[1] "ofn"        "-oTCOAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/COAD-TP/20125559/COAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/COAD-TP/19780705/transformed.cor.cli.txt"

nPatients in clinical file=459, in cluster file=450, common to both=450
[1]  69 450
[1] "AMP PEAK  1(2Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE 
                           92                           358 
  AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE 
                           92                           358 
[1] "AMP PEAK  2(5P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE 
                           88                           362 
  AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE 
                           88                           362 
[1] "AMP PEAK  3(5Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                           46                           404 
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                           46                           404 
[1] "AMP PEAK  4(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           96                           354 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           96                           354 
[1] "AMP PEAK  5(7P21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE 
                          255                           195 
  AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE 
                          255                           195 
[1] "AMP PEAK  6(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE 
                           158                            292 
  AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE 
                           158                            292 
[1] "AMP PEAK  7(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE 
                           188                            262 
  AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE 
                           188                            262 
[1] "AMP PEAK  8(8Q12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE 
                          236                           214 
  AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE 
                          236                           214 
[1] "AMP PEAK  9(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                           260                            190 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                           260                            190 
[1] "AMP PEAK 10(11P15.5) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE 
                            94                            356 
  AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE 
                            94                            356 
[1] "AMP PEAK 11(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                            111                             339 
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                            111                             339 
[1] "AMP PEAK 12(13Q12.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE 
                            275                             175 
  AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE 
                            275                             175 
[1] "AMP PEAK 13(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE 
                           277                            173 
  AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE 
                           277                            173 
[1] "AMP PEAK 14(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE 
                           126                            324 
  AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE 
                           126                            324 
[1] "AMP PEAK 15(16Q12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE 
                           111                            339 
  AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE 
                           111                            339 
[1] "AMP PEAK 16(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE 
                            44                            406 
  AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE 
                            44                            406 
[1] "AMP PEAK 17(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                         114                          336 
  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                         114                          336 
[1] "AMP PEAK 18(17Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE 
                           106                            344 
  AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE 
                           106                            344 
[1] "AMP PEAK 19(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE 
                            75                            375 
  AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE 
                            75                            375 
[1] "AMP PEAK 20(19Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE 
                             95                             355 
  AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE 
                             95                             355 
[1] "AMP PEAK 21(20P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE 
                           208                            242 
  AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE 
                           208                            242 
[1] "AMP PEAK 22(20P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE 
                            252                             198 
  AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE 
                            252                             198 
[1] "AMP PEAK 23(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                            323                             127 
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                            323                             127 
[1] "AMP PEAK 24(20Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE 
                         324                          126 
  AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE 
                         324                          126 
[1] "AMP PEAK 25(20Q13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE 
                            326                             124 
  AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE 
                            326                             124 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           168                            282 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           168                            282 
[1] "DEL PEAK  2(1P33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        123                         327 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        123                         327 
[1] "DEL PEAK  3(1P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE 
                          119                           331 
  DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE 
                          119                           331 
[1] "DEL PEAK  4(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE 
                         54                         396 
  DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE 
                         54                         396 
[1] "DEL PEAK  5(2P21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE 
                         17                         433 
  DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE 
                         17                         433 
[1] "DEL PEAK  6(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE 
                           24                           426 
  DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE 
                           24                           426 
[1] "DEL PEAK  7(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE 
                           72                           378 
  DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE 
                           72                           378 
[1] "DEL PEAK  8(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                           88                           362 
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                           88                           362 
[1] "DEL PEAK  9(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            46                            404 
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            46                            404 
[1] "DEL PEAK 10(4P16.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE 
                          139                           311 
  DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE 
                          139                           311 
[1] "DEL PEAK 11(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                          151                           299 
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                          151                           299 
[1] "DEL PEAK 12(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                          159                           291 
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                          159                           291 
[1] "DEL PEAK 13(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE 
                          106                           344 
  DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE 
                          106                           344 
[1] "DEL PEAK 14(5Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE 
                          127                           323 
  DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE 
                          127                           323 
[1] "DEL PEAK 15(5Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE 
                          130                           320 
  DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE 
                          130                           320 
[1] "DEL PEAK 16(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                           56                           394 
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                           56                           394 
[1] "DEL PEAK 17(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                         62                         388 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                         62                         388 
[1] "DEL PEAK 18(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE 
                           13                           437 
  DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE 
                           13                           437 
[1] "DEL PEAK 19(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE 
                          189                           261 
  DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE 
                          189                           261 
[1] "DEL PEAK 20(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE 
                        203                         247 
  DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE 
                        203                         247 
[1] "DEL PEAK 21(8Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE 
                           30                           420 
  DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE 
                           30                           420 
[1] "DEL PEAK 22(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE 
                           62                           388 
  DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE 
                           62                           388 
[1] "DEL PEAK 23(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE 
                            80                            370 
  DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE 
                            80                            370 
[1] "DEL PEAK 24(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE 
                            98                            352 
  DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE 
                            98                            352 
[1] "DEL PEAK 25(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                            109                             341 
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                            109                             341 
[1] "DEL PEAK 26(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE 
                           109                            341 
  DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE 
                           109                            341 
[1] "DEL PEAK 27(12P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE 
                            60                            390 
  DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE 
                            60                            390 
[1] "DEL PEAK 28(13Q14.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE 
                             19                             431 
  DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE 
                             19                             431 
[1] "DEL PEAK 29(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE 
                           150                            300 
  DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE 
                           150                            300 
[1] "DEL PEAK 30(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE 
                           177                            273 
  DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE 
                           177                            273 
[1] "DEL PEAK 31(15Q15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE 
                           172                            278 
  DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE 
                           172                            278 
[1] "DEL PEAK 32(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE 
                           169                            281 
  DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE 
                           169                            281 
[1] "DEL PEAK 33(15Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE 
                            161                             289 
  DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE 
                            161                             289 
[1] "DEL PEAK 34(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            56                            394 
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            56                            394 
[1] "DEL PEAK 35(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE 
                            61                            389 
  DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE 
                            61                            389 
[1] "DEL PEAK 36(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE 
                         254                          196 
  DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE 
                         254                          196 
[1] "DEL PEAK 37(17Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE 
                            69                            381 
  DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE 
                            69                            381 
[1] "DEL PEAK 38(18P11.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE 
                            246                             204 
  DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE 
                            246                             204 
[1] "DEL PEAK 39(18Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE 
                           274                            176 
  DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE 
                           274                            176 
[1] "DEL PEAK 40(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE 
                           287                            163 
  DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE 
                           287                            163 
[1] "DEL PEAK 41(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE 
                            63                            387 
  DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE 
                            63                            387 
[1] "DEL PEAK 42(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE 
                            86                            364 
  DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE 
                            86                            364 
[1] "DEL PEAK 43(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE 
                           141                            309 
  DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE 
                           141                            309 
[1] "DEL PEAK 44(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            160                             290 
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            160                             290 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 450 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 450 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(2Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q33.1) MUTATED        4     14      2      5
  AMP PEAK  1(2Q33.1) WILD-TYPE     31     47     27     16
D1V1, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                           4                            31
  CLUS_2                          14                            47
  CLUS_3                           2                            27
  CLUS_4                           5                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED        4     12      9
  AMP PEAK  1(2Q33.1) WILD-TYPE     38     60     23
D1V2, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                           4                            38
  CLUS_2                          12                            60
  CLUS_3                           9                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED       27     50     15
  AMP PEAK  1(2Q33.1) WILD-TYPE    175    120     63
D1V3, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          27                           175
  CLUS_2                          50                           120
  CLUS_3                          15                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED       38     15     13
  AMP PEAK  1(2Q33.1) WILD-TYPE     82     82     63
D1V4, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          38                            82
  CLUS_2                          15                            82
  CLUS_3                          13                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED       23     28     22
  AMP PEAK  1(2Q33.1) WILD-TYPE     62    116    103
D1V5, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          23                            62
  CLUS_2                          28                           116
  CLUS_3                          22                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(2Q33.1) MUTATED       15      5      5      8      9     17
  AMP PEAK  1(2Q33.1) WILD-TYPE     36     28     30     31     33     69
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  1(2Q33.1) MUTATED        2      3      9
  AMP PEAK  1(2Q33.1) WILD-TYPE     20     17     17
D1V6, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          15                            36
  CLUS_2                           5                            28
  CLUS_3                           5                            30
  CLUS_4                           8                            31
  CLUS_5                           9                            33
  CLUS_6                          17                            69
  CLUS_7                           2                            20
  CLUS_8                           3                            17
  CLUS_9                           9                            17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q33.1) MUTATED       41     12     19     20
  AMP PEAK  1(2Q33.1) WILD-TYPE     80     95     71    110
D1V7, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          41                            80
  CLUS_2                          12                            95
  CLUS_3                          19                            71
  CLUS_4                          20                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(2Q33.1) MUTATED       19     33     12     26      2
  AMP PEAK  1(2Q33.1) WILD-TYPE     60     75     84    103     34
D1V8, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          19                            60
  CLUS_2                          33                            75
  CLUS_3                          12                            84
  CLUS_4                          26                           103
  CLUS_5                           2                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED       37     13     28
  AMP PEAK  1(2Q33.1) WILD-TYPE    123     52    144
D1V9, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          37                           123
  CLUS_2                          13                            52
  CLUS_3                          28                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q33.1) MUTATED       25     11     22     20
  AMP PEAK  1(2Q33.1) WILD-TYPE    110     39     55    115
D1V10, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          25                           110
  CLUS_2                          11                            39
  CLUS_3                          22                            55
  CLUS_4                          20                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED        7      9      6
  AMP PEAK  1(2Q33.1) WILD-TYPE     22     23     18
D1V11, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                           7                            22
  CLUS_2                           9                            23
  CLUS_3                           6                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(2Q33.1) MUTATED        2      6      5      8      1
  AMP PEAK  1(2Q33.1) WILD-TYPE     10     16     12     16      9
D1V12, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                           2                            10
  CLUS_2                           6                            16
  CLUS_3                           5                            12
  CLUS_4                           8                            16
  CLUS_5                           1                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(5P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(5P13.2) MUTATED        8     16      3      5
  AMP PEAK  2(5P13.2) WILD-TYPE     27     45     26     16
D2V1, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                           8                            27
  CLUS_2                          16                            45
  CLUS_3                           3                            26
  CLUS_4                           5                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED        8     13     11
  AMP PEAK  2(5P13.2) WILD-TYPE     34     59     21
D2V2, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          13                            59
  CLUS_3                          11                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED       23     48     17
  AMP PEAK  2(5P13.2) WILD-TYPE    179    122     61
D2V3, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          23                           179
  CLUS_2                          48                           122
  CLUS_3                          17                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED       21     20     14
  AMP PEAK  2(5P13.2) WILD-TYPE     99     77     62
D2V4, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          21                            99
  CLUS_2                          20                            77
  CLUS_3                          14                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED       26     22     19
  AMP PEAK  2(5P13.2) WILD-TYPE     59    122    106
D2V5, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          26                            59
  CLUS_2                          22                           122
  CLUS_3                          19                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(5P13.2) MUTATED       13      5      6      9      7     13
  AMP PEAK  2(5P13.2) WILD-TYPE     38     28     29     30     35     73
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  2(5P13.2) MUTATED        4      3      7
  AMP PEAK  2(5P13.2) WILD-TYPE     18     17     19
D2V6, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          13                            38
  CLUS_2                           5                            28
  CLUS_3                           6                            29
  CLUS_4                           9                            30
  CLUS_5                           7                            35
  CLUS_6                          13                            73
  CLUS_7                           4                            18
  CLUS_8                           3                            17
  CLUS_9                           7                            19
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(5P13.2) MUTATED       29     10     19     30
  AMP PEAK  2(5P13.2) WILD-TYPE     92     97     71    100
D2V7, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          29                            92
  CLUS_2                          10                            97
  CLUS_3                          19                            71
  CLUS_4                          30                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(5P13.2) MUTATED       25     16     10     32      5
  AMP PEAK  2(5P13.2) WILD-TYPE     54     92     86     97     31
D2V8, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          25                            54
  CLUS_2                          16                            92
  CLUS_3                          10                            86
  CLUS_4                          32                            97
  CLUS_5                           5                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED       28     14     35
  AMP PEAK  2(5P13.2) WILD-TYPE    132     51    137
D2V9, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          28                           132
  CLUS_2                          14                            51
  CLUS_3                          35                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(5P13.2) MUTATED       23      9     14     31
  AMP PEAK  2(5P13.2) WILD-TYPE    112     41     63    104
D2V10, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          23                           112
  CLUS_2                           9                            41
  CLUS_3                          14                            63
  CLUS_4                          31                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED        6      8      4
  AMP PEAK  2(5P13.2) WILD-TYPE     23     24     20
D2V11, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                           6                            23
  CLUS_2                           8                            24
  CLUS_3                           4                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(5P13.2) MUTATED        4      6      3      3      2
  AMP PEAK  2(5P13.2) WILD-TYPE      8     16     14     21      8
D2V12, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                           4                             8
  CLUS_2                           6                            16
  CLUS_3                           3                            14
  CLUS_4                           3                            21
  CLUS_5                           2                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(5Q22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5Q22.3) MUTATED        2      6      2      2
  AMP PEAK  3(5Q22.3) WILD-TYPE     33     55     27     19
D3V1, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           2                            33
  CLUS_2                           6                            55
  CLUS_3                           2                            27
  CLUS_4                           2                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED        3      6      3
  AMP PEAK  3(5Q22.3) WILD-TYPE     39     66     29
D3V2, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           3                            39
  CLUS_2                           6                            66
  CLUS_3                           3                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED       12     27      7
  AMP PEAK  3(5Q22.3) WILD-TYPE    190    143     71
D3V3, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                          12                           190
  CLUS_2                          27                           143
  CLUS_3                           7                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED       16     12      5
  AMP PEAK  3(5Q22.3) WILD-TYPE    104     85     71
D3V4, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                          16                           104
  CLUS_2                          12                            85
  CLUS_3                           5                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED        5     17     13
  AMP PEAK  3(5Q22.3) WILD-TYPE     80    127    112
D3V5, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           5                            80
  CLUS_2                          17                           127
  CLUS_3                          13                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(5Q22.3) MUTATED        4      1      4      7      2     11
  AMP PEAK  3(5Q22.3) WILD-TYPE     47     32     31     32     40     75
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  3(5Q22.3) MUTATED        2      3      1
  AMP PEAK  3(5Q22.3) WILD-TYPE     20     17     25
D3V6, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           4                            47
  CLUS_2                           1                            32
  CLUS_3                           4                            31
  CLUS_4                           7                            32
  CLUS_5                           2                            40
  CLUS_6                          11                            75
  CLUS_7                           2                            20
  CLUS_8                           3                            17
  CLUS_9                           1                            25
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5Q22.3) MUTATED       17      6      8     15
  AMP PEAK  3(5Q22.3) WILD-TYPE    104    101     82    115
D3V7, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                          17                           104
  CLUS_2                           6                           101
  CLUS_3                           8                            82
  CLUS_4                          15                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(5Q22.3) MUTATED       13     13      3     14      3
  AMP PEAK  3(5Q22.3) WILD-TYPE     66     95     93    115     33
D3V8, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                          13                            66
  CLUS_2                          13                            95
  CLUS_3                           3                            93
  CLUS_4                          14                           115
  CLUS_5                           3                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED       16      7     17
  AMP PEAK  3(5Q22.3) WILD-TYPE    144     58    155
D3V9, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                          16                           144
  CLUS_2                           7                            58
  CLUS_3                          17                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5Q22.3) MUTATED       13      4      6     17
  AMP PEAK  3(5Q22.3) WILD-TYPE    122     46     71    118
D3V10, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                          13                           122
  CLUS_2                           4                            46
  CLUS_3                           6                            71
  CLUS_4                          17                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED        2      5      5
  AMP PEAK  3(5Q22.3) WILD-TYPE     27     27     19
D3V11, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           2                            27
  CLUS_2                           5                            27
  CLUS_3                           5                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(5Q22.3) MUTATED        1      4      4      1      2
  AMP PEAK  3(5Q22.3) WILD-TYPE     11     18     13     23      8
D3V12, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           1                            11
  CLUS_2                           4                            18
  CLUS_3                           4                            13
  CLUS_4                           1                            23
  CLUS_5                           2                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED        5     16      3      5
  AMP PEAK  4(6P21.1) WILD-TYPE     30     45     26     16
D4V1, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           5                            30
  CLUS_2                          16                            45
  CLUS_3                           3                            26
  CLUS_4                           5                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED        3     10     16
  AMP PEAK  4(6P21.1) WILD-TYPE     39     62     16
D4V2, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           3                            39
  CLUS_2                          10                            62
  CLUS_3                          16                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       17     62     17
  AMP PEAK  4(6P21.1) WILD-TYPE    185    108     61
D4V3, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          17                           185
  CLUS_2                          62                           108
  CLUS_3                          17                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       38     16     12
  AMP PEAK  4(6P21.1) WILD-TYPE     82     81     64
D4V4, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          38                            82
  CLUS_2                          16                            81
  CLUS_3                          12                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       23     31     24
  AMP PEAK  4(6P21.1) WILD-TYPE     62    113    101
D4V5, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          23                            62
  CLUS_2                          31                           113
  CLUS_3                          24                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(6P21.1) MUTATED       15      4     13     11      8     15
  AMP PEAK  4(6P21.1) WILD-TYPE     36     29     22     28     34     71
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  4(6P21.1) MUTATED        4      3      5
  AMP PEAK  4(6P21.1) WILD-TYPE     18     17     21
D4V6, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          15                            36
  CLUS_2                           4                            29
  CLUS_3                          13                            22
  CLUS_4                          11                            28
  CLUS_5                           8                            34
  CLUS_6                          15                            71
  CLUS_7                           4                            18
  CLUS_8                           3                            17
  CLUS_9                           5                            21
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED       30     12     24     30
  AMP PEAK  4(6P21.1) WILD-TYPE     91     95     66    100
D4V7, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          30                            91
  CLUS_2                          12                            95
  CLUS_3                          24                            66
  CLUS_4                          30                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(6P21.1) MUTATED       26     25      9     34      2
  AMP PEAK  4(6P21.1) WILD-TYPE     53     83     87     95     34
D4V8, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          26                            53
  CLUS_2                          25                            83
  CLUS_3                           9                            87
  CLUS_4                          34                            95
  CLUS_5                           2                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       37     15     34
  AMP PEAK  4(6P21.1) WILD-TYPE    123     50    138
D4V9, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          37                           123
  CLUS_2                          15                            50
  CLUS_3                          34                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED       30     13     17     26
  AMP PEAK  4(6P21.1) WILD-TYPE    105     37     60    109
D4V10, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          30                           105
  CLUS_2                          13                            37
  CLUS_3                          17                            60
  CLUS_4                          26                           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED        4      9      7
  AMP PEAK  4(6P21.1) WILD-TYPE     25     23     17
D4V11, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           4                            25
  CLUS_2                           9                            23
  CLUS_3                           7                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(6P21.1) MUTATED        5      6      4      3      2
  AMP PEAK  4(6P21.1) WILD-TYPE      7     16     13     21      8
D4V12, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                           6                            16
  CLUS_3                           4                            13
  CLUS_4                           3                            21
  CLUS_5                           2                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(7P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P21.2) MUTATED       11     39     11      9
  AMP PEAK  5(7P21.2) WILD-TYPE     24     22     18     12
D5V1, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          11                            24
  CLUS_2                          39                            22
  CLUS_3                          11                            18
  CLUS_4                           9                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P21.2) MUTATED       10     34     26
  AMP PEAK  5(7P21.2) WILD-TYPE     32     38      6
D5V2, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          10                            32
  CLUS_2                          34                            38
  CLUS_3                          26                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P21.2) MUTATED       70    129     56
  AMP PEAK  5(7P21.2) WILD-TYPE    132     41     22
D5V3, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          70                           132
  CLUS_2                         129                            41
  CLUS_3                          56                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P21.2) MUTATED       94     46     38
  AMP PEAK  5(7P21.2) WILD-TYPE     26     51     38
D5V4, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          94                            26
  CLUS_2                          46                            51
  CLUS_3                          38                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P21.2) MUTATED       54     80     60
  AMP PEAK  5(7P21.2) WILD-TYPE     31     64     65
D5V5, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          54                            31
  CLUS_2                          80                            64
  CLUS_3                          60                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(7P21.2) MUTATED       38     11     24     17     27     38
  AMP PEAK  5(7P21.2) WILD-TYPE     13     22     11     22     15     48
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  5(7P21.2) MUTATED       10     11     18
  AMP PEAK  5(7P21.2) WILD-TYPE     12      9      8
D5V6, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          38                            13
  CLUS_2                          11                            22
  CLUS_3                          24                            11
  CLUS_4                          17                            22
  CLUS_5                          27                            15
  CLUS_6                          38                            48
  CLUS_7                          10                            12
  CLUS_8                          11                             9
  CLUS_9                          18                             8
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P21.2) MUTATED       89     46     51     68
  AMP PEAK  5(7P21.2) WILD-TYPE     32     61     39     62
D5V7, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          89                            32
  CLUS_2                          46                            61
  CLUS_3                          51                            39
  CLUS_4                          68                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(7P21.2) MUTATED       60     75     34     76      9
  AMP PEAK  5(7P21.2) WILD-TYPE     19     33     62     53     27
D5V8, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          60                            19
  CLUS_2                          75                            33
  CLUS_3                          34                            62
  CLUS_4                          76                            53
  CLUS_5                           9                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P21.2) MUTATED       97     35     96
  AMP PEAK  5(7P21.2) WILD-TYPE     63     30     76
D5V9, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          97                            63
  CLUS_2                          35                            30
  CLUS_3                          96                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P21.2) MUTATED       78     30     49     71
  AMP PEAK  5(7P21.2) WILD-TYPE     57     20     28     64
D5V10, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          78                            57
  CLUS_2                          30                            20
  CLUS_3                          49                            28
  CLUS_4                          71                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P21.2) MUTATED       20     20     17
  AMP PEAK  5(7P21.2) WILD-TYPE      9     12      7
D5V11, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          20                             9
  CLUS_2                          20                            12
  CLUS_3                          17                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(7P21.2) MUTATED       12     15     11     12      7
  AMP PEAK  5(7P21.2) WILD-TYPE      0      7      6     12      3
D5V12, multiclass
        clus
vv       AMP PEAK  5(7P21.2) MUTATED AMP PEAK  5(7P21.2) WILD-TYPE
  CLUS_1                          12                             0
  CLUS_2                          15                             7
  CLUS_3                          11                             6
  CLUS_4                          12                            12
  CLUS_5                           7                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED        7     23      8      5
  AMP PEAK  6(8P11.23) WILD-TYPE     28     38     21     16
D6V1, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                            7                             28
  CLUS_2                           23                             38
  CLUS_3                            8                             21
  CLUS_4                            5                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED        9     20     14
  AMP PEAK  6(8P11.23) WILD-TYPE     33     52     18
D6V2, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                           20                             52
  CLUS_3                           14                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       44     56     58
  AMP PEAK  6(8P11.23) WILD-TYPE    158    114     20
D6V3, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           44                            158
  CLUS_2                           56                            114
  CLUS_3                           58                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       55     33     24
  AMP PEAK  6(8P11.23) WILD-TYPE     65     64     52
D6V4, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           55                             65
  CLUS_2                           33                             64
  CLUS_3                           24                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       32     50     35
  AMP PEAK  6(8P11.23) WILD-TYPE     53     94     90
D6V5, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           32                             53
  CLUS_2                           50                             94
  CLUS_3                           35                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8P11.23) MUTATED       22      9      8     15     14     25
  AMP PEAK  6(8P11.23) WILD-TYPE     29     24     27     24     28     61
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  6(8P11.23) MUTATED        5      6     13
  AMP PEAK  6(8P11.23) WILD-TYPE     17     14     13
D6V6, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           22                             29
  CLUS_2                            9                             24
  CLUS_3                            8                             27
  CLUS_4                           15                             24
  CLUS_5                           14                             28
  CLUS_6                           25                             61
  CLUS_7                            5                             17
  CLUS_8                            6                             14
  CLUS_9                           13                             13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED       51     36     33     36
  AMP PEAK  6(8P11.23) WILD-TYPE     70     71     57     94
D6V7, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           51                             70
  CLUS_2                           36                             71
  CLUS_3                           33                             57
  CLUS_4                           36                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8P11.23) MUTATED       33     45     31     41      6
  AMP PEAK  6(8P11.23) WILD-TYPE     46     63     65     88     30
D6V8, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           33                             46
  CLUS_2                           45                             63
  CLUS_3                           31                             65
  CLUS_4                           41                             88
  CLUS_5                            6                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       63     20     57
  AMP PEAK  6(8P11.23) WILD-TYPE     97     45    115
D6V9, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           63                             97
  CLUS_2                           20                             45
  CLUS_3                           57                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED       53     20     28     39
  AMP PEAK  6(8P11.23) WILD-TYPE     82     30     49     96
D6V10, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           53                             82
  CLUS_2                           20                             30
  CLUS_3                           28                             49
  CLUS_4                           39                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       11     12      6
  AMP PEAK  6(8P11.23) WILD-TYPE     18     20     18
D6V11, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                           12                             20
  CLUS_3                            6                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8P11.23) MUTATED        7      8      3      6      5
  AMP PEAK  6(8P11.23) WILD-TYPE      5     14     14     18      5
D6V12, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                            8                             14
  CLUS_3                            3                             14
  CLUS_4                            6                             18
  CLUS_5                            5                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED        9     25     11      9
  AMP PEAK  7(8P11.21) WILD-TYPE     26     36     18     12
D7V1, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                            9                             26
  CLUS_2                           25                             36
  CLUS_3                           11                             18
  CLUS_4                            9                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       10     26     18
  AMP PEAK  7(8P11.21) WILD-TYPE     32     46     14
D7V2, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                           26                             46
  CLUS_3                           18                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       50     72     66
  AMP PEAK  7(8P11.21) WILD-TYPE    152     98     12
D7V3, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           50                            152
  CLUS_2                           72                             98
  CLUS_3                           66                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       61     35     35
  AMP PEAK  7(8P11.21) WILD-TYPE     59     62     41
D7V4, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           61                             59
  CLUS_2                           35                             62
  CLUS_3                           35                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       37     56     45
  AMP PEAK  7(8P11.21) WILD-TYPE     48     88     80
D7V5, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           37                             48
  CLUS_2                           56                             88
  CLUS_3                           45                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8P11.21) MUTATED       25      8     10     16     17     33
  AMP PEAK  7(8P11.21) WILD-TYPE     26     25     25     23     25     53
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  7(8P11.21) MUTATED        7      7     15
  AMP PEAK  7(8P11.21) WILD-TYPE     15     13     11
D7V6, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           25                             26
  CLUS_2                            8                             25
  CLUS_3                           10                             25
  CLUS_4                           16                             23
  CLUS_5                           17                             25
  CLUS_6                           33                             53
  CLUS_7                            7                             15
  CLUS_8                            7                             13
  CLUS_9                           15                             11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       56     36     46     48
  AMP PEAK  7(8P11.21) WILD-TYPE     65     71     44     82
D7V7, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           56                             65
  CLUS_2                           36                             71
  CLUS_3                           46                             44
  CLUS_4                           48                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8P11.21) MUTATED       44     49     32     54      7
  AMP PEAK  7(8P11.21) WILD-TYPE     35     59     64     75     29
D7V8, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           44                             35
  CLUS_2                           49                             59
  CLUS_3                           32                             64
  CLUS_4                           54                             75
  CLUS_5                            7                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       71     27     69
  AMP PEAK  7(8P11.21) WILD-TYPE     89     38    103
D7V9, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           71                             89
  CLUS_2                           27                             38
  CLUS_3                           69                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       58     26     33     50
  AMP PEAK  7(8P11.21) WILD-TYPE     77     24     44     85
D7V10, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           58                             77
  CLUS_2                           26                             24
  CLUS_3                           33                             44
  CLUS_4                           50                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       13     18     10
  AMP PEAK  7(8P11.21) WILD-TYPE     16     14     14
D7V11, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           13                             16
  CLUS_2                           18                             14
  CLUS_3                           10                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8P11.21) MUTATED        9     13      6      8      5
  AMP PEAK  7(8P11.21) WILD-TYPE      3      9     11     16      5
D7V12, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                            9                              3
  CLUS_2                           13                              9
  CLUS_3                            6                             11
  CLUS_4                            8                             16
  CLUS_5                            5                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q12.1) MUTATED       15     29     12     13
  AMP PEAK  8(8Q12.1) WILD-TYPE     20     32     17      8
D8V1, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          15                            20
  CLUS_2                          29                            32
  CLUS_3                          12                            17
  CLUS_4                          13                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q12.1) MUTATED       13     34     22
  AMP PEAK  8(8Q12.1) WILD-TYPE     29     38     10
D8V2, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          13                            29
  CLUS_2                          34                            38
  CLUS_3                          22                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q12.1) MUTATED       63     98     75
  AMP PEAK  8(8Q12.1) WILD-TYPE    139     72      3
D8V3, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          63                           139
  CLUS_2                          98                            72
  CLUS_3                          75                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q12.1) MUTATED       81     44     41
  AMP PEAK  8(8Q12.1) WILD-TYPE     39     53     35
D8V4, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          81                            39
  CLUS_2                          44                            53
  CLUS_3                          41                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q12.1) MUTATED       49     71     58
  AMP PEAK  8(8Q12.1) WILD-TYPE     36     73     67
D8V5, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          49                            36
  CLUS_2                          71                            73
  CLUS_3                          58                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q12.1) MUTATED       35     13     15     19     20     41
  AMP PEAK  8(8Q12.1) WILD-TYPE     16     20     20     20     22     45
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  8(8Q12.1) MUTATED        7      9     19
  AMP PEAK  8(8Q12.1) WILD-TYPE     15     11      7
D8V6, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          35                            16
  CLUS_2                          13                            20
  CLUS_3                          15                            20
  CLUS_4                          19                            20
  CLUS_5                          20                            22
  CLUS_6                          41                            45
  CLUS_7                           7                            15
  CLUS_8                           9                            11
  CLUS_9                          19                             7
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q12.1) MUTATED       78     40     55     61
  AMP PEAK  8(8Q12.1) WILD-TYPE     43     67     35     69
D8V7, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          78                            43
  CLUS_2                          40                            67
  CLUS_3                          55                            35
  CLUS_4                          61                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8Q12.1) MUTATED       51     65     39     71      8
  AMP PEAK  8(8Q12.1) WILD-TYPE     28     43     57     58     28
D8V8, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          51                            28
  CLUS_2                          65                            43
  CLUS_3                          39                            57
  CLUS_4                          71                            58
  CLUS_5                           8                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q12.1) MUTATED       91     32     86
  AMP PEAK  8(8Q12.1) WILD-TYPE     69     33     86
D8V9, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          91                            69
  CLUS_2                          32                            33
  CLUS_3                          86                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q12.1) MUTATED       66     30     50     63
  AMP PEAK  8(8Q12.1) WILD-TYPE     69     20     27     72
D8V10, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          66                            69
  CLUS_2                          30                            20
  CLUS_3                          50                            27
  CLUS_4                          63                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q12.1) MUTATED       15     23     14
  AMP PEAK  8(8Q12.1) WILD-TYPE     14      9     10
D8V11, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          15                            14
  CLUS_2                          23                             9
  CLUS_3                          14                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8Q12.1) MUTATED       10     18      9      9      6
  AMP PEAK  8(8Q12.1) WILD-TYPE      2      4      8     15      4
D8V12, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          10                             2
  CLUS_2                          18                             4
  CLUS_3                           9                             8
  CLUS_4                           9                            15
  CLUS_5                           6                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.21) MUTATED       17     33     14     14
  AMP PEAK  9(8Q24.21) WILD-TYPE     18     28     15      7
D9V1, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           17                             18
  CLUS_2                           33                             28
  CLUS_3                           14                             15
  CLUS_4                           14                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       17     38     23
  AMP PEAK  9(8Q24.21) WILD-TYPE     25     34      9
D9V2, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           17                             25
  CLUS_2                           38                             34
  CLUS_3                           23                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       72    111     77
  AMP PEAK  9(8Q24.21) WILD-TYPE    130     59      1
D9V3, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           72                            130
  CLUS_2                          111                             59
  CLUS_3                           77                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       90     46     44
  AMP PEAK  9(8Q24.21) WILD-TYPE     30     51     32
D9V4, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           90                             30
  CLUS_2                           46                             51
  CLUS_3                           44                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       54     77     64
  AMP PEAK  9(8Q24.21) WILD-TYPE     31     67     61
D9V5, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           54                             31
  CLUS_2                           77                             67
  CLUS_3                           64                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q24.21) MUTATED       36     15     16     21     23     47
  AMP PEAK  9(8Q24.21) WILD-TYPE     15     18     19     18     19     39
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  9(8Q24.21) MUTATED        9      9     19
  AMP PEAK  9(8Q24.21) WILD-TYPE     13     11      7
D9V6, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           36                             15
  CLUS_2                           15                             18
  CLUS_3                           16                             19
  CLUS_4                           21                             18
  CLUS_5                           23                             19
  CLUS_6                           47                             39
  CLUS_7                            9                             13
  CLUS_8                            9                             11
  CLUS_9                           19                              7
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.21) MUTATED       84     46     59     69
  AMP PEAK  9(8Q24.21) WILD-TYPE     37     61     31     61
D9V7, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           84                             37
  CLUS_2                           46                             61
  CLUS_3                           59                             31
  CLUS_4                           69                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8Q24.21) MUTATED       56     69     44     78     11
  AMP PEAK  9(8Q24.21) WILD-TYPE     23     39     52     51     25
D9V8, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           56                             23
  CLUS_2                           69                             39
  CLUS_3                           44                             52
  CLUS_4                           78                             51
  CLUS_5                           11                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       97     36     98
  AMP PEAK  9(8Q24.21) WILD-TYPE     63     29     74
D9V9, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           97                             63
  CLUS_2                           36                             29
  CLUS_3                           98                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.21) MUTATED       73     33     54     71
  AMP PEAK  9(8Q24.21) WILD-TYPE     62     17     23     64
D9V10, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           73                             62
  CLUS_2                           33                             17
  CLUS_3                           54                             23
  CLUS_4                           71                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       16     24     16
  AMP PEAK  9(8Q24.21) WILD-TYPE     13      8      8
D9V11, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           16                             13
  CLUS_2                           24                              8
  CLUS_3                           16                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8Q24.21) MUTATED       10     19     11     10      6
  AMP PEAK  9(8Q24.21) WILD-TYPE      2      3      6     14      4
D9V12, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                           19                              3
  CLUS_3                           11                              6
  CLUS_4                           10                             14
  CLUS_5                            6                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11P15.5) MUTATED        2     18      3     12
  AMP PEAK 10(11P15.5) WILD-TYPE     33     43     26      9
D10V1, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                           18                             43
  CLUS_3                            3                             26
  CLUS_4                           12                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11P15.5) MUTATED        3     21     11
  AMP PEAK 10(11P15.5) WILD-TYPE     39     51     21
D10V2, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           21                             51
  CLUS_3                           11                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11P15.5) MUTATED       23     50     21
  AMP PEAK 10(11P15.5) WILD-TYPE    179    120     57
D10V3, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           23                            179
  CLUS_2                           50                            120
  CLUS_3                           21                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11P15.5) MUTATED       35      6     15
  AMP PEAK 10(11P15.5) WILD-TYPE     85     91     61
D10V4, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           35                             85
  CLUS_2                            6                             91
  CLUS_3                           15                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11P15.5) MUTATED       22     32     19
  AMP PEAK 10(11P15.5) WILD-TYPE     63    112    106
D10V5, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           22                             63
  CLUS_2                           32                            112
  CLUS_3                           19                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(11P15.5) MUTATED       15      7     10      5     10     10
  AMP PEAK 10(11P15.5) WILD-TYPE     36     26     25     34     32     76
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 10(11P15.5) MUTATED        6      4      6
  AMP PEAK 10(11P15.5) WILD-TYPE     16     16     20
D10V6, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           15                             36
  CLUS_2                            7                             26
  CLUS_3                           10                             25
  CLUS_4                            5                             34
  CLUS_5                           10                             32
  CLUS_6                           10                             76
  CLUS_7                            6                             16
  CLUS_8                            4                             16
  CLUS_9                            6                             20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11P15.5) MUTATED       40      6     17     30
  AMP PEAK 10(11P15.5) WILD-TYPE     81    101     73    100
D10V7, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           40                             81
  CLUS_2                            6                            101
  CLUS_3                           17                             73
  CLUS_4                           30                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(11P15.5) MUTATED       21     27      3     41      1
  AMP PEAK 10(11P15.5) WILD-TYPE     58     81     93     88     35
D10V8, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           21                             58
  CLUS_2                           27                             81
  CLUS_3                            3                             93
  CLUS_4                           41                             88
  CLUS_5                            1                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11P15.5) MUTATED       28     11     45
  AMP PEAK 10(11P15.5) WILD-TYPE    132     54    127
D10V9, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           28                            132
  CLUS_2                           11                             54
  CLUS_3                           45                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11P15.5) MUTATED        8     12     46     18
  AMP PEAK 10(11P15.5) WILD-TYPE    127     38     31    117
D10V10, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                            8                            127
  CLUS_2                           12                             38
  CLUS_3                           46                             31
  CLUS_4                           18                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11P15.5) MUTATED        5      7      5
  AMP PEAK 10(11P15.5) WILD-TYPE     24     25     19
D10V11, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                            7                             25
  CLUS_3                            5                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(11P15.5) MUTATED        4      7      2      3      1
  AMP PEAK 10(11P15.5) WILD-TYPE      8     15     15     21      9
D10V12, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            7                             15
  CLUS_3                            2                             15
  CLUS_4                            3                             21
  CLUS_5                            1                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P13.33) MUTATED        9     12      9      5
  AMP PEAK 11(12P13.33) WILD-TYPE     26     49     20     16
D11V1, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             9                              26
  CLUS_2                            12                              49
  CLUS_3                             9                              20
  CLUS_4                             5                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED        9     17      9
  AMP PEAK 11(12P13.33) WILD-TYPE     33     55     23
D11V2, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             9                              33
  CLUS_2                            17                              55
  CLUS_3                             9                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED       55     31     25
  AMP PEAK 11(12P13.33) WILD-TYPE    147    139     53
D11V3, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            55                             147
  CLUS_2                            31                             139
  CLUS_3                            25                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED       21     30     20
  AMP PEAK 11(12P13.33) WILD-TYPE     99     67     56
D11V4, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            21                              99
  CLUS_2                            30                              67
  CLUS_3                            20                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED       22     32     30
  AMP PEAK 11(12P13.33) WILD-TYPE     63    112     95
D11V5, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            22                              63
  CLUS_2                            32                             112
  CLUS_3                            30                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P13.33) MUTATED       13      4     11      9     10     24
  AMP PEAK 11(12P13.33) WILD-TYPE     38     29     24     30     32     62
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 11(12P13.33) MUTATED        5      2      6
  AMP PEAK 11(12P13.33) WILD-TYPE     17     18     20
D11V6, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            13                              38
  CLUS_2                             4                              29
  CLUS_3                            11                              24
  CLUS_4                             9                              30
  CLUS_5                            10                              32
  CLUS_6                            24                              62
  CLUS_7                             5                              17
  CLUS_8                             2                              18
  CLUS_9                             6                              20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P13.33) MUTATED       26     29     24     32
  AMP PEAK 11(12P13.33) WILD-TYPE     95     78     66     98
D11V7, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            26                              95
  CLUS_2                            29                              78
  CLUS_3                            24                              66
  CLUS_4                            32                              98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P13.33) MUTATED       17     31     23     31      9
  AMP PEAK 11(12P13.33) WILD-TYPE     62     77     73     98     27
D11V8, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            17                              62
  CLUS_2                            31                              77
  CLUS_3                            23                              73
  CLUS_4                            31                              98
  CLUS_5                             9                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED       44     13     44
  AMP PEAK 11(12P13.33) WILD-TYPE    116     52    128
D11V9, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            44                             116
  CLUS_2                            13                              52
  CLUS_3                            44                             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P13.33) MUTATED       34     10     20     37
  AMP PEAK 11(12P13.33) WILD-TYPE    101     40     57     98
D11V10, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            34                             101
  CLUS_2                            10                              40
  CLUS_3                            20                              57
  CLUS_4                            37                              98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED        6     10      5
  AMP PEAK 11(12P13.33) WILD-TYPE     23     22     19
D11V11, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             6                              23
  CLUS_2                            10                              22
  CLUS_3                             5                              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P13.33) MUTATED        2      7      5      5      2
  AMP PEAK 11(12P13.33) WILD-TYPE     10     15     12     19      8
D11V12, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             2                              10
  CLUS_2                             7                              15
  CLUS_3                             5                              12
  CLUS_4                             5                              19
  CLUS_5                             2                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q12.13) MUTATED       15     51     10     16
  AMP PEAK 12(13Q12.13) WILD-TYPE     20     10     19      5
D12V1, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            15                              20
  CLUS_2                            51                              10
  CLUS_3                            10                              19
  CLUS_4                            16                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED       13     49     30
  AMP PEAK 12(13Q12.13) WILD-TYPE     29     23      2
D12V2, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            13                              29
  CLUS_2                            49                              23
  CLUS_3                            30                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED       66    159     50
  AMP PEAK 12(13Q12.13) WILD-TYPE    136     11     28
D12V3, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            66                             136
  CLUS_2                           159                              11
  CLUS_3                            50                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED      101     43     36
  AMP PEAK 12(13Q12.13) WILD-TYPE     19     54     40
D12V4, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                           101                              19
  CLUS_2                            43                              54
  CLUS_3                            36                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED       55     94     66
  AMP PEAK 12(13Q12.13) WILD-TYPE     30     50     59
D12V5, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            55                              30
  CLUS_2                            94                              50
  CLUS_3                            66                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(13Q12.13) MUTATED       34     15     26     26     28     42
  AMP PEAK 12(13Q12.13) WILD-TYPE     17     18      9     13     14     44
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 12(13Q12.13) MUTATED       13     13     18
  AMP PEAK 12(13Q12.13) WILD-TYPE      9      7      8
D12V6, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            34                              17
  CLUS_2                            15                              18
  CLUS_3                            26                               9
  CLUS_4                            26                              13
  CLUS_5                            28                              14
  CLUS_6                            42                              44
  CLUS_7                            13                               9
  CLUS_8                            13                               7
  CLUS_9                            18                               8
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q12.13) MUTATED       92     37     55     89
  AMP PEAK 12(13Q12.13) WILD-TYPE     29     70     35     41
D12V7, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            92                              29
  CLUS_2                            37                              70
  CLUS_3                            55                              35
  CLUS_4                            89                              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q12.13) MUTATED       68     76     26     95      8
  AMP PEAK 12(13Q12.13) WILD-TYPE     11     32     70     34     28
D12V8, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            68                              11
  CLUS_2                            76                              32
  CLUS_3                            26                              70
  CLUS_4                            95                              34
  CLUS_5                             8                              28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED       99     36    108
  AMP PEAK 12(13Q12.13) WILD-TYPE     61     29     64
D12V9, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            99                              61
  CLUS_2                            36                              29
  CLUS_3                           108                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q12.13) MUTATED       81     30     45     87
  AMP PEAK 12(13Q12.13) WILD-TYPE     54     20     32     48
D12V10, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            81                              54
  CLUS_2                            30                              20
  CLUS_3                            45                              32
  CLUS_4                            87                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED       19     20     19
  AMP PEAK 12(13Q12.13) WILD-TYPE     10     12      5
D12V11, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            19                              10
  CLUS_2                            20                              12
  CLUS_3                            19                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q12.13) MUTATED       10     19     13     11      5
  AMP PEAK 12(13Q12.13) WILD-TYPE      2      3      4     13      5
D12V12, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            10                               2
  CLUS_2                            19                               3
  CLUS_3                            13                               4
  CLUS_4                            11                              13
  CLUS_5                             5                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q22.1) MUTATED       15     49     12     15
  AMP PEAK 13(13Q22.1) WILD-TYPE     20     12     17      6
D13V1, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                           15                             20
  CLUS_2                           49                             12
  CLUS_3                           12                             17
  CLUS_4                           15                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q22.1) MUTATED       13     48     30
  AMP PEAK 13(13Q22.1) WILD-TYPE     29     24      2
D13V2, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                           48                             24
  CLUS_3                           30                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q22.1) MUTATED       71    155     51
  AMP PEAK 13(13Q22.1) WILD-TYPE    131     15     27
D13V3, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                           71                            131
  CLUS_2                          155                             15
  CLUS_3                           51                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q22.1) MUTATED       99     47     36
  AMP PEAK 13(13Q22.1) WILD-TYPE     21     50     40
D13V4, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                           99                             21
  CLUS_2                           47                             50
  CLUS_3                           36                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q22.1) MUTATED       56     92     67
  AMP PEAK 13(13Q22.1) WILD-TYPE     29     52     58
D13V5, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                           56                             29
  CLUS_2                           92                             52
  CLUS_3                           67                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(13Q22.1) MUTATED       35     16     25     25     28     42
  AMP PEAK 13(13Q22.1) WILD-TYPE     16     17     10     14     14     44
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 13(13Q22.1) MUTATED       13     12     19
  AMP PEAK 13(13Q22.1) WILD-TYPE      9      8      7
D13V6, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                           35                             16
  CLUS_2                           16                             17
  CLUS_3                           25                             10
  CLUS_4                           25                             14
  CLUS_5                           28                             14
  CLUS_6                           42                             44
  CLUS_7                           13                              9
  CLUS_8                           12                              8
  CLUS_9                           19                              7
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q22.1) MUTATED       92     40     56     87
  AMP PEAK 13(13Q22.1) WILD-TYPE     29     67     34     43
D13V7, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                           92                             29
  CLUS_2                           40                             67
  CLUS_3                           56                             34
  CLUS_4                           87                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q22.1) MUTATED       67     76     30     93      9
  AMP PEAK 13(13Q22.1) WILD-TYPE     12     32     66     36     27
D13V8, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                           67                             12
  CLUS_2                           76                             32
  CLUS_3                           30                             66
  CLUS_4                           93                             36
  CLUS_5                            9                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q22.1) MUTATED      103     36    107
  AMP PEAK 13(13Q22.1) WILD-TYPE     57     29     65
D13V9, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                          103                             57
  CLUS_2                           36                             29
  CLUS_3                          107                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q22.1) MUTATED       83     31     47     85
  AMP PEAK 13(13Q22.1) WILD-TYPE     52     19     30     50
D13V10, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                           83                             52
  CLUS_2                           31                             19
  CLUS_3                           47                             30
  CLUS_4                           85                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q22.1) MUTATED       21     20     19
  AMP PEAK 13(13Q22.1) WILD-TYPE      8     12      5
D13V11, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                           21                              8
  CLUS_2                           20                             12
  CLUS_3                           19                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q22.1) MUTATED       10     18     14     12      6
  AMP PEAK 13(13Q22.1) WILD-TYPE      2      4      3     12      4
D13V12, multiclass
        clus
vv       AMP PEAK 13(13Q22.1) MUTATED AMP PEAK 13(13Q22.1) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                           18                              4
  CLUS_3                           14                              3
  CLUS_4                           12                             12
  CLUS_5                            6                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16P11.2) MUTATED        6     24      3     12
  AMP PEAK 14(16P11.2) WILD-TYPE     29     37     26      9
D14V1, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                           24                             37
  CLUS_3                            3                             26
  CLUS_4                           12                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16P11.2) MUTATED        6     16     23
  AMP PEAK 14(16P11.2) WILD-TYPE     36     56      9
D14V2, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                           16                             56
  CLUS_3                           23                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16P11.2) MUTATED       20     89     17
  AMP PEAK 14(16P11.2) WILD-TYPE    182     81     61
D14V3, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                           20                            182
  CLUS_2                           89                             81
  CLUS_3                           17                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16P11.2) MUTATED       43     17     20
  AMP PEAK 14(16P11.2) WILD-TYPE     77     80     56
D14V4, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                           43                             77
  CLUS_2                           17                             80
  CLUS_3                           20                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16P11.2) MUTATED       31     35     31
  AMP PEAK 14(16P11.2) WILD-TYPE     54    109     94
D14V5, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                           31                             54
  CLUS_2                           35                            109
  CLUS_3                           31                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(16P11.2) MUTATED       20      3     14     12     12     22
  AMP PEAK 14(16P11.2) WILD-TYPE     31     30     21     27     30     64
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 14(16P11.2) MUTATED        2      6      6
  AMP PEAK 14(16P11.2) WILD-TYPE     20     14     20
D14V6, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                           20                             31
  CLUS_2                            3                             30
  CLUS_3                           14                             21
  CLUS_4                           12                             27
  CLUS_5                           12                             30
  CLUS_6                           22                             64
  CLUS_7                            2                             20
  CLUS_8                            6                             14
  CLUS_9                            6                             20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16P11.2) MUTATED       43     16     23     44
  AMP PEAK 14(16P11.2) WILD-TYPE     78     91     67     86
D14V7, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                           43                             78
  CLUS_2                           16                             91
  CLUS_3                           23                             67
  CLUS_4                           44                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(16P11.2) MUTATED       30     30     12     53      1
  AMP PEAK 14(16P11.2) WILD-TYPE     49     78     84     76     35
D14V8, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                           30                             49
  CLUS_2                           30                             78
  CLUS_3                           12                             84
  CLUS_4                           53                             76
  CLUS_5                            1                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16P11.2) MUTATED       47     17     50
  AMP PEAK 14(16P11.2) WILD-TYPE    113     48    122
D14V9, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                           47                            113
  CLUS_2                           17                             48
  CLUS_3                           50                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16P11.2) MUTATED       29     16     25     44
  AMP PEAK 14(16P11.2) WILD-TYPE    106     34     52     91
D14V10, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                           29                            106
  CLUS_2                           16                             34
  CLUS_3                           25                             52
  CLUS_4                           44                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16P11.2) MUTATED       10     12      8
  AMP PEAK 14(16P11.2) WILD-TYPE     19     20     16
D14V11, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                           10                             19
  CLUS_2                           12                             20
  CLUS_3                            8                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(16P11.2) MUTATED        7     11      5      4      3
  AMP PEAK 14(16P11.2) WILD-TYPE      5     11     12     20      7
D14V12, multiclass
        clus
vv       AMP PEAK 14(16P11.2) MUTATED AMP PEAK 14(16P11.2) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                           11                             11
  CLUS_3                            5                             12
  CLUS_4                            4                             20
  CLUS_5                            3                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(16Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(16Q12.1) MUTATED        4     22      2     12
  AMP PEAK 15(16Q12.1) WILD-TYPE     31     39     27      9
D15V1, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                           22                             39
  CLUS_3                            2                             27
  CLUS_4                           12                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q12.1) MUTATED        3     17     20
  AMP PEAK 15(16Q12.1) WILD-TYPE     39     55     12
D15V2, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           17                             55
  CLUS_3                           20                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q12.1) MUTATED       16     82     13
  AMP PEAK 15(16Q12.1) WILD-TYPE    186     88     65
D15V3, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                           16                            186
  CLUS_2                           82                             88
  CLUS_3                           13                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q12.1) MUTATED       37     15     18
  AMP PEAK 15(16Q12.1) WILD-TYPE     83     82     58
D15V4, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                           37                             83
  CLUS_2                           15                             82
  CLUS_3                           18                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q12.1) MUTATED       29     29     27
  AMP PEAK 15(16Q12.1) WILD-TYPE     56    115     98
D15V5, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                           29                             56
  CLUS_2                           29                            115
  CLUS_3                           27                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(16Q12.1) MUTATED       17      3     13      7     11     20
  AMP PEAK 15(16Q12.1) WILD-TYPE     34     30     22     32     31     66
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 15(16Q12.1) MUTATED        2      6      6
  AMP PEAK 15(16Q12.1) WILD-TYPE     20     14     20
D15V6, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                           17                             34
  CLUS_2                            3                             30
  CLUS_3                           13                             22
  CLUS_4                            7                             32
  CLUS_5                           11                             31
  CLUS_6                           20                             66
  CLUS_7                            2                             20
  CLUS_8                            6                             14
  CLUS_9                            6                             20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(16Q12.1) MUTATED       39     13     20     39
  AMP PEAK 15(16Q12.1) WILD-TYPE     82     94     70     91
D15V7, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                           39                             82
  CLUS_2                           13                             94
  CLUS_3                           20                             70
  CLUS_4                           39                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(16Q12.1) MUTATED       29     25     10     47      0
  AMP PEAK 15(16Q12.1) WILD-TYPE     50     83     86     82     36
D15V8, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                           29                             50
  CLUS_2                           25                             83
  CLUS_3                           10                             86
  CLUS_4                           47                             82
  CLUS_5                            0                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q12.1) MUTATED       40     17     43
  AMP PEAK 15(16Q12.1) WILD-TYPE    120     48    129
D15V9, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                           40                            120
  CLUS_2                           17                             48
  CLUS_3                           43                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(16Q12.1) MUTATED       24     15     24     37
  AMP PEAK 15(16Q12.1) WILD-TYPE    111     35     53     98
D15V10, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                           24                            111
  CLUS_2                           15                             35
  CLUS_3                           24                             53
  CLUS_4                           37                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q12.1) MUTATED        8     12      6
  AMP PEAK 15(16Q12.1) WILD-TYPE     21     20     18
D15V11, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                            8                             21
  CLUS_2                           12                             20
  CLUS_3                            6                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(16Q12.1) MUTATED        7     10      4      3      2
  AMP PEAK 15(16Q12.1) WILD-TYPE      5     12     13     21      8
D15V12, multiclass
        clus
vv       AMP PEAK 15(16Q12.1) MUTATED AMP PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                           10                             12
  CLUS_3                            4                             13
  CLUS_4                            3                             21
  CLUS_5                            2                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17P11.2) MUTATED        2      6      1      4
  AMP PEAK 16(17P11.2) WILD-TYPE     33     55     28     17
D16V1, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                            6                             55
  CLUS_3                            1                             28
  CLUS_4                            4                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17P11.2) MUTATED        2      3      8
  AMP PEAK 16(17P11.2) WILD-TYPE     40     69     24
D16V2, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                            2                             40
  CLUS_2                            3                             69
  CLUS_3                            8                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17P11.2) MUTATED       13     26      5
  AMP PEAK 16(17P11.2) WILD-TYPE    189    144     73
D16V3, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                           13                            189
  CLUS_2                           26                            144
  CLUS_3                            5                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17P11.2) MUTATED       20      8      4
  AMP PEAK 16(17P11.2) WILD-TYPE    100     89     72
D16V4, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                           20                            100
  CLUS_2                            8                             89
  CLUS_3                            4                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17P11.2) MUTATED        7     15     13
  AMP PEAK 16(17P11.2) WILD-TYPE     78    129    112
D16V5, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                            7                             78
  CLUS_2                           15                            129
  CLUS_3                           13                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(17P11.2) MUTATED        8      3      1      5      7      8
  AMP PEAK 16(17P11.2) WILD-TYPE     43     30     34     34     35     78
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 16(17P11.2) MUTATED        0      2      1
  AMP PEAK 16(17P11.2) WILD-TYPE     22     18     25
D16V6, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                            8                             43
  CLUS_2                            3                             30
  CLUS_3                            1                             34
  CLUS_4                            5                             34
  CLUS_5                            7                             35
  CLUS_6                            8                             78
  CLUS_7                            0                             22
  CLUS_8                            2                             18
  CLUS_9                            1                             25
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17P11.2) MUTATED       15      4     10     15
  AMP PEAK 16(17P11.2) WILD-TYPE    106    103     80    115
D16V7, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                           15                            106
  CLUS_2                            4                            103
  CLUS_3                           10                             80
  CLUS_4                           15                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17P11.2) MUTATED       12     12      5     13      2
  AMP PEAK 16(17P11.2) WILD-TYPE     67     96     91    116     34
D16V8, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                           12                             67
  CLUS_2                           12                             96
  CLUS_3                            5                             91
  CLUS_4                           13                            116
  CLUS_5                            2                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17P11.2) MUTATED       19      5     15
  AMP PEAK 16(17P11.2) WILD-TYPE    141     60    157
D16V9, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                           19                            141
  CLUS_2                            5                             60
  CLUS_3                           15                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17P11.2) MUTATED       12      5      6     16
  AMP PEAK 16(17P11.2) WILD-TYPE    123     45     71    119
D16V10, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                           12                            123
  CLUS_2                            5                             45
  CLUS_3                            6                             71
  CLUS_4                           16                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17P11.2) MUTATED        3      7      1
  AMP PEAK 16(17P11.2) WILD-TYPE     26     25     23
D16V11, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                            3                             26
  CLUS_2                            7                             25
  CLUS_3                            1                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17P11.2) MUTATED        0      6      0      4      1
  AMP PEAK 16(17P11.2) WILD-TYPE     12     16     17     20      9
D16V12, multiclass
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  CLUS_1                            0                             12
  CLUS_2                            6                             16
  CLUS_3                            0                             17
  CLUS_4                            4                             20
  CLUS_5                            1                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q12) MUTATED        4     21      4      7
  AMP PEAK 17(17Q12) WILD-TYPE     31     40     25     14
D17V1, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                          4                           31
  CLUS_2                         21                           40
  CLUS_3                          4                           25
  CLUS_4                          7                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q12) MUTATED        6     16     14
  AMP PEAK 17(17Q12) WILD-TYPE     36     56     18
D17V2, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                          6                           36
  CLUS_2                         16                           56
  CLUS_3                         14                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q12) MUTATED       25     63     26
  AMP PEAK 17(17Q12) WILD-TYPE    177    107     52
D17V3, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         25                          177
  CLUS_2                         63                          107
  CLUS_3                         26                           52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q12) MUTATED       48     18     11
  AMP PEAK 17(17Q12) WILD-TYPE     72     79     65
D17V4, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         48                           72
  CLUS_2                         18                           79
  CLUS_3                         11                           65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q12) MUTATED       22     35     26
  AMP PEAK 17(17Q12) WILD-TYPE     63    109     99
D17V5, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         22                           63
  CLUS_2                         35                          109
  CLUS_3                         26                           99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(17Q12) MUTATED       17      5      6      8     13     19      0
  AMP PEAK 17(17Q12) WILD-TYPE     34     28     29     31     29     67     22
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 17(17Q12) MUTATED        5     10
  AMP PEAK 17(17Q12) WILD-TYPE     15     16
D17V6, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         17                           34
  CLUS_2                          5                           28
  CLUS_3                          6                           29
  CLUS_4                          8                           31
  CLUS_5                         13                           29
  CLUS_6                         19                           67
  CLUS_7                          0                           22
  CLUS_8                          5                           15
  CLUS_9                         10                           16
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q12) MUTATED       50     15     16     32
  AMP PEAK 17(17Q12) WILD-TYPE     71     92     74     98
D17V7, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         50                           71
  CLUS_2                         15                           92
  CLUS_3                         16                           74
  CLUS_4                         32                           98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q12) MUTATED       21     38     12     37      5
  AMP PEAK 17(17Q12) WILD-TYPE     58     70     84     92     31
D17V8, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         21                           58
  CLUS_2                         38                           70
  CLUS_3                         12                           84
  CLUS_4                         37                           92
  CLUS_5                          5                           31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q12) MUTATED       48      9     44
  AMP PEAK 17(17Q12) WILD-TYPE    112     56    128
D17V9, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         48                          112
  CLUS_2                          9                           56
  CLUS_3                         44                          128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q12) MUTATED       30     12     31     28
  AMP PEAK 17(17Q12) WILD-TYPE    105     38     46    107
D17V10, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         30                          105
  CLUS_2                         12                           38
  CLUS_3                         31                           46
  CLUS_4                         28                          107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q12) MUTATED       10      8      5
  AMP PEAK 17(17Q12) WILD-TYPE     19     24     19
D17V11, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         10                           19
  CLUS_2                          8                           24
  CLUS_3                          5                           19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q12) MUTATED        3      8      3      5      4
  AMP PEAK 17(17Q12) WILD-TYPE      9     14     14     19      6
D17V12, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                          3                            9
  CLUS_2                          8                           14
  CLUS_3                          3                           14
  CLUS_4                          5                           19
  CLUS_5                          4                            6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(17Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q24.1) MUTATED        2     19      5      6
  AMP PEAK 18(17Q24.1) WILD-TYPE     33     42     24     15
D18V1, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                           19                             42
  CLUS_3                            5                             24
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q24.1) MUTATED        4     15     13
  AMP PEAK 18(17Q24.1) WILD-TYPE     38     57     19
D18V2, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                           15                             57
  CLUS_3                           13                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q24.1) MUTATED       20     59     27
  AMP PEAK 18(17Q24.1) WILD-TYPE    182    111     51
D18V3, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           20                            182
  CLUS_2                           59                            111
  CLUS_3                           27                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q24.1) MUTATED       47     18      8
  AMP PEAK 18(17Q24.1) WILD-TYPE     73     79     68
D18V4, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           47                             73
  CLUS_2                           18                             79
  CLUS_3                            8                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q24.1) MUTATED       23     33     23
  AMP PEAK 18(17Q24.1) WILD-TYPE     62    111    102
D18V5, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           23                             62
  CLUS_2                           33                            111
  CLUS_3                           23                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17Q24.1) MUTATED       12      8      8      7     13     16
  AMP PEAK 18(17Q24.1) WILD-TYPE     39     25     27     32     29     70
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 18(17Q24.1) MUTATED        0      5     10
  AMP PEAK 18(17Q24.1) WILD-TYPE     22     15     16
D18V6, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           12                             39
  CLUS_2                            8                             25
  CLUS_3                            8                             27
  CLUS_4                            7                             32
  CLUS_5                           13                             29
  CLUS_6                           16                             70
  CLUS_7                            0                             22
  CLUS_8                            5                             15
  CLUS_9                           10                             16
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q24.1) MUTATED       49     15     14     28
  AMP PEAK 18(17Q24.1) WILD-TYPE     72     92     76    102
D18V7, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           49                             72
  CLUS_2                           15                             92
  CLUS_3                           14                             76
  CLUS_4                           28                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17Q24.1) MUTATED       21     39      8     34      4
  AMP PEAK 18(17Q24.1) WILD-TYPE     58     69     88     95     32
D18V8, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           21                             58
  CLUS_2                           39                             69
  CLUS_3                            8                             88
  CLUS_4                           34                             95
  CLUS_5                            4                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q24.1) MUTATED       46      7     39
  AMP PEAK 18(17Q24.1) WILD-TYPE    114     58    133
D18V9, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           46                            114
  CLUS_2                            7                             58
  CLUS_3                           39                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q24.1) MUTATED       30      9     27     26
  AMP PEAK 18(17Q24.1) WILD-TYPE    105     41     50    109
D18V10, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           30                            105
  CLUS_2                            9                             41
  CLUS_3                           27                             50
  CLUS_4                           26                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q24.1) MUTATED        9      4      5
  AMP PEAK 18(17Q24.1) WILD-TYPE     20     28     19
D18V11, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                            4                             28
  CLUS_3                            5                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17Q24.1) MUTATED        2      7      2      4      3
  AMP PEAK 18(17Q24.1) WILD-TYPE     10     15     15     20      7
D18V12, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            7                             15
  CLUS_3                            2                             15
  CLUS_4                            4                             20
  CLUS_5                            3                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED        1     12      4      1
  AMP PEAK 19(19P13.2) WILD-TYPE     34     49     25     20
D19V1, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            1                             34
  CLUS_2                           12                             49
  CLUS_3                            4                             25
  CLUS_4                            1                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED        1     12      5
  AMP PEAK 19(19P13.2) WILD-TYPE     41     60     27
D19V2, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            1                             41
  CLUS_2                           12                             60
  CLUS_3                            5                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED       17     44     14
  AMP PEAK 19(19P13.2) WILD-TYPE    185    126     64
D19V3, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           17                            185
  CLUS_2                           44                            126
  CLUS_3                           14                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED       33     15      9
  AMP PEAK 19(19P13.2) WILD-TYPE     87     82     67
D19V4, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           33                             87
  CLUS_2                           15                             82
  CLUS_3                            9                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED       15     29     17
  AMP PEAK 19(19P13.2) WILD-TYPE     70    115    108
D19V5, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           15                             70
  CLUS_2                           29                            115
  CLUS_3                           17                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(19P13.2) MUTATED       13      5      9      5      7     13
  AMP PEAK 19(19P13.2) WILD-TYPE     38     28     26     34     35     73
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 19(19P13.2) MUTATED        0      5      4
  AMP PEAK 19(19P13.2) WILD-TYPE     22     15     22
D19V6, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           13                             38
  CLUS_2                            5                             28
  CLUS_3                            9                             26
  CLUS_4                            5                             34
  CLUS_5                            7                             35
  CLUS_6                           13                             73
  CLUS_7                            0                             22
  CLUS_8                            5                             15
  CLUS_9                            4                             22
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED       24     13     16     22
  AMP PEAK 19(19P13.2) WILD-TYPE     97     94     74    108
D19V7, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           24                             97
  CLUS_2                           13                             94
  CLUS_3                           16                             74
  CLUS_4                           22                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(19P13.2) MUTATED       25     18      9     22      1
  AMP PEAK 19(19P13.2) WILD-TYPE     54     90     87    107     35
D19V8, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           25                             54
  CLUS_2                           18                             90
  CLUS_3                            9                             87
  CLUS_4                           22                            107
  CLUS_5                            1                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED       28     14     24
  AMP PEAK 19(19P13.2) WILD-TYPE    132     51    148
D19V9, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           28                            132
  CLUS_2                           14                             51
  CLUS_3                           24                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED       22     12     10     22
  AMP PEAK 19(19P13.2) WILD-TYPE    113     38     67    113
D19V10, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           22                            113
  CLUS_2                           12                             38
  CLUS_3                           10                             67
  CLUS_4                           22                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED        5      8      1
  AMP PEAK 19(19P13.2) WILD-TYPE     24     24     23
D19V11, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                            8                             24
  CLUS_3                            1                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(19P13.2) MUTATED        3      8      1      1      1
  AMP PEAK 19(19P13.2) WILD-TYPE      9     14     16     23      9
D19V12, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            3                              9
  CLUS_2                            8                             14
  CLUS_3                            1                             16
  CLUS_4                            1                             23
  CLUS_5                            1                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(19Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19Q13.11) MUTATED        2     13      6      4
  AMP PEAK 20(19Q13.11) WILD-TYPE     33     48     23     17
D20V1, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                             2                              33
  CLUS_2                            13                              48
  CLUS_3                             6                              23
  CLUS_4                             4                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19Q13.11) MUTATED        2     16      7
  AMP PEAK 20(19Q13.11) WILD-TYPE     40     56     25
D20V2, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                             2                              40
  CLUS_2                            16                              56
  CLUS_3                             7                              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19Q13.11) MUTATED       27     54     14
  AMP PEAK 20(19Q13.11) WILD-TYPE    175    116     64
D20V3, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                            27                             175
  CLUS_2                            54                             116
  CLUS_3                            14                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19Q13.11) MUTATED       35     20     15
  AMP PEAK 20(19Q13.11) WILD-TYPE     85     77     61
D20V4, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                            35                              85
  CLUS_2                            20                              77
  CLUS_3                            15                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19Q13.11) MUTATED       25     33     17
  AMP PEAK 20(19Q13.11) WILD-TYPE     60    111    108
D20V5, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                            25                              60
  CLUS_2                            33                             111
  CLUS_3                            17                             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19Q13.11) MUTATED       14      7      8      7      9     18
  AMP PEAK 20(19Q13.11) WILD-TYPE     37     26     27     32     33     68
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 20(19Q13.11) MUTATED        2      6      4
  AMP PEAK 20(19Q13.11) WILD-TYPE     20     14     22
D20V6, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                            14                              37
  CLUS_2                             7                              26
  CLUS_3                             8                              27
  CLUS_4                             7                              32
  CLUS_5                             9                              33
  CLUS_6                            18                              68
  CLUS_7                             2                              20
  CLUS_8                             6                              14
  CLUS_9                             4                              22
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19Q13.11) MUTATED       30     21     22     22
  AMP PEAK 20(19Q13.11) WILD-TYPE     91     86     68    108
D20V7, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                            30                              91
  CLUS_2                            21                              86
  CLUS_3                            22                              68
  CLUS_4                            22                             108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(19Q13.11) MUTATED       28     24     13     29      1
  AMP PEAK 20(19Q13.11) WILD-TYPE     51     84     83    100     35
D20V8, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                            28                              51
  CLUS_2                            24                              84
  CLUS_3                            13                              83
  CLUS_4                            29                             100
  CLUS_5                             1                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19Q13.11) MUTATED       35     16     31
  AMP PEAK 20(19Q13.11) WILD-TYPE    125     49    141
D20V9, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                            35                             125
  CLUS_2                            16                              49
  CLUS_3                            31                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19Q13.11) MUTATED       27     12     12     31
  AMP PEAK 20(19Q13.11) WILD-TYPE    108     38     65    104
D20V10, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                            27                             108
  CLUS_2                            12                              38
  CLUS_3                            12                              65
  CLUS_4                            31                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19Q13.11) MUTATED        5     11      1
  AMP PEAK 20(19Q13.11) WILD-TYPE     24     21     23
D20V11, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                             5                              24
  CLUS_2                            11                              21
  CLUS_3                             1                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(19Q13.11) MUTATED        4     10      1      1      1
  AMP PEAK 20(19Q13.11) WILD-TYPE      8     12     16     23      9
D20V12, multiclass
        clus
vv       AMP PEAK 20(19Q13.11) MUTATED AMP PEAK 20(19Q13.11) WILD-TYPE
  CLUS_1                             4                               8
  CLUS_2                            10                              12
  CLUS_3                             1                              16
  CLUS_4                             1                              23
  CLUS_5                             1                               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20P12.1) MUTATED       12     33     13     15
  AMP PEAK 21(20P12.1) WILD-TYPE     23     28     16      6
D21V1, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                           12                             23
  CLUS_2                           33                             28
  CLUS_3                           13                             16
  CLUS_4                           15                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20P12.1) MUTATED       11     44     18
  AMP PEAK 21(20P12.1) WILD-TYPE     31     28     14
D21V2, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                           44                             28
  CLUS_3                           18                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20P12.1) MUTATED       65    104     39
  AMP PEAK 21(20P12.1) WILD-TYPE    137     66     39
D21V3, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                           65                            137
  CLUS_2                          104                             66
  CLUS_3                           39                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20P12.1) MUTATED       63     39     29
  AMP PEAK 21(20P12.1) WILD-TYPE     57     58     47
D21V4, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                           63                             57
  CLUS_2                           39                             58
  CLUS_3                           29                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20P12.1) MUTATED       45     63     44
  AMP PEAK 21(20P12.1) WILD-TYPE     40     81     81
D21V5, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                           45                             40
  CLUS_2                           63                             81
  CLUS_3                           44                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(20P12.1) MUTATED       25     14     13     12     22     33
  AMP PEAK 21(20P12.1) WILD-TYPE     26     19     22     27     20     53
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 21(20P12.1) MUTATED        9     10     14
  AMP PEAK 21(20P12.1) WILD-TYPE     13     10     12
D21V6, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                           25                             26
  CLUS_2                           14                             19
  CLUS_3                           13                             22
  CLUS_4                           12                             27
  CLUS_5                           22                             20
  CLUS_6                           33                             53
  CLUS_7                            9                             13
  CLUS_8                           10                             10
  CLUS_9                           14                             12
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20P12.1) MUTATED       62     38     37     69
  AMP PEAK 21(20P12.1) WILD-TYPE     59     69     53     61
D21V7, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                           62                             59
  CLUS_2                           38                             69
  CLUS_3                           37                             53
  CLUS_4                           69                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20P12.1) MUTATED       39     55     29     77      6
  AMP PEAK 21(20P12.1) WILD-TYPE     40     53     67     52     30
D21V8, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                           39                             40
  CLUS_2                           55                             53
  CLUS_3                           29                             67
  CLUS_4                           77                             52
  CLUS_5                            6                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20P12.1) MUTATED       70     26     87
  AMP PEAK 21(20P12.1) WILD-TYPE     90     39     85
D21V9, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                           70                             90
  CLUS_2                           26                             39
  CLUS_3                           87                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20P12.1) MUTATED       57     21     42     63
  AMP PEAK 21(20P12.1) WILD-TYPE     78     29     35     72
D21V10, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                           57                             78
  CLUS_2                           21                             29
  CLUS_3                           42                             35
  CLUS_4                           63                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20P12.1) MUTATED       16     15      8
  AMP PEAK 21(20P12.1) WILD-TYPE     13     17     16
D21V11, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                           16                             13
  CLUS_2                           15                             17
  CLUS_3                            8                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20P12.1) MUTATED        8     11      6     10      4
  AMP PEAK 21(20P12.1) WILD-TYPE      4     11     11     14      6
D21V12, multiclass
        clus
vv       AMP PEAK 21(20P12.1) MUTATED AMP PEAK 21(20P12.1) WILD-TYPE
  CLUS_1                            8                              4
  CLUS_2                           11                             11
  CLUS_3                            6                             11
  CLUS_4                           10                             14
  CLUS_5                            4                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20P11.21) MUTATED       12     41     13     16
  AMP PEAK 22(20P11.21) WILD-TYPE     23     20     16      5
D22V1, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            12                              23
  CLUS_2                            41                              20
  CLUS_3                            13                              16
  CLUS_4                            16                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.21) MUTATED       11     48     23
  AMP PEAK 22(20P11.21) WILD-TYPE     31     24      9
D22V2, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            11                              31
  CLUS_2                            48                              24
  CLUS_3                            23                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.21) MUTATED       69    138     45
  AMP PEAK 22(20P11.21) WILD-TYPE    133     32     33
D22V3, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            69                             133
  CLUS_2                           138                              32
  CLUS_3                            45                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.21) MUTATED       89     44     33
  AMP PEAK 22(20P11.21) WILD-TYPE     31     53     43
D22V4, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            89                              31
  CLUS_2                            44                              53
  CLUS_3                            33                              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.21) MUTATED       56     81     55
  AMP PEAK 22(20P11.21) WILD-TYPE     29     63     70
D22V5, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            56                              29
  CLUS_2                            81                              63
  CLUS_3                            55                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20P11.21) MUTATED       34     15     19     19     28     38
  AMP PEAK 22(20P11.21) WILD-TYPE     17     18     16     20     14     48
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 22(20P11.21) MUTATED        9     13     17
  AMP PEAK 22(20P11.21) WILD-TYPE     13      7      9
D22V6, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            34                              17
  CLUS_2                            15                              18
  CLUS_3                            19                              16
  CLUS_4                            19                              20
  CLUS_5                            28                              14
  CLUS_6                            38                              48
  CLUS_7                             9                              13
  CLUS_8                            13                               7
  CLUS_9                            17                               9
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20P11.21) MUTATED       91     38     47     74
  AMP PEAK 22(20P11.21) WILD-TYPE     30     69     43     56
D22V7, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            91                              30
  CLUS_2                            38                              69
  CLUS_3                            47                              43
  CLUS_4                            74                              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20P11.21) MUTATED       51     75     31     87      6
  AMP PEAK 22(20P11.21) WILD-TYPE     28     33     65     42     30
D22V8, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            51                              28
  CLUS_2                            75                              33
  CLUS_3                            31                              65
  CLUS_4                            87                              42
  CLUS_5                             6                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.21) MUTATED       96     30     96
  AMP PEAK 22(20P11.21) WILD-TYPE     64     35     76
D22V9, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            96                              64
  CLUS_2                            30                              35
  CLUS_3                            96                              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20P11.21) MUTATED       74     25     54     69
  AMP PEAK 22(20P11.21) WILD-TYPE     61     25     23     66
D22V10, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            74                              61
  CLUS_2                            25                              25
  CLUS_3                            54                              23
  CLUS_4                            69                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.21) MUTATED       18     20     16
  AMP PEAK 22(20P11.21) WILD-TYPE     11     12      8
D22V11, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            18                              11
  CLUS_2                            20                              12
  CLUS_3                            16                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20P11.21) MUTATED       11     14     13     11      5
  AMP PEAK 22(20P11.21) WILD-TYPE      1      8      4     13      5
D22V12, multiclass
        clus
vv       AMP PEAK 22(20P11.21) MUTATED AMP PEAK 22(20P11.21) WILD-TYPE
  CLUS_1                            11                               1
  CLUS_2                            14                               8
  CLUS_3                            13                               4
  CLUS_4                            11                              13
  CLUS_5                             5                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q11.21) MUTATED       13     58     16     18
  AMP PEAK 23(20Q11.21) WILD-TYPE     22      3     13      3
D23V1, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            13                              22
  CLUS_2                            58                               3
  CLUS_3                            16                              13
  CLUS_4                            18                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q11.21) MUTATED       12     62     31
  AMP PEAK 23(20Q11.21) WILD-TYPE     30     10      1
D23V2, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            12                              30
  CLUS_2                            62                              10
  CLUS_3                            31                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q11.21) MUTATED       89    170     64
  AMP PEAK 23(20Q11.21) WILD-TYPE    113      0     14
D23V3, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            89                             113
  CLUS_2                           170                               0
  CLUS_3                            64                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q11.21) MUTATED      117     50     45
  AMP PEAK 23(20Q11.21) WILD-TYPE      3     47     31
D23V4, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                           117                               3
  CLUS_2                            50                              47
  CLUS_3                            45                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q11.21) MUTATED       67    107     76
  AMP PEAK 23(20Q11.21) WILD-TYPE     18     37     49
D23V5, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            67                              18
  CLUS_2                           107                              37
  CLUS_3                            76                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20Q11.21) MUTATED       46     20     29     25     31     49
  AMP PEAK 23(20Q11.21) WILD-TYPE      5     13      6     14     11     37
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 23(20Q11.21) MUTATED       11     16     23
  AMP PEAK 23(20Q11.21) WILD-TYPE     11      4      3
D23V6, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            46                               5
  CLUS_2                            20                              13
  CLUS_3                            29                               6
  CLUS_4                            25                              14
  CLUS_5                            31                              11
  CLUS_6                            49                              37
  CLUS_7                            11                              11
  CLUS_8                            16                               4
  CLUS_9                            23                               3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q11.21) MUTATED      117     46     64     94
  AMP PEAK 23(20Q11.21) WILD-TYPE      4     61     26     36
D23V7, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                           117                               4
  CLUS_2                            46                              61
  CLUS_3                            64                              26
  CLUS_4                            94                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(20Q11.21) MUTATED       73     96     34    111      7
  AMP PEAK 23(20Q11.21) WILD-TYPE      6     12     62     18     29
D23V8, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            73                               6
  CLUS_2                            96                              12
  CLUS_3                            34                              62
  CLUS_4                           111                              18
  CLUS_5                             7                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q11.21) MUTATED      117     45    122
  AMP PEAK 23(20Q11.21) WILD-TYPE     43     20     50
D23V9, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                           117                              43
  CLUS_2                            45                              20
  CLUS_3                           122                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q11.21) MUTATED       92     36     68     88
  AMP PEAK 23(20Q11.21) WILD-TYPE     43     14      9     47
D23V10, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            92                              43
  CLUS_2                            36                              14
  CLUS_3                            68                               9
  CLUS_4                            88                              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q11.21) MUTATED       22     25     19
  AMP PEAK 23(20Q11.21) WILD-TYPE      7      7      5
D23V11, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            22                               7
  CLUS_2                            25                               7
  CLUS_3                            19                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(20Q11.21) MUTATED       12     19     14     12      9
  AMP PEAK 23(20Q11.21) WILD-TYPE      0      3      3     12      1
D23V12, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            12                               0
  CLUS_2                            19                               3
  CLUS_3                            14                               3
  CLUS_4                            12                              12
  CLUS_5                             9                               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(20Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q12) MUTATED       12     58     15     18
  AMP PEAK 24(20Q12) WILD-TYPE     23      3     14      3
D24V1, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                         12                           23
  CLUS_2                         58                            3
  CLUS_3                         15                           14
  CLUS_4                         18                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q12) MUTATED       11     61     31
  AMP PEAK 24(20Q12) WILD-TYPE     31     11      1
D24V2, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                         11                           31
  CLUS_2                         61                           11
  CLUS_3                         31                            1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q12) MUTATED       88    170     66
  AMP PEAK 24(20Q12) WILD-TYPE    114      0     12
D24V3, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                         88                          114
  CLUS_2                        170                            0
  CLUS_3                         66                           12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q12) MUTATED      117     52     46
  AMP PEAK 24(20Q12) WILD-TYPE      3     45     30
D24V4, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                        117                            3
  CLUS_2                         52                           45
  CLUS_3                         46                           30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q12) MUTATED       66    108     77
  AMP PEAK 24(20Q12) WILD-TYPE     19     36     48
D24V5, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                         66                           19
  CLUS_2                        108                           36
  CLUS_3                         77                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 24(20Q12) MUTATED       46     19     29     27     31     49     11
  AMP PEAK 24(20Q12) WILD-TYPE      5     14      6     12     11     37     11
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 24(20Q12) MUTATED       16     23
  AMP PEAK 24(20Q12) WILD-TYPE      4      3
D24V6, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                         46                            5
  CLUS_2                         19                           14
  CLUS_3                         29                            6
  CLUS_4                         27                           12
  CLUS_5                         31                           11
  CLUS_6                         49                           37
  CLUS_7                         11                           11
  CLUS_8                         16                            4
  CLUS_9                         23                            3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q12) MUTATED      117     47     66     92
  AMP PEAK 24(20Q12) WILD-TYPE      4     60     24     38
D24V7, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                        117                            4
  CLUS_2                         47                           60
  CLUS_3                         66                           24
  CLUS_4                         92                           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(20Q12) MUTATED       74     96     36    110      6
  AMP PEAK 24(20Q12) WILD-TYPE      5     12     60     19     30
D24V8, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                         74                            5
  CLUS_2                         96                           12
  CLUS_3                         36                           60
  CLUS_4                        110                           19
  CLUS_5                          6                           30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q12) MUTATED      118     46    121
  AMP PEAK 24(20Q12) WILD-TYPE     42     19     51
D24V9, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                        118                           42
  CLUS_2                         46                           19
  CLUS_3                        121                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q12) MUTATED       92     37     68     88
  AMP PEAK 24(20Q12) WILD-TYPE     43     13      9     47
D24V10, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                         92                           43
  CLUS_2                         37                           13
  CLUS_3                         68                            9
  CLUS_4                         88                           47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q12) MUTATED       23     26     19
  AMP PEAK 24(20Q12) WILD-TYPE      6      6      5
D24V11, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                         23                            6
  CLUS_2                         26                            6
  CLUS_3                         19                            5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(20Q12) MUTATED       12     20     14     13      9
  AMP PEAK 24(20Q12) WILD-TYPE      0      2      3     11      1
D24V12, multiclass
        clus
vv       AMP PEAK 24(20Q12) MUTATED AMP PEAK 24(20Q12) WILD-TYPE
  CLUS_1                         12                            0
  CLUS_2                         20                            2
  CLUS_3                         14                            3
  CLUS_4                         13                           11
  CLUS_5                          9                            1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(20Q13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q13.12) MUTATED       13     58     16     18
  AMP PEAK 25(20Q13.12) WILD-TYPE     22      3     13      3
D25V1, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                            13                              22
  CLUS_2                            58                               3
  CLUS_3                            16                              13
  CLUS_4                            18                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q13.12) MUTATED       12     62     31
  AMP PEAK 25(20Q13.12) WILD-TYPE     30     10      1
D25V2, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                            12                              30
  CLUS_2                            62                              10
  CLUS_3                            31                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q13.12) MUTATED       88    170     68
  AMP PEAK 25(20Q13.12) WILD-TYPE    114      0     10
D25V3, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                            88                             114
  CLUS_2                           170                               0
  CLUS_3                            68                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q13.12) MUTATED      117     52     46
  AMP PEAK 25(20Q13.12) WILD-TYPE      3     45     30
D25V4, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                           117                               3
  CLUS_2                            52                              45
  CLUS_3                            46                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q13.12) MUTATED       66    110     77
  AMP PEAK 25(20Q13.12) WILD-TYPE     19     34     48
D25V5, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                            66                              19
  CLUS_2                           110                              34
  CLUS_3                            77                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(20Q13.12) MUTATED       46     19     29     28     32     49
  AMP PEAK 25(20Q13.12) WILD-TYPE      5     14      6     11     10     37
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 25(20Q13.12) MUTATED       11     16     23
  AMP PEAK 25(20Q13.12) WILD-TYPE     11      4      3
D25V6, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                            46                               5
  CLUS_2                            19                              14
  CLUS_3                            29                               6
  CLUS_4                            28                              11
  CLUS_5                            32                              10
  CLUS_6                            49                              37
  CLUS_7                            11                              11
  CLUS_8                            16                               4
  CLUS_9                            23                               3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q13.12) MUTATED      117     48     66     93
  AMP PEAK 25(20Q13.12) WILD-TYPE      4     59     24     37
D25V7, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                           117                               4
  CLUS_2                            48                              59
  CLUS_3                            66                              24
  CLUS_4                            93                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(20Q13.12) MUTATED       74     96     36    111      7
  AMP PEAK 25(20Q13.12) WILD-TYPE      5     12     60     18     29
D25V8, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                            74                               5
  CLUS_2                            96                              12
  CLUS_3                            36                              60
  CLUS_4                           111                              18
  CLUS_5                             7                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q13.12) MUTATED      119     46    123
  AMP PEAK 25(20Q13.12) WILD-TYPE     41     19     49
D25V9, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                           119                              41
  CLUS_2                            46                              19
  CLUS_3                           123                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q13.12) MUTATED       93     37     68     90
  AMP PEAK 25(20Q13.12) WILD-TYPE     42     13      9     45
D25V10, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                            93                              42
  CLUS_2                            37                              13
  CLUS_3                            68                               9
  CLUS_4                            90                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q13.12) MUTATED       23     26     19
  AMP PEAK 25(20Q13.12) WILD-TYPE      6      6      5
D25V11, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                            23                               6
  CLUS_2                            26                               6
  CLUS_3                            19                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(20Q13.12) MUTATED       12     20     14     13      9
  AMP PEAK 25(20Q13.12) WILD-TYPE      0      2      3     11      1
D25V12, multiclass
        clus
vv       AMP PEAK 25(20Q13.12) MUTATED AMP PEAK 25(20Q13.12) WILD-TYPE
  CLUS_1                            12                               0
  CLUS_2                            20                               2
  CLUS_3                            14                               3
  CLUS_4                            13                              11
  CLUS_5                             9                               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED        9     36      4     10
  DEL PEAK  1(1P36.11) WILD-TYPE     26     25     25     11
D26V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            9                             26
  CLUS_2                           36                             25
  CLUS_3                            4                             25
  CLUS_4                           10                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED        9     33     17
  DEL PEAK  1(1P36.11) WILD-TYPE     33     39     15
D26V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                           33                             39
  CLUS_3                           17                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       43    101     24
  DEL PEAK  1(1P36.11) WILD-TYPE    159     69     54
D26V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           43                            159
  CLUS_2                          101                             69
  CLUS_3                           24                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       64     21     22
  DEL PEAK  1(1P36.11) WILD-TYPE     56     76     54
D26V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           64                             56
  CLUS_2                           21                             76
  CLUS_3                           22                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       30     62     38
  DEL PEAK  1(1P36.11) WILD-TYPE     55     82     87
D26V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           30                             55
  CLUS_2                           62                             82
  CLUS_3                           38                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       22     12     15     15     19     17
  DEL PEAK  1(1P36.11) WILD-TYPE     29     21     20     24     23     69
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.11) MUTATED        8     10     12
  DEL PEAK  1(1P36.11) WILD-TYPE     14     10     14
D26V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           22                             29
  CLUS_2                           12                             21
  CLUS_3                           15                             20
  CLUS_4                           15                             24
  CLUS_5                           19                             23
  CLUS_6                           17                             69
  CLUS_7                            8                             14
  CLUS_8                           10                             10
  CLUS_9                           12                             14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       64     17     34     52
  DEL PEAK  1(1P36.11) WILD-TYPE     57     90     56     78
D26V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           64                             57
  CLUS_2                           17                             90
  CLUS_3                           34                             56
  CLUS_4                           52                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       42     48     12     61      4
  DEL PEAK  1(1P36.11) WILD-TYPE     37     60     84     68     32
D26V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           42                             37
  CLUS_2                           48                             60
  CLUS_3                           12                             84
  CLUS_4                           61                             68
  CLUS_5                            4                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       57     23     69
  DEL PEAK  1(1P36.11) WILD-TYPE    103     42    103
D26V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           57                            103
  CLUS_2                           23                             42
  CLUS_3                           69                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       45     17     41     46
  DEL PEAK  1(1P36.11) WILD-TYPE     90     33     36     89
D26V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           45                             90
  CLUS_2                           17                             33
  CLUS_3                           41                             36
  CLUS_4                           46                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       11     12      8
  DEL PEAK  1(1P36.11) WILD-TYPE     18     20     16
D26V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                           12                             20
  CLUS_3                            8                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED        4     11      3      8      5
  DEL PEAK  1(1P36.11) WILD-TYPE      8     11     14     16      5
D26V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                           11                             11
  CLUS_3                            3                             14
  CLUS_4                            8                             16
  CLUS_5                            5                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  2(1P33) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       10     23      2      5
  DEL PEAK  2(1P33) WILD-TYPE     25     38     27     16
D27V1, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        10                          25
  CLUS_2                        23                          38
  CLUS_3                         2                          27
  CLUS_4                         5                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED        9     21     10
  DEL PEAK  2(1P33) WILD-TYPE     33     51     22
D27V2, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         9                          33
  CLUS_2                        21                          51
  CLUS_3                        10                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       33     80     10
  DEL PEAK  2(1P33) WILD-TYPE    169     90     68
D27V3, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        33                         169
  CLUS_2                        80                          90
  CLUS_3                        10                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       49     15     17
  DEL PEAK  2(1P33) WILD-TYPE     71     82     59
D27V4, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        49                          71
  CLUS_2                        15                          82
  CLUS_3                        17                          59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       19     45     35
  DEL PEAK  2(1P33) WILD-TYPE     66     99     90
D27V5, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        19                          66
  CLUS_2                        45                          99
  CLUS_3                        35                          90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED       18      7     11     10     15     15      7
  DEL PEAK  2(1P33) WILD-TYPE     33     26     24     29     27     71     15
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  2(1P33) MUTATED        7      9
  DEL PEAK  2(1P33) WILD-TYPE     13     17
D27V6, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        18                          33
  CLUS_2                         7                          26
  CLUS_3                        11                          24
  CLUS_4                        10                          29
  CLUS_5                        15                          27
  CLUS_6                        15                          71
  CLUS_7                         7                          15
  CLUS_8                         7                          13
  CLUS_9                         9                          17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       46     14     24     38
  DEL PEAK  2(1P33) WILD-TYPE     75     93     66     92
D27V7, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        46                          75
  CLUS_2                        14                          93
  CLUS_3                        24                          66
  CLUS_4                        38                          92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED       34     33     10     39      6
  DEL PEAK  2(1P33) WILD-TYPE     45     75     86     90     30
D27V8, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        34                          45
  CLUS_2                        33                          75
  CLUS_3                        10                          86
  CLUS_4                        39                          90
  CLUS_5                         6                          30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       41     20     46
  DEL PEAK  2(1P33) WILD-TYPE    119     45    126
D27V9, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        41                         119
  CLUS_2                        20                          45
  CLUS_3                        46                         126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       33     12     29     33
  DEL PEAK  2(1P33) WILD-TYPE    102     38     48    102
D27V10, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        33                         102
  CLUS_2                        12                          38
  CLUS_3                        29                          48
  CLUS_4                        33                         102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED        9     10      8
  DEL PEAK  2(1P33) WILD-TYPE     20     22     16
D27V11, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         9                          20
  CLUS_2                        10                          22
  CLUS_3                         8                          16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED        6      8      3      6      4
  DEL PEAK  2(1P33) WILD-TYPE      6     14     14     18      6
D27V12, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         6                           6
  CLUS_2                         8                          14
  CLUS_3                         3                          14
  CLUS_4                         6                          18
  CLUS_5                         4                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  3(1P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.1) MUTATED        9     21      3      4
  DEL PEAK  3(1P13.1) WILD-TYPE     26     40     26     17
D28V1, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           9                            26
  CLUS_2                          21                            40
  CLUS_3                           3                            26
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED        8     20      9
  DEL PEAK  3(1P13.1) WILD-TYPE     34     52     23
D28V2, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          20                            52
  CLUS_3                           9                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED       36     76      7
  DEL PEAK  3(1P13.1) WILD-TYPE    166     94     71
D28V3, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          36                           166
  CLUS_2                          76                            94
  CLUS_3                           7                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED       46     17     16
  DEL PEAK  3(1P13.1) WILD-TYPE     74     80     60
D28V4, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          46                            74
  CLUS_2                          17                            80
  CLUS_3                          16                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED       19     45     31
  DEL PEAK  3(1P13.1) WILD-TYPE     66     99     94
D28V5, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          19                            66
  CLUS_2                          45                            99
  CLUS_3                          31                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.1) MUTATED       17      6     13     11     11     16
  DEL PEAK  3(1P13.1) WILD-TYPE     34     27     22     28     31     70
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  3(1P13.1) MUTATED        5      8      8
  DEL PEAK  3(1P13.1) WILD-TYPE     17     12     18
D28V6, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          17                            34
  CLUS_2                           6                            27
  CLUS_3                          13                            22
  CLUS_4                          11                            28
  CLUS_5                          11                            31
  CLUS_6                          16                            70
  CLUS_7                           5                            17
  CLUS_8                           8                            12
  CLUS_9                           8                            18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.1) MUTATED       43     12     24     39
  DEL PEAK  3(1P13.1) WILD-TYPE     78     95     66     91
D28V7, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          43                            78
  CLUS_2                          12                            95
  CLUS_3                          24                            66
  CLUS_4                          39                            91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.1) MUTATED       31     31     12     40      4
  DEL PEAK  3(1P13.1) WILD-TYPE     48     77     84     89     32
D28V8, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          31                            48
  CLUS_2                          31                            77
  CLUS_3                          12                            84
  CLUS_4                          40                            89
  CLUS_5                           4                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED       38     18     45
  DEL PEAK  3(1P13.1) WILD-TYPE    122     47    127
D28V9, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          38                           122
  CLUS_2                          18                            47
  CLUS_3                          45                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.1) MUTATED       30     10     27     34
  DEL PEAK  3(1P13.1) WILD-TYPE    105     40     50    101
D28V10, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          30                           105
  CLUS_2                          10                            40
  CLUS_3                          27                            50
  CLUS_4                          34                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED        8      8      7
  DEL PEAK  3(1P13.1) WILD-TYPE     21     24     17
D28V11, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           8                            21
  CLUS_2                           8                            24
  CLUS_3                           7                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.1) MUTATED        4      8      3      5      3
  DEL PEAK  3(1P13.1) WILD-TYPE      8     14     14     19      7
D28V12, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           4                             8
  CLUS_2                           8                            14
  CLUS_3                           3                            14
  CLUS_4                           5                            19
  CLUS_5                           3                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  4(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q43) MUTATED        2     10      0      2
  DEL PEAK  4(1Q43) WILD-TYPE     33     51     29     19
D29V1, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                         2                          33
  CLUS_2                        10                          51
  CLUS_3                         0                          29
  CLUS_4                         2                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q43) MUTATED        2      8      4
  DEL PEAK  4(1Q43) WILD-TYPE     40     64     28
D29V2, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                         2                          40
  CLUS_2                         8                          64
  CLUS_3                         4                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q43) MUTATED        9     35     10
  DEL PEAK  4(1Q43) WILD-TYPE    193    135     68
D29V3, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                         9                         193
  CLUS_2                        35                         135
  CLUS_3                        10                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q43) MUTATED       25      5      9
  DEL PEAK  4(1Q43) WILD-TYPE     95     92     67
D29V4, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        25                          95
  CLUS_2                         5                          92
  CLUS_3                         9                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q43) MUTATED       10     13     17
  DEL PEAK  4(1Q43) WILD-TYPE     75    131    108
D29V5, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        10                          75
  CLUS_2                        13                         131
  CLUS_3                        17                         108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(1Q43) MUTATED        8      1      6      4      5      6      4
  DEL PEAK  4(1Q43) WILD-TYPE     43     32     29     35     37     80     18
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  4(1Q43) MUTATED        2      4
  DEL PEAK  4(1Q43) WILD-TYPE     18     22
D29V6, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                         8                          43
  CLUS_2                         1                          32
  CLUS_3                         6                          29
  CLUS_4                         4                          35
  CLUS_5                         5                          37
  CLUS_6                         6                          80
  CLUS_7                         4                          18
  CLUS_8                         2                          18
  CLUS_9                         4                          22
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q43) MUTATED       23      2     15     13
  DEL PEAK  4(1Q43) WILD-TYPE     98    105     75    117
D29V7, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        23                          98
  CLUS_2                         2                         105
  CLUS_3                        15                          75
  CLUS_4                        13                         117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q43) MUTATED       18     17      3     14      1
  DEL PEAK  4(1Q43) WILD-TYPE     61     91     93    115     35
D29V8, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        18                          61
  CLUS_2                        17                          91
  CLUS_3                         3                          93
  CLUS_4                        14                         115
  CLUS_5                         1                          35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q43) MUTATED       22     11     15
  DEL PEAK  4(1Q43) WILD-TYPE    138     54    157
D29V9, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        22                         138
  CLUS_2                        11                          54
  CLUS_3                        15                         157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q43) MUTATED       16      9     17      6
  DEL PEAK  4(1Q43) WILD-TYPE    119     41     60    129
D29V10, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        16                         119
  CLUS_2                         9                          41
  CLUS_3                        17                          60
  CLUS_4                         6                         129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q43) MUTATED        9      2      6
  DEL PEAK  4(1Q43) WILD-TYPE     20     30     18
D29V11, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                         9                          20
  CLUS_2                         2                          30
  CLUS_3                         6                          18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q43) MUTATED        3      4      4      4      2
  DEL PEAK  4(1Q43) WILD-TYPE      9     18     13     20      8
D29V12, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                         3                           9
  CLUS_2                         4                          18
  CLUS_3                         4                          13
  CLUS_4                         4                          20
  CLUS_5                         2                           8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  5(2P21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        1      4      0      1
  DEL PEAK  5(2P21) WILD-TYPE     34     57     29     20
D30V1, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         1                          34
  CLUS_2                         4                          57
  CLUS_3                         0                          29
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        1      4      1
  DEL PEAK  5(2P21) WILD-TYPE     41     68     31
D30V2, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         1                          41
  CLUS_2                         4                          68
  CLUS_3                         1                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        8      7      2
  DEL PEAK  5(2P21) WILD-TYPE    194    163     76
D30V3, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         8                         194
  CLUS_2                         7                         163
  CLUS_3                         2                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        5      3      2
  DEL PEAK  5(2P21) WILD-TYPE    115     94     74
D30V4, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         5                         115
  CLUS_2                         3                          94
  CLUS_3                         2                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        4      3      5
  DEL PEAK  5(2P21) WILD-TYPE     81    141    120
D30V5, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         4                          81
  CLUS_2                         3                         141
  CLUS_3                         5                         120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  5(2P21) MUTATED        1      2      1      2      2      2      0
  DEL PEAK  5(2P21) WILD-TYPE     50     31     34     37     40     84     22
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  5(2P21) MUTATED        0      2
  DEL PEAK  5(2P21) WILD-TYPE     20     24
D30V6, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         1                          50
  CLUS_2                         2                          31
  CLUS_3                         1                          34
  CLUS_4                         2                          37
  CLUS_5                         2                          40
  CLUS_6                         2                          84
  CLUS_7                         0                          22
  CLUS_8                         0                          20
  CLUS_9                         2                          24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        3      2      5      7
  DEL PEAK  5(2P21) WILD-TYPE    118    105     85    123
D30V7, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         3                         118
  CLUS_2                         2                         105
  CLUS_3                         5                          85
  CLUS_4                         7                         123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2P21) MUTATED        3      3      2      9      0
  DEL PEAK  5(2P21) WILD-TYPE     76    105     94    120     36
D30V8, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         3                          76
  CLUS_2                         3                         105
  CLUS_3                         2                          94
  CLUS_4                         9                         120
  CLUS_5                         0                          36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        2      3      9
  DEL PEAK  5(2P21) WILD-TYPE    158     62    163
D30V9, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         2                         158
  CLUS_2                         3                          62
  CLUS_3                         9                         163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        2      2      3      7
  DEL PEAK  5(2P21) WILD-TYPE    133     48     74    128
D30V10, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         2                         133
  CLUS_2                         2                          48
  CLUS_3                         3                          74
  CLUS_4                         7                         128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        1      1      0
  DEL PEAK  5(2P21) WILD-TYPE     28     31     24
D30V11, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  5(2P21) MUTATED"
clus
  DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE 
                          2                          83 
                 TCGA-A6-2675                  TCGA-A6-5657 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-5667                  TCGA-A6-6137 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6138                  TCGA-A6-6140 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6141                  TCGA-A6-6142 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6649                  TCGA-A6-6650 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6651                  TCGA-A6-6653 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6654                  TCGA-A6-6781 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6782                  TCGA-AA-3489 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AD-5900                  TCGA-AD-6548 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AD-6889                  TCGA-AD-6901 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AD-6963                  TCGA-AD-6964 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AD-6965                  TCGA-AY-6196 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AZ-4323                  TCGA-AZ-4616 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AZ-5403                  TCGA-AZ-6598 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AZ-6600                  TCGA-AZ-6601 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AZ-6603                  TCGA-AZ-6605 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AZ-6607                  TCGA-CA-6718 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CA-6719                  TCGA-CK-5916 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CK-6748                  TCGA-CM-4751 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CM-5860                  TCGA-CM-6167 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CM-6674                  TCGA-CM-6676 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CM-6677                  TCGA-CM-6678 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CM-6679                  TCGA-CM-6680 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-D5-5537                  TCGA-D5-6533 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-D5-6536                  TCGA-D5-6922 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-D5-6924                  TCGA-DM-A0XD 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A0XF                  TCGA-DM-A1D0 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A1D7                  TCGA-DM-A1D8 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A1D9                  TCGA-DM-A1DA 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A1HA                  TCGA-DM-A280 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A282                  TCGA-DM-A285 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A28F                  TCGA-F4-6459 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-F4-6460                  TCGA-F4-6569 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-F4-6570                  TCGA-F4-6704 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-F4-6805                  TCGA-F4-6807 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-F4-6808                  TCGA-F4-6809 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6294                  TCGA-G4-6295 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6299                  TCGA-G4-6302 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6303                  TCGA-G4-6306 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6309                  TCGA-G4-6314 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6625                  TCGA-G4-6627 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6628 
"DEL PEAK  5(2P21) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2P21) MUTATED        0      0      0      1      1
  DEL PEAK  5(2P21) WILD-TYPE     12     22     17     23      9
D30V12, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  5(2P21) MUTATED"
clus
  DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE 
                          2                          83 
                 TCGA-A6-2675                  TCGA-A6-5657 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-5667                  TCGA-A6-6137 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6138                  TCGA-A6-6140 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6141                  TCGA-A6-6142 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6649                  TCGA-A6-6650 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6651                  TCGA-A6-6653 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6654                  TCGA-A6-6781 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-A6-6782                  TCGA-AA-3489 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AD-5900                  TCGA-AD-6548 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AD-6889                  TCGA-AD-6901 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AD-6963                  TCGA-AD-6964 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AD-6965                  TCGA-AY-6196 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AZ-4323                  TCGA-AZ-4616 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AZ-5403                  TCGA-AZ-6598 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AZ-6600                  TCGA-AZ-6601 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AZ-6603                  TCGA-AZ-6605 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-AZ-6607                  TCGA-CA-6718 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CA-6719                  TCGA-CK-5916 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CK-6748                  TCGA-CM-4751 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CM-5860                  TCGA-CM-6167 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CM-6674                  TCGA-CM-6676 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CM-6677                  TCGA-CM-6678 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-CM-6679                  TCGA-CM-6680 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-D5-5537                  TCGA-D5-6533 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-D5-6536                  TCGA-D5-6922 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-D5-6924                  TCGA-DM-A0XD 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A0XF                  TCGA-DM-A1D0 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A1D7                  TCGA-DM-A1D8 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A1D9                  TCGA-DM-A1DA 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A1HA                  TCGA-DM-A280 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A282                  TCGA-DM-A285 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-DM-A28F                  TCGA-F4-6459 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-F4-6460                  TCGA-F4-6569 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-F4-6570                  TCGA-F4-6704 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-F4-6805                  TCGA-F4-6807 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-F4-6808                  TCGA-F4-6809 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6294                  TCGA-G4-6295 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6299                  TCGA-G4-6302 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6303                  TCGA-G4-6306 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6309                  TCGA-G4-6314 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6625                  TCGA-G4-6627 
"DEL PEAK  5(2P21) WILD-TYPE" "DEL PEAK  5(2P21) WILD-TYPE" 
                 TCGA-G4-6628 
"DEL PEAK  5(2P21) WILD-TYPE" 

Clustering(31) Variable = DEL PEAK  6(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q22.1) MUTATED        3      6      2      1
  DEL PEAK  6(2Q22.1) WILD-TYPE     32     55     27     20
D31V1, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           3                            32
  CLUS_2                           6                            55
  CLUS_3                           2                            27
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED        2      8      2
  DEL PEAK  6(2Q22.1) WILD-TYPE     40     64     30
D31V2, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           2                            40
  CLUS_2                           8                            64
  CLUS_3                           2                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED        8     12      4
  DEL PEAK  6(2Q22.1) WILD-TYPE    194    158     74
D31V3, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           8                           194
  CLUS_2                          12                           158
  CLUS_3                           4                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED        7      3      3
  DEL PEAK  6(2Q22.1) WILD-TYPE    113     94     73
D31V4, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           7                           113
  CLUS_2                           3                            94
  CLUS_3                           3                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED        4      7      6
  DEL PEAK  6(2Q22.1) WILD-TYPE     81    137    119
D31V5, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           4                            81
  CLUS_2                           7                           137
  CLUS_3                           6                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q22.1) MUTATED        5      0      2      2      3      2
  DEL PEAK  6(2Q22.1) WILD-TYPE     46     33     33     37     39     84
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(2Q22.1) MUTATED        1      0      2
  DEL PEAK  6(2Q22.1) WILD-TYPE     21     20     24
D31V6, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           5                            46
  CLUS_2                           0                            33
  CLUS_3                           2                            33
  CLUS_4                           2                            37
  CLUS_5                           3                            39
  CLUS_6                           2                            84
  CLUS_7                           1                            21
  CLUS_8                           0                            20
  CLUS_9                           2                            24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q22.1) MUTATED        7      3      3     11
  DEL PEAK  6(2Q22.1) WILD-TYPE    114    104     87    119
D31V7, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           7                           114
  CLUS_2                           3                           104
  CLUS_3                           3                            87
  CLUS_4                          11                           119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q22.1) MUTATED        3      4      4     12      1
  DEL PEAK  6(2Q22.1) WILD-TYPE     76    104     92    117     35
D31V8, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           3                            76
  CLUS_2                           4                           104
  CLUS_3                           4                            92
  CLUS_4                          12                           117
  CLUS_5                           1                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED        7      2     14
  DEL PEAK  6(2Q22.1) WILD-TYPE    153     63    158
D31V9, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           7                           153
  CLUS_2                           2                            63
  CLUS_3                          14                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q22.1) MUTATED        6      1      3     13
  DEL PEAK  6(2Q22.1) WILD-TYPE    129     49     74    122
D31V10, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           6                           129
  CLUS_2                           1                            49
  CLUS_3                           3                            74
  CLUS_4                          13                           122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED        1      2      1
  DEL PEAK  6(2Q22.1) WILD-TYPE     28     30     23
D31V11, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           1                            28
  CLUS_2                           2                            30
  CLUS_3                           1                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q22.1) MUTATED        0      1      1      1      1
  DEL PEAK  6(2Q22.1) WILD-TYPE     12     21     16     23      9
D31V12, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           0                            12
  CLUS_2                           1                            21
  CLUS_3                           1                            16
  CLUS_4                           1                            23
  CLUS_5                           1                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  7(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.2) MUTATED        6     15      2      3
  DEL PEAK  7(3P26.2) WILD-TYPE     29     46     27     18
D32V1, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                           6                            29
  CLUS_2                          15                            46
  CLUS_3                           2                            27
  CLUS_4                           3                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED        4     16      6
  DEL PEAK  7(3P26.2) WILD-TYPE     38     56     26
D32V2, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                           4                            38
  CLUS_2                          16                            56
  CLUS_3                           6                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED       21     41     10
  DEL PEAK  7(3P26.2) WILD-TYPE    181    129     68
D32V3, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          21                           181
  CLUS_2                          41                           129
  CLUS_3                          10                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED       24      9     14
  DEL PEAK  7(3P26.2) WILD-TYPE     96     88     62
D32V4, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          24                            96
  CLUS_2                           9                            88
  CLUS_3                          14                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED       12     23     20
  DEL PEAK  7(3P26.2) WILD-TYPE     73    121    105
D32V5, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          12                            73
  CLUS_2                          23                           121
  CLUS_3                          20                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P26.2) MUTATED       11      3      6      5     10     13
  DEL PEAK  7(3P26.2) WILD-TYPE     40     30     29     34     32     73
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  7(3P26.2) MUTATED        3      2      2
  DEL PEAK  7(3P26.2) WILD-TYPE     19     18     24
D32V6, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          11                            40
  CLUS_2                           3                            30
  CLUS_3                           6                            29
  CLUS_4                           5                            34
  CLUS_5                          10                            32
  CLUS_6                          13                            73
  CLUS_7                           3                            19
  CLUS_8                           2                            18
  CLUS_9                           2                            24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.2) MUTATED       23      7     14     28
  DEL PEAK  7(3P26.2) WILD-TYPE     98    100     76    102
D32V7, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          23                            98
  CLUS_2                           7                           100
  CLUS_3                          14                            76
  CLUS_4                          28                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.2) MUTATED       18     16      7     29      2
  DEL PEAK  7(3P26.2) WILD-TYPE     61     92     89    100     34
D32V8, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          18                            61
  CLUS_2                          16                            92
  CLUS_3                           7                            89
  CLUS_4                          29                           100
  CLUS_5                           2                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED       25      8     29
  DEL PEAK  7(3P26.2) WILD-TYPE    135     57    143
D32V9, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          25                           135
  CLUS_2                           8                            57
  CLUS_3                          29                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.2) MUTATED       18      8     14     22
  DEL PEAK  7(3P26.2) WILD-TYPE    117     42     63    113
D32V10, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          18                           117
  CLUS_2                           8                            42
  CLUS_3                          14                            63
  CLUS_4                          22                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED        5      9      4
  DEL PEAK  7(3P26.2) WILD-TYPE     24     23     20
D32V11, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                           5                            24
  CLUS_2                           9                            23
  CLUS_3                           4                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.2) MUTATED        4      5      1      6      2
  DEL PEAK  7(3P26.2) WILD-TYPE      8     17     16     18      8
D32V12, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                           4                             8
  CLUS_2                           5                            17
  CLUS_3                           1                            16
  CLUS_4                           6                            18
  CLUS_5                           2                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  8(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       10     14      4      4
  DEL PEAK  8(3P14.2) WILD-TYPE     25     47     25     17
D33V1, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          10                            25
  CLUS_2                          14                            47
  CLUS_3                           4                            25
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED        8     17      7
  DEL PEAK  8(3P14.2) WILD-TYPE     34     55     25
D33V2, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          17                            55
  CLUS_3                           7                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       33     41     14
  DEL PEAK  8(3P14.2) WILD-TYPE    169    129     64
D33V3, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          33                           169
  CLUS_2                          41                           129
  CLUS_3                          14                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       29     16     12
  DEL PEAK  8(3P14.2) WILD-TYPE     91     81     64
D33V4, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          29                            91
  CLUS_2                          16                            81
  CLUS_3                          12                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       13     24     27
  DEL PEAK  8(3P14.2) WILD-TYPE     72    120     98
D33V5, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          13                            72
  CLUS_2                          24                           120
  CLUS_3                          27                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P14.2) MUTATED       13      6      4      7     10     17
  DEL PEAK  8(3P14.2) WILD-TYPE     38     27     31     32     32     69
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(3P14.2) MUTATED        2      2      3
  DEL PEAK  8(3P14.2) WILD-TYPE     20     18     23
D33V6, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          13                            38
  CLUS_2                           6                            27
  CLUS_3                           4                            31
  CLUS_4                           7                            32
  CLUS_5                          10                            32
  CLUS_6                          17                            69
  CLUS_7                           2                            20
  CLUS_8                           2                            18
  CLUS_9                           3                            23
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       29     13     19     27
  DEL PEAK  8(3P14.2) WILD-TYPE     92     94     71    103
D33V7, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          29                            92
  CLUS_2                          13                            94
  CLUS_3                          19                            71
  CLUS_4                          27                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P14.2) MUTATED       19     25      9     29      6
  DEL PEAK  8(3P14.2) WILD-TYPE     60     83     87    100     30
D33V8, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          19                            60
  CLUS_2                          25                            83
  CLUS_3                           9                            87
  CLUS_4                          29                           100
  CLUS_5                           6                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       30      9     33
  DEL PEAK  8(3P14.2) WILD-TYPE    130     56    139
D33V9, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          30                           130
  CLUS_2                           9                            56
  CLUS_3                          33                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       23      7     17     25
  DEL PEAK  8(3P14.2) WILD-TYPE    112     43     60    110
D33V10, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          23                           112
  CLUS_2                           7                            43
  CLUS_3                          17                            60
  CLUS_4                          25                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED        2      8      6
  DEL PEAK  8(3P14.2) WILD-TYPE     27     24     18
D33V11, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                           2                            27
  CLUS_2                           8                            24
  CLUS_3                           6                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P14.2) MUTATED        3      6      2      4      1
  DEL PEAK  8(3P14.2) WILD-TYPE      9     16     15     20      9
D33V12, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                           3                             9
  CLUS_2                           6                            16
  CLUS_3                           2                            15
  CLUS_4                           4                            20
  CLUS_5                           1                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  9(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED        2      7      1      2
  DEL PEAK  9(3Q26.31) WILD-TYPE     33     54     28     19
D34V1, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                            7                             54
  CLUS_3                            1                             28
  CLUS_4                            2                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED        2      8      2
  DEL PEAK  9(3Q26.31) WILD-TYPE     40     64     30
D34V2, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            2                             40
  CLUS_2                            8                             64
  CLUS_3                            2                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED       17     23      6
  DEL PEAK  9(3Q26.31) WILD-TYPE    185    147     72
D34V3, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           17                            185
  CLUS_2                           23                            147
  CLUS_3                            6                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED       17      9      7
  DEL PEAK  9(3Q26.31) WILD-TYPE    103     88     69
D34V4, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           17                            103
  CLUS_2                            9                             88
  CLUS_3                            7                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED        6     18     13
  DEL PEAK  9(3Q26.31) WILD-TYPE     79    126    112
D34V5, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            6                             79
  CLUS_2                           18                            126
  CLUS_3                           13                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q26.31) MUTATED        5      4      4      6      5      9
  DEL PEAK  9(3Q26.31) WILD-TYPE     46     29     31     33     37     77
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(3Q26.31) MUTATED        1      2      1
  DEL PEAK  9(3Q26.31) WILD-TYPE     21     18     25
D34V6, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            5                             46
  CLUS_2                            4                             29
  CLUS_3                            4                             31
  CLUS_4                            6                             33
  CLUS_5                            5                             37
  CLUS_6                            9                             77
  CLUS_7                            1                             21
  CLUS_8                            2                             18
  CLUS_9                            1                             25
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED       19      6      8     13
  DEL PEAK  9(3Q26.31) WILD-TYPE    102    101     82    117
D34V7, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           19                            102
  CLUS_2                            6                            101
  CLUS_3                            8                             82
  CLUS_4                           13                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3Q26.31) MUTATED        9     17      5     13      2
  DEL PEAK  9(3Q26.31) WILD-TYPE     70     91     91    116     34
D34V8, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            9                             70
  CLUS_2                           17                             91
  CLUS_3                            5                             91
  CLUS_4                           13                            116
  CLUS_5                            2                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED       22      5     13
  DEL PEAK  9(3Q26.31) WILD-TYPE    138     60    159
D34V9, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           22                            138
  CLUS_2                            5                             60
  CLUS_3                           13                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED       13      4     10     13
  DEL PEAK  9(3Q26.31) WILD-TYPE    122     46     67    122
D34V10, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           13                            122
  CLUS_2                            4                             46
  CLUS_3                           10                             67
  CLUS_4                           13                            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED        2      2      6
  DEL PEAK  9(3Q26.31) WILD-TYPE     27     30     18
D34V11, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            2                             27
  CLUS_2                            2                             30
  CLUS_3                            6                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3Q26.31) MUTATED        2      1      3      3      1
  DEL PEAK  9(3Q26.31) WILD-TYPE     10     21     14     21      9
D34V12, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            1                             21
  CLUS_3                            3                             14
  CLUS_4                            3                             21
  CLUS_5                            1                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 10(4P16.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.2) MUTATED        7     29      3      9
  DEL PEAK 10(4P16.2) WILD-TYPE     28     32     26     12
D35V1, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                           7                            28
  CLUS_2                          29                            32
  CLUS_3                           3                            26
  CLUS_4                           9                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.2) MUTATED        7     23     18
  DEL PEAK 10(4P16.2) WILD-TYPE     35     49     14
D35V2, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          23                            49
  CLUS_3                          18                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.2) MUTATED       33     87     19
  DEL PEAK 10(4P16.2) WILD-TYPE    169     83     59
D35V3, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          33                           169
  CLUS_2                          87                            83
  CLUS_3                          19                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.2) MUTATED       48     19     21
  DEL PEAK 10(4P16.2) WILD-TYPE     72     78     55
D35V4, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          48                            72
  CLUS_2                          19                            78
  CLUS_3                          21                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.2) MUTATED       26     40     33
  DEL PEAK 10(4P16.2) WILD-TYPE     59    104     92
D35V5, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          26                            59
  CLUS_2                          40                           104
  CLUS_3                          33                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4P16.2) MUTATED       18      7     12     12     19     14
  DEL PEAK 10(4P16.2) WILD-TYPE     33     26     23     27     23     72
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 10(4P16.2) MUTATED        7      1      9
  DEL PEAK 10(4P16.2) WILD-TYPE     15     19     17
D35V6, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          18                            33
  CLUS_2                           7                            26
  CLUS_3                          12                            23
  CLUS_4                          12                            27
  CLUS_5                          19                            23
  CLUS_6                          14                            72
  CLUS_7                           7                            15
  CLUS_8                           1                            19
  CLUS_9                           9                            17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.2) MUTATED       52     13     30     43
  DEL PEAK 10(4P16.2) WILD-TYPE     69     94     60     87
D35V7, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          52                            69
  CLUS_2                          13                            94
  CLUS_3                          30                            60
  CLUS_4                          43                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4P16.2) MUTATED       36     38      8     52      4
  DEL PEAK 10(4P16.2) WILD-TYPE     43     70     88     77     32
D35V8, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          36                            43
  CLUS_2                          38                            70
  CLUS_3                           8                            88
  CLUS_4                          52                            77
  CLUS_5                           4                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.2) MUTATED       44     16     57
  DEL PEAK 10(4P16.2) WILD-TYPE    116     49    115
D35V9, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          44                           116
  CLUS_2                          16                            49
  CLUS_3                          57                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.2) MUTATED       37     11     24     45
  DEL PEAK 10(4P16.2) WILD-TYPE     98     39     53     90
D35V10, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          37                            98
  CLUS_2                          11                            39
  CLUS_3                          24                            53
  CLUS_4                          45                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.2) MUTATED       12      9      4
  DEL PEAK 10(4P16.2) WILD-TYPE     17     23     20
D35V11, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          12                            17
  CLUS_2                           9                            23
  CLUS_3                           4                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4P16.2) MUTATED        7      6      4      5      3
  DEL PEAK 10(4P16.2) WILD-TYPE      5     16     13     19      7
D35V12, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                           7                             5
  CLUS_2                           6                            16
  CLUS_3                           4                            13
  CLUS_4                           5                            19
  CLUS_5                           3                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 11(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED        9     27      2     11
  DEL PEAK 11(4Q22.1) WILD-TYPE     26     34     27     10
D36V1, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                           9                            26
  CLUS_2                          27                            34
  CLUS_3                           2                            27
  CLUS_4                          11                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED        7     25     17
  DEL PEAK 11(4Q22.1) WILD-TYPE     35     47     15
D36V2, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          25                            47
  CLUS_3                          17                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       35     96     20
  DEL PEAK 11(4Q22.1) WILD-TYPE    167     74     58
D36V3, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          35                           167
  CLUS_2                          96                            74
  CLUS_3                          20                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       55     21     25
  DEL PEAK 11(4Q22.1) WILD-TYPE     65     76     51
D36V4, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          55                            65
  CLUS_2                          21                            76
  CLUS_3                          25                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       28     48     36
  DEL PEAK 11(4Q22.1) WILD-TYPE     57     96     89
D36V5, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          28                            57
  CLUS_2                          48                            96
  CLUS_3                          36                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q22.1) MUTATED       19      6     13     13     18     23
  DEL PEAK 11(4Q22.1) WILD-TYPE     32     27     22     26     24     63
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 11(4Q22.1) MUTATED        6      5      9
  DEL PEAK 11(4Q22.1) WILD-TYPE     16     15     17
D36V6, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          19                            32
  CLUS_2                           6                            27
  CLUS_3                          13                            22
  CLUS_4                          13                            26
  CLUS_5                          18                            24
  CLUS_6                          23                            63
  CLUS_7                           6                            16
  CLUS_8                           5                            15
  CLUS_9                           9                            17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED       57     16     28     49
  DEL PEAK 11(4Q22.1) WILD-TYPE     64     91     62     81
D36V7, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          57                            64
  CLUS_2                          16                            91
  CLUS_3                          28                            62
  CLUS_4                          49                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q22.1) MUTATED       40     44      9     53      4
  DEL PEAK 11(4Q22.1) WILD-TYPE     39     64     87     76     32
D36V8, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          40                            39
  CLUS_2                          44                            64
  CLUS_3                           9                            87
  CLUS_4                          53                            76
  CLUS_5                           4                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       53     16     58
  DEL PEAK 11(4Q22.1) WILD-TYPE    107     49    114
D36V9, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          53                           107
  CLUS_2                          16                            49
  CLUS_3                          58                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED       38     12     31     46
  DEL PEAK 11(4Q22.1) WILD-TYPE     97     38     46     89
D36V10, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          38                            97
  CLUS_2                          12                            38
  CLUS_3                          31                            46
  CLUS_4                          46                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       14     11      7
  DEL PEAK 11(4Q22.1) WILD-TYPE     15     21     17
D36V11, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          14                            15
  CLUS_2                          11                            21
  CLUS_3                           7                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q22.1) MUTATED        7      8      7      5      5
  DEL PEAK 11(4Q22.1) WILD-TYPE      5     14     10     19      5
D36V12, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                           7                             5
  CLUS_2                           8                            14
  CLUS_3                           7                            10
  CLUS_4                           5                            19
  CLUS_5                           5                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 12(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED        8     30      4     11
  DEL PEAK 12(4Q35.1) WILD-TYPE     27     31     25     10
D37V1, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                           8                            27
  CLUS_2                          30                            31
  CLUS_3                           4                            25
  CLUS_4                          11                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED        8     28     17
  DEL PEAK 12(4Q35.1) WILD-TYPE     34     44     15
D37V2, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          28                            44
  CLUS_3                          17                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       36    101     22
  DEL PEAK 12(4Q35.1) WILD-TYPE    166     69     56
D37V3, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          36                           166
  CLUS_2                         101                            69
  CLUS_3                          22                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       59     17     26
  DEL PEAK 12(4Q35.1) WILD-TYPE     61     80     50
D37V4, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          59                            61
  CLUS_2                          17                            80
  CLUS_3                          26                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       31     48     42
  DEL PEAK 12(4Q35.1) WILD-TYPE     54     96     83
D37V5, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          31                            54
  CLUS_2                          48                            96
  CLUS_3                          42                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q35.1) MUTATED       20      7     15     14     17     23
  DEL PEAK 12(4Q35.1) WILD-TYPE     31     26     20     25     25     63
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 12(4Q35.1) MUTATED        8      5     12
  DEL PEAK 12(4Q35.1) WILD-TYPE     14     15     14
D37V6, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          20                            31
  CLUS_2                           7                            26
  CLUS_3                          15                            20
  CLUS_4                          14                            25
  CLUS_5                          17                            25
  CLUS_6                          23                            63
  CLUS_7                           8                            14
  CLUS_8                           5                            15
  CLUS_9                          12                            14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED       61     19     29     49
  DEL PEAK 12(4Q35.1) WILD-TYPE     60     88     61     81
D37V7, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          61                            60
  CLUS_2                          19                            88
  CLUS_3                          29                            61
  CLUS_4                          49                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q35.1) MUTATED       40     44     12     56      6
  DEL PEAK 12(4Q35.1) WILD-TYPE     39     64     84     73     30
D37V8, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          40                            39
  CLUS_2                          44                            64
  CLUS_3                          12                            84
  CLUS_4                          56                            73
  CLUS_5                           6                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       55     17     62
  DEL PEAK 12(4Q35.1) WILD-TYPE    105     48    110
D37V9, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          55                           105
  CLUS_2                          17                            48
  CLUS_3                          62                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED       39     16     30     49
  DEL PEAK 12(4Q35.1) WILD-TYPE     96     34     47     86
D37V10, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          39                            96
  CLUS_2                          16                            34
  CLUS_3                          30                            47
  CLUS_4                          49                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       14     12      8
  DEL PEAK 12(4Q35.1) WILD-TYPE     15     20     16
D37V11, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          14                            15
  CLUS_2                          12                            20
  CLUS_3                           8                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q35.1) MUTATED        5      9      7      8      5
  DEL PEAK 12(4Q35.1) WILD-TYPE      7     13     10     16      5
D37V12, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                           9                            13
  CLUS_3                           7                            10
  CLUS_4                           8                            16
  CLUS_5                           5                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 13(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q12.1) MUTATED        8     20      0      6
  DEL PEAK 13(5Q12.1) WILD-TYPE     27     41     29     15
D38V1, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                           8                            27
  CLUS_2                          20                            41
  CLUS_3                           0                            29
  CLUS_4                           6                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q12.1) MUTATED        7     12     15
  DEL PEAK 13(5Q12.1) WILD-TYPE     35     60     17
D38V2, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          12                            60
  CLUS_3                          15                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q12.1) MUTATED       19     63     24
  DEL PEAK 13(5Q12.1) WILD-TYPE    183    107     54
D38V3, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                          19                           183
  CLUS_2                          63                           107
  CLUS_3                          24                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q12.1) MUTATED       39     15     18
  DEL PEAK 13(5Q12.1) WILD-TYPE     81     82     58
D38V4, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                          39                            81
  CLUS_2                          15                            82
  CLUS_3                          18                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q12.1) MUTATED       28     27     23
  DEL PEAK 13(5Q12.1) WILD-TYPE     57    117    102
D38V5, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                          28                            57
  CLUS_2                          27                           117
  CLUS_3                          23                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q12.1) MUTATED       17      6      6      7     11     14
  DEL PEAK 13(5Q12.1) WILD-TYPE     34     27     29     32     31     72
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 13(5Q12.1) MUTATED        4      3     10
  DEL PEAK 13(5Q12.1) WILD-TYPE     18     17     16
D38V6, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                          17                            34
  CLUS_2                           6                            27
  CLUS_3                           6                            29
  CLUS_4                           7                            32
  CLUS_5                          11                            31
  CLUS_6                          14                            72
  CLUS_7                           4                            18
  CLUS_8                           3                            17
  CLUS_9                          10                            16
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q12.1) MUTATED       41      9     23     33
  DEL PEAK 13(5Q12.1) WILD-TYPE     80     98     67     97
D38V7, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                          41                            80
  CLUS_2                           9                            98
  CLUS_3                          23                            67
  CLUS_4                          33                            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(5Q12.1) MUTATED       29     29      9     35      4
  DEL PEAK 13(5Q12.1) WILD-TYPE     50     79     87     94     32
D38V8, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                          29                            50
  CLUS_2                          29                            79
  CLUS_3                           9                            87
  CLUS_4                          35                            94
  CLUS_5                           4                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q12.1) MUTATED       33     15     42
  DEL PEAK 13(5Q12.1) WILD-TYPE    127     50    130
D38V9, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                          33                           127
  CLUS_2                          15                            50
  CLUS_3                          42                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q12.1) MUTATED       26     14     17     33
  DEL PEAK 13(5Q12.1) WILD-TYPE    109     36     60    102
D38V10, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                          26                           109
  CLUS_2                          14                            36
  CLUS_3                          17                            60
  CLUS_4                          33                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q12.1) MUTATED        8      9      6
  DEL PEAK 13(5Q12.1) WILD-TYPE     21     23     18
D38V11, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                           8                            21
  CLUS_2                           9                            23
  CLUS_3                           6                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(5Q12.1) MUTATED        5      8      5      5      0
  DEL PEAK 13(5Q12.1) WILD-TYPE      7     14     12     19     10
D38V12, multiclass
        clus
vv       DEL PEAK 13(5Q12.1) MUTATED DEL PEAK 13(5Q12.1) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                           8                            14
  CLUS_3                           5                            12
  CLUS_4                           5                            19
  CLUS_5                           0                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 14(5Q21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q21.1) MUTATED        8     23      6      5
  DEL PEAK 14(5Q21.1) WILD-TYPE     27     38     23     16
D39V1, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                           8                            27
  CLUS_2                          23                            38
  CLUS_3                           6                            23
  CLUS_4                           5                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q21.1) MUTATED        9     18     15
  DEL PEAK 14(5Q21.1) WILD-TYPE     33     54     17
D39V2, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                           9                            33
  CLUS_2                          18                            54
  CLUS_3                          15                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q21.1) MUTATED       30     71     26
  DEL PEAK 14(5Q21.1) WILD-TYPE    172     99     52
D39V3, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                          30                           172
  CLUS_2                          71                            99
  CLUS_3                          26                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q21.1) MUTATED       45     17     23
  DEL PEAK 14(5Q21.1) WILD-TYPE     75     80     53
D39V4, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                          45                            75
  CLUS_2                          17                            80
  CLUS_3                          23                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q21.1) MUTATED       31     33     28
  DEL PEAK 14(5Q21.1) WILD-TYPE     54    111     97
D39V5, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                          31                            54
  CLUS_2                          33                           111
  CLUS_3                          28                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q21.1) MUTATED       18      6     11      9     13     15
  DEL PEAK 14(5Q21.1) WILD-TYPE     33     27     24     30     29     71
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 14(5Q21.1) MUTATED        6      5      9
  DEL PEAK 14(5Q21.1) WILD-TYPE     16     15     17
D39V6, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                          18                            33
  CLUS_2                           6                            27
  CLUS_3                          11                            24
  CLUS_4                           9                            30
  CLUS_5                          13                            29
  CLUS_6                          15                            71
  CLUS_7                           6                            16
  CLUS_8                           5                            15
  CLUS_9                           9                            17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q21.1) MUTATED       47     20     22     38
  DEL PEAK 14(5Q21.1) WILD-TYPE     74     87     68     92
D39V7, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                          47                            74
  CLUS_2                          20                            87
  CLUS_3                          22                            68
  CLUS_4                          38                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q21.1) MUTATED       29     36     12     44      6
  DEL PEAK 14(5Q21.1) WILD-TYPE     50     72     84     85     30
D39V8, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                          29                            50
  CLUS_2                          36                            72
  CLUS_3                          12                            84
  CLUS_4                          44                            85
  CLUS_5                           6                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q21.1) MUTATED       44     17     49
  DEL PEAK 14(5Q21.1) WILD-TYPE    116     48    123
D39V9, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                          44                           116
  CLUS_2                          17                            48
  CLUS_3                          49                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q21.1) MUTATED       36     14     24     36
  DEL PEAK 14(5Q21.1) WILD-TYPE     99     36     53     99
D39V10, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                          36                            99
  CLUS_2                          14                            36
  CLUS_3                          24                            53
  CLUS_4                          36                            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q21.1) MUTATED        9     10      6
  DEL PEAK 14(5Q21.1) WILD-TYPE     20     22     18
D39V11, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                          10                            22
  CLUS_3                           6                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q21.1) MUTATED        4      9      5      6      1
  DEL PEAK 14(5Q21.1) WILD-TYPE      8     13     12     18      9
D39V12, multiclass
        clus
vv       DEL PEAK 14(5Q21.1) MUTATED DEL PEAK 14(5Q21.1) WILD-TYPE
  CLUS_1                           4                             8
  CLUS_2                           9                            13
  CLUS_3                           5                            12
  CLUS_4                           6                            18
  CLUS_5                           1                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 15(5Q22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q22.2) MUTATED        8     23      2      6
  DEL PEAK 15(5Q22.2) WILD-TYPE     27     38     27     15
D40V1, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                           8                            27
  CLUS_2                          23                            38
  CLUS_3                           2                            27
  CLUS_4                           6                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q22.2) MUTATED        6     18     15
  DEL PEAK 15(5Q22.2) WILD-TYPE     36     54     17
D40V2, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                          18                            54
  CLUS_3                          15                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q22.2) MUTATED       30     72     28
  DEL PEAK 15(5Q22.2) WILD-TYPE    172     98     50
D40V3, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                          30                           172
  CLUS_2                          72                            98
  CLUS_3                          28                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q22.2) MUTATED       46     21     23
  DEL PEAK 15(5Q22.2) WILD-TYPE     74     76     53
D40V4, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                          46                            74
  CLUS_2                          21                            76
  CLUS_3                          23                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q22.2) MUTATED       32     37     29
  DEL PEAK 15(5Q22.2) WILD-TYPE     53    107     96
D40V5, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                          32                            53
  CLUS_2                          37                           107
  CLUS_3                          29                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q22.2) MUTATED       19      8     10      7     15     16
  DEL PEAK 15(5Q22.2) WILD-TYPE     32     25     25     32     27     70
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 15(5Q22.2) MUTATED        9      5      9
  DEL PEAK 15(5Q22.2) WILD-TYPE     13     15     17
D40V6, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                          19                            32
  CLUS_2                           8                            25
  CLUS_3                          10                            25
  CLUS_4                           7                            32
  CLUS_5                          15                            27
  CLUS_6                          16                            70
  CLUS_7                           9                            13
  CLUS_8                           5                            15
  CLUS_9                           9                            17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q22.2) MUTATED       51     17     24     37
  DEL PEAK 15(5Q22.2) WILD-TYPE     70     90     66     93
D40V7, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                          51                            70
  CLUS_2                          17                            90
  CLUS_3                          24                            66
  CLUS_4                          37                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q22.2) MUTATED       29     38     15     44      3
  DEL PEAK 15(5Q22.2) WILD-TYPE     50     70     81     85     33
D40V8, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                          29                            50
  CLUS_2                          38                            70
  CLUS_3                          15                            81
  CLUS_4                          44                            85
  CLUS_5                           3                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q22.2) MUTATED       48     18     48
  DEL PEAK 15(5Q22.2) WILD-TYPE    112     47    124
D40V9, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                          48                           112
  CLUS_2                          18                            47
  CLUS_3                          48                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q22.2) MUTATED       37     14     29     34
  DEL PEAK 15(5Q22.2) WILD-TYPE     98     36     48    101
D40V10, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                          37                            98
  CLUS_2                          14                            36
  CLUS_3                          29                            48
  CLUS_4                          34                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q22.2) MUTATED       11     10      6
  DEL PEAK 15(5Q22.2) WILD-TYPE     18     22     18
D40V11, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                          11                            18
  CLUS_2                          10                            22
  CLUS_3                           6                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q22.2) MUTATED        5      9      5      7      1
  DEL PEAK 15(5Q22.2) WILD-TYPE      7     13     12     17      9
D40V12, multiclass
        clus
vv       DEL PEAK 15(5Q22.2) MUTATED DEL PEAK 15(5Q22.2) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                           9                            13
  CLUS_3                           5                            12
  CLUS_4                           7                            17
  CLUS_5                           1                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 16(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED        5      7      5      3
  DEL PEAK 16(6P25.3) WILD-TYPE     30     54     24     18
D41V1, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           5                            30
  CLUS_2                           7                            54
  CLUS_3                           5                            24
  CLUS_4                           3                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED        7     10      3
  DEL PEAK 16(6P25.3) WILD-TYPE     35     62     29
D41V2, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          10                            62
  CLUS_3                           3                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       27     15     14
  DEL PEAK 16(6P25.3) WILD-TYPE    175    155     64
D41V3, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          27                           175
  CLUS_2                          15                           155
  CLUS_3                          14                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       17      8      8
  DEL PEAK 16(6P25.3) WILD-TYPE    103     89     68
D41V4, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          17                           103
  CLUS_2                           8                            89
  CLUS_3                           8                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       11     17     10
  DEL PEAK 16(6P25.3) WILD-TYPE     74    127    115
D41V5, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          11                            74
  CLUS_2                          17                           127
  CLUS_3                          10                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6P25.3) MUTATED        5      3      3      6      9      6
  DEL PEAK 16(6P25.3) WILD-TYPE     46     30     32     33     33     80
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 16(6P25.3) MUTATED        3      1      2
  DEL PEAK 16(6P25.3) WILD-TYPE     19     19     24
D41V6, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           5                            46
  CLUS_2                           3                            30
  CLUS_3                           3                            32
  CLUS_4                           6                            33
  CLUS_5                           9                            33
  CLUS_6                           6                            80
  CLUS_7                           3                            19
  CLUS_8                           1                            19
  CLUS_9                           2                            24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       17      9     12     18
  DEL PEAK 16(6P25.3) WILD-TYPE    104     98     78    112
D41V7, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          17                           104
  CLUS_2                           9                            98
  CLUS_3                          12                            78
  CLUS_4                          18                           112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED       10     14     10     16      6
  DEL PEAK 16(6P25.3) WILD-TYPE     69     94     86    113     30
D41V8, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          10                            69
  CLUS_2                          14                            94
  CLUS_3                          10                            86
  CLUS_4                          16                           113
  CLUS_5                           6                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       18     10     22
  DEL PEAK 16(6P25.3) WILD-TYPE    142     55    150
D41V9, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          18                           142
  CLUS_2                          10                            55
  CLUS_3                          22                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       18      6      8     18
  DEL PEAK 16(6P25.3) WILD-TYPE    117     44     69    117
D41V10, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          18                           117
  CLUS_2                           6                            44
  CLUS_3                           8                            69
  CLUS_4                          18                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED        7      2      1
  DEL PEAK 16(6P25.3) WILD-TYPE     22     30     23
D41V11, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           7                            22
  CLUS_2                           2                            30
  CLUS_3                           1                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED        1      0      1      5      3
  DEL PEAK 16(6P25.3) WILD-TYPE     11     22     16     19      7
D41V12, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           1                            11
  CLUS_2                           0                            22
  CLUS_3                           1                            16
  CLUS_4                           5                            19
  CLUS_5                           3                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 17(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED        3     11      5      4
  DEL PEAK 17(6Q26) WILD-TYPE     32     50     24     17
D42V1, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         3                          32
  CLUS_2                        11                          50
  CLUS_3                         5                          24
  CLUS_4                         4                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED        4     13      6
  DEL PEAK 17(6Q26) WILD-TYPE     38     59     26
D42V2, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         4                          38
  CLUS_2                        13                          59
  CLUS_3                         6                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       27     25     10
  DEL PEAK 17(6Q26) WILD-TYPE    175    145     68
D42V3, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        27                         175
  CLUS_2                        25                         145
  CLUS_3                        10                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       17     11      9
  DEL PEAK 17(6Q26) WILD-TYPE    103     86     67
D42V4, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        17                         103
  CLUS_2                        11                          86
  CLUS_3                         9                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       16     22      9
  DEL PEAK 17(6Q26) WILD-TYPE     69    122    116
D42V5, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        16                          69
  CLUS_2                        22                         122
  CLUS_3                         9                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 17(6Q26) MUTATED        8      5      3      7      7      8      4
  DEL PEAK 17(6Q26) WILD-TYPE     43     28     32     32     35     78     18
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 17(6Q26) MUTATED        3      2
  DEL PEAK 17(6Q26) WILD-TYPE     17     24
D42V6, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         8                          43
  CLUS_2                         5                          28
  CLUS_3                         3                          32
  CLUS_4                         7                          32
  CLUS_5                         7                          35
  CLUS_6                         8                          78
  CLUS_7                         4                          18
  CLUS_8                         3                          17
  CLUS_9                         2                          24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       14     13     11     24
  DEL PEAK 17(6Q26) WILD-TYPE    107     94     79    106
D42V7, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        14                         107
  CLUS_2                        13                          94
  CLUS_3                        11                          79
  CLUS_4                        24                         106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q26) MUTATED       10     14     11     23      4
  DEL PEAK 17(6Q26) WILD-TYPE     69     94     85    106     32
D42V8, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        10                          69
  CLUS_2                        14                          94
  CLUS_3                        11                          85
  CLUS_4                        23                         106
  CLUS_5                         4                          32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       20     10     27
  DEL PEAK 17(6Q26) WILD-TYPE    140     55    145
D42V9, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        20                         140
  CLUS_2                        10                          55
  CLUS_3                        27                         145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       21      6     10     20
  DEL PEAK 17(6Q26) WILD-TYPE    114     44     67    115
D42V10, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        21                         114
  CLUS_2                         6                          44
  CLUS_3                        10                          67
  CLUS_4                        20                         115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED        7      4      3
  DEL PEAK 17(6Q26) WILD-TYPE     22     28     21
D42V11, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         7                          22
  CLUS_2                         4                          28
  CLUS_3                         3                          21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q26) MUTATED        2      0      3      6      3
  DEL PEAK 17(6Q26) WILD-TYPE     10     22     14     18      7
D42V12, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         2                          10
  CLUS_2                         0                          22
  CLUS_3                         3                          14
  CLUS_4                         6                          18
  CLUS_5                         3                           7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 18(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        1      2      0      0
  DEL PEAK 18(7Q31.1) WILD-TYPE     34     59     29     21
D43V1, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           1                            34
  CLUS_2                           2                            59
  CLUS_3                           0                            29
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        0      2      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     42     70     31
D43V2, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           0                            42
  CLUS_2                           2                            70
  CLUS_3                           1                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        4      9      0
  DEL PEAK 18(7Q31.1) WILD-TYPE    198    161     78
D43V3, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           4                           198
  CLUS_2                           9                           161
  CLUS_3                           0                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        6      3      0
  DEL PEAK 18(7Q31.1) WILD-TYPE    114     94     76
D43V4, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           6                           114
  CLUS_2                           3                            94
  CLUS_3                           0                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        2      2      5
  DEL PEAK 18(7Q31.1) WILD-TYPE     83    142    120
D43V5, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           2                            83
  CLUS_2                           2                           142
  CLUS_3                           5                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(7Q31.1) MUTATED        0      1      1      1      2      3
  DEL PEAK 18(7Q31.1) WILD-TYPE     51     32     34     38     40     83
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(7Q31.1) MUTATED        1      0      0
  DEL PEAK 18(7Q31.1) WILD-TYPE     21     20     26
D43V6, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           0                            51
  CLUS_2                           1                            32
  CLUS_3                           1                            34
  CLUS_4                           1                            38
  CLUS_5                           2                            40
  CLUS_6                           3                            83
  CLUS_7                           1                            21
  CLUS_8                           0                            20
  CLUS_9                           0                            26
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        6      1      2      4
  DEL PEAK 18(7Q31.1) WILD-TYPE    115    106     88    126
D43V7, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                           1                           106
  CLUS_3                           2                            88
  CLUS_4                           4                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(7Q31.1) MUTATED        4      3      1      4      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     75    105     95    125     35
D43V8, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           4                            75
  CLUS_2                           3                           105
  CLUS_3                           1                            95
  CLUS_4                           4                           125
  CLUS_5                           1                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        6      1      5
  DEL PEAK 18(7Q31.1) WILD-TYPE    154     64    167
D43V9, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           6                           154
  CLUS_2                           1                            64
  CLUS_3                           5                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        4      2      3      3
  DEL PEAK 18(7Q31.1) WILD-TYPE    131     48     74    132
D43V10, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           4                           131
  CLUS_2                           2                            48
  CLUS_3                           3                            74
  CLUS_4                           3                           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        1      0      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     28     32     23
D43V11, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 18(7Q31.1) MUTATED"
clus
  DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE 
                            2                            83 
                   TCGA-A6-2675                    TCGA-A6-5657 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-5667                    TCGA-A6-6137 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6138                    TCGA-A6-6140 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6141                    TCGA-A6-6142 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6649                    TCGA-A6-6650 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6651                    TCGA-A6-6653 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6654                    TCGA-A6-6781 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6782                    TCGA-AA-3489 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AA-3511                    TCGA-AD-5900 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6889                    TCGA-AD-6901 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6963                    TCGA-AD-6964 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6965                    TCGA-AY-6196 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-4323                    TCGA-AZ-4616 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-5403                    TCGA-AZ-6598 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6600                    TCGA-AZ-6601 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6603                    TCGA-AZ-6605 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6607                    TCGA-CA-6718 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CA-6719                    TCGA-CK-5916 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CK-6748                    TCGA-CM-4751 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CM-5860                    TCGA-CM-6167 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6674                    TCGA-CM-6676 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6677                    TCGA-CM-6678 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6679                    TCGA-CM-6680 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-D5-5537                    TCGA-D5-6533 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-D5-6534                    TCGA-D5-6536 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-D5-6922                    TCGA-D5-6924 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A0XF                    TCGA-DM-A1D0 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1D7                    TCGA-DM-A1D8 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1D9                    TCGA-DM-A1DA 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1HA                    TCGA-DM-A280 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A282                    TCGA-DM-A285 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A28F                    TCGA-F4-6459 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6460                    TCGA-F4-6569 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6570                    TCGA-F4-6704 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6805                    TCGA-F4-6807 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6808                    TCGA-F4-6809 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6294                    TCGA-G4-6295 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6299                    TCGA-G4-6302 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6303                    TCGA-G4-6306 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6309                    TCGA-G4-6314 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6625                    TCGA-G4-6627 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6628 
"DEL PEAK 18(7Q31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(7Q31.1) MUTATED        0      1      1      0      0
  DEL PEAK 18(7Q31.1) WILD-TYPE     12     21     16     24     10
D43V12, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 18(7Q31.1) MUTATED"
clus
  DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE 
                            2                            83 
                   TCGA-A6-2675                    TCGA-A6-5657 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-5667                    TCGA-A6-6137 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6138                    TCGA-A6-6140 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6141                    TCGA-A6-6142 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6649                    TCGA-A6-6650 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6651                    TCGA-A6-6653 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6654                    TCGA-A6-6781 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6782                    TCGA-AA-3489 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AA-3511                    TCGA-AD-5900 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6889                    TCGA-AD-6901 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6963                    TCGA-AD-6964 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6965                    TCGA-AY-6196 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-4323                    TCGA-AZ-4616 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-5403                    TCGA-AZ-6598 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6600                    TCGA-AZ-6601 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6603                    TCGA-AZ-6605 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6607                    TCGA-CA-6718 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CA-6719                    TCGA-CK-5916 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CK-6748                    TCGA-CM-4751 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CM-5860                    TCGA-CM-6167 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6674                    TCGA-CM-6676 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6677                    TCGA-CM-6678 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6679                    TCGA-CM-6680 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-D5-5537                    TCGA-D5-6533 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-D5-6534                    TCGA-D5-6536 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-D5-6922                    TCGA-D5-6924 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A0XF                    TCGA-DM-A1D0 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1D7                    TCGA-DM-A1D8 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1D9                    TCGA-DM-A1DA 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1HA                    TCGA-DM-A280 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A282                    TCGA-DM-A285 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A28F                    TCGA-F4-6459 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6460                    TCGA-F4-6569 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6570                    TCGA-F4-6704 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6805                    TCGA-F4-6807 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6808                    TCGA-F4-6809 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6294                    TCGA-G4-6295 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6299                    TCGA-G4-6302 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6303                    TCGA-G4-6306 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6309                    TCGA-G4-6314 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6625                    TCGA-G4-6627 
"DEL PEAK 18(7Q31.1) WILD-TYPE" "DEL PEAK 18(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6628 
"DEL PEAK 18(7Q31.1) WILD-TYPE" 

Clustering(44) Variable = DEL PEAK 19(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.3) MUTATED       12     33      6     11
  DEL PEAK 19(8P23.3) WILD-TYPE     23     28     23     10
D44V1, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          12                            23
  CLUS_2                          33                            28
  CLUS_3                           6                            23
  CLUS_4                          11                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.3) MUTATED       10     29     23
  DEL PEAK 19(8P23.3) WILD-TYPE     32     43      9
D44V2, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          10                            32
  CLUS_2                          29                            43
  CLUS_3                          23                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.3) MUTATED       35     99     55
  DEL PEAK 19(8P23.3) WILD-TYPE    167     71     23
D44V3, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          35                           167
  CLUS_2                          99                            71
  CLUS_3                          55                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.3) MUTATED       70     28     27
  DEL PEAK 19(8P23.3) WILD-TYPE     50     69     49
D44V4, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          70                            50
  CLUS_2                          28                            69
  CLUS_3                          27                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.3) MUTATED       38     52     47
  DEL PEAK 19(8P23.3) WILD-TYPE     47     92     78
D44V5, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          38                            47
  CLUS_2                          52                            92
  CLUS_3                          47                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P23.3) MUTATED       30      9     15     14     17     29
  DEL PEAK 19(8P23.3) WILD-TYPE     21     24     20     25     25     57
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 19(8P23.3) MUTATED        5      6     12
  DEL PEAK 19(8P23.3) WILD-TYPE     17     14     14
D44V6, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          30                            21
  CLUS_2                           9                            24
  CLUS_3                          15                            20
  CLUS_4                          14                            25
  CLUS_5                          17                            25
  CLUS_6                          29                            57
  CLUS_7                           5                            17
  CLUS_8                           6                            14
  CLUS_9                          12                            14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.3) MUTATED       65     22     43     59
  DEL PEAK 19(8P23.3) WILD-TYPE     56     85     47     71
D44V7, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          65                            56
  CLUS_2                          22                            85
  CLUS_3                          43                            47
  CLUS_4                          59                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P23.3) MUTATED       47     50     19     67      6
  DEL PEAK 19(8P23.3) WILD-TYPE     32     58     77     62     30
D44V8, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          47                            32
  CLUS_2                          50                            58
  CLUS_3                          19                            77
  CLUS_4                          67                            62
  CLUS_5                           6                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.3) MUTATED       71     21     75
  DEL PEAK 19(8P23.3) WILD-TYPE     89     44     97
D44V9, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          71                            89
  CLUS_2                          21                            44
  CLUS_3                          75                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.3) MUTATED       50     21     43     53
  DEL PEAK 19(8P23.3) WILD-TYPE     85     29     34     82
D44V10, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          50                            85
  CLUS_2                          21                            29
  CLUS_3                          43                            34
  CLUS_4                          53                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.3) MUTATED       14     15     13
  DEL PEAK 19(8P23.3) WILD-TYPE     15     17     11
D44V11, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          14                            15
  CLUS_2                          15                            17
  CLUS_3                          13                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P23.3) MUTATED        9     12     10      6      5
  DEL PEAK 19(8P23.3) WILD-TYPE      3     10      7     18      5
D44V12, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                           9                             3
  CLUS_2                          12                            10
  CLUS_3                          10                             7
  CLUS_4                           6                            18
  CLUS_5                           5                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 20(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED        9     35      8     11
  DEL PEAK 20(8P22) WILD-TYPE     26     26     21     10
D45V1, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                         9                          26
  CLUS_2                        35                          26
  CLUS_3                         8                          21
  CLUS_4                        11                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED        8     34     21
  DEL PEAK 20(8P22) WILD-TYPE     34     38     11
D45V2, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                         8                          34
  CLUS_2                        34                          38
  CLUS_3                        21                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED       36    108     59
  DEL PEAK 20(8P22) WILD-TYPE    166     62     19
D45V3, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        36                         166
  CLUS_2                       108                          62
  CLUS_3                        59                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED       77     32     29
  DEL PEAK 20(8P22) WILD-TYPE     43     65     47
D45V4, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        77                          43
  CLUS_2                        32                          65
  CLUS_3                        29                          47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED       42     60     51
  DEL PEAK 20(8P22) WILD-TYPE     43     84     74
D45V5, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        42                          43
  CLUS_2                        60                          84
  CLUS_3                        51                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 20(8P22) MUTATED       33     12     16     15     17     31      5
  DEL PEAK 20(8P22) WILD-TYPE     18     21     19     24     25     55     17
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 20(8P22) MUTATED        9     15
  DEL PEAK 20(8P22) WILD-TYPE     11     11
D45V6, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        33                          18
  CLUS_2                        12                          21
  CLUS_3                        16                          19
  CLUS_4                        15                          24
  CLUS_5                        17                          25
  CLUS_6                        31                          55
  CLUS_7                         5                          17
  CLUS_8                         9                          11
  CLUS_9                        15                          11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED       73     27     46     57
  DEL PEAK 20(8P22) WILD-TYPE     48     80     44     73
D45V7, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        73                          48
  CLUS_2                        27                          80
  CLUS_3                        46                          44
  CLUS_4                        57                          73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(8P22) MUTATED       52     54     23     69      5
  DEL PEAK 20(8P22) WILD-TYPE     27     54     73     60     31
D45V8, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        52                          27
  CLUS_2                        54                          54
  CLUS_3                        23                          73
  CLUS_4                        69                          60
  CLUS_5                         5                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED       78     26     76
  DEL PEAK 20(8P22) WILD-TYPE     82     39     96
D45V9, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        78                          82
  CLUS_2                        26                          39
  CLUS_3                        76                          96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED       55     26     46     53
  DEL PEAK 20(8P22) WILD-TYPE     80     24     31     82
D45V10, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        55                          80
  CLUS_2                        26                          24
  CLUS_3                        46                          31
  CLUS_4                        53                          82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED       13     17     13
  DEL PEAK 20(8P22) WILD-TYPE     16     15     11
D45V11, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        13                          16
  CLUS_2                        17                          15
  CLUS_3                        13                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(8P22) MUTATED        8     14     10      6      5
  DEL PEAK 20(8P22) WILD-TYPE      4      8      7     18      5
D45V12, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                         8                           4
  CLUS_2                        14                           8
  CLUS_3                        10                           7
  CLUS_4                         6                          18
  CLUS_5                         5                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 21(8Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED        3      9      2      0
  DEL PEAK 21(8Q11.1) WILD-TYPE     32     52     27     21
D46V1, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           3                            32
  CLUS_2                           9                            52
  CLUS_3                           2                            27
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED        2     11      1
  DEL PEAK 21(8Q11.1) WILD-TYPE     40     61     31
D46V2, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           2                            40
  CLUS_2                          11                            61
  CLUS_3                           1                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED       11     18      1
  DEL PEAK 21(8Q11.1) WILD-TYPE    191    152     77
D46V3, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          11                           191
  CLUS_2                          18                           152
  CLUS_3                           1                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED        8      5      5
  DEL PEAK 21(8Q11.1) WILD-TYPE    112     92     71
D46V4, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           8                           112
  CLUS_2                           5                            92
  CLUS_3                           5                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED        9     12      5
  DEL PEAK 21(8Q11.1) WILD-TYPE     76    132    120
D46V5, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           9                            76
  CLUS_2                          12                           132
  CLUS_3                           5                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(8Q11.1) MUTATED        6      3      4      2      4      4
  DEL PEAK 21(8Q11.1) WILD-TYPE     45     30     31     37     38     82
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(8Q11.1) MUTATED        1      0      2
  DEL PEAK 21(8Q11.1) WILD-TYPE     21     20     24
D46V6, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           6                            45
  CLUS_2                           3                            30
  CLUS_3                           4                            31
  CLUS_4                           2                            37
  CLUS_5                           4                            38
  CLUS_6                           4                            82
  CLUS_7                           1                            21
  CLUS_8                           0                            20
  CLUS_9                           2                            24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED        9      4      5     12
  DEL PEAK 21(8Q11.1) WILD-TYPE    112    103     85    118
D46V7, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           9                           112
  CLUS_2                           4                           103
  CLUS_3                           5                            85
  CLUS_4                          12                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(8Q11.1) MUTATED        6      3      5     15      1
  DEL PEAK 21(8Q11.1) WILD-TYPE     73    105     91    114     35
D46V8, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           6                            73
  CLUS_2                           3                           105
  CLUS_3                           5                            91
  CLUS_4                          15                           114
  CLUS_5                           1                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED        9      2     16
  DEL PEAK 21(8Q11.1) WILD-TYPE    151     63    156
D46V9, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           9                           151
  CLUS_2                           2                            63
  CLUS_3                          16                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED        5      4      7     11
  DEL PEAK 21(8Q11.1) WILD-TYPE    130     46     70    124
D46V10, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           5                           130
  CLUS_2                           4                            46
  CLUS_3                           7                            70
  CLUS_4                          11                           124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED        1      3      2
  DEL PEAK 21(8Q11.1) WILD-TYPE     28     29     22
D46V11, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           1                            28
  CLUS_2                           3                            29
  CLUS_3                           2                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(8Q11.1) MUTATED        1      1      2      2      0
  DEL PEAK 21(8Q11.1) WILD-TYPE     11     21     15     22     10
D46V12, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           1                            11
  CLUS_2                           1                            21
  CLUS_3                           2                            15
  CLUS_4                           2                            22
  CLUS_5                           0                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 22(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED        3     11      2      3
  DEL PEAK 22(9P21.3) WILD-TYPE     32     50     27     18
D47V1, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           3                            32
  CLUS_2                          11                            50
  CLUS_3                           2                            27
  CLUS_4                           3                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED        2     10      7
  DEL PEAK 22(9P21.3) WILD-TYPE     40     62     25
D47V2, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           2                            40
  CLUS_2                          10                            62
  CLUS_3                           7                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED       16     32     14
  DEL PEAK 22(9P21.3) WILD-TYPE    186    138     64
D47V3, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          16                           186
  CLUS_2                          32                           138
  CLUS_3                          14                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED       23      9     10
  DEL PEAK 22(9P21.3) WILD-TYPE     97     88     66
D47V4, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          23                            97
  CLUS_2                           9                            88
  CLUS_3                          10                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED       13     20     14
  DEL PEAK 22(9P21.3) WILD-TYPE     72    124    111
D47V5, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          13                            72
  CLUS_2                          20                           124
  CLUS_3                          14                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9P21.3) MUTATED        9      3      6      5      8      6
  DEL PEAK 22(9P21.3) WILD-TYPE     42     30     29     34     34     80
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(9P21.3) MUTATED        1      4      5
  DEL PEAK 22(9P21.3) WILD-TYPE     21     16     21
D47V6, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           9                            42
  CLUS_2                           3                            30
  CLUS_3                           6                            29
  CLUS_4                           5                            34
  CLUS_5                           8                            34
  CLUS_6                           6                            80
  CLUS_7                           1                            21
  CLUS_8                           4                            16
  CLUS_9                           5                            21
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED       26      8     13     15
  DEL PEAK 22(9P21.3) WILD-TYPE     95     99     77    115
D47V7, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          26                            95
  CLUS_2                           8                            99
  CLUS_3                          13                            77
  CLUS_4                          15                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9P21.3) MUTATED       16     19      6     21      0
  DEL PEAK 22(9P21.3) WILD-TYPE     63     89     90    108     36
D47V8, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          16                            63
  CLUS_2                          19                            89
  CLUS_3                           6                            90
  CLUS_4                          21                           108
  CLUS_5                           0                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED       25      7     22
  DEL PEAK 22(9P21.3) WILD-TYPE    135     58    150
D47V9, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          25                           135
  CLUS_2                           7                            58
  CLUS_3                          22                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED       20      5     15     14
  DEL PEAK 22(9P21.3) WILD-TYPE    115     45     62    121
D47V10, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          20                           115
  CLUS_2                           5                            45
  CLUS_3                          15                            62
  CLUS_4                          14                           121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED        8      5      2
  DEL PEAK 22(9P21.3) WILD-TYPE     21     27     22
D47V11, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           8                            21
  CLUS_2                           5                            27
  CLUS_3                           2                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9P21.3) MUTATED        3      2      3      4      3
  DEL PEAK 22(9P21.3) WILD-TYPE      9     20     14     20      7
D47V12, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           3                             9
  CLUS_2                           2                            20
  CLUS_3                           3                            14
  CLUS_4                           4                            20
  CLUS_5                           3                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 23(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED        4     13      1      4
  DEL PEAK 23(10P15.3) WILD-TYPE     31     48     28     17
D48V1, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                           13                             48
  CLUS_3                            1                             28
  CLUS_4                            4                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED        3     11      8
  DEL PEAK 23(10P15.3) WILD-TYPE     39     61     24
D48V2, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           11                             61
  CLUS_3                            8                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED       16     46     18
  DEL PEAK 23(10P15.3) WILD-TYPE    186    124     60
D48V3, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           16                            186
  CLUS_2                           46                            124
  CLUS_3                           18                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED       37      7     13
  DEL PEAK 23(10P15.3) WILD-TYPE     83     90     63
D48V4, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           37                             83
  CLUS_2                            7                             90
  CLUS_3                           13                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED       17     27     20
  DEL PEAK 23(10P15.3) WILD-TYPE     68    117    105
D48V5, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           17                             68
  CLUS_2                           27                            117
  CLUS_3                           20                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10P15.3) MUTATED       15      3      7      7      8     10
  DEL PEAK 23(10P15.3) WILD-TYPE     36     30     28     32     34     76
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 23(10P15.3) MUTATED        3      4      7
  DEL PEAK 23(10P15.3) WILD-TYPE     19     16     19
D48V6, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           15                             36
  CLUS_2                            3                             30
  CLUS_3                            7                             28
  CLUS_4                            7                             32
  CLUS_5                            8                             34
  CLUS_6                           10                             76
  CLUS_7                            3                             19
  CLUS_8                            4                             16
  CLUS_9                            7                             19
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED       33      7     18     21
  DEL PEAK 23(10P15.3) WILD-TYPE     88    100     72    109
D48V7, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           33                             88
  CLUS_2                            7                            100
  CLUS_3                           18                             72
  CLUS_4                           21                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10P15.3) MUTATED       27     19      7     23      3
  DEL PEAK 23(10P15.3) WILD-TYPE     52     89     89    106     33
D48V8, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           27                             52
  CLUS_2                           19                             89
  CLUS_3                            7                             89
  CLUS_4                           23                            106
  CLUS_5                            3                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED       29     14     26
  DEL PEAK 23(10P15.3) WILD-TYPE    131     51    146
D48V9, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           29                            131
  CLUS_2                           14                             51
  CLUS_3                           26                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED       22     13     16     18
  DEL PEAK 23(10P15.3) WILD-TYPE    113     37     61    117
D48V10, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           22                            113
  CLUS_2                           13                             37
  CLUS_3                           16                             61
  CLUS_4                           18                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED        6      8      3
  DEL PEAK 23(10P15.3) WILD-TYPE     23     24     21
D48V11, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            8                             24
  CLUS_3                            3                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10P15.3) MUTATED        4      8      0      3      2
  DEL PEAK 23(10P15.3) WILD-TYPE      8     14     17     21      8
D48V12, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            8                             14
  CLUS_3                            0                             17
  CLUS_4                            3                             21
  CLUS_5                            2                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 24(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED        3     19      1      4
  DEL PEAK 24(10Q21.1) WILD-TYPE     32     42     28     17
D49V1, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            3                             32
  CLUS_2                           19                             42
  CLUS_3                            1                             28
  CLUS_4                            4                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED        3     14     10
  DEL PEAK 24(10Q21.1) WILD-TYPE     39     58     22
D49V2, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           14                             58
  CLUS_3                           10                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED       17     63     18
  DEL PEAK 24(10Q21.1) WILD-TYPE    185    107     60
D49V3, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           17                            185
  CLUS_2                           63                            107
  CLUS_3                           18                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED       44     12     14
  DEL PEAK 24(10Q21.1) WILD-TYPE     76     85     62
D49V4, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           44                             76
  CLUS_2                           12                             85
  CLUS_3                           14                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED       20     32     23
  DEL PEAK 24(10Q21.1) WILD-TYPE     65    112    102
D49V5, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           20                             65
  CLUS_2                           32                            112
  CLUS_3                           23                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q21.1) MUTATED       15      2     11     10      9     14
  DEL PEAK 24(10Q21.1) WILD-TYPE     36     31     24     29     33     72
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 24(10Q21.1) MUTATED        4      3      7
  DEL PEAK 24(10Q21.1) WILD-TYPE     18     17     19
D49V6, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           15                             36
  CLUS_2                            2                             31
  CLUS_3                           11                             24
  CLUS_4                           10                             29
  CLUS_5                            9                             33
  CLUS_6                           14                             72
  CLUS_7                            4                             18
  CLUS_8                            3                             17
  CLUS_9                            7                             19
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED       45      8     19     25
  DEL PEAK 24(10Q21.1) WILD-TYPE     76     99     71    105
D49V7, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           45                             76
  CLUS_2                            8                             99
  CLUS_3                           19                             71
  CLUS_4                           25                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10Q21.1) MUTATED       28     27      9     32      1
  DEL PEAK 24(10Q21.1) WILD-TYPE     51     81     87     97     35
D49V8, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           28                             51
  CLUS_2                           27                             81
  CLUS_3                            9                             87
  CLUS_4                           32                             97
  CLUS_5                            1                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED       36     14     33
  DEL PEAK 24(10Q21.1) WILD-TYPE    124     51    139
D49V9, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           36                            124
  CLUS_2                           14                             51
  CLUS_3                           33                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED       27     13     19     24
  DEL PEAK 24(10Q21.1) WILD-TYPE    108     37     58    111
D49V10, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           27                            108
  CLUS_2                           13                             37
  CLUS_3                           19                             58
  CLUS_4                           24                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED        6      8      4
  DEL PEAK 24(10Q21.1) WILD-TYPE     23     24     20
D49V11, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            8                             24
  CLUS_3                            4                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10Q21.1) MUTATED        4      5      2      5      2
  DEL PEAK 24(10Q21.1) WILD-TYPE      8     17     15     19      8
D49V12, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            5                             17
  CLUS_3                            2                             15
  CLUS_4                            5                             19
  CLUS_5                            2                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 25(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED        3     17      4      5
  DEL PEAK 25(10Q23.31) WILD-TYPE     32     44     25     16
D50V1, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                             3                              32
  CLUS_2                            17                              44
  CLUS_3                             4                              25
  CLUS_4                             5                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED        4     15     10
  DEL PEAK 25(10Q23.31) WILD-TYPE     38     57     22
D50V2, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                             4                              38
  CLUS_2                            15                              57
  CLUS_3                            10                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED       25     63     21
  DEL PEAK 25(10Q23.31) WILD-TYPE    177    107     57
D50V3, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            25                             177
  CLUS_2                            63                             107
  CLUS_3                            21                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED       47     15     16
  DEL PEAK 25(10Q23.31) WILD-TYPE     73     82     60
D50V4, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            47                              73
  CLUS_2                            15                              82
  CLUS_3                            16                              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED       21     34     29
  DEL PEAK 25(10Q23.31) WILD-TYPE     64    110     96
D50V5, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            21                              64
  CLUS_2                            34                             110
  CLUS_3                            29                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q23.31) MUTATED       16      3     13     11      8     16
  DEL PEAK 25(10Q23.31) WILD-TYPE     35     30     22     28     34     70
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 25(10Q23.31) MUTATED        5      4      8
  DEL PEAK 25(10Q23.31) WILD-TYPE     17     16     18
D50V6, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            16                              35
  CLUS_2                             3                              30
  CLUS_3                            13                              22
  CLUS_4                            11                              28
  CLUS_5                             8                              34
  CLUS_6                            16                              70
  CLUS_7                             5                              17
  CLUS_8                             4                              16
  CLUS_9                             8                              18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED       45     18     20     25
  DEL PEAK 25(10Q23.31) WILD-TYPE     76     89     70    105
D50V7, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            45                              76
  CLUS_2                            18                              89
  CLUS_3                            20                              70
  CLUS_4                            25                             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(10Q23.31) MUTATED       29     32     12     33      2
  DEL PEAK 25(10Q23.31) WILD-TYPE     50     76     84     96     34
D50V8, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            29                              50
  CLUS_2                            32                              76
  CLUS_3                            12                              84
  CLUS_4                            33                              96
  CLUS_5                             2                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED       39     18     37
  DEL PEAK 25(10Q23.31) WILD-TYPE    121     47    135
D50V9, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            39                             121
  CLUS_2                            18                              47
  CLUS_3                            37                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED       31     17     21     25
  DEL PEAK 25(10Q23.31) WILD-TYPE    104     33     56    110
D50V10, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            31                             104
  CLUS_2                            17                              33
  CLUS_3                            21                              56
  CLUS_4                            25                             110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED       10      8      4
  DEL PEAK 25(10Q23.31) WILD-TYPE     19     24     20
D50V11, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            10                              19
  CLUS_2                             8                              24
  CLUS_3                             4                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(10Q23.31) MUTATED        4      7      2      5      4
  DEL PEAK 25(10Q23.31) WILD-TYPE      8     15     15     19      6
D50V12, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                             4                               8
  CLUS_2                             7                              15
  CLUS_3                             2                              15
  CLUS_4                             5                              19
  CLUS_5                             4                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 26(10Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED        4     16      4      7
  DEL PEAK 26(10Q25.2) WILD-TYPE     31     45     25     14
D51V1, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                           16                             45
  CLUS_3                            4                             25
  CLUS_4                            7                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED        3     18     10
  DEL PEAK 26(10Q25.2) WILD-TYPE     39     54     22
D51V2, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           18                             54
  CLUS_3                           10                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED       23     68     18
  DEL PEAK 26(10Q25.2) WILD-TYPE    179    102     60
D51V3, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           23                            179
  CLUS_2                           68                            102
  CLUS_3                           18                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED       49     13     13
  DEL PEAK 26(10Q25.2) WILD-TYPE     71     84     63
D51V4, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           49                             71
  CLUS_2                           13                             84
  CLUS_3                           13                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED       27     35     24
  DEL PEAK 26(10Q25.2) WILD-TYPE     58    109    101
D51V5, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           27                             58
  CLUS_2                           35                            109
  CLUS_3                           24                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10Q25.2) MUTATED       18      4     13      9     10     16
  DEL PEAK 26(10Q25.2) WILD-TYPE     33     29     22     30     32     70
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 26(10Q25.2) MUTATED        5      3      8
  DEL PEAK 26(10Q25.2) WILD-TYPE     17     17     18
D51V6, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           18                             33
  CLUS_2                            4                             29
  CLUS_3                           13                             22
  CLUS_4                            9                             30
  CLUS_5                           10                             32
  CLUS_6                           16                             70
  CLUS_7                            5                             17
  CLUS_8                            3                             17
  CLUS_9                            8                             18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED       48     10     20     30
  DEL PEAK 26(10Q25.2) WILD-TYPE     73     97     70    100
D51V7, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           48                             73
  CLUS_2                           10                             97
  CLUS_3                           20                             70
  CLUS_4                           30                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10Q25.2) MUTATED       32     29      7     39      1
  DEL PEAK 26(10Q25.2) WILD-TYPE     47     79     89     90     35
D51V8, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           32                             47
  CLUS_2                           29                             79
  CLUS_3                            7                             89
  CLUS_4                           39                             90
  CLUS_5                            1                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED       37     16     41
  DEL PEAK 26(10Q25.2) WILD-TYPE    123     49    131
D51V9, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           37                            123
  CLUS_2                           16                             49
  CLUS_3                           41                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED       28     14     22     30
  DEL PEAK 26(10Q25.2) WILD-TYPE    107     36     55    105
D51V10, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           28                            107
  CLUS_2                           14                             36
  CLUS_3                           22                             55
  CLUS_4                           30                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED       11      8      7
  DEL PEAK 26(10Q25.2) WILD-TYPE     18     24     17
D51V11, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                            8                             24
  CLUS_3                            7                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10Q25.2) MUTATED        4      8      5      5      4
  DEL PEAK 26(10Q25.2) WILD-TYPE      8     14     12     19      6
D51V12, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            8                             14
  CLUS_3                            5                             12
  CLUS_4                            5                             19
  CLUS_5                            4                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 27(12P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.2) MUTATED        2     13      0      2
  DEL PEAK 27(12P13.2) WILD-TYPE     33     48     29     19
D52V1, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                           13                             48
  CLUS_3                            0                             29
  CLUS_4                            2                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.2) MUTATED        0     10      7
  DEL PEAK 27(12P13.2) WILD-TYPE     42     62     25
D52V2, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            0                             42
  CLUS_2                           10                             62
  CLUS_3                            7                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.2) MUTATED        5     44     11
  DEL PEAK 27(12P13.2) WILD-TYPE    197    126     67
D52V3, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            5                            197
  CLUS_2                           44                            126
  CLUS_3                           11                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.2) MUTATED       28     10      6
  DEL PEAK 27(12P13.2) WILD-TYPE     92     87     70
D52V4, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           28                             92
  CLUS_2                           10                             87
  CLUS_3                            6                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.2) MUTATED       10     17     18
  DEL PEAK 27(12P13.2) WILD-TYPE     75    127    107
D52V5, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           10                             75
  CLUS_2                           17                            127
  CLUS_3                           18                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12P13.2) MUTATED        6      4      4      7      3     10
  DEL PEAK 27(12P13.2) WILD-TYPE     45     29     31     32     39     76
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 27(12P13.2) MUTATED        4      2      5
  DEL PEAK 27(12P13.2) WILD-TYPE     18     18     21
D52V6, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            6                             45
  CLUS_2                            4                             29
  CLUS_3                            4                             31
  CLUS_4                            7                             32
  CLUS_5                            3                             39
  CLUS_6                           10                             76
  CLUS_7                            4                             18
  CLUS_8                            2                             18
  CLUS_9                            5                             21
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.2) MUTATED       27      4     11     18
  DEL PEAK 27(12P13.2) WILD-TYPE     94    103     79    112
D52V7, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           27                             94
  CLUS_2                            4                            103
  CLUS_3                           11                             79
  CLUS_4                           18                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12P13.2) MUTATED       16     21      2     21      0
  DEL PEAK 27(12P13.2) WILD-TYPE     63     87     94    108     36
D52V8, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           16                             63
  CLUS_2                           21                             87
  CLUS_3                            2                             94
  CLUS_4                           21                            108
  CLUS_5                            0                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.2) MUTATED       20     10     21
  DEL PEAK 27(12P13.2) WILD-TYPE    140     55    151
D52V9, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           20                            140
  CLUS_2                           10                             55
  CLUS_3                           21                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.2) MUTATED       21      3     11     16
  DEL PEAK 27(12P13.2) WILD-TYPE    114     47     66    119
D52V10, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           21                            114
  CLUS_2                            3                             47
  CLUS_3                           11                             66
  CLUS_4                           16                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.2) MUTATED        6      2      2
  DEL PEAK 27(12P13.2) WILD-TYPE     23     30     22
D52V11, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            2                             30
  CLUS_3                            2                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12P13.2) MUTATED        4      3      0      0      3
  DEL PEAK 27(12P13.2) WILD-TYPE      8     19     17     24      7
D52V12, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            3                             19
  CLUS_3                            0                             17
  CLUS_4                            0                             24
  CLUS_5                            3                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 28(13Q14.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q14.13) MUTATED        0      4      2      0
  DEL PEAK 28(13Q14.13) WILD-TYPE     35     57     27     21
D53V1, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             0                              35
  CLUS_2                             4                              57
  CLUS_3                             2                              27
  CLUS_4                             0                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q14.13) MUTATED        1      4      1
  DEL PEAK 28(13Q14.13) WILD-TYPE     41     68     31
D53V2, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             1                              41
  CLUS_2                             4                              68
  CLUS_3                             1                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q14.13) MUTATED       10      4      5
  DEL PEAK 28(13Q14.13) WILD-TYPE    192    166     73
D53V3, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                            10                             192
  CLUS_2                             4                             166
  CLUS_3                             5                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q14.13) MUTATED        4      3      6
  DEL PEAK 28(13Q14.13) WILD-TYPE    116     94     70
D53V4, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             4                             116
  CLUS_2                             3                              94
  CLUS_3                             6                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q14.13) MUTATED        3      5      6
  DEL PEAK 28(13Q14.13) WILD-TYPE     82    139    119
D53V5, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             3                              82
  CLUS_2                             5                             139
  CLUS_3                             6                             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(13Q14.13) MUTATED        4      0      1      2      2      4
  DEL PEAK 28(13Q14.13) WILD-TYPE     47     33     34     37     40     82
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 28(13Q14.13) MUTATED        1      0      0
  DEL PEAK 28(13Q14.13) WILD-TYPE     21     20     26
D53V6, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             4                              47
  CLUS_2                             0                              33
  CLUS_3                             1                              34
  CLUS_4                             2                              37
  CLUS_5                             2                              40
  CLUS_6                             4                              82
  CLUS_7                             1                              21
  CLUS_8                             0                              20
  CLUS_9                             0                              26
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q14.13) MUTATED        5      4      5      5
  DEL PEAK 28(13Q14.13) WILD-TYPE    116    103     85    125
D53V7, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             5                             116
  CLUS_2                             4                             103
  CLUS_3                             5                              85
  CLUS_4                             5                             125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(13Q14.13) MUTATED        2      5      5      5      2
  DEL PEAK 28(13Q14.13) WILD-TYPE     77    103     91    124     34
D53V8, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             2                              77
  CLUS_2                             5                             103
  CLUS_3                             5                              91
  CLUS_4                             5                             124
  CLUS_5                             2                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q14.13) MUTATED        6      4      8
  DEL PEAK 28(13Q14.13) WILD-TYPE    154     61    164
D53V9, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             6                             154
  CLUS_2                             4                              61
  CLUS_3                             8                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q14.13) MUTATED        5      2      4      7
  DEL PEAK 28(13Q14.13) WILD-TYPE    130     48     73    128
D53V10, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             5                             130
  CLUS_2                             2                              48
  CLUS_3                             4                              73
  CLUS_4                             7                             128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q14.13) MUTATED        1      3      0
  DEL PEAK 28(13Q14.13) WILD-TYPE     28     29     24
D53V11, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             1                              28
  CLUS_2                             3                              29
  CLUS_3                             0                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(13Q14.13) MUTATED        1      0      0      2      1
  DEL PEAK 28(13Q14.13) WILD-TYPE     11     22     17     22      9
D53V12, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             1                              11
  CLUS_2                             0                              22
  CLUS_3                             0                              17
  CLUS_4                             2                              22
  CLUS_5                             1                               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 29(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q31.1) MUTATED        6     36      3     10
  DEL PEAK 29(14Q31.1) WILD-TYPE     29     25     26     11
D54V1, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                           36                             25
  CLUS_3                            3                             26
  CLUS_4                           10                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q31.1) MUTATED        6     29     20
  DEL PEAK 29(14Q31.1) WILD-TYPE     36     43     12
D54V2, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                           29                             43
  CLUS_3                           20                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q31.1) MUTATED       28    107     15
  DEL PEAK 29(14Q31.1) WILD-TYPE    174     63     63
D54V3, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           28                            174
  CLUS_2                          107                             63
  CLUS_3                           15                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q31.1) MUTATED       57     18     18
  DEL PEAK 29(14Q31.1) WILD-TYPE     63     79     58
D54V4, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           57                             63
  CLUS_2                           18                             79
  CLUS_3                           18                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q31.1) MUTATED       31     57     30
  DEL PEAK 29(14Q31.1) WILD-TYPE     54     87     95
D54V5, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           31                             54
  CLUS_2                           57                             87
  CLUS_3                           30                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(14Q31.1) MUTATED       14     11     16     15     16     21
  DEL PEAK 29(14Q31.1) WILD-TYPE     37     22     19     24     26     65
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 29(14Q31.1) MUTATED        5      8     12
  DEL PEAK 29(14Q31.1) WILD-TYPE     17     12     14
D54V6, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           14                             37
  CLUS_2                           11                             22
  CLUS_3                           16                             19
  CLUS_4                           15                             24
  CLUS_5                           16                             26
  CLUS_6                           21                             65
  CLUS_7                            5                             17
  CLUS_8                            8                             12
  CLUS_9                           12                             14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q31.1) MUTATED       62     12     23     53
  DEL PEAK 29(14Q31.1) WILD-TYPE     59     95     67     77
D54V7, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           62                             59
  CLUS_2                           12                             95
  CLUS_3                           23                             67
  CLUS_4                           53                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(14Q31.1) MUTATED       33     46      9     60      2
  DEL PEAK 29(14Q31.1) WILD-TYPE     46     62     87     69     34
D54V8, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           33                             46
  CLUS_2                           46                             62
  CLUS_3                            9                             87
  CLUS_4                           60                             69
  CLUS_5                            2                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q31.1) MUTATED       45     23     62
  DEL PEAK 29(14Q31.1) WILD-TYPE    115     42    110
D54V9, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           45                            115
  CLUS_2                           23                             42
  CLUS_3                           62                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q31.1) MUTATED       42      9     34     45
  DEL PEAK 29(14Q31.1) WILD-TYPE     93     41     43     90
D54V10, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           42                             93
  CLUS_2                            9                             41
  CLUS_3                           34                             43
  CLUS_4                           45                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q31.1) MUTATED       14      9      9
  DEL PEAK 29(14Q31.1) WILD-TYPE     15     23     15
D54V11, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           14                             15
  CLUS_2                            9                             23
  CLUS_3                            9                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(14Q31.1) MUTATED        5      8      7      4      8
  DEL PEAK 29(14Q31.1) WILD-TYPE      7     14     10     20      2
D54V12, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            8                             14
  CLUS_3                            7                             10
  CLUS_4                            4                             20
  CLUS_5                            8                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 30(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(15Q11.2) MUTATED        8     35      6     11
  DEL PEAK 30(15Q11.2) WILD-TYPE     27     26     23     10
D55V1, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                           35                             26
  CLUS_3                            6                             23
  CLUS_4                           11                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q11.2) MUTATED        8     33     19
  DEL PEAK 30(15Q11.2) WILD-TYPE     34     39     13
D55V2, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           33                             39
  CLUS_3                           19                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q11.2) MUTATED       34    117     26
  DEL PEAK 30(15Q11.2) WILD-TYPE    168     53     52
D55V3, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           34                            168
  CLUS_2                          117                             53
  CLUS_3                           26                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q11.2) MUTATED       65     28     22
  DEL PEAK 30(15Q11.2) WILD-TYPE     55     69     54
D55V4, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           65                             55
  CLUS_2                           28                             69
  CLUS_3                           22                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q11.2) MUTATED       40     51     42
  DEL PEAK 30(15Q11.2) WILD-TYPE     45     93     83
D55V5, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           40                             45
  CLUS_2                           51                             93
  CLUS_3                           42                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(15Q11.2) MUTATED       21      8     18     15     16     29
  DEL PEAK 30(15Q11.2) WILD-TYPE     30     25     17     24     26     57
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 30(15Q11.2) MUTATED        6      7     13
  DEL PEAK 30(15Q11.2) WILD-TYPE     16     13     13
D55V6, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           21                             30
  CLUS_2                            8                             25
  CLUS_3                           18                             17
  CLUS_4                           15                             24
  CLUS_5                           16                             26
  CLUS_6                           29                             57
  CLUS_7                            6                             16
  CLUS_8                            7                             13
  CLUS_9                           13                             13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(15Q11.2) MUTATED       64     18     36     58
  DEL PEAK 30(15Q11.2) WILD-TYPE     57     89     54     72
D55V7, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           64                             57
  CLUS_2                           18                             89
  CLUS_3                           36                             54
  CLUS_4                           58                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(15Q11.2) MUTATED       44     52     11     63      6
  DEL PEAK 30(15Q11.2) WILD-TYPE     35     56     85     66     30
D55V8, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           44                             35
  CLUS_2                           52                             56
  CLUS_3                           11                             85
  CLUS_4                           63                             66
  CLUS_5                            6                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q11.2) MUTATED       62     26     67
  DEL PEAK 30(15Q11.2) WILD-TYPE     98     39    105
D55V9, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           62                             98
  CLUS_2                           26                             39
  CLUS_3                           67                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(15Q11.2) MUTATED       49     21     33     52
  DEL PEAK 30(15Q11.2) WILD-TYPE     86     29     44     83
D55V10, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           49                             86
  CLUS_2                           21                             29
  CLUS_3                           33                             44
  CLUS_4                           52                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q11.2) MUTATED       18     13     12
  DEL PEAK 30(15Q11.2) WILD-TYPE     11     19     12
D55V11, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           18                             11
  CLUS_2                           13                             19
  CLUS_3                           12                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(15Q11.2) MUTATED        8     13      8      8      6
  DEL PEAK 30(15Q11.2) WILD-TYPE      4      9      9     16      4
D55V12, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                            8                              4
  CLUS_2                           13                              9
  CLUS_3                            8                              9
  CLUS_4                            8                             16
  CLUS_5                            6                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 31(15Q15.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q15.2) MUTATED        8     33      6     11
  DEL PEAK 31(15Q15.2) WILD-TYPE     27     28     23     10
D56V1, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                           33                             28
  CLUS_3                            6                             23
  CLUS_4                           11                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q15.2) MUTATED        7     33     18
  DEL PEAK 31(15Q15.2) WILD-TYPE     35     39     14
D56V2, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           33                             39
  CLUS_3                           18                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q15.2) MUTATED       35    112     25
  DEL PEAK 31(15Q15.2) WILD-TYPE    167     58     53
D56V3, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           35                            167
  CLUS_2                          112                             58
  CLUS_3                           25                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q15.2) MUTATED       64     26     22
  DEL PEAK 31(15Q15.2) WILD-TYPE     56     71     54
D56V4, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           64                             56
  CLUS_2                           26                             71
  CLUS_3                           22                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q15.2) MUTATED       42     47     38
  DEL PEAK 31(15Q15.2) WILD-TYPE     43     97     87
D56V5, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           42                             43
  CLUS_2                           47                             97
  CLUS_3                           38                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q15.2) MUTATED       21      8     18     12     16     26
  DEL PEAK 31(15Q15.2) WILD-TYPE     30     25     17     27     26     60
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 31(15Q15.2) MUTATED        5      8     13
  DEL PEAK 31(15Q15.2) WILD-TYPE     17     12     13
D56V6, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           21                             30
  CLUS_2                            8                             25
  CLUS_3                           18                             17
  CLUS_4                           12                             27
  CLUS_5                           16                             26
  CLUS_6                           26                             60
  CLUS_7                            5                             17
  CLUS_8                            8                             12
  CLUS_9                           13                             13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q15.2) MUTATED       63     19     33     56
  DEL PEAK 31(15Q15.2) WILD-TYPE     58     88     57     74
D56V7, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           63                             58
  CLUS_2                           19                             88
  CLUS_3                           33                             57
  CLUS_4                           56                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q15.2) MUTATED       41     50     12     63      5
  DEL PEAK 31(15Q15.2) WILD-TYPE     38     58     84     66     31
D56V8, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           41                             38
  CLUS_2                           50                             58
  CLUS_3                           12                             84
  CLUS_4                           63                             66
  CLUS_5                            5                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q15.2) MUTATED       58     24     66
  DEL PEAK 31(15Q15.2) WILD-TYPE    102     41    106
D56V9, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           58                            102
  CLUS_2                           24                             41
  CLUS_3                           66                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q15.2) MUTATED       47     17     34     50
  DEL PEAK 31(15Q15.2) WILD-TYPE     88     33     43     85
D56V10, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           47                             88
  CLUS_2                           17                             33
  CLUS_3                           34                             43
  CLUS_4                           50                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q15.2) MUTATED       18     12     11
  DEL PEAK 31(15Q15.2) WILD-TYPE     11     20     13
D56V11, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           18                             11
  CLUS_2                           12                             20
  CLUS_3                           11                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q15.2) MUTATED        9     11      7      8      6
  DEL PEAK 31(15Q15.2) WILD-TYPE      3     11     10     16      4
D56V12, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                            9                              3
  CLUS_2                           11                             11
  CLUS_3                            7                             10
  CLUS_4                            8                             16
  CLUS_5                            6                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 32(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q21.1) MUTATED       11     31      6     11
  DEL PEAK 32(15Q21.1) WILD-TYPE     24     30     23     10
D57V1, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           11                             24
  CLUS_2                           31                             30
  CLUS_3                            6                             23
  CLUS_4                           11                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q21.1) MUTATED       10     31     18
  DEL PEAK 32(15Q21.1) WILD-TYPE     32     41     14
D57V2, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                           31                             41
  CLUS_3                           18                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q21.1) MUTATED       35    109     25
  DEL PEAK 32(15Q21.1) WILD-TYPE    167     61     53
D57V3, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           35                            167
  CLUS_2                          109                             61
  CLUS_3                           25                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q21.1) MUTATED       61     25     22
  DEL PEAK 32(15Q21.1) WILD-TYPE     59     72     54
D57V4, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           61                             59
  CLUS_2                           25                             72
  CLUS_3                           22                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q21.1) MUTATED       40     48     39
  DEL PEAK 32(15Q21.1) WILD-TYPE     45     96     86
D57V5, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           40                             45
  CLUS_2                           48                             96
  CLUS_3                           39                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q21.1) MUTATED       20      7     18     13     17     27
  DEL PEAK 32(15Q21.1) WILD-TYPE     31     26     17     26     25     59
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 32(15Q21.1) MUTATED        5      7     13
  DEL PEAK 32(15Q21.1) WILD-TYPE     17     13     13
D57V6, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           20                             31
  CLUS_2                            7                             26
  CLUS_3                           18                             17
  CLUS_4                           13                             26
  CLUS_5                           17                             25
  CLUS_6                           27                             59
  CLUS_7                            5                             17
  CLUS_8                            7                             13
  CLUS_9                           13                             13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q21.1) MUTATED       61     18     32     57
  DEL PEAK 32(15Q21.1) WILD-TYPE     60     89     58     73
D57V7, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           61                             60
  CLUS_2                           18                             89
  CLUS_3                           32                             58
  CLUS_4                           57                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q21.1) MUTATED       39     49     11     61      8
  DEL PEAK 32(15Q21.1) WILD-TYPE     40     59     85     68     28
D57V8, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           39                             40
  CLUS_2                           49                             59
  CLUS_3                           11                             85
  CLUS_4                           61                             68
  CLUS_5                            8                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q21.1) MUTATED       57     24     66
  DEL PEAK 32(15Q21.1) WILD-TYPE    103     41    106
D57V9, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           57                            103
  CLUS_2                           24                             41
  CLUS_3                           66                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q21.1) MUTATED       46     17     32     52
  DEL PEAK 32(15Q21.1) WILD-TYPE     89     33     45     83
D57V10, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           46                             89
  CLUS_2                           17                             33
  CLUS_3                           32                             45
  CLUS_4                           52                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q21.1) MUTATED       18     12     10
  DEL PEAK 32(15Q21.1) WILD-TYPE     11     20     14
D57V11, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           18                             11
  CLUS_2                           12                             20
  CLUS_3                           10                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q21.1) MUTATED        9     11      6      8      6
  DEL PEAK 32(15Q21.1) WILD-TYPE      3     11     11     16      4
D57V12, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                            9                              3
  CLUS_2                           11                             11
  CLUS_3                            6                             11
  CLUS_4                            8                             16
  CLUS_5                            6                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 33(15Q22.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q22.33) MUTATED        8     31      3     10
  DEL PEAK 33(15Q22.33) WILD-TYPE     27     30     26     11
D58V1, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                             8                              27
  CLUS_2                            31                              30
  CLUS_3                             3                              26
  CLUS_4                            10                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q22.33) MUTATED        6     28     18
  DEL PEAK 33(15Q22.33) WILD-TYPE     36     44     14
D58V2, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                             6                              36
  CLUS_2                            28                              44
  CLUS_3                            18                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q22.33) MUTATED       29    109     23
  DEL PEAK 33(15Q22.33) WILD-TYPE    173     61     55
D58V3, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            29                             173
  CLUS_2                           109                              61
  CLUS_3                            23                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q22.33) MUTATED       62     23     23
  DEL PEAK 33(15Q22.33) WILD-TYPE     58     74     53
D58V4, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            62                              58
  CLUS_2                            23                              74
  CLUS_3                            23                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q22.33) MUTATED       35     45     40
  DEL PEAK 33(15Q22.33) WILD-TYPE     50     99     85
D58V5, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            35                              50
  CLUS_2                            45                              99
  CLUS_3                            40                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q22.33) MUTATED       21      6     16     13     15     26
  DEL PEAK 33(15Q22.33) WILD-TYPE     30     27     19     26     27     60
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 33(15Q22.33) MUTATED        5      6     12
  DEL PEAK 33(15Q22.33) WILD-TYPE     17     14     14
D58V6, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            21                              30
  CLUS_2                             6                              27
  CLUS_3                            16                              19
  CLUS_4                            13                              26
  CLUS_5                            15                              27
  CLUS_6                            26                              60
  CLUS_7                             5                              17
  CLUS_8                             6                              14
  CLUS_9                            12                              14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q22.33) MUTATED       61     15     32     52
  DEL PEAK 33(15Q22.33) WILD-TYPE     60     92     58     78
D58V7, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            61                              60
  CLUS_2                            15                              92
  CLUS_3                            32                              58
  CLUS_4                            52                              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q22.33) MUTATED       41     47     11     58      3
  DEL PEAK 33(15Q22.33) WILD-TYPE     38     61     85     71     33
D58V8, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            41                              38
  CLUS_2                            47                              61
  CLUS_3                            11                              85
  CLUS_4                            58                              71
  CLUS_5                             3                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q22.33) MUTATED       54     25     60
  DEL PEAK 33(15Q22.33) WILD-TYPE    106     40    112
D58V9, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            54                             106
  CLUS_2                            25                              40
  CLUS_3                            60                             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q22.33) MUTATED       45     18     30     46
  DEL PEAK 33(15Q22.33) WILD-TYPE     90     32     47     89
D58V10, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            45                              90
  CLUS_2                            18                              32
  CLUS_3                            30                              47
  CLUS_4                            46                              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q22.33) MUTATED       18     12      9
  DEL PEAK 33(15Q22.33) WILD-TYPE     11     20     15
D58V11, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            18                              11
  CLUS_2                            12                              20
  CLUS_3                             9                              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q22.33) MUTATED        9     11      5      8      6
  DEL PEAK 33(15Q22.33) WILD-TYPE      3     11     12     16      4
D58V12, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                             9                               3
  CLUS_2                            11                              11
  CLUS_3                             5                              12
  CLUS_4                             8                              16
  CLUS_5                             6                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 34(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        3     11      1      3
  DEL PEAK 34(16P13.3) WILD-TYPE     32     50     28     18
D59V1, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            3                             32
  CLUS_2                           11                             50
  CLUS_3                            1                             28
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED        3      7      8
  DEL PEAK 34(16P13.3) WILD-TYPE     39     65     24
D59V2, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                            7                             65
  CLUS_3                            8                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       18     28     10
  DEL PEAK 34(16P13.3) WILD-TYPE    184    142     68
D59V3, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           18                            184
  CLUS_2                           28                            142
  CLUS_3                           10                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       21      8      9
  DEL PEAK 34(16P13.3) WILD-TYPE     99     89     67
D59V4, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           21                             99
  CLUS_2                            8                             89
  CLUS_3                            9                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED        9     18     15
  DEL PEAK 34(16P13.3) WILD-TYPE     76    126    110
D59V5, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            9                             76
  CLUS_2                           18                            126
  CLUS_3                           15                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16P13.3) MUTATED        7      1      3      4      7     12
  DEL PEAK 34(16P13.3) WILD-TYPE     44     32     32     35     35     74
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 34(16P13.3) MUTATED        3      2      3
  DEL PEAK 34(16P13.3) WILD-TYPE     19     18     23
D59V6, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            7                             44
  CLUS_2                            1                             32
  CLUS_3                            3                             32
  CLUS_4                            4                             35
  CLUS_5                            7                             35
  CLUS_6                           12                             74
  CLUS_7                            3                             19
  CLUS_8                            2                             18
  CLUS_9                            3                             23
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED       22      7     10     17
  DEL PEAK 34(16P13.3) WILD-TYPE     99    100     80    113
D59V7, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           22                             99
  CLUS_2                            7                            100
  CLUS_3                           10                             80
  CLUS_4                           17                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16P13.3) MUTATED       11     19      5     18      3
  DEL PEAK 34(16P13.3) WILD-TYPE     68     89     91    111     33
D59V8, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           11                             68
  CLUS_2                           19                             89
  CLUS_3                            5                             91
  CLUS_4                           18                            111
  CLUS_5                            3                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       18      6     21
  DEL PEAK 34(16P13.3) WILD-TYPE    142     59    151
D59V9, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           18                            142
  CLUS_2                            6                             59
  CLUS_3                           21                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED       15      6      6     18
  DEL PEAK 34(16P13.3) WILD-TYPE    120     44     71    117
D59V10, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           15                            120
  CLUS_2                            6                             44
  CLUS_3                            6                             71
  CLUS_4                           18                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED        2      4      1
  DEL PEAK 34(16P13.3) WILD-TYPE     27     28     23
D59V11, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            2                             27
  CLUS_2                            4                             28
  CLUS_3                            1                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16P13.3) MUTATED        1      2      1      2      1
  DEL PEAK 34(16P13.3) WILD-TYPE     11     20     16     22      9
D59V12, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            1                             11
  CLUS_2                            2                             20
  CLUS_3                            1                             16
  CLUS_4                            2                             22
  CLUS_5                            1                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 35(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q23.1) MUTATED        9      7      4      2
  DEL PEAK 35(16Q23.1) WILD-TYPE     26     54     25     19
D60V1, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            9                             26
  CLUS_2                            7                             54
  CLUS_3                            4                             25
  CLUS_4                            2                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       13      6      3
  DEL PEAK 35(16Q23.1) WILD-TYPE     29     66     29
D60V2, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                            6                             66
  CLUS_3                            3                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       32     19     10
  DEL PEAK 35(16Q23.1) WILD-TYPE    170    151     68
D60V3, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           32                            170
  CLUS_2                           19                            151
  CLUS_3                           10                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       14     15      9
  DEL PEAK 35(16Q23.1) WILD-TYPE    106     82     67
D60V4, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           14                            106
  CLUS_2                           15                             82
  CLUS_3                            9                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       11     18     18
  DEL PEAK 35(16Q23.1) WILD-TYPE     74    126    107
D60V5, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           11                             74
  CLUS_2                           18                            126
  CLUS_3                           18                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16Q23.1) MUTATED        8      4      3      8      6     13
  DEL PEAK 35(16Q23.1) WILD-TYPE     43     29     32     31     36     73
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 35(16Q23.1) MUTATED        3      0      2
  DEL PEAK 35(16Q23.1) WILD-TYPE     19     20     24
D60V6, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            8                             43
  CLUS_2                            4                             29
  CLUS_3                            3                             32
  CLUS_4                            8                             31
  CLUS_5                            6                             36
  CLUS_6                           13                             73
  CLUS_7                            3                             19
  CLUS_8                            0                             20
  CLUS_9                            2                             24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q23.1) MUTATED       17     18      7     19
  DEL PEAK 35(16Q23.1) WILD-TYPE    104     89     83    111
D60V7, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           17                            104
  CLUS_2                           18                             89
  CLUS_3                            7                             83
  CLUS_4                           19                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q23.1) MUTATED        9     13     15     12     12
  DEL PEAK 35(16Q23.1) WILD-TYPE     70     95     81    117     24
D60V8, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            9                             70
  CLUS_2                           13                             95
  CLUS_3                           15                             81
  CLUS_4                           12                            117
  CLUS_5                           12                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       21      5     22
  DEL PEAK 35(16Q23.1) WILD-TYPE    139     60    150
D60V9, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           21                            139
  CLUS_2                            5                             60
  CLUS_3                           22                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q23.1) MUTATED       18      3      8     19
  DEL PEAK 35(16Q23.1) WILD-TYPE    117     47     69    116
D60V10, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           18                            117
  CLUS_2                            3                             47
  CLUS_3                            8                             69
  CLUS_4                           19                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED        4      3      4
  DEL PEAK 35(16Q23.1) WILD-TYPE     25     29     20
D60V11, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            4                             25
  CLUS_2                            3                             29
  CLUS_3                            4                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q23.1) MUTATED        1      1      4      4      1
  DEL PEAK 35(16Q23.1) WILD-TYPE     11     21     13     20      9
D60V12, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            1                             11
  CLUS_2                            1                             21
  CLUS_3                            4                             13
  CLUS_4                            4                             20
  CLUS_5                            1                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 36(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P12) MUTATED       10     49      8     15
  DEL PEAK 36(17P12) WILD-TYPE     25     12     21      6
D61V1, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         10                           25
  CLUS_2                         49                           12
  CLUS_3                          8                           21
  CLUS_4                         15                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P12) MUTATED        9     47     26
  DEL PEAK 36(17P12) WILD-TYPE     33     25      6
D61V2, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                          9                           33
  CLUS_2                         47                           25
  CLUS_3                         26                            6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P12) MUTATED       53    147     54
  DEL PEAK 36(17P12) WILD-TYPE    149     23     24
D61V3, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         53                          149
  CLUS_2                        147                           23
  CLUS_3                         54                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P12) MUTATED      103     34     31
  DEL PEAK 36(17P12) WILD-TYPE     17     63     45
D61V4, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                        103                           17
  CLUS_2                         34                           63
  CLUS_3                         31                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P12) MUTATED       54     83     59
  DEL PEAK 36(17P12) WILD-TYPE     31     61     66
D61V5, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         54                           31
  CLUS_2                         83                           61
  CLUS_3                         59                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 36(17P12) MUTATED       35     14     26     22     23     37      8
  DEL PEAK 36(17P12) WILD-TYPE     16     19      9     17     19     49     14
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 36(17P12) MUTATED       10     21
  DEL PEAK 36(17P12) WILD-TYPE     10      5
D61V6, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         35                           16
  CLUS_2                         14                           19
  CLUS_3                         26                            9
  CLUS_4                         22                           17
  CLUS_5                         23                           19
  CLUS_6                         37                           49
  CLUS_7                          8                           14
  CLUS_8                         10                           10
  CLUS_9                         21                            5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P12) MUTATED      101     29     46     77
  DEL PEAK 36(17P12) WILD-TYPE     20     78     44     53
D61V7, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                        101                           20
  CLUS_2                         29                           78
  CLUS_3                         46                           44
  CLUS_4                         77                           53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(17P12) MUTATED       55     83     20     91      4
  DEL PEAK 36(17P12) WILD-TYPE     24     25     76     38     32
D61V8, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         55                           24
  CLUS_2                         83                           25
  CLUS_3                         20                           76
  CLUS_4                         91                           38
  CLUS_5                          4                           32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P12) MUTATED       94     34     96
  DEL PEAK 36(17P12) WILD-TYPE     66     31     76
D61V9, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         94                           66
  CLUS_2                         34                           31
  CLUS_3                         96                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P12) MUTATED       74     24     55     71
  DEL PEAK 36(17P12) WILD-TYPE     61     26     22     64
D61V10, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         74                           61
  CLUS_2                         24                           26
  CLUS_3                         55                           22
  CLUS_4                         71                           64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P12) MUTATED       20     18     16
  DEL PEAK 36(17P12) WILD-TYPE      9     14      8
D61V11, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         20                            9
  CLUS_2                         18                           14
  CLUS_3                         16                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(17P12) MUTATED        8     17     11      8     10
  DEL PEAK 36(17P12) WILD-TYPE      4      5      6     16      0
D61V12, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                          8                            4
  CLUS_2                         17                            5
  CLUS_3                         11                            6
  CLUS_4                          8                           16
  CLUS_5                         10                            0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 37(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17Q24.3) MUTATED        4     14      1      3
  DEL PEAK 37(17Q24.3) WILD-TYPE     31     47     28     18
D62V1, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                           14                             47
  CLUS_3                            1                             28
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17Q24.3) MUTATED        4     13      5
  DEL PEAK 37(17Q24.3) WILD-TYPE     38     59     27
D62V2, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                           13                             59
  CLUS_3                            5                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17Q24.3) MUTATED       20     38     11
  DEL PEAK 37(17Q24.3) WILD-TYPE    182    132     67
D62V3, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           20                            182
  CLUS_2                           38                            132
  CLUS_3                           11                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17Q24.3) MUTATED       19     11     16
  DEL PEAK 37(17Q24.3) WILD-TYPE    101     86     60
D62V4, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           19                            101
  CLUS_2                           11                             86
  CLUS_3                           16                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17Q24.3) MUTATED       15     20     14
  DEL PEAK 37(17Q24.3) WILD-TYPE     70    124    111
D62V5, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           15                             70
  CLUS_2                           20                            124
  CLUS_3                           14                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(17Q24.3) MUTATED        9      5      7      3      3      9
  DEL PEAK 37(17Q24.3) WILD-TYPE     42     28     28     36     39     77
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 37(17Q24.3) MUTATED        4      3      6
  DEL PEAK 37(17Q24.3) WILD-TYPE     18     17     20
D62V6, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            9                             42
  CLUS_2                            5                             28
  CLUS_3                            7                             28
  CLUS_4                            3                             36
  CLUS_5                            3                             39
  CLUS_6                            9                             77
  CLUS_7                            4                             18
  CLUS_8                            3                             17
  CLUS_9                            6                             20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17Q24.3) MUTATED       26      9     12     22
  DEL PEAK 37(17Q24.3) WILD-TYPE     95     98     78    108
D62V7, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           26                             95
  CLUS_2                            9                             98
  CLUS_3                           12                             78
  CLUS_4                           22                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(17Q24.3) MUTATED       13     22     10     22      2
  DEL PEAK 37(17Q24.3) WILD-TYPE     66     86     86    107     34
D62V8, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           13                             66
  CLUS_2                           22                             86
  CLUS_3                           10                             86
  CLUS_4                           22                            107
  CLUS_5                            2                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17Q24.3) MUTATED       24     12     25
  DEL PEAK 37(17Q24.3) WILD-TYPE    136     53    147
D62V9, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           24                            136
  CLUS_2                           12                             53
  CLUS_3                           25                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17Q24.3) MUTATED       20      7     13     21
  DEL PEAK 37(17Q24.3) WILD-TYPE    115     43     64    114
D62V10, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           20                            115
  CLUS_2                            7                             43
  CLUS_3                           13                             64
  CLUS_4                           21                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17Q24.3) MUTATED        6      9      5
  DEL PEAK 37(17Q24.3) WILD-TYPE     23     23     19
D62V11, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            9                             23
  CLUS_3                            5                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(17Q24.3) MUTATED        4      3      3      6      4
  DEL PEAK 37(17Q24.3) WILD-TYPE      8     19     14     18      6
D62V12, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            3                             19
  CLUS_3                            3                             14
  CLUS_4                            6                             18
  CLUS_5                            4                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 38(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(18P11.31) MUTATED        6     50      7     15
  DEL PEAK 38(18P11.31) WILD-TYPE     29     11     22      6
D63V1, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             6                              29
  CLUS_2                            50                              11
  CLUS_3                             7                              22
  CLUS_4                            15                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18P11.31) MUTATED        5     47     26
  DEL PEAK 38(18P11.31) WILD-TYPE     37     25      6
D63V2, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             5                              37
  CLUS_2                            47                              25
  CLUS_3                            26                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18P11.31) MUTATED       47    154     45
  DEL PEAK 38(18P11.31) WILD-TYPE    155     16     33
D63V3, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            47                             155
  CLUS_2                           154                              16
  CLUS_3                            45                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18P11.31) MUTATED      105     27     33
  DEL PEAK 38(18P11.31) WILD-TYPE     15     70     43
D63V4, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                           105                              15
  CLUS_2                            27                              70
  CLUS_3                            33                              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18P11.31) MUTATED       49     81     59
  DEL PEAK 38(18P11.31) WILD-TYPE     36     63     66
D63V5, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            49                              36
  CLUS_2                            81                              63
  CLUS_3                            59                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(18P11.31) MUTATED       29     19     23     19     23     35
  DEL PEAK 38(18P11.31) WILD-TYPE     22     14     12     20     19     51
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 38(18P11.31) MUTATED        8     11     22
  DEL PEAK 38(18P11.31) WILD-TYPE     14      9      4
D63V6, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            29                              22
  CLUS_2                            19                              14
  CLUS_3                            23                              12
  CLUS_4                            19                              20
  CLUS_5                            23                              19
  CLUS_6                            35                              51
  CLUS_7                             8                              14
  CLUS_8                            11                               9
  CLUS_9                            22                               4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(18P11.31) MUTATED      106     21     46     72
  DEL PEAK 38(18P11.31) WILD-TYPE     15     86     44     58
D63V7, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                           106                              15
  CLUS_2                            21                              86
  CLUS_3                            46                              44
  CLUS_4                            72                              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(18P11.31) MUTATED       61     81     12     89      2
  DEL PEAK 38(18P11.31) WILD-TYPE     18     27     84     40     34
D63V8, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            61                              18
  CLUS_2                            81                              27
  CLUS_3                            12                              84
  CLUS_4                            89                              40
  CLUS_5                             2                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18P11.31) MUTATED       88     33     91
  DEL PEAK 38(18P11.31) WILD-TYPE     72     32     81
D63V9, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            88                              72
  CLUS_2                            33                              32
  CLUS_3                            91                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(18P11.31) MUTATED       68     23     54     67
  DEL PEAK 38(18P11.31) WILD-TYPE     67     27     23     68
D63V10, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            68                              67
  CLUS_2                            23                              27
  CLUS_3                            54                              23
  CLUS_4                            67                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18P11.31) MUTATED       21     16     12
  DEL PEAK 38(18P11.31) WILD-TYPE      8     16     12
D63V11, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            21                               8
  CLUS_2                            16                              16
  CLUS_3                            12                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(18P11.31) MUTATED       10     13     10      7      9
  DEL PEAK 38(18P11.31) WILD-TYPE      2      9      7     17      1
D63V12, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            10                               2
  CLUS_2                            13                               9
  CLUS_3                            10                               7
  CLUS_4                             7                              17
  CLUS_5                             9                               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 39(18Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18Q12.2) MUTATED        8     53      9     16
  DEL PEAK 39(18Q12.2) WILD-TYPE     27      8     20      5
D64V1, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                           53                              8
  CLUS_3                            9                             20
  CLUS_4                           16                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q12.2) MUTATED        7     51     28
  DEL PEAK 39(18Q12.2) WILD-TYPE     35     21      4
D64V2, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           51                             21
  CLUS_3                           28                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q12.2) MUTATED       55    159     60
  DEL PEAK 39(18Q12.2) WILD-TYPE    147     11     18
D64V3, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           55                            147
  CLUS_2                          159                             11
  CLUS_3                           60                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q12.2) MUTATED      112     35     36
  DEL PEAK 39(18Q12.2) WILD-TYPE      8     62     40
D64V4, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                          112                              8
  CLUS_2                           35                             62
  CLUS_3                           36                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q12.2) MUTATED       52     89     67
  DEL PEAK 39(18Q12.2) WILD-TYPE     33     55     58
D64V5, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           52                             33
  CLUS_2                           89                             55
  CLUS_3                           67                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(18Q12.2) MUTATED       36     17     25     23     26     38
  DEL PEAK 39(18Q12.2) WILD-TYPE     15     16     10     16     16     48
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 39(18Q12.2) MUTATED        9     13     21
  DEL PEAK 39(18Q12.2) WILD-TYPE     13      7      5
D64V6, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           36                             15
  CLUS_2                           17                             16
  CLUS_3                           25                             10
  CLUS_4                           23                             16
  CLUS_5                           26                             16
  CLUS_6                           38                             48
  CLUS_7                            9                             13
  CLUS_8                           13                              7
  CLUS_9                           21                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18Q12.2) MUTATED      108     28     55     82
  DEL PEAK 39(18Q12.2) WILD-TYPE     13     79     35     48
D64V7, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                          108                             13
  CLUS_2                           28                             79
  CLUS_3                           55                             35
  CLUS_4                           82                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(18Q12.2) MUTATED       67     87     19     97      3
  DEL PEAK 39(18Q12.2) WILD-TYPE     12     21     77     32     33
D64V8, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           67                             12
  CLUS_2                           87                             21
  CLUS_3                           19                             77
  CLUS_4                           97                             32
  CLUS_5                            3                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q12.2) MUTATED       98     38    103
  DEL PEAK 39(18Q12.2) WILD-TYPE     62     27     69
D64V9, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           98                             62
  CLUS_2                           38                             27
  CLUS_3                          103                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18Q12.2) MUTATED       79     28     58     74
  DEL PEAK 39(18Q12.2) WILD-TYPE     56     22     19     61
D64V10, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           79                             56
  CLUS_2                           28                             22
  CLUS_3                           58                             19
  CLUS_4                           74                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q12.2) MUTATED       23     18     17
  DEL PEAK 39(18Q12.2) WILD-TYPE      6     14      7
D64V11, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           23                              6
  CLUS_2                           18                             14
  CLUS_3                           17                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(18Q12.2) MUTATED       10     17     11     10     10
  DEL PEAK 39(18Q12.2) WILD-TYPE      2      5      6     14      0
D64V12, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                           17                              5
  CLUS_3                           11                              6
  CLUS_4                           10                             14
  CLUS_5                           10                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 40(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q21.2) MUTATED        8     53     10     16
  DEL PEAK 40(18Q21.2) WILD-TYPE     27      8     19      5
D65V1, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                           53                              8
  CLUS_3                           10                             19
  CLUS_4                           16                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q21.2) MUTATED        7     52     28
  DEL PEAK 40(18Q21.2) WILD-TYPE     35     20      4
D65V2, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           52                             20
  CLUS_3                           28                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q21.2) MUTATED       63    161     63
  DEL PEAK 40(18Q21.2) WILD-TYPE    139      9     15
D65V3, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           63                            139
  CLUS_2                          161                              9
  CLUS_3                           63                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q21.2) MUTATED      114     45     36
  DEL PEAK 40(18Q21.2) WILD-TYPE      6     52     40
D65V4, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                          114                              6
  CLUS_2                           45                             52
  CLUS_3                           36                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q21.2) MUTATED       55     96     70
  DEL PEAK 40(18Q21.2) WILD-TYPE     30     48     55
D65V5, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           55                             30
  CLUS_2                           96                             48
  CLUS_3                           70                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18Q21.2) MUTATED       38     18     25     26     27     41
  DEL PEAK 40(18Q21.2) WILD-TYPE     13     15     10     13     15     45
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 40(18Q21.2) MUTATED       10     15     21
  DEL PEAK 40(18Q21.2) WILD-TYPE     12      5      5
D65V6, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           38                             13
  CLUS_2                           18                             15
  CLUS_3                           25                             10
  CLUS_4                           26                             13
  CLUS_5                           27                             15
  CLUS_6                           41                             45
  CLUS_7                           10                             12
  CLUS_8                           15                              5
  CLUS_9                           21                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q21.2) MUTATED      109     37     58     82
  DEL PEAK 40(18Q21.2) WILD-TYPE     12     70     32     48
D65V7, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                          109                             12
  CLUS_2                           37                             70
  CLUS_3                           58                             32
  CLUS_4                           82                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(18Q21.2) MUTATED       69     89     27     97      4
  DEL PEAK 40(18Q21.2) WILD-TYPE     10     19     69     32     32
D65V8, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           69                             10
  CLUS_2                           89                             19
  CLUS_3                           27                             69
  CLUS_4                           97                             32
  CLUS_5                            4                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q21.2) MUTATED      108     39    105
  DEL PEAK 40(18Q21.2) WILD-TYPE     52     26     67
D65V9, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                          108                             52
  CLUS_2                           39                             26
  CLUS_3                          105                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q21.2) MUTATED       86     30     59     77
  DEL PEAK 40(18Q21.2) WILD-TYPE     49     20     18     58
D65V10, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           86                             49
  CLUS_2                           30                             20
  CLUS_3                           59                             18
  CLUS_4                           77                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q21.2) MUTATED       24     19     19
  DEL PEAK 40(18Q21.2) WILD-TYPE      5     13      5
D65V11, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           24                              5
  CLUS_2                           19                             13
  CLUS_3                           19                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(18Q21.2) MUTATED       10     17     14     11     10
  DEL PEAK 40(18Q21.2) WILD-TYPE      2      5      3     13      0
D65V12, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                           17                              5
  CLUS_3                           14                              3
  CLUS_4                           11                             13
  CLUS_5                           10                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 41(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(19P13.3) MUTATED        4     17      3      3
  DEL PEAK 41(19P13.3) WILD-TYPE     31     44     26     18
D66V1, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                           17                             44
  CLUS_3                            3                             26
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19P13.3) MUTATED        4     14      9
  DEL PEAK 41(19P13.3) WILD-TYPE     38     58     23
D66V2, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                           14                             58
  CLUS_3                            9                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19P13.3) MUTATED       15     33     15
  DEL PEAK 41(19P13.3) WILD-TYPE    187    137     63
D66V3, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           15                            187
  CLUS_2                           33                            137
  CLUS_3                           15                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19P13.3) MUTATED       16      8     10
  DEL PEAK 41(19P13.3) WILD-TYPE    104     89     66
D66V4, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           16                            104
  CLUS_2                            8                             89
  CLUS_3                           10                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19P13.3) MUTATED        9     15     18
  DEL PEAK 41(19P13.3) WILD-TYPE     76    129    107
D66V5, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            9                             76
  CLUS_2                           15                            129
  CLUS_3                           18                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(19P13.3) MUTATED        6      3      4      6      2     15
  DEL PEAK 41(19P13.3) WILD-TYPE     45     30     31     33     40     71
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 41(19P13.3) MUTATED        1      2      3
  DEL PEAK 41(19P13.3) WILD-TYPE     21     18     23
D66V6, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            6                             45
  CLUS_2                            3                             30
  CLUS_3                            4                             31
  CLUS_4                            6                             33
  CLUS_5                            2                             40
  CLUS_6                           15                             71
  CLUS_7                            1                             21
  CLUS_8                            2                             18
  CLUS_9                            3                             23
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(19P13.3) MUTATED       24      5     13     21
  DEL PEAK 41(19P13.3) WILD-TYPE     97    102     77    109
D66V7, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           24                             97
  CLUS_2                            5                            102
  CLUS_3                           13                             77
  CLUS_4                           21                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(19P13.3) MUTATED       10     20      5     27      1
  DEL PEAK 41(19P13.3) WILD-TYPE     69     88     91    102     35
D66V8, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           10                             69
  CLUS_2                           20                             88
  CLUS_3                            5                             91
  CLUS_4                           27                            102
  CLUS_5                            1                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19P13.3) MUTATED       22      7     27
  DEL PEAK 41(19P13.3) WILD-TYPE    138     58    145
D66V9, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           22                            138
  CLUS_2                            7                             58
  CLUS_3                           27                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(19P13.3) MUTATED       18      1     17     20
  DEL PEAK 41(19P13.3) WILD-TYPE    117     49     60    115
D66V10, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           18                            117
  CLUS_2                            1                             49
  CLUS_3                           17                             60
  CLUS_4                           20                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19P13.3) MUTATED        5      3      5
  DEL PEAK 41(19P13.3) WILD-TYPE     24     29     19
D66V11, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                            3                             29
  CLUS_3                            5                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(19P13.3) MUTATED        3      3      4      1      2
  DEL PEAK 41(19P13.3) WILD-TYPE      9     19     13     23      8
D66V12, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            3                              9
  CLUS_2                            3                             19
  CLUS_3                            4                             13
  CLUS_4                            1                             23
  CLUS_5                            2                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 42(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(20P12.1) MUTATED        3     17      3      2
  DEL PEAK 42(20P12.1) WILD-TYPE     32     44     26     19
D67V1, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                            3                             32
  CLUS_2                           17                             44
  CLUS_3                            3                             26
  CLUS_4                            2                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P12.1) MUTATED        3     12     10
  DEL PEAK 42(20P12.1) WILD-TYPE     39     60     22
D67V2, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           12                             60
  CLUS_3                           10                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P12.1) MUTATED       19     47     20
  DEL PEAK 42(20P12.1) WILD-TYPE    183    123     58
D67V3, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           19                            183
  CLUS_2                           47                            123
  CLUS_3                           20                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P12.1) MUTATED       39      9     12
  DEL PEAK 42(20P12.1) WILD-TYPE     81     88     64
D67V4, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           39                             81
  CLUS_2                            9                             88
  CLUS_3                           12                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P12.1) MUTATED       10     33     28
  DEL PEAK 42(20P12.1) WILD-TYPE     75    111     97
D67V5, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           10                             75
  CLUS_2                           33                            111
  CLUS_3                           28                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(20P12.1) MUTATED       12      1     11     11      6     14
  DEL PEAK 42(20P12.1) WILD-TYPE     39     32     24     28     36     72
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 42(20P12.1) MUTATED        2      6      8
  DEL PEAK 42(20P12.1) WILD-TYPE     20     14     18
D67V6, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           12                             39
  CLUS_2                            1                             32
  CLUS_3                           11                             24
  CLUS_4                           11                             28
  CLUS_5                            6                             36
  CLUS_6                           14                             72
  CLUS_7                            2                             20
  CLUS_8                            6                             14
  CLUS_9                            8                             18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(20P12.1) MUTATED       44      7     15     20
  DEL PEAK 42(20P12.1) WILD-TYPE     77    100     75    110
D67V7, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           44                             77
  CLUS_2                            7                            100
  CLUS_3                           15                             75
  CLUS_4                           20                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(20P12.1) MUTATED       24     30      5     23      4
  DEL PEAK 42(20P12.1) WILD-TYPE     55     78     91    106     32
D67V8, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           24                             55
  CLUS_2                           30                             78
  CLUS_3                            5                             91
  CLUS_4                           23                            106
  CLUS_5                            4                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P12.1) MUTATED       38     12     25
  DEL PEAK 42(20P12.1) WILD-TYPE    122     53    147
D67V9, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           38                            122
  CLUS_2                           12                             53
  CLUS_3                           25                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(20P12.1) MUTATED       26     12     22     15
  DEL PEAK 42(20P12.1) WILD-TYPE    109     38     55    120
D67V10, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           26                            109
  CLUS_2                           12                             38
  CLUS_3                           22                             55
  CLUS_4                           15                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P12.1) MUTATED        5      7      6
  DEL PEAK 42(20P12.1) WILD-TYPE     24     25     18
D67V11, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                            7                             25
  CLUS_3                            6                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(20P12.1) MUTATED        2      5      6      1      4
  DEL PEAK 42(20P12.1) WILD-TYPE     10     17     11     23      6
D67V12, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            5                             17
  CLUS_3                            6                             11
  CLUS_4                            1                             23
  CLUS_5                            4                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 43(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(21Q11.2) MUTATED        7     29      6      6
  DEL PEAK 43(21Q11.2) WILD-TYPE     28     32     23     15
D68V1, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                            7                             28
  CLUS_2                           29                             32
  CLUS_3                            6                             23
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED        8     27     13
  DEL PEAK 43(21Q11.2) WILD-TYPE     34     45     19
D68V2, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           27                             45
  CLUS_3                           13                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       42     82     17
  DEL PEAK 43(21Q11.2) WILD-TYPE    160     88     61
D68V3, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           42                            160
  CLUS_2                           82                             88
  CLUS_3                           17                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       49     21     20
  DEL PEAK 43(21Q11.2) WILD-TYPE     71     76     56
D68V4, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           49                             71
  CLUS_2                           21                             76
  CLUS_3                           20                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       25     47     38
  DEL PEAK 43(21Q11.2) WILD-TYPE     60     97     87
D68V5, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           25                             60
  CLUS_2                           47                             97
  CLUS_3                           38                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(21Q11.2) MUTATED       21     10     16     11     14     21
  DEL PEAK 43(21Q11.2) WILD-TYPE     30     23     19     28     28     65
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 43(21Q11.2) MUTATED        5      4      8
  DEL PEAK 43(21Q11.2) WILD-TYPE     17     16     18
D68V6, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           21                             30
  CLUS_2                           10                             23
  CLUS_3                           16                             19
  CLUS_4                           11                             28
  CLUS_5                           14                             28
  CLUS_6                           21                             65
  CLUS_7                            5                             17
  CLUS_8                            4                             16
  CLUS_9                            8                             18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(21Q11.2) MUTATED       57     17     26     40
  DEL PEAK 43(21Q11.2) WILD-TYPE     64     90     64     90
D68V7, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           57                             64
  CLUS_2                           17                             90
  CLUS_3                           26                             64
  CLUS_4                           40                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(21Q11.2) MUTATED       35     35     18     47      5
  DEL PEAK 43(21Q11.2) WILD-TYPE     44     73     78     82     31
D68V8, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           35                             44
  CLUS_2                           35                             73
  CLUS_3                           18                             78
  CLUS_4                           47                             82
  CLUS_5                            5                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       48     21     53
  DEL PEAK 43(21Q11.2) WILD-TYPE    112     44    119
D68V9, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           48                            112
  CLUS_2                           21                             44
  CLUS_3                           53                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(21Q11.2) MUTATED       41     14     32     35
  DEL PEAK 43(21Q11.2) WILD-TYPE     94     36     45    100
D68V10, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           41                             94
  CLUS_2                           14                             36
  CLUS_3                           32                             45
  CLUS_4                           35                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       13     11     10
  DEL PEAK 43(21Q11.2) WILD-TYPE     16     21     14
D68V11, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           13                             16
  CLUS_2                           11                             21
  CLUS_3                           10                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(21Q11.2) MUTATED        6      9      7      6      6
  DEL PEAK 43(21Q11.2) WILD-TYPE      6     13     10     18      4
D68V12, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                            6                              6
  CLUS_2                            9                             13
  CLUS_3                            7                             10
  CLUS_4                            6                             18
  CLUS_5                            6                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 44(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED        8     34      5     10
  DEL PEAK 44(22Q13.32) WILD-TYPE     27     27     24     11
D69V1, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                             8                              27
  CLUS_2                            34                              27
  CLUS_3                             5                              24
  CLUS_4                            10                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED        6     35     16
  DEL PEAK 44(22Q13.32) WILD-TYPE     36     37     16
D69V2, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                             6                              36
  CLUS_2                            35                              37
  CLUS_3                            16                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       40     98     22
  DEL PEAK 44(22Q13.32) WILD-TYPE    162     72     56
D69V3, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            40                             162
  CLUS_2                            98                              72
  CLUS_3                            22                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       50     21     28
  DEL PEAK 44(22Q13.32) WILD-TYPE     70     76     48
D69V4, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            50                              70
  CLUS_2                            21                              76
  CLUS_3                            28                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       31     55     34
  DEL PEAK 44(22Q13.32) WILD-TYPE     54     89     91
D69V5, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            31                              54
  CLUS_2                            55                              89
  CLUS_3                            34                              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(22Q13.32) MUTATED       17      7     23     10     14     25
  DEL PEAK 44(22Q13.32) WILD-TYPE     34     26     12     29     28     61
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 44(22Q13.32) MUTATED        7      7     10
  DEL PEAK 44(22Q13.32) WILD-TYPE     15     13     16
D69V6, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            17                              34
  CLUS_2                             7                              26
  CLUS_3                            23                              12
  CLUS_4                            10                              29
  CLUS_5                            14                              28
  CLUS_6                            25                              61
  CLUS_7                             7                              15
  CLUS_8                             7                              13
  CLUS_9                            10                              16
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       56     18     32     53
  DEL PEAK 44(22Q13.32) WILD-TYPE     65     89     58     77
D69V7, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            56                              65
  CLUS_2                            18                              89
  CLUS_3                            32                              58
  CLUS_4                            53                              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(22Q13.32) MUTATED       37     45     13     61      3
  DEL PEAK 44(22Q13.32) WILD-TYPE     42     63     83     68     33
D69V8, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            37                              42
  CLUS_2                            45                              63
  CLUS_3                            13                              83
  CLUS_4                            61                              68
  CLUS_5                             3                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       49     25     62
  DEL PEAK 44(22Q13.32) WILD-TYPE    111     40    110
D69V9, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            49                             111
  CLUS_2                            25                              40
  CLUS_3                            62                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       44     15     29     48
  DEL PEAK 44(22Q13.32) WILD-TYPE     91     35     48     87
D69V10, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            44                              91
  CLUS_2                            15                              35
  CLUS_3                            29                              48
  CLUS_4                            48                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       14     14      9
  DEL PEAK 44(22Q13.32) WILD-TYPE     15     18     15
D69V11, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            14                              15
  CLUS_2                            14                              18
  CLUS_3                             9                              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(22Q13.32) MUTATED        6     11      6      8      6
  DEL PEAK 44(22Q13.32) WILD-TYPE      6     11     11     16      4
D69V12, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                             6                               6
  CLUS_2                            11                              11
  CLUS_3                             6                              11
  CLUS_4                             8                              16
  CLUS_5                             6                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
