[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  APOBEC"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                          Clinical feature           
DAYS_TO_DEATH_OR_LAST_FUP "DAYS_TO_DEATH_OR_LAST_FUP"
YEARS_TO_BIRTH            "YEARS_TO_BIRTH"           
PATHOLOGIC_STAGE          "PATHOLOGIC_STAGE"         
PATHOLOGY_T_STAGE         "PATHOLOGY_T_STAGE"        
PATHOLOGY_N_STAGE         "PATHOLOGY_N_STAGE"        
PATHOLOGY_M_STAGE         "PATHOLOGY_M_STAGE"        
GENDER                    "GENDER"                   
RADIATION_THERAPY         "RADIATION_THERAPY"        
HISTOLOGICAL_TYPE         "HISTOLOGICAL_TYPE"        
NUMBER_OF_LYMPH_NODES     "NUMBER_OF_LYMPH_NODES"    
RACE                      "RACE"                     
ETHNICITY                 "ETHNICITY"                
                          Statistical test            Significant variables
DAYS_TO_DEATH_OR_LAST_FUP "Cox regression test"       "N=2"                
YEARS_TO_BIRTH            "Spearman correlation test" "N=1"                
PATHOLOGIC_STAGE          "Kruskal-Wallis test"       "N=0"                
PATHOLOGY_T_STAGE         "Spearman correlation test" "N=1"                
PATHOLOGY_N_STAGE         "Spearman correlation test" "N=0"                
PATHOLOGY_M_STAGE         "Wilcoxon test"             "N=0"                
GENDER                    "Wilcoxon test"             "N=0"                
RADIATION_THERAPY         "Wilcoxon test"             "N=0"                
HISTOLOGICAL_TYPE         "Kruskal-Wallis test"       "N=3"                
NUMBER_OF_LYMPH_NODES     "Spearman correlation test" "N=0"                
RACE                      "Kruskal-Wallis test"       "N=2"                
ETHNICITY                 "Wilcoxon test"             "N=0"                
                          Associated with   
DAYS_TO_DEATH_OR_LAST_FUP "shorter survival"
YEARS_TO_BIRTH            "older"           
PATHOLOGIC_STAGE          " "               
PATHOLOGY_T_STAGE         "higher stage"    
PATHOLOGY_N_STAGE         " "               
PATHOLOGY_M_STAGE         " "               
GENDER                    " "               
RADIATION_THERAPY         " "               
HISTOLOGICAL_TYPE         " "               
NUMBER_OF_LYMPH_NODES     " "               
RACE                      " "               
ETHNICITY                 " "               
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP "N=2"                                                                                     
YEARS_TO_BIRTH            "N=1"                                                                                     
PATHOLOGIC_STAGE          " "                                                                                       
PATHOLOGY_T_STAGE         "N=1"                                                                                     
PATHOLOGY_N_STAGE         " "                                                                                       
PATHOLOGY_M_STAGE         " "                                                                                       
GENDER                    " "                                                                                       
RADIATION_THERAPY         " "                                                                                       
HISTOLOGICAL_TYPE         " "                                                                                       
NUMBER_OF_LYMPH_NODES     " "                                                                                       
RACE                      " "                                                                                       
ETHNICITY                 " "                                                                                       
                          Associated with        
DAYS_TO_DEATH_OR_LAST_FUP "longer survival" "N=0"
YEARS_TO_BIRTH            "younger"         "N=0"
PATHOLOGIC_STAGE          " "               " "  
PATHOLOGY_T_STAGE         "lower stage"     "N=0"
PATHOLOGY_N_STAGE         " "               " "  
PATHOLOGY_M_STAGE         " "               " "  
GENDER                    " "               " "  
RADIATION_THERAPY         " "               " "  
HISTOLOGICAL_TYPE         " "               " "  
NUMBER_OF_LYMPH_NODES     " "               " "  
RACE                      " "               " "  
ETHNICITY                 " "               " "  
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 1
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
