
  DEL PEAK 37(19Q13.32) WILD-TYPE                            190
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 37(19Q13.32) MUTATED                     3                     1
  DEL PEAK 37(19Q13.32) WILD-TYPE                   3                     8
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 37(19Q13.32) MUTATED                                  6
  DEL PEAK 37(19Q13.32) WILD-TYPE                               23
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 37(19Q13.32) MUTATED                    4              6
  DEL PEAK 37(19Q13.32) WILD-TYPE                 13             41
D66V9, multiclass
                                  clus
vv                                 DEL PEAK 37(19Q13.32) MUTATED
  INFILTRATING CARCINOMA NOS                                   0
  INFILTRATING DUCTAL CARCINOMA                              185
  INFILTRATING LOBULAR CARCINOMA                              10
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        1
  MIXED HISTOLOGY (PLEASE SPECIFY)                             6
  MUCINOUS CARCINOMA                                           4
  OTHER  SPECIFY                                               6
                                  clus
vv                                 DEL PEAK 37(19Q13.32) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     1
  INFILTRATING DUCTAL CARCINOMA                                585
  INFILTRATING LOBULAR CARCINOMA                               190
  MEDULLARY CARCINOMA                                            3
  METAPLASTIC CARCINOMA                                          8
  MIXED HISTOLOGY (PLEASE SPECIFY)                              23
  MUCINOUS CARCINOMA                                            13
  OTHER  SPECIFY                                                41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 37(19Q13.32) MUTATED                                  0    17
  DEL PEAK 37(19Q13.32) WILD-TYPE                                1    43
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 37(19Q13.32) MUTATED                          44   138
  DEL PEAK 37(19Q13.32) WILD-TYPE                       137   607
D66V11, multiclass
                                  clus
vv                                 DEL PEAK 37(19Q13.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       17
  BLACK OR AFRICAN AMERICAN                                   44
  WHITE                                                      138
                                  clus
vv                                 DEL PEAK 37(19Q13.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         43
  BLACK OR AFRICAN AMERICAN                                    137
  WHITE                                                        607
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V12, binary
                                 cls
clus                                0   1
  DEL PEAK 37(19Q13.32) MUTATED     6 181
  DEL PEAK 37(19Q13.32) WILD-TYPE  33 694
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 37(19Q13.32) MUTATED      6  181
  DEL PEAK 37(19Q13.32) WILD-TYPE   33  694
                        clus
vv                       DEL PEAK 37(19Q13.32) MUTATED
  HISPANIC OR LATINO                                 6
  NOT HISPANIC OR LATINO                           181
                        clus
vv                       DEL PEAK 37(19Q13.32) WILD-TYPE
  HISPANIC OR LATINO                                  33
  NOT HISPANIC OR LATINO                             694
[1] 2 2
[1] FALSE

Clustering(67) Variable = DEL PEAK 38(20P13) MUTATION ANALYSIS
D67V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 38(20P13) MUTATED   131  26
  DEL PEAK 38(20P13) WILD-TYPE 786 121
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                         157                          907 
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                          26                          121 
$`DEL PEAK 38(20P13) MUTATED`
TCGA-5T-A9QA TCGA-A1-A0SK TCGA-A1-A0SO TCGA-A2-A04T TCGA-A2-A0CM TCGA-A2-A0D0 
        9.96        31.79        28.01        73.84        24.79        67.33 
TCGA-A2-A0ST TCGA-A2-A0T3 TCGA-A2-A0YE TCGA-A2-A0YH TCGA-A2-A3XU TCGA-A2-A4S3 
       99.19        49.84        18.21        21.67        29.98        21.90 
TCGA-A7-A0CE TCGA-A7-A13F TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26I TCGA-A7-A4SE 
       35.31        25.15        31.36        24.26        21.73        21.17 
TCGA-A7-A5ZV TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A079 TCGA-A8-A07L 
       12.10         1.02        17.98        31.00         9.01        32.05 
TCGA-A8-A07P TCGA-A8-A08F TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A09Q 
       10.98        33.01        37.05         9.99        31.00        25.02 
TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0AB TCGA-AC-A3W5 TCGA-AC-A62V TCGA-AC-A62X 
        0.99        19.04        17.03        16.57        11.44        13.71 
TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AN-A0AT TCGA-AN-A0FY TCGA-AN-A0XW TCGA-AO-A03R 
        8.22        20.19         0.33         0.33         5.59        68.75 
TCGA-AO-A0J2 TCGA-AO-A0J6 TCGA-AO-A1KQ TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J 
       32.78        37.48        61.87        17.79        24.79        26.93 
TCGA-AQ-A54N TCGA-AR-A0TS TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0U1 TCGA-AR-A0U3 
        2.56        84.10        98.93        55.86       133.22       134.14 
TCGA-AR-A1AR TCGA-AR-A1AU TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A251 TCGA-AR-A252 
       17.23        94.29        33.73        50.89        99.62        93.30 
TCGA-B6-A0I9 TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0RL TCGA-B6-A0RS TCGA-B6-A0WT 
       12.13       233.62        18.77        81.17       100.70       188.68 
TCGA-B6-A0WX TCGA-B6-A0X1 TCGA-B6-A1KN TCGA-B6-A400 TCGA-BH-A0AV TCGA-BH-A0B4 
       21.47       245.10       139.17         7.07        59.84        39.16 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BG TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BZ 
       84.13        51.68        61.51        75.48        76.60        49.05 
TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DH TCGA-BH-A0E1 TCGA-BH-A0EE TCGA-BH-A0HB 
       41.75        90.97        38.01        15.68        31.00        26.50 
TCGA-BH-A18R TCGA-BH-A18T TCGA-BH-A18V TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FM 
       37.55         7.36        51.16       114.15        33.17        45.63 
TCGA-BH-A1FN TCGA-BH-A203 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A130 TCGA-C8-A134 
       72.07        38.60        11.93        11.77         3.16        12.59 
TCGA-C8-A135 TCGA-C8-A1HJ TCGA-C8-A1HN TCGA-C8-A26Z TCGA-C8-A8HQ TCGA-D8-A1J9 
       12.92         0.16        12.95         8.28        12.49        17.49 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XD TCGA-D8-A1XJ 
       20.12        20.09        23.90        27.58        17.16        21.80 
TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y3 TCGA-D8-A27F 
       14.50        16.41        15.32        15.52        14.14        16.04 
TCGA-D8-A27H TCGA-D8-A27R TCGA-E2-A14R TCGA-E2-A150 TCGA-E2-A15A TCGA-E2-A15E 
       13.05        10.09        38.60        63.62        23.34        20.71 
TCGA-E2-A15F TCGA-E2-A15S TCGA-E2-A1L7 TCGA-E2-A1LH TCGA-E2-A2P5 TCGA-E2-A573 
       21.63        14.07        60.36       106.75        26.99        34.92 
TCGA-E9-A1N5 TCGA-E9-A1N9 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RE TCGA-E9-A1RH 
       36.82        36.20        11.15        48.23        46.65        46.59 
TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A244 TCGA-E9-A3HO TCGA-EW-A1OZ TCGA-EW-A1P4 
       41.03        40.73         0.69        38.07        40.41        29.82 
TCGA-EW-A1P8 TCGA-EW-A2FR TCGA-EW-A2FV TCGA-GI-A2C9 TCGA-GM-A2DF TCGA-GM-A2DH 
        7.86        55.00        25.91       109.87        70.85        72.10 
TCGA-GM-A3XL TCGA-HN-A2NL TCGA-JL-A3YX TCGA-LL-A5YP TCGA-LL-A8F5 TCGA-MS-A51U 
       69.30         2.60        11.57        14.79        19.59        22.39 
TCGA-OL-A5RW TCGA-OL-A5S0 TCGA-OL-A66O TCGA-OL-A6VO TCGA-PL-A8LX TCGA-S3-AA0Z 
       36.36        20.38        17.36        28.21         0.16        20.68 
TCGA-WT-AB44 
       29.03 

$`DEL PEAK 38(20P13) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 
      129.14       131.67        42.81        40.14        11.44        48.56 
TCGA-5L-AAT1 TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
       48.36         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SP 
       47.24        20.88        13.68         7.96        39.32        19.20 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U 
       18.21       143.15        18.02        78.41       121.94        87.25 
TCGA-A2-A04V TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL 
       63.12       101.98        55.43        36.13       136.73        99.12 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      114.81        92.48        88.60       107.93        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 
        5.19        98.99       107.93        56.81        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       61.58        25.22       101.72        89.36        80.28       118.45 
TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV 
       79.76        74.40        72.00        35.05        34.29        31.82 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       61.94        24.72        63.29        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T4 
       50.43        44.28        17.52        17.13         8.38        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       17.46        18.90        20.75        32.55        25.28        50.47 
TCGA-A2-A0YG TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.90        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25A TCGA-A2-A25B 
       19.20        19.56        16.47        52.47       107.70        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       33.93        91.07        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A7-A0CD TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       26.96        21.14        38.30        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26H TCGA-A7-A26J TCGA-A7-A2KD 
       23.61        29.56        23.74        23.80        20.61        22.32 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 
       11.34        10.59        10.29        11.28        13.41        14.70 
TCGA-A7-A426 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D 
       11.97        14.93        13.74        14.50        17.92        14.73 
TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VX TCGA-A7-A6VY 
       10.72        11.05        10.29         9.37        10.42         8.75 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02        13.02        53.06        29.03        26.01         1.02 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G 
       17.03        53.98        43.00        19.99        18.97        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U 
       14.01        12.00         9.99         8.98         7.99        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        15.06        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08P TCGA-A8-A08R 
       38.01        28.96        19.96        12.00        31.00         0.99 
TCGA-A8-A08S TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 TCGA-A8-A092 
       33.01       112.08        43.00        40.01        33.01        30.97 
TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       17.95        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-A8-A09M 
        1.02        50.04        49.05        45.07        29.98        33.07 
TCGA-A8-A09N TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 
        1.02         8.98        19.04        15.02        14.01        12.00 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AD TCGA-AC-A23C 
       13.02        21.04         0.99        27.02        38.04         0.95 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72         1.48        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN 
       16.31        14.83        22.19        24.13        25.05        14.99 
TCGA-AC-A3W6 TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH 
       19.79        15.48        23.24        24.79        29.26        16.80 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW 
       14.53        19.33        14.96        17.42        18.67        13.58 
TCGA-AC-A6IX TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS 
       12.26         1.68         0.03         1.12         1.32         2.30 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
        0.33         0.33         0.23         0.33         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        1.78         1.71         9.96         7.36         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        7.59         7.17         6.90         7.04         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.33         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AO-A03L 
        0.33         0.33         0.33         0.33         5.33        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03T TCGA-AO-A03U 
       61.35        66.77        81.63        95.70        47.87        58.95 
TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J7 TCGA-AO-A0J8 
       29.13        21.40        52.18        26.04        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       53.03        21.53        50.70        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       65.10        26.24        50.24        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27        99.25       108.72       106.78       108.03        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        64.04        57.30        48.36        41.62        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04L TCGA-AQ-A0Y5 
       14.73        82.62        70.39         0.53       130.09         5.65 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TQ 
       15.62        32.52        32.91        19.20       140.55        98.33 
TCGA-AR-A0TR TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0TZ TCGA-AR-A0U0 
        5.26       109.02        75.22        64.83       107.24        65.36 
TCGA-AR-A0U2 TCGA-AR-A0U4 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       107.21       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AM TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
       97.68        98.33        96.00        86.07        93.90        99.32 
TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24L 
       37.81        61.28        86.53        86.43       160.90        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27        77.69       105.30        32.58        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       98.66        89.00        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
       20.25        86.53        54.21        66.15        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP 
       39.39        40.54        57.27        73.35        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0IA TCGA-B6-A0IB 
       10.59        77.62       143.38       281.29       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IM TCGA-B6-A0IN 
       50.70        65.72       146.50       112.37       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
      165.76       129.07       140.88       255.68        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      234.28        78.02       263.28       162.05       102.77       140.48 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WW 
       89.46       282.90       157.41        97.48        79.63        18.35 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      113.79       206.86       129.70        28.27        68.94        58.88 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A401 
       43.59       101.52        73.51       170.17        37.87        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
       70.16        68.12        18.84       103.63        71.15        62.93 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        40.83        39.55 
TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       70.22        81.63        37.22        32.02        18.21        43.53 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ TCGA-BH-A0BS 
       21.70        74.89        61.68        72.23        74.14        53.95 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD 
       45.57        49.94        77.95        44.02        89.06        45.83 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       77.98        23.44        29.98        13.91        78.28        17.26 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        38.47        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
       16.27         4.41        14.30         9.63        44.81        46.19 
TCGA-BH-A0EA TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       32.58        24.49        24.43        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       37.78        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
       20.38         5.85         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05        32.91         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
       20.12        90.84        26.66        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
       55.63        66.05        51.39        67.50        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F5 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FB 
       25.81        31.53        89.16        97.48        24.62       120.62 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FR 
       74.73       122.89        36.92        63.35        55.00       144.59 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       72.07        28.14        26.14        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ 
       18.64        23.51         9.63         5.26         9.70        18.87 
TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       21.76         9.44        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
       13.51         1.87         4.11         4.08        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HO 
       11.34        11.28        12.03        10.42        12.33        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A273 TCGA-C8-A274 
       20.25        12.53        12.36        12.95         9.67         9.53 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.50        24.56        14.43        33.99        12.95 
TCGA-C8-A8HP TCGA-C8-A8HR TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       13.02        13.41        19.46        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A146 TCGA-D8-A147 
       20.58        13.97        14.17        13.48        21.14        19.20 
TCGA-D8-A1J8 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       14.17        16.50        55.50        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JM 
       12.03        53.00        14.01        18.97        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.38        21.01        12.20        13.32        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       17.79        16.73        25.74        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS 
       14.73        19.92        17.69        55.30        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1Y1 
       16.64        12.99        15.16        43.04        16.54         9.93 
TCGA-D8-A1Y2 TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       14.24        17.42        13.45        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
       13.48         4.80         1.61        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18        12.66        25.22 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.24        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       31.96        69.34        18.51        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        14.79        25.05        22.82        17.29 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15T TCGA-E2-A1AZ 
       11.05        50.79        19.56        56.94        51.39        76.57 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BC 
       53.62        87.22        33.01        32.35        28.50        16.47 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L8 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        73.64        19.66        24.59        75.81        28.90 
TCGA-E2-A1LG TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX 
       50.07       102.61         8.75        43.04        34.55        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
        8.28        30.61        38.76        34.29        17.69        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N6 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       32.88        22.29        34.16        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       35.77        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1RA 
       28.27        34.95         2.56         6.12         3.02        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI 
       32.09        40.24         1.12         6.58        21.27        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       41.72        40.50        20.12        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA 
       24.56        12.33        29.72         9.47        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-E9-A6HE TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       26.40        27.85        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.90        13.25        16.57        15.68        28.77        25.94 
TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 
       22.82        29.95        29.85        41.13        39.78        52.96 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       23.11        18.48        30.08        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FS 
       13.94        10.52        14.43        34.55        19.96        52.73 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 
       22.09        34.03        17.49        10.16        23.51        15.22 
TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GM-A2D9 
       16.77        24.99        31.30        33.21         7.40        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DD TCGA-GM-A2DI TCGA-GM-A2DK 
      216.76        79.10        83.34        75.02        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY 
      115.69       106.06       101.62        85.35       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB 
       43.73        66.38        72.03        13.55        18.12        62.47 
TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U TCGA-LD-A7W5 TCGA-LD-A7W6 TCGA-LD-A9QF 
       11.84        21.24        13.22         7.10        13.28        10.62 
TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YL TCGA-LL-A5YM 
       24.95        32.75        29.23        25.05        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A73Y 
       14.70        14.47        22.26         2.63        16.08        15.68 
TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LL-A9Q3 TCGA-LQ-A4E4 
        7.46        14.50        19.53        12.36        17.49        27.91 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
        2.10        36.30        58.52        31.99        58.62        40.08 
TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H TCGA-OL-A66I 
       34.92        28.87        24.72        22.32        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A66N TCGA-OL-A66P TCGA-OL-A6VQ 
       65.62        41.92        42.77        26.04        14.07        19.73 
TCGA-OL-A6VR TCGA-OL-A97C TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY 
       40.11         8.91        47.01        64.21        86.96         0.26 
TCGA-PL-A8LZ TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-S3-AA11 
        9.93        18.81        18.48        21.07        19.27        13.84 
TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 TCGA-UL-AAZ6 TCGA-UU-A93S 
       18.87        17.39        17.26        13.94        17.03         3.81 
TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 
       66.84        11.41        52.96        15.35        16.04       108.07 
TCGA-Z7-A8R6 
      107.05 

  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                        0.16                         0.03 
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                       245.1                        282.9 
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                       26.93                        28.27 
[1] "0.2 - 245.1 (26.9)" "0.0 - 282.9 (28.3)"
[1] "hr=" "1.3"
D67V2, continuous
                              vv
clus                           STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 38(20P13) MUTATED        10       12        1        0        60
  DEL PEAK 38(20P13) WILD-TYPE      79       73        5        6       293
                              vv
clus                           STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 38(20P13) MUTATED          34         0         25          6
  DEL PEAK 38(20P13) WILD-TYPE       218         2        129         23
                              vv
clus                           STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 38(20P13) MUTATED            7        5         0       0
  DEL PEAK 38(20P13) WILD-TYPE         58       15         1      13
D67V3, multiclass
            clus
vv           DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  STAGE I                            10                           79
  STAGE IA                           12                           73
  STAGE IB                            1                            5
  STAGE II                            0                            6
  STAGE IIA                          60                          293
  STAGE IIB                          34                          218
  STAGE III                           0                            2
  STAGE IIIA                         25                          129
  STAGE IIIB                          6                           23
  STAGE IIIC                          7                           58
  STAGE IV                            5                           15
  STAGE TIS                           0                            1
  STAGE X                             0                           13
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            T1  T2  T3  T4
  DEL PEAK 38(20P13) MUTATED    36 101  16   7
  DEL PEAK 38(20P13) WILD-TYPE 240 523 120  33
D67V4, multiclass
    clus
vv   DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  T1                         36                          240
  T2                        101                          523
  T3                         16                          120
  T4                          7                           33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                            N0  N1  N2  N3
  DEL PEAK 38(20P13) MUTATED    76  52  19  11
  DEL PEAK 38(20P13) WILD-TYPE 431 306 100  66
D67V5, multiclass
    clus
vv   DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  N0                         76                          431
  N1                         52                          306
  N2                         19                          100
  N3                         11                           66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V6, binary
                              cls
clus                             0   1
  DEL PEAK 38(20P13) MUTATED   133   6
  DEL PEAK 38(20P13) WILD-TYPE 756  16
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 38(20P13) MUTATED    133    6
  DEL PEAK 38(20P13) WILD-TYPE  756   16
   clus
vv  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  0                        133                          756
  1                          6                           16
[1] 2 2
[1] FALSE
D67V7, binary
                              cls
clus                             0   1
  DEL PEAK 38(20P13) MUTATED   157   3
  DEL PEAK 38(20P13) WILD-TYPE 911   9
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 38(20P13) MUTATED    157    3
  DEL PEAK 38(20P13) WILD-TYPE  911    9
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  FEMALE                        157                          911
  MALE                            3                            9
[1] 2 2
[1] FALSE
D67V8, binary
                              cls
clus                             0   1
  DEL PEAK 38(20P13) MUTATED    55  83
  DEL PEAK 38(20P13) WILD-TYPE 374 435
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 38(20P13) MUTATED     55   83
  DEL PEAK 38(20P13) WILD-TYPE  374  435
     clus
vv    DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  NO                          55                          374
  YES                         83                          435
[1] 2 2
[1] FALSE
                              vv
clus                           INFILTRATING CARCINOMA NOS
  DEL PEAK 38(20P13) MUTATED                            1
  DEL PEAK 38(20P13) WILD-TYPE                          0
                              vv
clus                           INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 38(20P13) MUTATED                             137
  DEL PEAK 38(20P13) WILD-TYPE                           633
                              vv
clus                           INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 38(20P13) MUTATED                               11
  DEL PEAK 38(20P13) WILD-TYPE                            189
                              vv
clus                           MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 38(20P13) MUTATED                     2                     0
  DEL PEAK 38(20P13) WILD-TYPE                   4                     9
                              vv
clus                           MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 38(20P13) MUTATED                                  2
  DEL PEAK 38(20P13) WILD-TYPE                               27
                              vv
clus                           MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 38(20P13) MUTATED                    1              6
  DEL PEAK 38(20P13) WILD-TYPE                 16             41
D67V9, multiclass
                                  clus
vv                                 DEL PEAK 38(20P13) MUTATED
  INFILTRATING CARCINOMA NOS                                1
  INFILTRATING DUCTAL CARCINOMA                           137
  INFILTRATING LOBULAR CARCINOMA                           11
  MEDULLARY CARCINOMA                                       2
  METAPLASTIC CARCINOMA                                     0
  MIXED HISTOLOGY (PLEASE SPECIFY)                          2
  MUCINOUS CARCINOMA                                        1
  OTHER  SPECIFY                                            6
                                  clus
vv                                 DEL PEAK 38(20P13) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             633
  INFILTRATING LOBULAR CARCINOMA                            189
  MEDULLARY CARCINOMA                                         4
  METAPLASTIC CARCINOMA                                       9
  MIXED HISTOLOGY (PLEASE SPECIFY)                           27
  MUCINOUS CARCINOMA                                         16
  OTHER  SPECIFY                                             41
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V10, continuous
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 38(20P13) MUTATED                                  0    11
  DEL PEAK 38(20P13) WILD-TYPE                                1    49
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 38(20P13) MUTATED                          34    98
  DEL PEAK 38(20P13) WILD-TYPE                       147   647
D67V11, multiclass
                                  clus
vv                                 DEL PEAK 38(20P13) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                    11
  BLACK OR AFRICAN AMERICAN                                34
  WHITE                                                    98
                                  clus
vv                                 DEL PEAK 38(20P13) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      49
  BLACK OR AFRICAN AMERICAN                                 147
  WHITE                                                     647
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V12, binary
                              cls
clus                             0   1
  DEL PEAK 38(20P13) MUTATED     4 127
  DEL PEAK 38(20P13) WILD-TYPE  35 748
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 38(20P13) MUTATED      4  127
  DEL PEAK 38(20P13) WILD-TYPE   35  748
                        clus
vv                       DEL PEAK 38(20P13) MUTATED
  HISPANIC OR LATINO                              4
  NOT HISPANIC OR LATINO                        127
                        clus
vv                       DEL PEAK 38(20P13) WILD-TYPE
  HISPANIC OR LATINO                               35
  NOT HISPANIC OR LATINO                          748
[1] 2 2
[1] FALSE

Clustering(68) Variable = DEL PEAK 39(21Q11.2) MUTATION ANALYSIS
D68V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 39(21Q11.2) MUTATED   183  31
  DEL PEAK 39(21Q11.2) WILD-TYPE 734 116
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                           214                            850 
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                            31                            116 
$`DEL PEAK 39(21Q11.2) MUTATED`
TCGA-3C-AALI TCGA-3C-AALJ TCGA-5L-AAT1 TCGA-A1-A0SN TCGA-A2-A04T TCGA-A2-A0CW 
      131.67        42.81        48.36        39.32        73.84       107.93 
TCGA-A2-A0D0 TCGA-A2-A0EU TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0YT TCGA-A2-A1FV 
       67.33        34.29        54.64        27.12        23.77        23.47 
TCGA-A2-A1FW TCGA-A2-A1G1 TCGA-A2-A25B TCGA-A2-A3Y0 TCGA-A7-A0CE TCGA-A7-A0CJ 
       17.36        19.20        42.44        50.83        35.31        30.61 
TCGA-A7-A26G TCGA-A7-A4SD TCGA-A7-A6VX TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06U 
       23.74        14.50        10.42        13.02        17.98        29.03 
TCGA-A8-A079 TCGA-A8-A07R TCGA-A8-A08F TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
        9.01         8.98        33.01        19.96        12.00        37.05 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08S TCGA-A8-A09A TCGA-A8-A09B 
       31.00        31.00         0.99        33.01         9.99        12.00 
TCGA-A8-A09I TCGA-A8-A09R TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A9 TCGA-AC-A2FE 
       45.07         8.98        19.04        13.02        27.02        86.66 
TCGA-AC-A5XU TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AC-A8OQ TCGA-AN-A049 TCGA-AN-A04A 
       14.96         8.22        20.19         1.12         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        1.78         0.16         0.33         6.44         5.65         7.96 
TCGA-AN-A0FV TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AO-A03M 
        0.33         0.33         0.33         0.33         0.33        61.35 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A0J3 TCGA-AO-A0J7 TCGA-AO-A0JB TCGA-AO-A0JD 
       95.70        68.75        21.40        20.32        50.70        72.00 
TCGA-AO-A0JE TCGA-AO-A124 TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A54O TCGA-AQ-A7U7 
       76.77       115.27       130.09         5.65        32.91        19.20 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TV TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U1 
       84.10       109.02        75.22        55.86       107.24       133.22 
TCGA-AR-A0U2 TCGA-AR-A1AH TCGA-AR-A1AP TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A24M 
       83.87       125.16        93.90        94.29        86.53       120.33 
TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A250 TCGA-AR-A252 
       97.84        77.69       105.30        32.58        89.00        93.30 
TCGA-AR-A2LK TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IK TCGA-B6-A0RH TCGA-B6-A0RP 
       54.21       129.57        65.72        18.77       212.25       102.77 
TCGA-B6-A0RS TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0X7 TCGA-B6-A1KC 
      100.70        79.63        18.35       113.79        58.88        43.59 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A400 TCGA-B6-A408 TCGA-BH-A0AU TCGA-BH-A0B9 
      139.17       170.17         7.07        68.12        62.93        51.68 
TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0DE TCGA-BH-A0DP TCGA-BH-A0E2 TCGA-BH-A0H7 
       74.89        76.60        77.98        15.65        14.30        23.08 
TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A18L TCGA-BH-A18V 
       12.89        27.25        50.79        23.93        26.66        51.16 
TCGA-BH-A1F2 TCGA-BH-A1FM TCGA-BH-A5J0 TCGA-C8-A12O TCGA-C8-A12Q TCGA-C8-A12U 
       31.53        45.63        23.51        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A130 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HK 
       12.66         3.16         4.11         4.08        10.92        12.03 
TCGA-C8-A1HN TCGA-C8-A26W TCGA-C8-A27B TCGA-C8-A8HP TCGA-C8-A8HQ TCGA-C8-A8HR 
       12.95        12.53        14.43        13.02        12.49        13.41 
TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JF 
       13.48        14.17        55.50        15.78        18.15        12.03 
TCGA-D8-A1JM TCGA-D8-A1X6 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XJ TCGA-D8-A1XL 
       19.40        17.79        27.58        18.15        21.80        19.92 
TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y3 
       15.85        16.64        16.54        15.32         9.93        14.14 
TCGA-D8-A27T TCGA-D8-A27W TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10C 
       13.08        12.26        43.00        34.42        46.59        40.11 
TCGA-E2-A14Y TCGA-E2-A152 TCGA-E2-A15A TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15H 
       69.34        69.96        23.34        20.71        18.21        12.92 
TCGA-E2-A1IH TCGA-E2-A1IO TCGA-E2-A1L8 TCGA-E2-A1LL TCGA-E2-A56Z TCGA-E2-A574 
       33.73        60.99        73.64        43.04         8.28        38.76 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NF TCGA-E9-A1NH TCGA-E9-A1R0 TCGA-E9-A1R4 
       34.16        36.20        35.24        18.94        28.27         6.12 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RG TCGA-E9-A226 TCGA-E9-A228 TCGA-E9-A22A 
       45.01        32.09        21.27        34.45        42.25        39.09 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A295 TCGA-E9-A3QA TCGA-E9-A5FL TCGA-EW-A1IW 
       38.99         1.94        12.33        30.18         0.79        12.20 
TCGA-EW-A1J6 TCGA-EW-A1OY TCGA-EW-A2FS TCGA-EW-A6SA TCGA-EW-A6SD TCGA-GI-A2C8 
       28.77        29.85        52.73        16.77        33.21         7.40 
TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DL TCGA-GM-A4E0 TCGA-HN-A2NL TCGA-JL-A3YX 
      109.87        79.10       115.69        72.03         2.60        11.57 
TCGA-LD-A7W5 TCGA-LL-A5YM TCGA-LL-A7SZ TCGA-OL-A5RZ TCGA-OL-A66N TCGA-OL-A6VQ 
        7.10        15.32        19.53        22.32        26.04        19.73 
TCGA-PL-A8LX TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-AA17 
        0.16        18.81        18.48        13.94 

$`DEL PEAK 39(21Q11.2) WILD-TYPE`
TCGA-3C-AAAU TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5T-A9QA TCGA-A1-A0SB 
      129.14        40.14        11.44        48.56         9.96         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SO TCGA-A1-A0SP TCGA-A1-A0SQ 
       13.68        31.79         7.96        28.01        19.20        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U TCGA-A2-A04V 
      143.15        18.02        78.41       121.94        87.25        63.12 
TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A04Y TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM 
      101.98        55.43        36.13       136.73        99.12        24.79 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
      114.81        92.48        88.60       107.93        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
        5.19        98.99        56.81        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72        89.36        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       74.40        72.00        35.05        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       63.29        99.19        44.88        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.13         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.56        16.47        52.47 
TCGA-A2-A25A TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
      107.70        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       47.31        35.93        50.37         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        38.30        34.29 
TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       35.47        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A13H TCGA-A7-A26E TCGA-A7-A26F 
       20.19        25.15        23.61        29.56        31.36        24.26 
TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ 
       23.80        21.73        20.61        22.32        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3J1 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A426 TCGA-A7-A4SA 
       10.29        11.28        13.41        14.70        11.97        14.93 
TCGA-A7-A4SB TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       13.74        21.17        17.92        14.73        12.10        10.72 
TCGA-A7-A5ZX TCGA-A7-A6VV TCGA-A7-A6VW TCGA-A7-A6VY TCGA-A8-A06O TCGA-A8-A06Q 
       11.05        10.29         9.37         8.75        13.02         1.02 
TCGA-A8-A06T TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       53.06        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A07B TCGA-A8-A07E TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        19.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         7.99        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A084 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        15.06        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08L TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A091 
       28.96         9.99       112.08        43.00        40.01        33.01 
TCGA-A8-A092 TCGA-A8-A093 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09C 
       30.97        17.95        41.98        12.00         9.99         1.02 
TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09K TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
       50.04        49.05        29.98        33.07         1.02        25.02 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A6 
       19.04        15.02         0.99        14.01        12.00        21.04 
TCGA-A8-A0A7 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
        0.99        17.03        38.04         0.95        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FF 
        5.72         1.48        73.05        99.35        40.57        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3QQ TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A3W7 
       24.13        25.05        14.99        16.57        19.79        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EH TCGA-AC-A5EI TCGA-AC-A5XS 
       23.24        24.79        29.26        16.80        14.53        19.33 
TCGA-AC-A62V TCGA-AC-A62X TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IW TCGA-AC-A6IX 
       11.44        13.71        17.42        18.67        13.58        12.26 
TCGA-AC-A6NO TCGA-AC-A7VC TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X TCGA-AN-A03Y 
        1.68         0.03         1.32         2.30         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        0.23         0.33         1.71         9.96         7.36         7.46 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        0.33         0.33         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        7.04         0.36         0.33         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.30         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       66.77        81.63        47.87        58.95        29.13        32.78 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       52.18        26.04        37.48        22.36        53.03        21.53 
TCGA-AO-A0JC TCGA-AO-A0JF TCGA-AO-A0JG TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        65.10        26.24        50.24        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
       71.80        99.25       108.72       106.78       108.03        90.58 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        64.04        57.30        48.36        41.62        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KQ TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AO-A1KT 
       14.73        82.62        61.87        70.39         0.53        17.79 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AQ-A54N TCGA-AR-A0TP 
       24.79        26.93        15.62        32.52         2.56       140.55 
TCGA-AR-A0TQ TCGA-AR-A0TR TCGA-AR-A0TW TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A0U3 
       98.33         5.26        98.93        64.83        65.36       134.14 
TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AM 
      107.21       108.36       101.00       103.86        97.68        98.33 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ TCGA-AR-A1AR TCGA-AR-A1AS TCGA-AR-A1AV 
       96.00        86.07        99.32        17.23        37.81        61.28 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24N 
       86.43        33.73       160.90        50.89        94.22        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24X 
      118.59         2.76       104.28       112.77       105.27        98.76 
TCGA-AR-A24Z TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       98.66        99.62        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        66.15        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       40.54        57.27        73.35        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC 
       77.62       143.38       281.29        12.13       275.87        50.70 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      146.50       112.37       233.62       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RI TCGA-B6-A0RL 
      129.07       140.88       255.68        68.45       234.28        81.17 
TCGA-B6-A0RM TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
       78.02       263.28       162.05       140.48        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WX TCGA-B6-A0WZ TCGA-B6-A0X0 
      157.41        97.48       188.68        21.47       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A3ZX 
      245.10        28.27        68.94       101.52        73.51        37.87 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AV 
       85.35        70.16        18.84       103.63        71.15        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B2 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        40.83        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0BA TCGA-BH-A0BC 
       39.16        70.22        81.63        84.13        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       18.21        43.53        61.51        21.70        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       75.48        74.14        53.95        45.57        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       49.05        41.75        44.02        89.06        90.97        45.83 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DO 
       23.44        38.01        29.98        13.91        78.28        17.26 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        38.47        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA 
        4.41        15.68         9.63        44.81        46.19        32.58 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        24.43        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       37.78        53.26        24.56        41.00        52.96        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HW 
       20.38         5.85         2.50        13.61        36.85        51.32 
TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
        5.59        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18M TCGA-BH-A18N 
        4.90        35.93        20.12        90.84        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       67.50        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F5 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        89.16        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FB TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       24.62       120.62       114.15        33.17        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       36.92        63.35        55.00        72.07       144.59        72.07 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       28.14        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       10.65         6.44        20.12        10.52       109.28        20.88 
TCGA-BH-A5IZ TCGA-BH-A6R8 TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 
       18.64         9.63         5.26         9.70        18.87        21.76 
TCGA-BH-AB28 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12V 
        9.44        11.93        11.77        11.77        11.77        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       12.66        48.53        12.56        13.51         1.87        12.59 
TCGA-C8-A135 TCGA-C8-A1HE TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HL 
       12.92        12.33        11.34        11.28         0.16        10.42 
TCGA-C8-A1HM TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
       12.33        12.33        20.25        12.36        12.95         8.28 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 
        9.67         9.53         0.03         9.50        24.56        33.99 
TCGA-C8-A3M8 TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 
       12.95        19.46        56.81        20.88        13.25        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A146 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA 
       13.97        14.17        21.14        19.20        17.49        16.50 
TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       18.90        53.00        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       20.09        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XC TCGA-D8-A1XD 
       18.58        16.73        25.74        23.90        12.39        17.16 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       15.22        14.73        14.50        17.69        55.30        16.41 
TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1Y0 TCGA-D8-A1Y2 
       16.31        12.99        15.16        43.04        15.52        14.24 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27V 
       16.41        13.48         4.80         1.61        10.09        12.53 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-D8-A73U TCGA-D8-A73W TCGA-D8-A73X 
       33.37        18.51        21.67        16.18        12.66        25.22 
TCGA-E2-A108 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       27.52        40.41        37.51        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T 
       44.68        40.96        38.24        38.60        33.17        75.98 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 
       43.33        34.26        32.02        31.96        18.51        63.62 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A158 TCGA-E2-A159 
       23.24        19.43        21.04        23.87        14.79        25.05 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15F TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       22.82        17.29        21.63        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
       20.58        11.05        50.79        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       28.50        16.47        37.25        77.65        37.41        70.36 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IU 
       33.70        28.44        59.18         3.88        22.19        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LG TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A2P5 TCGA-E2-A2P6 
       50.07       106.75       102.61         8.75        26.99        34.55 
TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A576 TCGA-E2-A9RU TCGA-E9-A1N3 
       43.56        30.61        34.92        34.29        17.69        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N6 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       32.88        36.82        22.29        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R3 
       35.77        25.84         9.86        24.82        34.95         2.56 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
        3.02        11.15        48.23        40.24         1.12        46.65 
TCGA-E9-A1RF TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22B 
        6.58        46.59        47.64        32.05        37.74        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
        7.13        24.56        29.72         9.47        38.07        32.91 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP 
       30.44        23.90        23.84        26.70        25.81        26.40 
TCGA-E9-A6HE TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       27.85        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J5 TCGA-EW-A1OV TCGA-EW-A1OW TCGA-EW-A1OX TCGA-EW-A1OZ 
       16.57        15.68        25.94        22.82        29.95        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P3 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       41.13        39.78        52.96        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FV 
       10.52        14.43        34.55        19.96        55.00        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A424 TCGA-EW-A6S9 
       22.09        34.03        17.49        10.16        23.51        15.22 
TCGA-EW-A6SB TCGA-EW-A6SC TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DD 
       24.99        31.30        59.57       216.76        83.34        75.02 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DM TCGA-GM-A2DN 
       70.85        72.10        85.15        86.96       106.06       101.62 
TCGA-GM-A2DO TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
       85.35       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LD-A66U TCGA-LD-A74U 
       13.55        18.12        62.47        11.84        21.24        13.22 
TCGA-LD-A7W6 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A442 TCGA-LL-A50Y 
       13.28        10.62        24.95        32.75        29.23        25.05 
TCGA-LL-A5YL TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A5YP TCGA-LL-A6FP TCGA-LL-A6FQ 
       17.06        14.70        14.47        14.79        22.26         2.63 
TCGA-LL-A6FR TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A7T0 TCGA-LL-A8F5 
       16.08        15.68         7.46        14.50        12.36        19.59 
TCGA-LL-A9Q3 TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       17.49        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       31.99        58.62        40.08        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       24.72        20.38        26.70        23.47        65.62        41.92 
TCGA-OL-A66L TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VO TCGA-OL-A6VR TCGA-OL-A97C 
       42.77        17.36        14.07        28.21        40.11         8.91 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LY TCGA-PL-A8LZ TCGA-S3-A6ZH 
       47.01        64.21        86.96         0.26         9.93        21.07 
TCGA-S3-AA0Z TCGA-S3-AA10 TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 
       20.68        19.27        13.84        18.87        17.39        17.26 
TCGA-UL-AAZ6 TCGA-UU-A93S TCGA-V7-A7HQ TCGA-W8-A86G TCGA-WT-AB41 TCGA-WT-AB44 
       17.03         3.81        66.84        11.41        52.96        29.03 
TCGA-XX-A899 TCGA-XX-A89A TCGA-Z7-A8R5 TCGA-Z7-A8R6 
       15.35        16.04       108.07       107.05 

  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                        212.25                         282.90 
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                        24.985                         28.440 
[1] "0.2 - 212.2 (25.0)" "0.0 - 282.9 (28.4)"
[1] "hr=" "1.1"
D68V2, continuous
                                vv
clus                             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 39(21Q11.2) MUTATED        12       12        0        1        66
  DEL PEAK 39(21Q11.2) WILD-TYPE      77       73        6        5       287
                                vv
clus                             STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 39(21Q11.2) MUTATED          54         1         39         12
  DEL PEAK 39(21Q11.2) WILD-TYPE       198         1        115         17
                                vv
clus                             STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 39(21Q11.2) MUTATED            9        7         1       3
  DEL PEAK 39(21Q11.2) WILD-TYPE         56       13         0      10
D68V3, multiclass
            clus
vv           DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  STAGE I                              12                             77
  STAGE IA                             12                             73
  STAGE IB                              0                              6
  STAGE II                              1                              5
  STAGE IIA                            66                            287
  STAGE IIB                            54                            198
  STAGE III                             1                              1
  STAGE IIIA                           39                            115
  STAGE IIIB                           12                             17
  STAGE IIIC                            9                             56
  STAGE IV                              7                             13
  STAGE TIS                             1                              0
  STAGE X                               3                             10
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 39(21Q11.2) MUTATED    41 139  23  13
  DEL PEAK 39(21Q11.2) WILD-TYPE 235 485 113  27
D68V4, multiclass
    clus
vv   DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  T1                           41                            235
  T2                          139                            485
  T3                           23                            113
  T4                           13                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                              N0  N1  N2  N3
  DEL PEAK 39(21Q11.2) MUTATED    90  74  37  13
  DEL PEAK 39(21Q11.2) WILD-TYPE 417 284  82  64
D68V5, multiclass
    clus
vv   DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  N0                           90                            417
  N1                           74                            284
  N2                           37                             82
  N3                           13                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V6, binary
                                cls
clus                               0   1
  DEL PEAK 39(21Q11.2) MUTATED   180   8
  DEL PEAK 39(21Q11.2) WILD-TYPE 709  14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(21Q11.2) MUTATED    180    8
  DEL PEAK 39(21Q11.2) WILD-TYPE  709   14
   clus
vv  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  0                          180                            709
  1                            8                             14
[1] 2 2
[1] FALSE
D68V7, binary
                                cls
clus                               0   1
  DEL PEAK 39(21Q11.2) MUTATED   215   2
  DEL PEAK 39(21Q11.2) WILD-TYPE 853  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(21Q11.2) MUTATED    215    2
  DEL PEAK 39(21Q11.2) WILD-TYPE  853   10
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  FEMALE                          215                            853
  MALE                              2                             10
[1] 2 2
[1] FALSE
D68V8, binary
                                cls
clus                               0   1
  DEL PEAK 39(21Q11.2) MUTATED    97 104
  DEL PEAK 39(21Q11.2) WILD-TYPE 332 414
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(21Q11.2) MUTATED     97  104
  DEL PEAK 39(21Q11.2) WILD-TYPE  332  414
     clus
vv    DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  NO                            97                            332
  YES                          104                            414
[1] 2 2
[1] FALSE
                                vv
clus                             INFILTRATING CARCINOMA NOS
  DEL PEAK 39(21Q11.2) MUTATED                            0
  DEL PEAK 39(21Q11.2) WILD-TYPE                          1
                                vv
clus                             INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 39(21Q11.2) MUTATED                             176
  DEL PEAK 39(21Q11.2) WILD-TYPE                           594
                                vv
clus                             INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 39(21Q11.2) MUTATED                               21
  DEL PEAK 39(21Q11.2) WILD-TYPE                            179
                                vv
clus                             MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 39(21Q11.2) MUTATED                     2                     2
  DEL PEAK 39(21Q11.2) WILD-TYPE                   4                     7
                                vv
clus                             MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 39(21Q11.2) MUTATED                                  9
  DEL PEAK 39(21Q11.2) WILD-TYPE                               20
                                vv
clus                             MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 39(21Q11.2) MUTATED                    2              5
  DEL PEAK 39(21Q11.2) WILD-TYPE                 15             42
D68V9, multiclass
                                  clus
vv                                 DEL PEAK 39(21Q11.2) MUTATED
  INFILTRATING CARCINOMA NOS                                  0
  INFILTRATING DUCTAL CARCINOMA                             176
  INFILTRATING LOBULAR CARCINOMA                             21
  MEDULLARY CARCINOMA                                         2
  METAPLASTIC CARCINOMA                                       2
  MIXED HISTOLOGY (PLEASE SPECIFY)                            9
  MUCINOUS CARCINOMA                                          2
  OTHER  SPECIFY                                              5
                                  clus
vv                                 DEL PEAK 39(21Q11.2) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                    1
  INFILTRATING DUCTAL CARCINOMA                               594
  INFILTRATING LOBULAR CARCINOMA                              179
  MEDULLARY CARCINOMA                                           4
  METAPLASTIC CARCINOMA                                         7
  MIXED HISTOLOGY (PLEASE SPECIFY)                             20
  MUCINOUS CARCINOMA                                           15
  OTHER  SPECIFY                                               42
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V10, continuous
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 39(21Q11.2) MUTATED                                  0    17
  DEL PEAK 39(21Q11.2) WILD-TYPE                                1    43
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 39(21Q11.2) MUTATED                          40   137
  DEL PEAK 39(21Q11.2) WILD-TYPE                       141   608
D68V11, multiclass
                                  clus
vv                                 DEL PEAK 39(21Q11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      17
  BLACK OR AFRICAN AMERICAN                                  40
  WHITE                                                     137
                                  clus
vv                                 DEL PEAK 39(21Q11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        43
  BLACK OR AFRICAN AMERICAN                                   141
  WHITE                                                       608
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V12, binary
                                cls
clus                               0   1
  DEL PEAK 39(21Q11.2) MUTATED     6 178
  DEL PEAK 39(21Q11.2) WILD-TYPE  33 697
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(21Q11.2) MUTATED      6  178
  DEL PEAK 39(21Q11.2) WILD-TYPE   33  697
                        clus
vv                       DEL PEAK 39(21Q11.2) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                          178
                        clus
vv                       DEL PEAK 39(21Q11.2) WILD-TYPE
  HISPANIC OR LATINO                                 33
  NOT HISPANIC OR LATINO                            697
[1] 2 2
[1] FALSE

Clustering(69) Variable = DEL PEAK 40(22Q13.32) MUTATION ANALYSIS
D69V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 40(22Q13.32) MUTATED   423  66
  DEL PEAK 40(22Q13.32) WILD-TYPE 494  81
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                            489                             575 
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                             66                              81 
$`DEL PEAK 40(22Q13.32) MUTATED`
TCGA-3C-AAAU TCGA-3C-AALI TCGA-3C-AALJ TCGA-A1-A0SD TCGA-A1-A0SG TCGA-A1-A0SJ 
      129.14       131.67        42.81        14.37        14.27        13.68 
TCGA-A1-A0SK TCGA-A1-A0SN TCGA-A1-A0SO TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
       31.79        39.32        28.01       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CP 
      121.94        63.12        36.13        99.12        24.79        92.48 
TCGA-A2-A0CQ TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
       88.60       107.93        77.19         5.19        98.99       107.93 
TCGA-A2-A0D0 TCGA-A2-A0D4 TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0ET TCGA-A2-A0EU 
       67.33        25.22        89.36        80.28        35.05        34.29 
TCGA-A2-A0EW TCGA-A2-A0SU TCGA-A2-A0SX TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T6 
       61.94        54.64        50.43        49.84        20.52        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       20.75        25.28        18.21        50.47        21.90        21.67 
TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A25A TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A3XS 
       23.77        17.36       107.70        42.44        17.19        33.93 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RY TCGA-A7-A0CE 
       35.93        50.37        50.83         7.30        21.30        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0DB TCGA-A7-A13E TCGA-A7-A13H 
       34.29        35.47        30.61        33.11        20.19        29.56 
TCGA-A7-A26E TCGA-A7-A26I TCGA-A7-A26J TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A4SB 
       31.36        21.73        20.61        11.28        11.97        13.74 
TCGA-A7-A4SD TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A6VW TCGA-A7-A6VY 
       14.50        17.92        14.73        12.10         9.37         8.75 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A06X 
       13.02         1.02        17.98        53.06        29.03        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07E 
       26.01         1.02        17.03        53.98        43.00        19.99 
TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07W TCGA-A8-A084 TCGA-A8-A085 
       18.97        14.01        12.00         9.99        15.06        36.95 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08O TCGA-A8-A08S TCGA-A8-A08Z 
       19.96        12.00        37.05        31.00        33.01        40.01 
TCGA-A8-A09B TCGA-A8-A09C TCGA-A8-A09D TCGA-A8-A09E TCGA-A8-A09M TCGA-A8-A09N 
       12.00         1.02        50.04        49.05        33.07         1.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09W TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        8.98        19.04         0.99        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23G TCGA-AC-A2FF TCGA-AC-A2FM 
        0.99        27.02        17.03        73.91        90.71        26.04 
TCGA-AC-A2QH TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3W7 
       33.04        32.45        16.31        22.19        25.05        15.48 
TCGA-AC-A5EH TCGA-AC-A5XS TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AC-A6IV TCGA-AC-A6IX 
       16.80        19.33        14.96        17.42        18.67        12.26 
TCGA-AC-A6NO TCGA-AC-A7VB TCGA-AC-A8OP TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A0AJ 
        1.68         8.22        20.19         0.23         0.62         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK 
        7.36         7.46         0.33         6.44         5.65         7.00 
TCGA-AN-A0FW TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0XO TCGA-AN-A0XR TCGA-AN-A0XS 
        0.36         0.33         0.33        12.33         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03P TCGA-AO-A0J3 
        0.33         0.33        80.28        66.77        95.70        21.40 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JD 
       20.32        22.36        53.03        21.53        50.70        72.00 
TCGA-AO-A0JG TCGA-AO-A124 TCGA-AO-A12A TCGA-AO-A12E TCGA-AO-A1KP TCGA-AO-A1KQ 
       26.24       115.27        90.58        57.30        82.62        61.87 
TCGA-AO-A1KS TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AQ-A7U7 TCGA-AR-A0TP TCGA-AR-A0TR 
        0.53         2.56        32.91        19.20       140.55         5.26 
TCGA-AR-A0TS TCGA-AR-A0TT TCGA-AR-A0TW TCGA-AR-A0TY TCGA-AR-A0TZ TCGA-AR-A0U0 
       84.10       109.02        98.93        55.86       107.24        65.36 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AJ TCGA-AR-A1AM TCGA-AR-A1AP TCGA-AR-A1AQ 
      134.14       125.16       101.00        98.33        93.90        99.32 
TCGA-AR-A1AR TCGA-AR-A1AV TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24O 
       17.23        61.28        33.73       160.90        50.89       118.59 
TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
        2.76       112.77        97.84        32.58        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LK 
       89.00        99.62        93.30        71.05        93.83        54.21 
TCGA-AR-A2LO TCGA-AR-A5QP TCGA-B6-A0IG TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE 
       39.39        38.96       146.50       165.76       140.88       255.68 
TCGA-B6-A0RG TCGA-B6-A0RL TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RS 
       68.45        81.17       263.28       162.05       102.77       100.70 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A1KN TCGA-B6-A3ZX TCGA-B6-A408 TCGA-B6-A409 
       18.35        21.47       139.17        37.87        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B4 
      103.63        71.15        25.55        81.44        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B6 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BF 
       70.22        81.63        84.13        51.68        37.22        43.53 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ 
       21.70        74.89        76.60        45.57        49.94        49.05 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DH TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0E0 
       89.06        90.97        38.01        78.28         3.22         4.41 
TCGA-BH-A0E6 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H9 
        9.63        24.49        31.00        30.35        10.78        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0RX TCGA-BH-A0W3 
       52.96        26.50        36.85        12.89         5.59        23.93 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J 
       42.35        44.81        23.05        32.91        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18T TCGA-BH-A1ES TCGA-BH-A1ET 
       90.84        26.66        72.56         7.36       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F5 TCGA-BH-A1F8 TCGA-BH-A1FC 
       42.28        49.58        17.69        89.16        24.62       114.15 
TCGA-BH-A1FD TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A204 TCGA-BH-A208 
       33.17        55.00        45.63        72.07        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A42T TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-BH-A6R8 TCGA-C8-A12M 
      130.16        10.52        18.64        23.51         9.63        11.77 
TCGA-C8-A12U TCGA-C8-A12Y TCGA-C8-A132 TCGA-C8-A138 TCGA-C8-A1HI TCGA-C8-A1HK 
       12.66        48.53         1.87         4.08        11.28        12.03 
TCGA-C8-A1HL TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26Y TCGA-C8-A274 TCGA-C8-A27A 
       10.42        12.33        12.95        12.95         9.53        24.56 
TCGA-C8-A8HP TCGA-C8-A9FZ TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A143 TCGA-D8-A145 
       13.02        19.46        56.81        20.88        14.17        13.48 
TCGA-D8-A146 TCGA-D8-A1J8 TCGA-D8-A1JB TCGA-D8-A1JD TCGA-D8-A1JG TCGA-D8-A1JJ 
       21.14        14.17        55.50        18.15        53.00        20.09 
TCGA-D8-A1JL TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1X5 TCGA-D8-A1X9 TCGA-D8-A1XA 
       20.09        20.38        21.01        18.58        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XD TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       18.15        17.16        14.50        19.92        17.69        55.30 
TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       15.85        16.64        12.99        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27I TCGA-D8-A27L TCGA-D8-A27T TCGA-D8-A3Z5 TCGA-D8-A73X 
       14.14        14.43        16.41        13.08        33.37        25.22 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10C TCGA-E2-A10F 
       43.00        34.42        46.59        40.41        40.11        28.87 
TCGA-E2-A14O TCGA-E2-A14Q TCGA-E2-A14T TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Z 
       44.68        38.24        75.98        34.26        32.02        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A158 TCGA-E2-A159 TCGA-E2-A15C 
       63.62        69.96        23.24        14.79        25.05        22.82 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15M 
       20.71        21.63        18.21        12.92        55.63        11.05 
TCGA-E2-A15O TCGA-E2-A15P TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B1 TCGA-E2-A1B5 
       50.79        19.56        51.39        76.57        87.22        32.35 
TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IL 
       37.25        37.41        33.73        33.70        28.44         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L8 TCGA-E2-A1LE TCGA-E2-A1LI TCGA-E2-A1LK 
       22.19        60.99        73.64        28.90       102.61         8.75 
TCGA-E2-A2P5 TCGA-E2-A56Z TCGA-E2-A573 TCGA-E2-A574 TCGA-E2-A576 TCGA-E2-A9RU 
       26.99         8.28        34.92        38.76        34.29        17.69 
TCGA-E9-A1N3 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1ND 
       34.82        36.82        34.16        36.20        36.56        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1R2 
       35.77        35.24        25.84        18.94         9.86        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD 
        2.56         6.12        11.15        45.01        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A228 TCGA-E9-A229 
       46.65         6.58        21.27        47.64        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22H TCGA-E9-A244 TCGA-E9-A247 
       39.09        41.03        41.72        40.50         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A2JS TCGA-E9-A3HO TCGA-E9-A3X8 
        1.94         7.13        24.56        29.72        38.07        30.44 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A6HE TCGA-EW-A1IX 
       23.84        26.70         0.79        25.81        27.85        39.72 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J6 TCGA-EW-A1OW TCGA-EW-A1OY TCGA-EW-A1P3 
       18.90        13.25        28.77        22.82        29.85        52.96 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PC 
       29.82        23.11        18.48         7.86        18.90         6.15 
TCGA-EW-A1PH TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A3U0 TCGA-EW-A423 TCGA-EW-A6S9 
       19.96        52.73        25.91        17.49        10.16        15.22 
TCGA-EW-A6SA TCGA-EW-A6SB TCGA-EW-A6SC TCGA-EW-A6SD TCGA-GI-A2C8 TCGA-GM-A2DA 
       16.77        24.99        31.30        33.21         7.40       216.76 
TCGA-GM-A2DB TCGA-GM-A2DH TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A3NY TCGA-GM-A3XL 
       79.10        72.10        86.96       115.69        38.20        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-HN-A2NL TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LD-A66U 
       66.38        72.03         2.60        11.84        11.57        21.24 
TCGA-LD-A7W6 TCGA-LL-A442 TCGA-LL-A50Y TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LL-A6FP 
       13.28        29.23        25.05        14.70        14.47        22.26 
TCGA-LL-A6FQ TCGA-LL-A6FR TCGA-LL-A7SZ TCGA-LL-A7T0 TCGA-LQ-A4E4 TCGA-OL-A5D7 
        2.63        16.08        19.53        12.36        27.91        58.52 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RZ TCGA-OL-A66K TCGA-OL-A66L TCGA-OL-A6VO 
       34.92        36.36        22.32        41.92        42.77        28.21 
TCGA-OL-A6VQ TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE TCGA-PL-A8LX TCGA-PL-A8LZ 
       19.73        47.01        64.21        86.96         0.16         9.93 
TCGA-S3-A6ZF TCGA-S3-A6ZG TCGA-S3-A6ZH TCGA-S3-AA10 TCGA-UL-AAZ6 TCGA-V7-A7HQ 
       18.81        18.48        21.07        19.27        17.03        66.84 
TCGA-WT-AB44 TCGA-XX-A89A TCGA-Z7-A8R5 
       29.03        16.04       108.07 

$`DEL PEAK 40(22Q13.32) WILD-TYPE`
TCGA-3C-AALK TCGA-4H-AAAK TCGA-5L-AAT0 TCGA-5L-AAT1 TCGA-5T-A9QA TCGA-A1-A0SB 
       40.14        11.44        48.56        48.36         9.96         8.52 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SM TCGA-A1-A0SP 
       43.43        48.10        47.24        20.88         7.96        19.20 
TCGA-A1-A0SQ TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
       18.21        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CO TCGA-A2-A0CT TCGA-A2-A0CX TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
      114.81        75.25        56.81        34.55        33.76        61.58 
TCGA-A2-A0EM TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0EV 
      101.72       118.45        79.76        74.40        72.00        31.82 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SY 
       24.72        63.29        99.19        27.12        44.88        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T5 TCGA-A2-A0YC TCGA-A2-A0YI 
       17.52        17.13         8.38        17.46        32.55        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FX 
       18.61        19.33        48.46        31.73        23.47        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G4 TCGA-A2-A1G6 TCGA-A2-A259 
       22.45        20.25        19.20        19.56        16.47        52.47 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT 
       18.15       105.34        10.59        36.23        39.65        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A4RX TCGA-A2-A4S0 
       29.98        32.75        56.28        47.31        24.39        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CD TCGA-A7-A0D9 TCGA-A7-A0DA 
       26.96        21.14        21.90        38.30        37.45        35.67 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13F TCGA-A7-A13G TCGA-A7-A26F TCGA-A7-A26G 
       29.79        31.73        25.15        23.61        24.26        23.74 
TCGA-A7-A26H TCGA-A7-A2KD TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF 
       23.80        22.32        11.34        10.59        10.29        13.41 
TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SE TCGA-A7-A5ZW TCGA-A7-A5ZX TCGA-A7-A6VV 
       14.70        14.93        21.17        10.72        11.05        10.29 
TCGA-A7-A6VX TCGA-A8-A06O TCGA-A8-A079 TCGA-A8-A07G TCGA-A8-A07L TCGA-A8-A07O 
       10.42        13.02         9.01        18.97        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07S TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A086 
       10.98         8.98         7.99        24.99        45.07        13.02 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08F TCGA-A8-A08L TCGA-A8-A08P 
        0.99        38.01        28.96        33.01         9.99        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A091 TCGA-A8-A092 TCGA-A8-A093 
        0.99       112.08        43.00        33.01        30.97        17.95 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09I TCGA-A8-A09K 
       41.98        12.00         9.99         9.99        45.07        29.98 
TCGA-A8-A09Q TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0AD TCGA-AC-A23C 
       25.02        15.02        14.01        12.00        38.04         0.95 
TCGA-AC-A23E TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       22.95         5.72         1.48        73.05        99.35        40.57 
TCGA-AC-A2FE TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ 
       86.66        60.92        87.12        74.14        19.33        14.66 
TCGA-AC-A3EH TCGA-AC-A3OD TCGA-AC-A3QQ TCGA-AC-A3TN TCGA-AC-A3W5 TCGA-AC-A3W6 
        6.48        14.83        24.13        14.99        16.57        19.79 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A4ZE TCGA-AC-A5EI TCGA-AC-A62V TCGA-AC-A62X 
       23.24        24.79        29.26        14.53        11.44        13.71 
TCGA-AC-A6IW TCGA-AC-A7VC TCGA-AC-A8OQ TCGA-AC-A8OR TCGA-AC-A8OS TCGA-AN-A03X 
       13.58         0.03         1.12         1.32         2.30         0.33 
TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AM 
        0.33         0.33         2.96         1.78         1.71         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        0.33         0.33         7.96         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XP 
        7.04         0.33         0.33         5.36         0.33         0.30 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T 
        5.33         5.59        61.35        81.63        68.75        47.87 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       58.95        29.13        32.78        52.18        26.04        37.48 
TCGA-AO-A0JC TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JI TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        76.77        65.10        50.24        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12B 
       71.80        99.25       108.72       106.78       108.03        98.27 
TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KR 
       64.04        48.36        41.62        40.57        14.73        70.39 
TCGA-AO-A1KT TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A0Y5 TCGA-AQ-A1H2 
       17.79        24.79        26.93       130.09         5.65        15.62 
TCGA-AQ-A1H3 TCGA-AR-A0TQ TCGA-AR-A0TV TCGA-AR-A0TX TCGA-AR-A0U1 TCGA-AR-A0U2 
       32.52        98.33        75.22        64.83       133.22        83.87 
TCGA-AR-A0U4 TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
      107.21       108.36       103.86        97.68        96.00        86.07 
TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A24L TCGA-AR-A24M 
       37.81        94.29        86.53        86.43        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24Q TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A254 
       99.78       104.28       105.27        77.69       105.30        85.64 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LL TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        66.15        63.62        38.17 
TCGA-AR-A2LQ TCGA-AR-A2LR TCGA-AR-A5QM TCGA-AR-A5QN TCGA-AR-A5QQ TCGA-B6-A0I1 
       40.54        57.27        73.35        33.30        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      143.38       281.29        12.13       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
       65.72       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IP TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RM TCGA-B6-A0RQ TCGA-B6-A0RT 
      129.07       212.25       234.28        78.02       140.48        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WY 
      282.90       157.41        97.48       188.68        79.63       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.88 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A2IU TCGA-B6-A400 TCGA-B6-A401 
       43.59       101.52        73.51       170.17         7.07        85.35 
TCGA-B6-A402 TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AZ TCGA-BH-A0B2 
       70.16        62.93        59.84        20.45        63.09        40.83 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BG TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       32.02        18.21        61.51        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0DD 
       74.14        53.95        77.95        41.75        44.02        45.83 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DO TCGA-BH-A0DP 
       77.98        23.44        29.98        13.91        17.26        15.65 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 
        2.56        38.47        67.86        70.88        16.27        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EA TCGA-BH-A0EI TCGA-BH-A0H0 
       14.30        44.81        46.19        32.58        24.43        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HI TCGA-BH-A0HK 
       37.78        53.26        24.56        23.08        20.38         5.85 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0W4 
        2.50        13.61        51.32        27.25        50.79        24.95 
TCGA-BH-A18G TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
        4.90        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1EV TCGA-BH-A1EW 
       51.39        51.16        67.50        91.99        12.00        55.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1FB TCGA-BH-A1FE TCGA-BH-A1FG 
       25.81        31.53        97.48       120.62        74.73       122.89 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       36.92        63.35       144.59        72.07        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42U TCGA-BH-A42V 
       38.60        10.65         6.44        20.12       109.28        20.88 
TCGA-BH-A6R9 TCGA-BH-A8FY TCGA-BH-A8FZ TCGA-BH-A8G0 TCGA-BH-AB28 TCGA-C8-A12L 
        5.26         9.70        18.87        21.76         9.44        11.93 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 
       12.66        12.56         3.16        13.51        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HO 
        4.11        12.33        10.92        11.34         0.16        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 
       20.25        12.53        12.36         8.28         9.67         0.03 
TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-C8-A8HQ TCGA-C8-A8HR 
        9.50        14.43        33.99        12.95        12.49        13.41 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA 
       13.25        20.58        13.97        19.20        17.49        16.50 
TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK 
       15.78        18.90        12.03        14.01        18.97        20.12 
TCGA-D8-A1JM TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1X7 
       19.40        12.20        13.32        14.70        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XQ 
       25.74        12.39        15.22        14.73        21.80        16.41 
TCGA-D8-A1XS TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A27E 
       16.31        15.16        43.04        16.54        15.32        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27K TCGA-D8-A27M TCGA-D8-A27N 
       16.04        13.45        13.05        48.03        13.48         4.80 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z6 TCGA-D8-A4Z1 
        1.61        10.09        12.53        12.26        18.51        21.67 
TCGA-D8-A73U TCGA-D8-A73W TCGA-E2-A108 TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A14N 
       16.18        12.66        27.52        37.51        28.44        47.15 
TCGA-E2-A14P TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14X TCGA-E2-A14Y 
       40.96        38.60        33.17        43.33        31.96        69.34 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15D TCGA-E2-A15J 
       19.43        21.04        23.87        23.34        17.29        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A1B0 TCGA-E2-A1B4 
        9.04        20.58        56.94        14.07        53.62        33.01 
TCGA-E2-A1B6 TCGA-E2-A1BC TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1IK TCGA-E2-A1IU 
       28.50        16.47        77.65        70.36        59.18        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LG 
       54.18        60.36        19.66        24.59        75.81        50.07 
TCGA-E2-A1LH TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A570 TCGA-E9-A1N4 
      106.75        43.04        34.55        43.56        30.61        32.88 
TCGA-E9-A1N6 TCGA-E9-A1NC TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R5 TCGA-E9-A1R7 
       22.29        39.55        24.82        28.27         3.02        48.23 
TCGA-E9-A1RB TCGA-E9-A1RH TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A22B TCGA-E9-A22G 
       32.09        46.59        34.45        32.05        38.37        40.73 
TCGA-E9-A243 TCGA-E9-A295 TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X 
       20.12        12.33         9.47        32.91        30.18        23.90 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J3 TCGA-EW-A1J5 
       26.40        12.20         8.48        18.21        16.57        15.68 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P7 
       25.94        29.95        40.41        41.13        39.78        30.08 
TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PF TCGA-EW-A1PG TCGA-EW-A2FR 
       19.99        13.94        10.52        14.43        34.55        55.00 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A424 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DC 
       22.09        34.03        23.51       109.87        59.57        83.34 
TCGA-GM-A2DD TCGA-GM-A2DF TCGA-GM-A2DI TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A2DO 
       75.02        70.85        85.15       106.06       101.62        85.35 
TCGA-GM-A3NW TCGA-GM-A3XG TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-LD-A74U 
      110.50        43.73        13.55        18.12        62.47        13.22 
TCGA-LD-A7W5 TCGA-LD-A9QF TCGA-LL-A440 TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM 
        7.10        10.62        24.95        32.75        17.06        15.32 
TCGA-LL-A5YP TCGA-LL-A73Y TCGA-LL-A73Z TCGA-LL-A740 TCGA-LL-A8F5 TCGA-LL-A9Q3 
       14.79        15.68         7.46        14.50        19.59        17.49 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RU 
       22.39         2.10        36.30        31.99        58.62        40.08 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       28.87        24.72        20.38        26.70        23.47        65.62 
TCGA-OL-A66N TCGA-OL-A66O TCGA-OL-A66P TCGA-OL-A6VR TCGA-OL-A97C TCGA-PL-A8LY 
       26.04        17.36        14.07        40.11         8.91         0.26 
TCGA-S3-AA0Z TCGA-S3-AA11 TCGA-S3-AA12 TCGA-S3-AA14 TCGA-S3-AA15 TCGA-S3-AA17 
       20.68        13.84        18.87        17.39        17.26        13.94 
TCGA-UU-A93S TCGA-W8-A86G TCGA-WT-AB41 TCGA-XX-A899 TCGA-Z7-A8R6 
        3.81        11.41        52.96        15.35       107.05 

  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                           0.16                            0.03 
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                         263.28                          282.90 
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                          28.77                           26.93 
[1] "0.2 - 263.3 (28.8)" "0.0 - 282.9 (26.9)"
[1] "hr=" "1"  
D69V2, continuous
                                 vv
clus                              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEL PEAK 40(22Q13.32) MUTATED        38       37        1        2       157
  DEL PEAK 40(22Q13.32) WILD-TYPE      51       48        5        4       196
                                 vv
clus                              STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 40(22Q13.32) MUTATED         126         1         68         15
  DEL PEAK 40(22Q13.32) WILD-TYPE       126         1         86         14
                                 vv
clus                              STAGE IIIC STAGE IV STAGE TIS STAGE X
  DEL PEAK 40(22Q13.32) MUTATED           33        7         0       6
  DEL PEAK 40(22Q13.32) WILD-TYPE         32       13         1       7
D69V3, multiclass
            clus
vv           DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  STAGE I                               38                              51
  STAGE IA                              37                              48
  STAGE IB                               1                               5
  STAGE II                               2                               4
  STAGE IIA                            157                             196
  STAGE IIB                            126                             126
  STAGE III                              1                               1
  STAGE IIIA                            68                              86
  STAGE IIIB                            15                              14
  STAGE IIIC                            33                              32
  STAGE IV                               7                              13
  STAGE TIS                              0                               1
  STAGE X                                6                               7
[1] 13  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               T1  T2  T3  T4
  DEL PEAK 40(22Q13.32) MUTATED   116 300  54  20
  DEL PEAK 40(22Q13.32) WILD-TYPE 160 324  82  20
D69V4, multiclass
    clus
vv   DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  T1                           116                             160
  T2                           300                             324
  T3                            54                              82
  T4                            20                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                               N0  N1  N2  N3
  DEL PEAK 40(22Q13.32) MUTATED   230 165  54  39
  DEL PEAK 40(22Q13.32) WILD-TYPE 277 193  65  38
D69V5, multiclass
    clus
vv   DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  N0                           230                             277
  N1                           165                             193
  N2                            54                              65
  N3                            39                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V6, binary
                                 cls
clus                                0   1
  DEL PEAK 40(22Q13.32) MUTATED   409   8
  DEL PEAK 40(22Q13.32) WILD-TYPE 480  14
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(22Q13.32) MUTATED    409    8
  DEL PEAK 40(22Q13.32) WILD-TYPE  480   14
   clus
vv  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  0                           409                             480
  1                             8                              14
[1] 2 2
[1] FALSE
D69V7, binary
                                 cls
clus                                0   1
  DEL PEAK 40(22Q13.32) MUTATED   485   7
  DEL PEAK 40(22Q13.32) WILD-TYPE 583   5
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(22Q13.32) MUTATED    485    7
  DEL PEAK 40(22Q13.32) WILD-TYPE  583    5
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  FEMALE                           485                             583
  MALE                               7                               5
[1] 2 2
[1] FALSE
D69V8, binary
                                 cls
clus                                0   1
  DEL PEAK 40(22Q13.32) MUTATED   183 257
  DEL PEAK 40(22Q13.32) WILD-TYPE 246 261
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(22Q13.32) MUTATED    183  257
  DEL PEAK 40(22Q13.32) WILD-TYPE  246  261
     clus
vv    DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  NO                            183                             246
  YES                           257                             261
[1] 2 2
[1] FALSE
                                 vv
clus                              INFILTRATING CARCINOMA NOS
  DEL PEAK 40(22Q13.32) MUTATED                            1
  DEL PEAK 40(22Q13.32) WILD-TYPE                          0
                                 vv
clus                              INFILTRATING DUCTAL CARCINOMA
  DEL PEAK 40(22Q13.32) MUTATED                             361
  DEL PEAK 40(22Q13.32) WILD-TYPE                           409
                                 vv
clus                              INFILTRATING LOBULAR CARCINOMA
  DEL PEAK 40(22Q13.32) MUTATED                               90
  DEL PEAK 40(22Q13.32) WILD-TYPE                            110
                                 vv
clus                              MEDULLARY CARCINOMA METAPLASTIC CARCINOMA
  DEL PEAK 40(22Q13.32) MUTATED                     3                     3
  DEL PEAK 40(22Q13.32) WILD-TYPE                   3                     6
                                 vv
clus                              MIXED HISTOLOGY (PLEASE SPECIFY)
  DEL PEAK 40(22Q13.32) MUTATED                                 19
  DEL PEAK 40(22Q13.32) WILD-TYPE                               10
                                 vv
clus                              MUCINOUS CARCINOMA OTHER  SPECIFY
  DEL PEAK 40(22Q13.32) MUTATED                    1             13
  DEL PEAK 40(22Q13.32) WILD-TYPE                 16             34
D69V9, multiclass
                                  clus
vv                                 DEL PEAK 40(22Q13.32) MUTATED
  INFILTRATING CARCINOMA NOS                                   1
  INFILTRATING DUCTAL CARCINOMA                              361
  INFILTRATING LOBULAR CARCINOMA                              90
  MEDULLARY CARCINOMA                                          3
  METAPLASTIC CARCINOMA                                        3
  MIXED HISTOLOGY (PLEASE SPECIFY)                            19
  MUCINOUS CARCINOMA                                           1
  OTHER  SPECIFY                                              13
                                  clus
vv                                 DEL PEAK 40(22Q13.32) WILD-TYPE
  INFILTRATING CARCINOMA NOS                                     0
  INFILTRATING DUCTAL CARCINOMA                                409
  INFILTRATING LOBULAR CARCINOMA                               110
  MEDULLARY CARCINOMA                                            3
  METAPLASTIC CARCINOMA                                          6
  MIXED HISTOLOGY (PLEASE SPECIFY)                              10
  MUCINOUS CARCINOMA                                            16
  OTHER  SPECIFY                                                34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V10, continuous
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 40(22Q13.32) MUTATED                                  0    23
  DEL PEAK 40(22Q13.32) WILD-TYPE                                1    37
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 40(22Q13.32) MUTATED                          88   339
  DEL PEAK 40(22Q13.32) WILD-TYPE                        93   406
D69V11, multiclass
                                  clus
vv                                 DEL PEAK 40(22Q13.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       23
  BLACK OR AFRICAN AMERICAN                                   88
  WHITE                                                      339
                                  clus
vv                                 DEL PEAK 40(22Q13.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         37
  BLACK OR AFRICAN AMERICAN                                     93
  WHITE                                                        406
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V12, binary
                                 cls
clus                                0   1
  DEL PEAK 40(22Q13.32) MUTATED    16 397
  DEL PEAK 40(22Q13.32) WILD-TYPE  23 478
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(22Q13.32) MUTATED     16  397
  DEL PEAK 40(22Q13.32) WILD-TYPE   23  478
                        clus
vv                       DEL PEAK 40(22Q13.32) MUTATED
  HISPANIC OR LATINO                                16
  NOT HISPANIC OR LATINO                           397
                        clus
vv                       DEL PEAK 40(22Q13.32) WILD-TYPE
  HISPANIC OR LATINO                                  23
  NOT HISPANIC OR LATINO                             478
[1] 2 2
[1] FALSE
