[1] "ofn"            "-oTCOADREAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/COADREAD-TP/20147373/COADREAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/COADREAD-TP/19781253/transformed.cor.cli.txt"

nPatients in clinical file=628, in cluster file=615, common to both=615
[1]  73 615
[1] "AMP PEAK  1(1Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE 
                          145                           470 
  AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE 
                          145                           470 
[1] "AMP PEAK  2(2Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE 
                          141                           474 
  AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE 
                          141                           474 
[1] "AMP PEAK  3(5P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE 
                        119                         496 
  AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE 
                        119                         496 
[1] "AMP PEAK  4(5Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE 
                           66                           549 
  AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE 
                           66                           549 
[1] "AMP PEAK  5(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                          154                           461 
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                          154                           461 
[1] "AMP PEAK  6(7P21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE 
                          363                           252 
  AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE 
                          363                           252 
[1] "AMP PEAK  7(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE 
                           211                            404 
  AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE 
                           211                            404 
[1] "AMP PEAK  8(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE 
                           256                            359 
  AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE 
                           256                            359 
[1] "AMP PEAK  9(8Q12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE 
                          331                           284 
  AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE 
                          331                           284 
[1] "AMP PEAK 10(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE 
                           368                            247 
  AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE 
                           368                            247 
[1] "AMP PEAK 11(10Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE 
                            40                            575 
  AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE 
                            40                            575 
[1] "AMP PEAK 12(11P15.5) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE 
                           139                            476 
  AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE 
                           139                            476 
[1] "AMP PEAK 13(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE 
                            150                             465 
  AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE 
                            150                             465 
[1] "AMP PEAK 14(13Q12.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE 
                            401                             214 
  AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE 
                            401                             214 
[1] "AMP PEAK 15(13Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE 
                           396                            219 
  AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE 
                           396                            219 
[1] "AMP PEAK 16(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE 
                           397                            218 
  AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE 
                           397                            218 
[1] "AMP PEAK 17(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE 
                            42                            573 
  AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE 
                            42                            573 
[1] "AMP PEAK 18(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                           173                            442 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                           173                            442 
[1] "AMP PEAK 19(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                         160                          455 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                         160                          455 
[1] "AMP PEAK 20(17Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE 
                           144                            471 
  AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE 
                           144                            471 
[1] "AMP PEAK 21(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                           111                            504 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                           111                            504 
[1] "AMP PEAK 22(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                         139                          476 
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                         139                          476 
[1] "AMP PEAK 23(20P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE 
                           278                            337 
  AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE 
                           278                            337 
[1] "AMP PEAK 24(20P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE 
                            363                             252 
  AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE 
                            363                             252 
[1] "AMP PEAK 25(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE 
                            469                             146 
  AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE 
                            469                             146 
[1] "AMP PEAK 26(20Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE 
                         471                          144 
  AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE 
                         471                          144 
[1] "AMP PEAK 27(20Q13.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE 
                            473                             142 
  AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE 
                            473                             142 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           244                            371 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           244                            371 
[1] "DEL PEAK  2(1P33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        176                         439 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        176                         439 
[1] "DEL PEAK  3(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                          176                           439 
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                          176                           439 
[1] "DEL PEAK  4(2P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         21                         594 
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         21                         594 
[1] "DEL PEAK  5(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           35                           580 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           35                           580 
[1] "DEL PEAK  6(3P26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE 
                           93                           522 
  DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE 
                           93                           522 
[1] "DEL PEAK  7(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                          119                           496 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                          119                           496 
[1] "DEL PEAK  8(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            64                            551 
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            64                            551 
[1] "DEL PEAK  9(4P16.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE 
                          202                           413 
  DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE 
                          202                           413 
[1] "DEL PEAK 10(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          224                           391 
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          224                           391 
[1] "DEL PEAK 11(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE 
                          233                           382 
  DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE 
                          233                           382 
[1] "DEL PEAK 12(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          159                           456 
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          159                           456 
[1] "DEL PEAK 13(5Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE 
                          187                           428 
  DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE 
                          187                           428 
[1] "DEL PEAK 14(5Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE 
                          189                           426 
  DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE 
                          189                           426 
[1] "DEL PEAK 15(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           80                           535 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           80                           535 
[1] "DEL PEAK 16(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                         92                         523 
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                         92                         523 
[1] "DEL PEAK 17(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           17                           598 
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           17                           598 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          290                           325 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          290                           325 
[1] "DEL PEAK 19(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE 
                        303                         312 
  DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE 
                        303                         312 
[1] "DEL PEAK 20(8Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE 
                           47                           568 
  DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE 
                           47                           568 
[1] "DEL PEAK 21(9P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE 
                           84                           531 
  DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE 
                           84                           531 
[1] "DEL PEAK 22(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE 
                           115                            500 
  DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE 
                           115                            500 
[1] "DEL PEAK 23(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE 
                           139                            476 
  DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE 
                           139                            476 
[1] "DEL PEAK 24(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            161                             454 
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            161                             454 
[1] "DEL PEAK 25(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE 
                           157                            458 
  DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE 
                           157                            458 
[1] "DEL PEAK 26(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE 
                           111                            504 
  DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE 
                           111                            504 
[1] "DEL PEAK 27(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE 
                            92                            523 
  DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE 
                            92                            523 
[1] "DEL PEAK 28(12Q21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE 
                             90                             525 
  DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE 
                             90                             525 
[1] "DEL PEAK 29(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE 
                           212                            403 
  DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE 
                           212                            403 
[1] "DEL PEAK 30(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE 
                           218                            397 
  DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE 
                           218                            397 
[1] "DEL PEAK 31(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                           253                            362 
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                           253                            362 
[1] "DEL PEAK 32(15Q15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE 
                           251                            364 
  DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE 
                           251                            364 
[1] "DEL PEAK 33(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE 
                           248                            367 
  DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE 
                           248                            367 
[1] "DEL PEAK 34(15Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE 
                            238                             377 
  DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE 
                            238                             377 
[1] "DEL PEAK 35(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE 
                            69                            546 
  DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE 
                            69                            546 
[1] "DEL PEAK 36(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE 
                            84                            531 
  DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE 
                            84                            531 
[1] "DEL PEAK 37(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE 
                         370                          245 
  DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE 
                         370                          245 
[1] "DEL PEAK 38(17Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE 
                            95                            520 
  DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE 
                            95                            520 
[1] "DEL PEAK 39(18P11.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE 
                            370                             245 
  DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE 
                            370                             245 
[1] "DEL PEAK 40(18Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE 
                           416                            199 
  DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE 
                           416                            199 
[1] "DEL PEAK 41(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE 
                           432                            183 
  DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE 
                           432                            183 
[1] "DEL PEAK 42(18Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE 
                           427                            188 
  DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE 
                           427                            188 
[1] "DEL PEAK 43(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE 
                            97                            518 
  DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE 
                            97                            518 
[1] "DEL PEAK 44(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE 
                           135                            480 
  DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE 
                           135                            480 
[1] "DEL PEAK 45(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE 
                           214                            401 
  DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE 
                           214                            401 
[1] "DEL PEAK 46(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE 
                            229                             386 
  DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE 
                            229                             386 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 615 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 615 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED        9     13     18      6
  AMP PEAK  1(1Q31.1) WILD-TYPE     34     49     51     35
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                           9                            34
  CLUS_2                          13                            49
  CLUS_3                          18                            51
  CLUS_4                           6                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED        7      9     19     11
  AMP PEAK  1(1Q31.1) WILD-TYPE     42     32     57     38
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                           7                            42
  CLUS_2                           9                            32
  CLUS_3                          19                            57
  CLUS_4                          11                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       39     67     39
  AMP PEAK  1(1Q31.1) WILD-TYPE    214    142    114
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          39                           214
  CLUS_2                          67                           142
  CLUS_3                          39                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       25     45     28
  AMP PEAK  1(1Q31.1) WILD-TYPE     77    112    102
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          25                            77
  CLUS_2                          45                           112
  CLUS_3                          28                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q31.1) MUTATED       17     26      9     22     20     19
  AMP PEAK  1(1Q31.1) WILD-TYPE     58     60     38     44     88     68
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q31.1) MUTATED        3
  AMP PEAK  1(1Q31.1) WILD-TYPE      9
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          17                            58
  CLUS_2                          26                            60
  CLUS_3                           9                            38
  CLUS_4                          22                            44
  CLUS_5                          20                            88
  CLUS_6                          19                            68
  CLUS_7                           3                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       46     46     24
  AMP PEAK  1(1Q31.1) WILD-TYPE    182    122     61
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          46                           182
  CLUS_2                          46                           122
  CLUS_3                          24                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED       34     37     30     44
  AMP PEAK  1(1Q31.1) WILD-TYPE    114    104    100    149
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          34                           114
  CLUS_2                          37                           104
  CLUS_3                          30                           100
  CLUS_4                          44                           149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q31.1) MUTATED       16     22     10     16     27     33
  AMP PEAK  1(1Q31.1) WILD-TYPE     64     64     54     41     63    105
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q31.1) MUTATED       21
  AMP PEAK  1(1Q31.1) WILD-TYPE     76
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          16                            64
  CLUS_2                          22                            64
  CLUS_3                          10                            54
  CLUS_4                          16                            41
  CLUS_5                          27                            63
  CLUS_6                          33                           105
  CLUS_7                          21                            76
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       49     28     51
  AMP PEAK  1(1Q31.1) WILD-TYPE    162     67    181
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          49                           162
  CLUS_2                          28                            67
  CLUS_3                          51                           181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       54     27     47
  AMP PEAK  1(1Q31.1) WILD-TYPE    174    112    124
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          54                           174
  CLUS_2                          27                           112
  CLUS_3                          47                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q31.1) MUTATED        3      3     10      8      4      5
  AMP PEAK  1(1Q31.1) WILD-TYPE     21     17     18     20     14     12
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                           3                            21
  CLUS_2                           3                            17
  CLUS_3                          10                            18
  CLUS_4                           8                            20
  CLUS_5                           4                            14
  CLUS_6                           5                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED        9      5     10      9
  AMP PEAK  1(1Q31.1) WILD-TYPE     46     10     24     22
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                           9                            46
  CLUS_2                           5                            10
  CLUS_3                          10                            24
  CLUS_4                           9                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED        6     15     17      3
  AMP PEAK  2(2Q33.1) WILD-TYPE     37     47     52     38
D2V1, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                           6                            37
  CLUS_2                          15                            47
  CLUS_3                          17                            52
  CLUS_4                           3                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED        5     15      7     14
  AMP PEAK  2(2Q33.1) WILD-TYPE     44     26     69     35
D2V2, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                           5                            44
  CLUS_2                          15                            26
  CLUS_3                           7                            69
  CLUS_4                          14                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       36     64     41
  AMP PEAK  2(2Q33.1) WILD-TYPE    217    145    112
D2V3, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          36                           217
  CLUS_2                          64                           145
  CLUS_3                          41                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       20     54     24
  AMP PEAK  2(2Q33.1) WILD-TYPE     82    103    106
D2V4, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          20                            82
  CLUS_2                          54                           103
  CLUS_3                          24                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2Q33.1) MUTATED       20     16     14     13     27     20
  AMP PEAK  2(2Q33.1) WILD-TYPE     55     70     33     53     81     67
                               vv
clus                            CLUS_7
  AMP PEAK  2(2Q33.1) MUTATED        1
  AMP PEAK  2(2Q33.1) WILD-TYPE     11
D2V5, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          20                            55
  CLUS_2                          16                            70
  CLUS_3                          14                            33
  CLUS_4                          13                            53
  CLUS_5                          27                            81
  CLUS_6                          20                            67
  CLUS_7                           1                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       59     32     20
  AMP PEAK  2(2Q33.1) WILD-TYPE    169    136     65
D2V6, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          59                           169
  CLUS_2                          32                           136
  CLUS_3                          20                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED       53     18     31     38
  AMP PEAK  2(2Q33.1) WILD-TYPE     95    123     99    155
D2V7, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          53                            95
  CLUS_2                          18                           123
  CLUS_3                          31                            99
  CLUS_4                          38                           155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2Q33.1) MUTATED       27     17      7     13     32     34
  AMP PEAK  2(2Q33.1) WILD-TYPE     53     69     57     44     58    104
                               vv
clus                            CLUS_7
  AMP PEAK  2(2Q33.1) MUTATED       10
  AMP PEAK  2(2Q33.1) WILD-TYPE     87
D2V8, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          27                            53
  CLUS_2                          17                            69
  CLUS_3                           7                            57
  CLUS_4                          13                            44
  CLUS_5                          32                            58
  CLUS_6                          34                           104
  CLUS_7                          10                            87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       58     19     42
  AMP PEAK  2(2Q33.1) WILD-TYPE    153     76    190
D2V9, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          58                           153
  CLUS_2                          19                            76
  CLUS_3                          42                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       50     40     29
  AMP PEAK  2(2Q33.1) WILD-TYPE    178     99    142
D2V10, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          50                           178
  CLUS_2                          40                            99
  CLUS_3                          29                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2Q33.1) MUTATED        7      7      9      9      3      4
  AMP PEAK  2(2Q33.1) WILD-TYPE     17     13     19     19     15     13
D2V11, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                           7                            13
  CLUS_3                           9                            19
  CLUS_4                           9                            19
  CLUS_5                           3                            15
  CLUS_6                           4                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED       16      5     11      7
  AMP PEAK  2(2Q33.1) WILD-TYPE     39     10     23     24
D2V12, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          16                            39
  CLUS_2                           5                            10
  CLUS_3                          11                            23
  CLUS_4                           7                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(5P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED        7     20     12      7
  AMP PEAK  3(5P12) WILD-TYPE     36     42     57     34
D3V1, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                         7                          36
  CLUS_2                        20                          42
  CLUS_3                        12                          57
  CLUS_4                         7                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED        8     16     11     11
  AMP PEAK  3(5P12) WILD-TYPE     41     25     65     38
D3V2, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                         8                          41
  CLUS_2                        16                          25
  CLUS_3                        11                          65
  CLUS_4                        11                          38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       25     58     36
  AMP PEAK  3(5P12) WILD-TYPE    228    151    117
D3V3, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        25                         228
  CLUS_2                        58                         151
  CLUS_3                        36                         117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       15     35     23
  AMP PEAK  3(5P12) WILD-TYPE     87    122    107
D3V4, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        15                          87
  CLUS_2                        35                         122
  CLUS_3                        23                         107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(5P12) MUTATED       16     17      7     11     19     18      2
  AMP PEAK  3(5P12) WILD-TYPE     59     69     40     55     89     69     10
D3V5, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        16                          59
  CLUS_2                        17                          69
  CLUS_3                         7                          40
  CLUS_4                        11                          55
  CLUS_5                        19                          89
  CLUS_6                        18                          69
  CLUS_7                         2                          10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       45     30     15
  AMP PEAK  3(5P12) WILD-TYPE    183    138     70
D3V6, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        45                         183
  CLUS_2                        30                         138
  CLUS_3                        15                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED       39     12     27     41
  AMP PEAK  3(5P12) WILD-TYPE    109    129    103    152
D3V7, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        39                         109
  CLUS_2                        12                         129
  CLUS_3                        27                         103
  CLUS_4                        41                         152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(5P12) MUTATED       17     10      6     10     26     36     14
  AMP PEAK  3(5P12) WILD-TYPE     63     76     58     47     64    102     83
D3V8, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        17                          63
  CLUS_2                        10                          76
  CLUS_3                         6                          58
  CLUS_4                        10                          47
  CLUS_5                        26                          64
  CLUS_6                        36                         102
  CLUS_7                        14                          83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       39     19     42
  AMP PEAK  3(5P12) WILD-TYPE    172     76    190
D3V9, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        39                         172
  CLUS_2                        19                          76
  CLUS_3                        42                         190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       38     24     38
  AMP PEAK  3(5P12) WILD-TYPE    190    115    133
D3V10, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        38                         190
  CLUS_2                        24                         115
  CLUS_3                        38                         133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(5P12) MUTATED        5      3     10      3      7      2
  AMP PEAK  3(5P12) WILD-TYPE     19     17     18     25     11     15
D3V11, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                         5                          19
  CLUS_2                         3                          17
  CLUS_3                        10                          18
  CLUS_4                         3                          25
  CLUS_5                         7                          11
  CLUS_6                         2                          15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED       10      4      5     11
  AMP PEAK  3(5P12) WILD-TYPE     45     11     29     20
D3V12, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        10                          45
  CLUS_2                         4                          11
  CLUS_3                         5                          29
  CLUS_4                        11                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(5Q22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q22.3) MUTATED        2      8      7      4
  AMP PEAK  4(5Q22.3) WILD-TYPE     41     54     62     37
D4V1, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           2                            41
  CLUS_2                           8                            54
  CLUS_3                           7                            62
  CLUS_4                           4                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q22.3) MUTATED        3      6      7      5
  AMP PEAK  4(5Q22.3) WILD-TYPE     46     35     69     44
D4V2, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           3                            46
  CLUS_2                           6                            35
  CLUS_3                           7                            69
  CLUS_4                           5                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q22.3) MUTATED       16     33     17
  AMP PEAK  4(5Q22.3) WILD-TYPE    237    176    136
D4V3, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          16                           237
  CLUS_2                          33                           176
  CLUS_3                          17                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q22.3) MUTATED       11     21     12
  AMP PEAK  4(5Q22.3) WILD-TYPE     91    136    118
D4V4, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          11                            91
  CLUS_2                          21                           136
  CLUS_3                          12                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5Q22.3) MUTATED        9      7      3      8     14     10
  AMP PEAK  4(5Q22.3) WILD-TYPE     66     79     44     58     94     77
                               vv
clus                            CLUS_7
  AMP PEAK  4(5Q22.3) MUTATED        0
  AMP PEAK  4(5Q22.3) WILD-TYPE     12
D4V5, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           9                            66
  CLUS_2                           7                            79
  CLUS_3                           3                            44
  CLUS_4                           8                            58
  CLUS_5                          14                            94
  CLUS_6                          10                            77
  CLUS_7                           0                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q22.3) MUTATED       30     12      9
  AMP PEAK  4(5Q22.3) WILD-TYPE    198    156     76
D4V6, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          30                           198
  CLUS_2                          12                           156
  CLUS_3                           9                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q22.3) MUTATED       18     11     13     24
  AMP PEAK  4(5Q22.3) WILD-TYPE    130    130    117    169
D4V7, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          18                           130
  CLUS_2                          11                           130
  CLUS_3                          13                           117
  CLUS_4                          24                           169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5Q22.3) MUTATED       12      9      1      6     12     21
  AMP PEAK  4(5Q22.3) WILD-TYPE     68     77     63     51     78    117
                               vv
clus                            CLUS_7
  AMP PEAK  4(5Q22.3) MUTATED        5
  AMP PEAK  4(5Q22.3) WILD-TYPE     92
D4V8, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          12                            68
  CLUS_2                           9                            77
  CLUS_3                           1                            63
  CLUS_4                           6                            51
  CLUS_5                          12                            78
  CLUS_6                          21                           117
  CLUS_7                           5                            92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q22.3) MUTATED       25      8     22
  AMP PEAK  4(5Q22.3) WILD-TYPE    186     87    210
D4V9, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          25                           186
  CLUS_2                           8                            87
  CLUS_3                          22                           210
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q22.3) MUTATED       21     10     24
  AMP PEAK  4(5Q22.3) WILD-TYPE    207    129    147
D4V10, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          21                           207
  CLUS_2                          10                           129
  CLUS_3                          24                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5Q22.3) MUTATED        3      2      5      4      2      4
  AMP PEAK  4(5Q22.3) WILD-TYPE     21     18     23     24     16     13
D4V11, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           3                            21
  CLUS_2                           2                            18
  CLUS_3                           5                            23
  CLUS_4                           4                            24
  CLUS_5                           2                            16
  CLUS_6                           4                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q22.3) MUTATED        4      2      6      8
  AMP PEAK  4(5Q22.3) WILD-TYPE     51     13     28     23
D4V12, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           4                            51
  CLUS_2                           2                            13
  CLUS_3                           6                            28
  CLUS_4                           8                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED        8     16     23      4
  AMP PEAK  5(6P21.1) WILD-TYPE     35     46     46     37
D5V1, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                           8                            35
  CLUS_2                          16                            46
  CLUS_3                          23                            46
  CLUS_4                           4                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED        4     12     13     22
  AMP PEAK  5(6P21.1) WILD-TYPE     45     29     63     27
D5V2, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                           4                            45
  CLUS_2                          12                            29
  CLUS_3                          13                            63
  CLUS_4                          22                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       23     82     49
  AMP PEAK  5(6P21.1) WILD-TYPE    230    127    104
D5V3, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          23                           230
  CLUS_2                          82                           127
  CLUS_3                          49                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       21     52     29
  AMP PEAK  5(6P21.1) WILD-TYPE     81    105    101
D5V4, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          21                            81
  CLUS_2                          52                           105
  CLUS_3                          29                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(6P21.1) MUTATED       18     16     17     19     23     24
  AMP PEAK  5(6P21.1) WILD-TYPE     57     70     30     47     85     63
                               vv
clus                            CLUS_7
  AMP PEAK  5(6P21.1) MUTATED        4
  AMP PEAK  5(6P21.1) WILD-TYPE      8
D5V5, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          18                            57
  CLUS_2                          16                            70
  CLUS_3                          17                            30
  CLUS_4                          19                            47
  CLUS_5                          23                            85
  CLUS_6                          24                            63
  CLUS_7                           4                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       52     42     27
  AMP PEAK  5(6P21.1) WILD-TYPE    176    126     58
D5V6, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          52                           176
  CLUS_2                          42                           126
  CLUS_3                          27                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED       42     26     34     52
  AMP PEAK  5(6P21.1) WILD-TYPE    106    115     96    141
D5V7, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          42                           106
  CLUS_2                          26                           115
  CLUS_3                          34                            96
  CLUS_4                          52                           141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(6P21.1) MUTATED       19     20      7     20     31     44
  AMP PEAK  5(6P21.1) WILD-TYPE     61     66     57     37     59     94
                               vv
clus                            CLUS_7
  AMP PEAK  5(6P21.1) MUTATED       13
  AMP PEAK  5(6P21.1) WILD-TYPE     84
D5V8, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          19                            61
  CLUS_2                          20                            66
  CLUS_3                           7                            57
  CLUS_4                          20                            37
  CLUS_5                          31                            59
  CLUS_6                          44                            94
  CLUS_7                          13                            84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       65     22     55
  AMP PEAK  5(6P21.1) WILD-TYPE    146     73    177
D5V9, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          65                           146
  CLUS_2                          22                            73
  CLUS_3                          55                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       60     40     42
  AMP PEAK  5(6P21.1) WILD-TYPE    168     99    129
D5V10, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          60                           168
  CLUS_2                          40                            99
  CLUS_3                          42                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(6P21.1) MUTATED       10      4     14      7      6      2
  AMP PEAK  5(6P21.1) WILD-TYPE     14     16     14     21     12     15
D5V11, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                           4                            16
  CLUS_3                          14                            14
  CLUS_4                           7                            21
  CLUS_5                           6                            12
  CLUS_6                           2                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED       10      7     11     15
  AMP PEAK  5(6P21.1) WILD-TYPE     45      8     23     16
D5V12, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          10                            45
  CLUS_2                           7                             8
  CLUS_3                          11                            23
  CLUS_4                          15                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P21.3) MUTATED       15     41     40     14
  AMP PEAK  6(7P21.3) WILD-TYPE     28     21     29     27
D6V1, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          15                            28
  CLUS_2                          41                            21
  CLUS_3                          40                            29
  CLUS_4                          14                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P21.3) MUTATED       13     27     33     37
  AMP PEAK  6(7P21.3) WILD-TYPE     36     14     43     12
D6V2, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          13                            36
  CLUS_2                          27                            14
  CLUS_3                          33                            43
  CLUS_4                          37                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P21.3) MUTATED       92    164    107
  AMP PEAK  6(7P21.3) WILD-TYPE    161     45     46
D6V3, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          92                           161
  CLUS_2                         164                            45
  CLUS_3                         107                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P21.3) MUTATED       55    127     65
  AMP PEAK  6(7P21.3) WILD-TYPE     47     30     65
D6V4, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          55                            47
  CLUS_2                         127                            30
  CLUS_3                          65                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P21.3) MUTATED       51     48     31     40     55     50
  AMP PEAK  6(7P21.3) WILD-TYPE     24     38     16     26     53     37
                               vv
clus                            CLUS_7
  AMP PEAK  6(7P21.3) MUTATED        5
  AMP PEAK  6(7P21.3) WILD-TYPE      7
D6V5, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          51                            24
  CLUS_2                          48                            38
  CLUS_3                          31                            16
  CLUS_4                          40                            26
  CLUS_5                          55                            53
  CLUS_6                          50                            37
  CLUS_7                           5                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P21.3) MUTATED      139     85     56
  AMP PEAK  6(7P21.3) WILD-TYPE     89     83     29
D6V6, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                         139                            89
  CLUS_2                          85                            83
  CLUS_3                          56                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P21.3) MUTATED      112     66     78    105
  AMP PEAK  6(7P21.3) WILD-TYPE     36     75     52     88
D6V7, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                         112                            36
  CLUS_2                          66                            75
  CLUS_3                          78                            52
  CLUS_4                         105                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P21.3) MUTATED       53     54     14     42     73     91
  AMP PEAK  6(7P21.3) WILD-TYPE     27     32     50     15     17     47
                               vv
clus                            CLUS_7
  AMP PEAK  6(7P21.3) MUTATED       34
  AMP PEAK  6(7P21.3) WILD-TYPE     63
D6V8, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          53                            27
  CLUS_2                          54                            32
  CLUS_3                          14                            50
  CLUS_4                          42                            15
  CLUS_5                          73                            17
  CLUS_6                          91                            47
  CLUS_7                          34                            63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P21.3) MUTATED      142     56    123
  AMP PEAK  6(7P21.3) WILD-TYPE     69     39    109
D6V9, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                         142                            69
  CLUS_2                          56                            39
  CLUS_3                         123                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P21.3) MUTATED      142     87     92
  AMP PEAK  6(7P21.3) WILD-TYPE     86     52     79
D6V10, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                         142                            86
  CLUS_2                          87                            52
  CLUS_3                          92                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P21.3) MUTATED       16     11     23     22     15      7
  AMP PEAK  6(7P21.3) WILD-TYPE      8      9      5      6      3     10
D6V11, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          16                             8
  CLUS_2                          11                             9
  CLUS_3                          23                             5
  CLUS_4                          22                             6
  CLUS_5                          15                             3
  CLUS_6                           7                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P21.3) MUTATED       34     14     23     23
  AMP PEAK  6(7P21.3) WILD-TYPE     21      1     11      8
D6V12, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          34                            21
  CLUS_2                          14                             1
  CLUS_3                          23                            11
  CLUS_4                          23                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.23) MUTATED        8     21     20     11
  AMP PEAK  7(8P11.23) WILD-TYPE     35     41     49     30
D7V1, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                           21                             41
  CLUS_3                           20                             49
  CLUS_4                           11                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.23) MUTATED       11     14     17     18
  AMP PEAK  7(8P11.23) WILD-TYPE     38     27     59     31
D7V2, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           11                             38
  CLUS_2                           14                             27
  CLUS_3                           17                             59
  CLUS_4                           18                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED       51     60    100
  AMP PEAK  7(8P11.23) WILD-TYPE    202    149     53
D7V3, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           51                            202
  CLUS_2                           60                            149
  CLUS_3                          100                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED       32     72     44
  AMP PEAK  7(8P11.23) WILD-TYPE     70     85     86
D7V4, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           32                             70
  CLUS_2                           72                             85
  CLUS_3                           44                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8P11.23) MUTATED       24     26     20     20     40     28
  AMP PEAK  7(8P11.23) WILD-TYPE     51     60     27     46     68     59
                                vv
clus                             CLUS_7
  AMP PEAK  7(8P11.23) MUTATED        2
  AMP PEAK  7(8P11.23) WILD-TYPE     10
D7V5, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           24                             51
  CLUS_2                           26                             60
  CLUS_3                           20                             27
  CLUS_4                           20                             46
  CLUS_5                           40                             68
  CLUS_6                           28                             59
  CLUS_7                            2                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED       80     51     29
  AMP PEAK  7(8P11.23) WILD-TYPE    148    117     56
D7V6, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           80                            148
  CLUS_2                           51                            117
  CLUS_3                           29                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.23) MUTATED       63     45     49     52
  AMP PEAK  7(8P11.23) WILD-TYPE     85     96     81    141
D7V7, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           63                             85
  CLUS_2                           45                             96
  CLUS_3                           49                             81
  CLUS_4                           52                            141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8P11.23) MUTATED       36     28     22     21     39     43
  AMP PEAK  7(8P11.23) WILD-TYPE     44     58     42     36     51     95
                                vv
clus                             CLUS_7
  AMP PEAK  7(8P11.23) MUTATED       20
  AMP PEAK  7(8P11.23) WILD-TYPE     77
D7V8, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           36                             44
  CLUS_2                           28                             58
  CLUS_3                           22                             42
  CLUS_4                           21                             36
  CLUS_5                           39                             51
  CLUS_6                           43                             95
  CLUS_7                           20                             77
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED       89     28     69
  AMP PEAK  7(8P11.23) WILD-TYPE    122     67    163
D7V9, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           89                            122
  CLUS_2                           28                             67
  CLUS_3                           69                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED       88     50     48
  AMP PEAK  7(8P11.23) WILD-TYPE    140     89    123
D7V10, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           88                            140
  CLUS_2                           50                             89
  CLUS_3                           48                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8P11.23) MUTATED        9      7     12     10     10      5
  AMP PEAK  7(8P11.23) WILD-TYPE     15     13     16     18      8     12
D7V11, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                            7                             13
  CLUS_3                           12                             16
  CLUS_4                           10                             18
  CLUS_5                           10                              8
  CLUS_6                            5                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.23) MUTATED       20      6     11     16
  AMP PEAK  7(8P11.23) WILD-TYPE     35      9     23     15
D7V12, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           20                             35
  CLUS_2                            6                              9
  CLUS_3                           11                             23
  CLUS_4                           16                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8P11.21) MUTATED       12     29     26     12
  AMP PEAK  8(8P11.21) WILD-TYPE     31     33     43     29
D8V1, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           12                             31
  CLUS_2                           29                             33
  CLUS_3                           26                             43
  CLUS_4                           12                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8P11.21) MUTATED       13     20     25     21
  AMP PEAK  8(8P11.21) WILD-TYPE     36     21     51     28
D8V2, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           13                             36
  CLUS_2                           20                             21
  CLUS_3                           25                             51
  CLUS_4                           21                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED       57     74    125
  AMP PEAK  8(8P11.21) WILD-TYPE    196    135     28
D8V3, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           57                            196
  CLUS_2                           74                            135
  CLUS_3                          125                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED       42     84     49
  AMP PEAK  8(8P11.21) WILD-TYPE     60     73     81
D8V4, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           42                             60
  CLUS_2                           84                             73
  CLUS_3                           49                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8P11.21) MUTATED       33     28     21     26     48     34
  AMP PEAK  8(8P11.21) WILD-TYPE     42     58     26     40     60     53
                                vv
clus                             CLUS_7
  AMP PEAK  8(8P11.21) MUTATED        6
  AMP PEAK  8(8P11.21) WILD-TYPE      6
D8V5, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           33                             42
  CLUS_2                           28                             58
  CLUS_3                           21                             26
  CLUS_4                           26                             40
  CLUS_5                           48                             60
  CLUS_6                           34                             53
  CLUS_7                            6                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED      100     61     35
  AMP PEAK  8(8P11.21) WILD-TYPE    128    107     50
D8V6, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                          100                            128
  CLUS_2                           61                            107
  CLUS_3                           35                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8P11.21) MUTATED       71     51     62     70
  AMP PEAK  8(8P11.21) WILD-TYPE     77     90     68    123
D8V7, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           71                             77
  CLUS_2                           51                             90
  CLUS_3                           62                             68
  CLUS_4                           70                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8P11.21) MUTATED       37     35     23     25     48     57
  AMP PEAK  8(8P11.21) WILD-TYPE     43     51     41     32     42     81
                                vv
clus                             CLUS_7
  AMP PEAK  8(8P11.21) MUTATED       29
  AMP PEAK  8(8P11.21) WILD-TYPE     68
D8V8, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           37                             43
  CLUS_2                           35                             51
  CLUS_3                           23                             41
  CLUS_4                           25                             32
  CLUS_5                           48                             42
  CLUS_6                           57                             81
  CLUS_7                           29                             68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED      100     35     88
  AMP PEAK  8(8P11.21) WILD-TYPE    111     60    144
D8V9, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                          100                            111
  CLUS_2                           35                             60
  CLUS_3                           88                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED      101     60     62
  AMP PEAK  8(8P11.21) WILD-TYPE    127     79    109
D8V10, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                          101                            127
  CLUS_2                           60                             79
  CLUS_3                           62                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8P11.21) MUTATED       12     10     15     15     10      5
  AMP PEAK  8(8P11.21) WILD-TYPE     12     10     13     13      8     12
D8V11, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           10                             10
  CLUS_3                           15                             13
  CLUS_4                           15                             13
  CLUS_5                           10                              8
  CLUS_6                            5                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8P11.21) MUTATED       27      9     15     16
  AMP PEAK  8(8P11.21) WILD-TYPE     28      6     19     15
D8V12, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           27                             28
  CLUS_2                            9                              6
  CLUS_3                           15                             19
  CLUS_4                           16                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q12.1) MUTATED       20     37     34     15
  AMP PEAK  9(8Q12.1) WILD-TYPE     23     25     35     26
D9V1, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          20                            23
  CLUS_2                          37                            25
  CLUS_3                          34                            35
  CLUS_4                          15                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q12.1) MUTATED       17     26     36     27
  AMP PEAK  9(8Q12.1) WILD-TYPE     32     15     40     22
D9V2, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          17                            32
  CLUS_2                          26                            15
  CLUS_3                          36                            40
  CLUS_4                          27                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q12.1) MUTATED       78    104    149
  AMP PEAK  9(8Q12.1) WILD-TYPE    175    105      4
D9V3, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          78                           175
  CLUS_2                         104                           105
  CLUS_3                         149                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q12.1) MUTATED       56    107     62
  AMP PEAK  9(8Q12.1) WILD-TYPE     46     50     68
D9V4, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          56                            46
  CLUS_2                         107                            50
  CLUS_3                          62                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q12.1) MUTATED       45     39     26     34     61     44
  AMP PEAK  9(8Q12.1) WILD-TYPE     30     47     21     32     47     43
                               vv
clus                            CLUS_7
  AMP PEAK  9(8Q12.1) MUTATED        6
  AMP PEAK  9(8Q12.1) WILD-TYPE      6
D9V5, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          45                            30
  CLUS_2                          39                            47
  CLUS_3                          26                            21
  CLUS_4                          34                            32
  CLUS_5                          61                            47
  CLUS_6                          44                            43
  CLUS_7                           6                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q12.1) MUTATED      133     77     45
  AMP PEAK  9(8Q12.1) WILD-TYPE     95     91     40
D9V6, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                         133                            95
  CLUS_2                          77                            91
  CLUS_3                          45                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q12.1) MUTATED       95     56     79     98
  AMP PEAK  9(8Q12.1) WILD-TYPE     53     85     51     95
D9V7, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          95                            53
  CLUS_2                          56                            85
  CLUS_3                          79                            51
  CLUS_4                          98                            95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q12.1) MUTATED       53     39     28     33     58     78
  AMP PEAK  9(8Q12.1) WILD-TYPE     27     47     36     24     32     60
                               vv
clus                            CLUS_7
  AMP PEAK  9(8Q12.1) MUTATED       39
  AMP PEAK  9(8Q12.1) WILD-TYPE     58
D9V8, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          53                            27
  CLUS_2                          39                            47
  CLUS_3                          28                            36
  CLUS_4                          33                            24
  CLUS_5                          58                            32
  CLUS_6                          78                            60
  CLUS_7                          39                            58
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q12.1) MUTATED      126     48    117
  AMP PEAK  9(8Q12.1) WILD-TYPE     85     47    115
D9V9, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                         126                            85
  CLUS_2                          48                            47
  CLUS_3                         117                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q12.1) MUTATED      120     89     82
  AMP PEAK  9(8Q12.1) WILD-TYPE    108     50     89
D9V10, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                         120                           108
  CLUS_2                          89                            50
  CLUS_3                          82                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q12.1) MUTATED       16     13     22     18     15      5
  AMP PEAK  9(8Q12.1) WILD-TYPE      8      7      6     10      3     12
D9V11, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          16                             8
  CLUS_2                          13                             7
  CLUS_3                          22                             6
  CLUS_4                          18                            10
  CLUS_5                          15                             3
  CLUS_6                           5                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q12.1) MUTATED       34     10     20     25
  AMP PEAK  9(8Q12.1) WILD-TYPE     21      5     14      6
D9V12, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          34                            21
  CLUS_2                          10                             5
  CLUS_3                          20                            14
  CLUS_4                          25                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q24.21) MUTATED       23     41     39     19
  AMP PEAK 10(8Q24.21) WILD-TYPE     20     21     30     22
D10V1, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           23                             20
  CLUS_2                           41                             21
  CLUS_3                           39                             30
  CLUS_4                           19                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q24.21) MUTATED       23     30     39     30
  AMP PEAK 10(8Q24.21) WILD-TYPE     26     11     37     19
D10V2, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           23                             26
  CLUS_2                           30                             11
  CLUS_3                           39                             37
  CLUS_4                           30                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q24.21) MUTATED       89    127    152
  AMP PEAK 10(8Q24.21) WILD-TYPE    164     82      1
D10V3, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           89                            164
  CLUS_2                          127                             82
  CLUS_3                          152                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q24.21) MUTATED       58    119     68
  AMP PEAK 10(8Q24.21) WILD-TYPE     44     38     62
D10V4, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           58                             44
  CLUS_2                          119                             38
  CLUS_3                           68                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8Q24.21) MUTATED       47     43     32     38     65     50
  AMP PEAK 10(8Q24.21) WILD-TYPE     28     43     15     28     43     37
                                vv
clus                             CLUS_7
  AMP PEAK 10(8Q24.21) MUTATED        6
  AMP PEAK 10(8Q24.21) WILD-TYPE      6
D10V5, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           47                             28
  CLUS_2                           43                             43
  CLUS_3                           32                             15
  CLUS_4                           38                             28
  CLUS_5                           65                             43
  CLUS_6                           50                             37
  CLUS_7                            6                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q24.21) MUTATED      143     87     51
  AMP PEAK 10(8Q24.21) WILD-TYPE     85     81     34
D10V6, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                          143                             85
  CLUS_2                           87                             81
  CLUS_3                           51                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q24.21) MUTATED      105     64     84    112
  AMP PEAK 10(8Q24.21) WILD-TYPE     43     77     46     81
D10V7, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                          105                             43
  CLUS_2                           64                             77
  CLUS_3                           84                             46
  CLUS_4                          112                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8Q24.21) MUTATED       54     44     30     37     66     86
  AMP PEAK 10(8Q24.21) WILD-TYPE     26     42     34     20     24     52
                                vv
clus                             CLUS_7
  AMP PEAK 10(8Q24.21) MUTATED       48
  AMP PEAK 10(8Q24.21) WILD-TYPE     49
D10V8, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           54                             26
  CLUS_2                           44                             42
  CLUS_3                           30                             34
  CLUS_4                           37                             20
  CLUS_5                           66                             24
  CLUS_6                           86                             52
  CLUS_7                           48                             49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q24.21) MUTATED      138     54    132
  AMP PEAK 10(8Q24.21) WILD-TYPE     73     41    100
D10V9, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                          138                             73
  CLUS_2                           54                             41
  CLUS_3                          132                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q24.21) MUTATED      134     96     94
  AMP PEAK 10(8Q24.21) WILD-TYPE     94     43     77
D10V10, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                          134                             94
  CLUS_2                           96                             43
  CLUS_3                           94                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8Q24.21) MUTATED       18     13     22     19     16      7
  AMP PEAK 10(8Q24.21) WILD-TYPE      6      7      6      9      2     10
D10V11, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           18                              6
  CLUS_2                           13                              7
  CLUS_3                           22                              6
  CLUS_4                           19                              9
  CLUS_5                           16                              2
  CLUS_6                            7                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q24.21) MUTATED       36     10     24     25
  AMP PEAK 10(8Q24.21) WILD-TYPE     19      5     10      6
D10V12, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           36                             19
  CLUS_2                           10                              5
  CLUS_3                           24                             10
  CLUS_4                           25                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10Q22.3) MUTATED        2      3      4      2
  AMP PEAK 11(10Q22.3) WILD-TYPE     41     59     65     39
D11V1, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            2                             41
  CLUS_2                            3                             59
  CLUS_3                            4                             65
  CLUS_4                            2                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10Q22.3) MUTATED        2      1      5      3
  AMP PEAK 11(10Q22.3) WILD-TYPE     47     40     71     46
D11V2, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            2                             47
  CLUS_2                            1                             40
  CLUS_3                            5                             71
  CLUS_4                            3                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10Q22.3) MUTATED       11     16     13
  AMP PEAK 11(10Q22.3) WILD-TYPE    242    193    140
D11V3, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                           11                            242
  CLUS_2                           16                            193
  CLUS_3                           13                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10Q22.3) MUTATED        4     10     14
  AMP PEAK 11(10Q22.3) WILD-TYPE     98    147    116
D11V4, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            4                             98
  CLUS_2                           10                            147
  CLUS_3                           14                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(10Q22.3) MUTATED        4      3      5      5      8      5
  AMP PEAK 11(10Q22.3) WILD-TYPE     71     83     42     61    100     82
                                vv
clus                             CLUS_7
  AMP PEAK 11(10Q22.3) MUTATED        1
  AMP PEAK 11(10Q22.3) WILD-TYPE     11
D11V5, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            4                             71
  CLUS_2                            3                             83
  CLUS_3                            5                             42
  CLUS_4                            5                             61
  CLUS_5                            8                            100
  CLUS_6                            5                             82
  CLUS_7                            1                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10Q22.3) MUTATED       15     13      3
  AMP PEAK 11(10Q22.3) WILD-TYPE    213    155     82
D11V6, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                           15                            213
  CLUS_2                           13                            155
  CLUS_3                            3                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10Q22.3) MUTATED       13      9      5     12
  AMP PEAK 11(10Q22.3) WILD-TYPE    135    132    125    181
D11V7, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                           13                            135
  CLUS_2                            9                            132
  CLUS_3                            5                            125
  CLUS_4                           12                            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(10Q22.3) MUTATED        7      8      3      4      4      5
  AMP PEAK 11(10Q22.3) WILD-TYPE     73     78     61     53     86    133
                                vv
clus                             CLUS_7
  AMP PEAK 11(10Q22.3) MUTATED        8
  AMP PEAK 11(10Q22.3) WILD-TYPE     89
D11V8, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            7                             73
  CLUS_2                            8                             78
  CLUS_3                            3                             61
  CLUS_4                            4                             53
  CLUS_5                            4                             86
  CLUS_6                            5                            133
  CLUS_7                            8                             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10Q22.3) MUTATED       17      4     13
  AMP PEAK 11(10Q22.3) WILD-TYPE    194     91    219
D11V9, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                           17                            194
  CLUS_2                            4                             91
  CLUS_3                           13                            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10Q22.3) MUTATED       15      8     11
  AMP PEAK 11(10Q22.3) WILD-TYPE    213    131    160
D11V10, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                           15                            213
  CLUS_2                            8                            131
  CLUS_3                           11                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(10Q22.3) MUTATED        1      1      2      6      3      2
  AMP PEAK 11(10Q22.3) WILD-TYPE     23     19     26     22     15     15
D11V11, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            1                             23
  CLUS_2                            1                             19
  CLUS_3                            2                             26
  CLUS_4                            6                             22
  CLUS_5                            3                             15
  CLUS_6                            2                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10Q22.3) MUTATED        5      1      3      6
  AMP PEAK 11(10Q22.3) WILD-TYPE     50     14     31     25
D11V12, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            5                             50
  CLUS_2                            1                             14
  CLUS_3                            3                             31
  CLUS_4                            6                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11P15.5) MUTATED        4     20     24      5
  AMP PEAK 12(11P15.5) WILD-TYPE     39     42     45     36
D12V1, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                            4                             39
  CLUS_2                           20                             42
  CLUS_3                           24                             45
  CLUS_4                            5                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11P15.5) MUTATED        3     14     24     12
  AMP PEAK 12(11P15.5) WILD-TYPE     46     27     52     37
D12V2, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                            3                             46
  CLUS_2                           14                             27
  CLUS_3                           24                             52
  CLUS_4                           12                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11P15.5) MUTATED       36     58     45
  AMP PEAK 12(11P15.5) WILD-TYPE    217    151    108
D12V3, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           36                            217
  CLUS_2                           58                            151
  CLUS_3                           45                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11P15.5) MUTATED       20     47     15
  AMP PEAK 12(11P15.5) WILD-TYPE     82    110    115
D12V4, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           20                             82
  CLUS_2                           47                            110
  CLUS_3                           15                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(11P15.5) MUTATED       20     19     15     16     16     20
  AMP PEAK 12(11P15.5) WILD-TYPE     55     67     32     50     92     67
                                vv
clus                             CLUS_7
  AMP PEAK 12(11P15.5) MUTATED        3
  AMP PEAK 12(11P15.5) WILD-TYPE      9
D12V5, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           20                             55
  CLUS_2                           19                             67
  CLUS_3                           15                             32
  CLUS_4                           16                             50
  CLUS_5                           16                             92
  CLUS_6                           20                             67
  CLUS_7                            3                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11P15.5) MUTATED       49     38     22
  AMP PEAK 12(11P15.5) WILD-TYPE    179    130     63
D12V6, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           49                            179
  CLUS_2                           38                            130
  CLUS_3                           22                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11P15.5) MUTATED       52     13     24     48
  AMP PEAK 12(11P15.5) WILD-TYPE     96    128    106    145
D12V7, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           52                             96
  CLUS_2                           13                            128
  CLUS_3                           24                            106
  CLUS_4                           48                            145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(11P15.5) MUTATED       30     15      2     10     21     44
  AMP PEAK 12(11P15.5) WILD-TYPE     50     71     62     47     69     94
                                vv
clus                             CLUS_7
  AMP PEAK 12(11P15.5) MUTATED       15
  AMP PEAK 12(11P15.5) WILD-TYPE     82
D12V8, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           30                             50
  CLUS_2                           15                             71
  CLUS_3                            2                             62
  CLUS_4                           10                             47
  CLUS_5                           21                             69
  CLUS_6                           44                             94
  CLUS_7                           15                             82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11P15.5) MUTATED       50     17     57
  AMP PEAK 12(11P15.5) WILD-TYPE    161     78    175
D12V9, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           50                            161
  CLUS_2                           17                             78
  CLUS_3                           57                            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11P15.5) MUTATED       35     67     22
  AMP PEAK 12(11P15.5) WILD-TYPE    193     72    149
D12V10, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           35                            193
  CLUS_2                           67                             72
  CLUS_3                           22                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(11P15.5) MUTATED        7      3      6      6      5      3
  AMP PEAK 12(11P15.5) WILD-TYPE     17     17     22     22     13     14
D12V11, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            3                             17
  CLUS_3                            6                             22
  CLUS_4                            6                             22
  CLUS_5                            5                             13
  CLUS_6                            3                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11P15.5) MUTATED       11      3      6     10
  AMP PEAK 12(11P15.5) WILD-TYPE     44     12     28     21
D12V12, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           11                             44
  CLUS_2                            3                             12
  CLUS_3                            6                             28
  CLUS_4                           10                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(12P13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       13     13     15     11
  AMP PEAK 13(12P13.32) WILD-TYPE     30     49     54     30
D13V1, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            13                              30
  CLUS_2                            13                              49
  CLUS_3                            15                              54
  CLUS_4                            11                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       14      7     20     11
  AMP PEAK 13(12P13.32) WILD-TYPE     35     34     56     38
D13V2, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            14                              35
  CLUS_2                             7                              34
  CLUS_3                            20                              56
  CLUS_4                            11                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED       68     38     44
  AMP PEAK 13(12P13.32) WILD-TYPE    185    171    109
D13V3, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            68                             185
  CLUS_2                            38                             171
  CLUS_3                            44                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED       25     28     39
  AMP PEAK 13(12P13.32) WILD-TYPE     77    129     91
D13V4, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            25                              77
  CLUS_2                            28                             129
  CLUS_3                            39                              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(12P13.32) MUTATED       16     21      8     17     24     26
  AMP PEAK 13(12P13.32) WILD-TYPE     59     65     39     49     84     61
                                 vv
clus                              CLUS_7
  AMP PEAK 13(12P13.32) MUTATED        1
  AMP PEAK 13(12P13.32) WILD-TYPE     11
D13V5, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            16                              59
  CLUS_2                            21                              65
  CLUS_3                             8                              39
  CLUS_4                            17                              49
  CLUS_5                            24                              84
  CLUS_6                            26                              61
  CLUS_7                             1                              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED       49     42     22
  AMP PEAK 13(12P13.32) WILD-TYPE    179    126     63
D13V6, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            49                             179
  CLUS_2                            42                             126
  CLUS_3                            22                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       32     42     30     46
  AMP PEAK 13(12P13.32) WILD-TYPE    116     99    100    147
D13V7, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            32                             116
  CLUS_2                            42                              99
  CLUS_3                            30                             100
  CLUS_4                            46                             147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(12P13.32) MUTATED       15     30     15     12     20     28
  AMP PEAK 13(12P13.32) WILD-TYPE     65     56     49     45     70    110
                                 vv
clus                              CLUS_7
  AMP PEAK 13(12P13.32) MUTATED       30
  AMP PEAK 13(12P13.32) WILD-TYPE     67
D13V8, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            15                              65
  CLUS_2                            30                              56
  CLUS_3                            15                              49
  CLUS_4                            12                              45
  CLUS_5                            20                              70
  CLUS_6                            28                             110
  CLUS_7                            30                              67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED       56     21     60
  AMP PEAK 13(12P13.32) WILD-TYPE    155     74    172
D13V9, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            56                             155
  CLUS_2                            21                              74
  CLUS_3                            60                             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED       58     35     44
  AMP PEAK 13(12P13.32) WILD-TYPE    170    104    127
D13V10, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            58                             170
  CLUS_2                            35                             104
  CLUS_3                            44                             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(12P13.32) MUTATED        4      7      7      9      4      2
  AMP PEAK 13(12P13.32) WILD-TYPE     20     13     21     19     14     15
D13V11, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             4                              20
  CLUS_2                             7                              13
  CLUS_3                             7                              21
  CLUS_4                             9                              19
  CLUS_5                             4                              14
  CLUS_6                             2                              15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       11      6     11      5
  AMP PEAK 13(12P13.32) WILD-TYPE     44      9     23     26
D13V12, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            11                              44
  CLUS_2                             6                               9
  CLUS_3                            11                              23
  CLUS_4                             5                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q12.13) MUTATED       19     48     57     16
  AMP PEAK 14(13Q12.13) WILD-TYPE     24     14     12     25
D14V1, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            19                              24
  CLUS_2                            48                              14
  CLUS_3                            57                              12
  CLUS_4                            16                              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q12.13) MUTATED       15     30     51     44
  AMP PEAK 14(13Q12.13) WILD-TYPE     34     11     25      5
D14V2, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            15                              34
  CLUS_2                            30                              11
  CLUS_3                            51                              25
  CLUS_4                            44                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.13) MUTATED       94    199    108
  AMP PEAK 14(13Q12.13) WILD-TYPE    159     10     45
D14V3, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            94                             159
  CLUS_2                           199                              10
  CLUS_3                           108                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.13) MUTATED       56    138     64
  AMP PEAK 14(13Q12.13) WILD-TYPE     46     19     66
D14V4, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            56                              46
  CLUS_2                           138                              19
  CLUS_3                            64                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q12.13) MUTATED       48     57     36     42     63     55
  AMP PEAK 14(13Q12.13) WILD-TYPE     27     29     11     24     45     32
                                 vv
clus                              CLUS_7
  AMP PEAK 14(13Q12.13) MUTATED        9
  AMP PEAK 14(13Q12.13) WILD-TYPE      3
D14V5, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            48                              27
  CLUS_2                            57                              29
  CLUS_3                            36                              11
  CLUS_4                            42                              24
  CLUS_5                            63                              45
  CLUS_6                            55                              32
  CLUS_7                             9                               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.13) MUTATED      140    107     63
  AMP PEAK 14(13Q12.13) WILD-TYPE     88     61     22
D14V6, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                           140                              88
  CLUS_2                           107                              61
  CLUS_3                            63                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q12.13) MUTATED      118     65     82    133
  AMP PEAK 14(13Q12.13) WILD-TYPE     30     76     48     60
D14V7, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                           118                              30
  CLUS_2                            65                              76
  CLUS_3                            82                              48
  CLUS_4                           133                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q12.13) MUTATED       60     55     14     45     75    110
  AMP PEAK 14(13Q12.13) WILD-TYPE     20     31     50     12     15     28
                                 vv
clus                              CLUS_7
  AMP PEAK 14(13Q12.13) MUTATED       39
  AMP PEAK 14(13Q12.13) WILD-TYPE     58
D14V8, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            60                              20
  CLUS_2                            55                              31
  CLUS_3                            14                              50
  CLUS_4                            45                              12
  CLUS_5                            75                              15
  CLUS_6                           110                              28
  CLUS_7                            39                              58
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.13) MUTATED      159     52    141
  AMP PEAK 14(13Q12.13) WILD-TYPE     52     43     91
D14V9, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                           159                              52
  CLUS_2                            52                              43
  CLUS_3                           141                              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.13) MUTATED      151     95    106
  AMP PEAK 14(13Q12.13) WILD-TYPE     77     44     65
D14V10, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                           151                              77
  CLUS_2                            95                              44
  CLUS_3                           106                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q12.13) MUTATED       22     11     26     19     15      9
  AMP PEAK 14(13Q12.13) WILD-TYPE      2      9      2      9      3      8
D14V11, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            22                               2
  CLUS_2                            11                               9
  CLUS_3                            26                               2
  CLUS_4                            19                               9
  CLUS_5                            15                               3
  CLUS_6                             9                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q12.13) MUTATED       35     14     27     26
  AMP PEAK 14(13Q12.13) WILD-TYPE     20      1      7      5
D14V12, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            35                              20
  CLUS_2                            14                               1
  CLUS_3                            27                               7
  CLUS_4                            26                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q12.2) MUTATED       19     47     55     17
  AMP PEAK 15(13Q12.2) WILD-TYPE     24     15     14     24
D15V1, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           19                             24
  CLUS_2                           47                             15
  CLUS_3                           55                             14
  CLUS_4                           17                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q12.2) MUTATED       16     29     50     43
  AMP PEAK 15(13Q12.2) WILD-TYPE     33     12     26      6
D15V2, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           16                             33
  CLUS_2                           29                             12
  CLUS_3                           50                             26
  CLUS_4                           43                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q12.2) MUTATED       90    200    106
  AMP PEAK 15(13Q12.2) WILD-TYPE    163      9     47
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           90                            163
  CLUS_2                          200                              9
  CLUS_3                          106                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q12.2) MUTATED       56    138     62
  AMP PEAK 15(13Q12.2) WILD-TYPE     46     19     68
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           56                             46
  CLUS_2                          138                             19
  CLUS_3                           62                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q12.2) MUTATED       48     56     36     41     63     54
  AMP PEAK 15(13Q12.2) WILD-TYPE     27     30     11     25     45     33
                                vv
clus                             CLUS_7
  AMP PEAK 15(13Q12.2) MUTATED        9
  AMP PEAK 15(13Q12.2) WILD-TYPE      3
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           48                             27
  CLUS_2                           56                             30
  CLUS_3                           36                             11
  CLUS_4                           41                             25
  CLUS_5                           63                             45
  CLUS_6                           54                             33
  CLUS_7                            9                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q12.2) MUTATED      139    106     62
  AMP PEAK 15(13Q12.2) WILD-TYPE     89     62     23
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                          139                             89
  CLUS_2                          106                             62
  CLUS_3                           62                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q12.2) MUTATED      117     64     81    131
  AMP PEAK 15(13Q12.2) WILD-TYPE     31     77     49     62
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                          117                             31
  CLUS_2                           64                             77
  CLUS_3                           81                             49
  CLUS_4                          131                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q12.2) MUTATED       59     54     13     45     75    109
  AMP PEAK 15(13Q12.2) WILD-TYPE     21     32     51     12     15     29
                                vv
clus                             CLUS_7
  AMP PEAK 15(13Q12.2) MUTATED       38
  AMP PEAK 15(13Q12.2) WILD-TYPE     59
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           59                             21
  CLUS_2                           54                             32
  CLUS_3                           13                             51
  CLUS_4                           45                             12
  CLUS_5                           75                             15
  CLUS_6                          109                             29
  CLUS_7                           38                             59
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q12.2) MUTATED      156     52    139
  AMP PEAK 15(13Q12.2) WILD-TYPE     55     43     93
D15V9, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                          156                             55
  CLUS_2                           52                             43
  CLUS_3                          139                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q12.2) MUTATED      150     91    106
  AMP PEAK 15(13Q12.2) WILD-TYPE     78     48     65
D15V10, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                          150                             78
  CLUS_2                           91                             48
  CLUS_3                          106                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q12.2) MUTATED       22     11     25     18     15      9
  AMP PEAK 15(13Q12.2) WILD-TYPE      2      9      3     10      3      8
D15V11, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           22                              2
  CLUS_2                           11                              9
  CLUS_3                           25                              3
  CLUS_4                           18                             10
  CLUS_5                           15                              3
  CLUS_6                            9                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q12.2) MUTATED       34     14     27     25
  AMP PEAK 15(13Q12.2) WILD-TYPE     21      1      7      6
D15V12, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           34                             21
  CLUS_2                           14                              1
  CLUS_3                           27                              7
  CLUS_4                           25                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(13Q22.1) MUTATED       18     48     54     17
  AMP PEAK 16(13Q22.1) WILD-TYPE     25     14     15     24
D16V1, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           18                             25
  CLUS_2                           48                             14
  CLUS_3                           54                             15
  CLUS_4                           17                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(13Q22.1) MUTATED       14     29     52     42
  AMP PEAK 16(13Q22.1) WILD-TYPE     35     12     24      7
D16V2, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           14                             35
  CLUS_2                           29                             12
  CLUS_3                           52                             24
  CLUS_4                           42                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q22.1) MUTATED       95    195    107
  AMP PEAK 16(13Q22.1) WILD-TYPE    158     14     46
D16V3, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           95                            158
  CLUS_2                          195                             14
  CLUS_3                          107                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q22.1) MUTATED       56    134     67
  AMP PEAK 16(13Q22.1) WILD-TYPE     46     23     63
D16V4, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           56                             46
  CLUS_2                          134                             23
  CLUS_3                           67                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(13Q22.1) MUTATED       48     55     34     42     64     54
  AMP PEAK 16(13Q22.1) WILD-TYPE     27     31     13     24     44     33
                                vv
clus                             CLUS_7
  AMP PEAK 16(13Q22.1) MUTATED        9
  AMP PEAK 16(13Q22.1) WILD-TYPE      3
D16V5, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           48                             27
  CLUS_2                           55                             31
  CLUS_3                           34                             13
  CLUS_4                           42                             24
  CLUS_5                           64                             44
  CLUS_6                           54                             33
  CLUS_7                            9                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q22.1) MUTATED      140    105     61
  AMP PEAK 16(13Q22.1) WILD-TYPE     88     63     24
D16V6, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                          140                             88
  CLUS_2                          105                             63
  CLUS_3                           61                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(13Q22.1) MUTATED      116     65     81    132
  AMP PEAK 16(13Q22.1) WILD-TYPE     32     76     49     61
D16V7, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                          116                             32
  CLUS_2                           65                             76
  CLUS_3                           81                             49
  CLUS_4                          132                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(13Q22.1) MUTATED       59     52     18     44     73    111
  AMP PEAK 16(13Q22.1) WILD-TYPE     21     34     46     13     17     27
                                vv
clus                             CLUS_7
  AMP PEAK 16(13Q22.1) MUTATED       37
  AMP PEAK 16(13Q22.1) WILD-TYPE     60
D16V8, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           59                             21
  CLUS_2                           52                             34
  CLUS_3                           18                             46
  CLUS_4                           44                             13
  CLUS_5                           73                             17
  CLUS_6                          111                             27
  CLUS_7                           37                             60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q22.1) MUTATED      157     54    140
  AMP PEAK 16(13Q22.1) WILD-TYPE     54     41     92
D16V9, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                          157                             54
  CLUS_2                           54                             41
  CLUS_3                          140                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q22.1) MUTATED      153     94    104
  AMP PEAK 16(13Q22.1) WILD-TYPE     75     45     67
D16V10, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                          153                             75
  CLUS_2                           94                             45
  CLUS_3                          104                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(13Q22.1) MUTATED       22     12     23     21     15      9
  AMP PEAK 16(13Q22.1) WILD-TYPE      2      8      5      7      3      8
D16V11, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           22                              2
  CLUS_2                           12                              8
  CLUS_3                           23                              5
  CLUS_4                           21                              7
  CLUS_5                           15                              3
  CLUS_6                            9                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(13Q22.1) MUTATED       36     13     28     25
  AMP PEAK 16(13Q22.1) WILD-TYPE     19      2      6      6
D16V12, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           36                             19
  CLUS_2                           13                              2
  CLUS_3                           28                              6
  CLUS_4                           25                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.1) MUTATED        3      6      3      3
  AMP PEAK 17(15Q26.1) WILD-TYPE     40     56     66     38
D17V1, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            3                             40
  CLUS_2                            6                             56
  CLUS_3                            3                             66
  CLUS_4                            3                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.1) MUTATED        5      2      4      4
  AMP PEAK 17(15Q26.1) WILD-TYPE     44     39     72     45
D17V2, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                            2                             39
  CLUS_3                            4                             72
  CLUS_4                            4                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       12     14     16
  AMP PEAK 17(15Q26.1) WILD-TYPE    241    195    137
D17V3, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           12                            241
  CLUS_2                           14                            195
  CLUS_3                           16                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED        9     11      7
  AMP PEAK 17(15Q26.1) WILD-TYPE     93    146    123
D17V4, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            9                             93
  CLUS_2                           11                            146
  CLUS_3                            7                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(15Q26.1) MUTATED       11      3      5      4      8      5
  AMP PEAK 17(15Q26.1) WILD-TYPE     64     83     42     62    100     82
                                vv
clus                             CLUS_7
  AMP PEAK 17(15Q26.1) MUTATED        1
  AMP PEAK 17(15Q26.1) WILD-TYPE     11
D17V5, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                            3                             83
  CLUS_3                            5                             42
  CLUS_4                            4                             62
  CLUS_5                            8                            100
  CLUS_6                            5                             82
  CLUS_7                            1                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       19     11      7
  AMP PEAK 17(15Q26.1) WILD-TYPE    209    157     78
D17V6, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           19                            209
  CLUS_2                           11                            157
  CLUS_3                            7                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.1) MUTATED       11      7     11     13
  AMP PEAK 17(15Q26.1) WILD-TYPE    137    134    119    180
D17V7, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           11                            137
  CLUS_2                            7                            134
  CLUS_3                           11                            119
  CLUS_4                           13                            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(15Q26.1) MUTATED        8      5      5      2      5     11
  AMP PEAK 17(15Q26.1) WILD-TYPE     72     81     59     55     85    127
                                vv
clus                             CLUS_7
  AMP PEAK 17(15Q26.1) MUTATED        6
  AMP PEAK 17(15Q26.1) WILD-TYPE     91
D17V8, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            8                             72
  CLUS_2                            5                             81
  CLUS_3                            5                             59
  CLUS_4                            2                             55
  CLUS_5                            5                             85
  CLUS_6                           11                            127
  CLUS_7                            6                             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       17      5     16
  AMP PEAK 17(15Q26.1) WILD-TYPE    194     90    216
D17V9, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           17                            194
  CLUS_2                            5                             90
  CLUS_3                           16                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       17      8     13
  AMP PEAK 17(15Q26.1) WILD-TYPE    211    131    158
D17V10, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           17                            211
  CLUS_2                            8                            131
  CLUS_3                           13                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(15Q26.1) MUTATED        1      1      1      3      0      2
  AMP PEAK 17(15Q26.1) WILD-TYPE     23     19     27     25     18     15
D17V11, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            1                             23
  CLUS_2                            1                             19
  CLUS_3                            1                             27
  CLUS_4                            3                             25
  CLUS_5                            0                             18
  CLUS_6                            2                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.1) MUTATED        4      0      3      1
  AMP PEAK 17(15Q26.1) WILD-TYPE     51     15     31     30
D17V12, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            4                             51
  CLUS_2                            0                             15
  CLUS_3                            3                             31
  CLUS_4                            1                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16P11.2) MUTATED        9     24     25      6
  AMP PEAK 18(16P11.2) WILD-TYPE     34     38     44     35
D18V1, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            9                             34
  CLUS_2                           24                             38
  CLUS_3                           25                             44
  CLUS_4                            6                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16P11.2) MUTATED        8     16     17     23
  AMP PEAK 18(16P11.2) WILD-TYPE     41     25     59     26
D18V2, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            8                             41
  CLUS_2                           16                             25
  CLUS_3                           17                             59
  CLUS_4                           23                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P11.2) MUTATED       24     98     51
  AMP PEAK 18(16P11.2) WILD-TYPE    229    111    102
D18V3, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           24                            229
  CLUS_2                           98                            111
  CLUS_3                           51                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P11.2) MUTATED       21     62     25
  AMP PEAK 18(16P11.2) WILD-TYPE     81     95    105
D18V4, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           21                             81
  CLUS_2                           62                             95
  CLUS_3                           25                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(16P11.2) MUTATED       26     21      9     20     23     26
  AMP PEAK 18(16P11.2) WILD-TYPE     49     65     38     46     85     61
                                vv
clus                             CLUS_7
  AMP PEAK 18(16P11.2) MUTATED        5
  AMP PEAK 18(16P11.2) WILD-TYPE      7
D18V5, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           26                             49
  CLUS_2                           21                             65
  CLUS_3                            9                             38
  CLUS_4                           20                             46
  CLUS_5                           23                             85
  CLUS_6                           26                             61
  CLUS_7                            5                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P11.2) MUTATED       62     40     28
  AMP PEAK 18(16P11.2) WILD-TYPE    166    128     57
D18V6, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           62                            166
  CLUS_2                           40                            128
  CLUS_3                           28                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16P11.2) MUTATED       57     21     33     61
  AMP PEAK 18(16P11.2) WILD-TYPE     91    120     97    132
D18V7, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           57                             91
  CLUS_2                           21                            120
  CLUS_3                           33                             97
  CLUS_4                           61                            132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(16P11.2) MUTATED       20     24      6     15     35     54
  AMP PEAK 18(16P11.2) WILD-TYPE     60     62     58     42     55     84
                                vv
clus                             CLUS_7
  AMP PEAK 18(16P11.2) MUTATED       18
  AMP PEAK 18(16P11.2) WILD-TYPE     79
D18V8, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           20                             60
  CLUS_2                           24                             62
  CLUS_3                            6                             58
  CLUS_4                           15                             42
  CLUS_5                           35                             55
  CLUS_6                           54                             84
  CLUS_7                           18                             79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P11.2) MUTATED       67     24     64
  AMP PEAK 18(16P11.2) WILD-TYPE    144     71    168
D18V9, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           67                            144
  CLUS_2                           24                             71
  CLUS_3                           64                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P11.2) MUTATED       62     40     53
  AMP PEAK 18(16P11.2) WILD-TYPE    166     99    118
D18V10, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           62                            166
  CLUS_2                           40                             99
  CLUS_3                           53                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(16P11.2) MUTATED        9      6     15      8      6      1
  AMP PEAK 18(16P11.2) WILD-TYPE     15     14     13     20     12     16
D18V11, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                            6                             14
  CLUS_3                           15                             13
  CLUS_4                            8                             20
  CLUS_5                            6                             12
  CLUS_6                            1                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16P11.2) MUTATED       15      9      9     12
  AMP PEAK 18(16P11.2) WILD-TYPE     40      6     25     19
D18V12, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           15                             40
  CLUS_2                            9                              6
  CLUS_3                            9                             25
  CLUS_4                           12                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED        7     23     21      6
  AMP PEAK 19(17Q12) WILD-TYPE     36     39     48     35
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          7                           36
  CLUS_2                         23                           39
  CLUS_3                         21                           48
  CLUS_4                          6                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED        6     15     17     19
  AMP PEAK 19(17Q12) WILD-TYPE     43     26     59     30
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          6                           43
  CLUS_2                         15                           26
  CLUS_3                         17                           59
  CLUS_4                         19                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       32     67     61
  AMP PEAK 19(17Q12) WILD-TYPE    221    142     92
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         32                          221
  CLUS_2                         67                          142
  CLUS_3                         61                           92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       18     61     23
  AMP PEAK 19(17Q12) WILD-TYPE     84     96    107
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         18                           84
  CLUS_2                         61                           96
  CLUS_3                         23                          107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(17Q12) MUTATED       23     18     12     16     23     25      2
  AMP PEAK 19(17Q12) WILD-TYPE     52     68     35     50     85     62     10
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         23                           52
  CLUS_2                         18                           68
  CLUS_3                         12                           35
  CLUS_4                         16                           50
  CLUS_5                         23                           85
  CLUS_6                         25                           62
  CLUS_7                          2                           10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       59     32     28
  AMP PEAK 19(17Q12) WILD-TYPE    169    136     57
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         59                          169
  CLUS_2                         32                          136
  CLUS_3                         28                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED       59     24     24     52
  AMP PEAK 19(17Q12) WILD-TYPE     89    117    106    141
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         59                           89
  CLUS_2                         24                          117
  CLUS_3                         24                          106
  CLUS_4                         52                          141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(17Q12) MUTATED       30     20      5     13     28     50     13
  AMP PEAK 19(17Q12) WILD-TYPE     50     66     59     44     62     88     84
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         30                           50
  CLUS_2                         20                           66
  CLUS_3                          5                           59
  CLUS_4                         13                           44
  CLUS_5                         28                           62
  CLUS_6                         50                           88
  CLUS_7                         13                           84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       64     13     61
  AMP PEAK 19(17Q12) WILD-TYPE    147     82    171
D19V9, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         64                          147
  CLUS_2                         13                           82
  CLUS_3                         61                          171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       53     48     37
  AMP PEAK 19(17Q12) WILD-TYPE    175     91    134
D19V10, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         53                          175
  CLUS_2                         48                           91
  CLUS_3                         37                          134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q12) MUTATED        4      4      8      9      7      2
  AMP PEAK 19(17Q12) WILD-TYPE     20     16     20     19     11     15
D19V11, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          4                           20
  CLUS_2                          4                           16
  CLUS_3                          8                           20
  CLUS_4                          9                           19
  CLUS_5                          7                           11
  CLUS_6                          2                           15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED       11      5      7     11
  AMP PEAK 19(17Q12) WILD-TYPE     44     10     27     20
D19V12, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         11                           44
  CLUS_2                          5                           10
  CLUS_3                          7                           27
  CLUS_4                         11                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(17Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q24.1) MUTATED        4     19     22      6
  AMP PEAK 20(17Q24.1) WILD-TYPE     39     43     47     35
D20V1, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                            4                             39
  CLUS_2                           19                             43
  CLUS_3                           22                             47
  CLUS_4                            6                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q24.1) MUTATED        5     13     15     18
  AMP PEAK 20(17Q24.1) WILD-TYPE     44     28     61     31
D20V2, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                           13                             28
  CLUS_3                           15                             61
  CLUS_4                           18                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q24.1) MUTATED       27     66     51
  AMP PEAK 20(17Q24.1) WILD-TYPE    226    143    102
D20V3, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           27                            226
  CLUS_2                           66                            143
  CLUS_3                           51                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q24.1) MUTATED       13     59     21
  AMP PEAK 20(17Q24.1) WILD-TYPE     89     98    109
D20V4, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           13                             89
  CLUS_2                           59                             98
  CLUS_3                           21                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(17Q24.1) MUTATED       20     19     12     13     21     24
  AMP PEAK 20(17Q24.1) WILD-TYPE     55     67     35     53     87     63
                                vv
clus                             CLUS_7
  AMP PEAK 20(17Q24.1) MUTATED        1
  AMP PEAK 20(17Q24.1) WILD-TYPE     11
D20V5, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           20                             55
  CLUS_2                           19                             67
  CLUS_3                           12                             35
  CLUS_4                           13                             53
  CLUS_5                           21                             87
  CLUS_6                           24                             63
  CLUS_7                            1                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q24.1) MUTATED       50     33     27
  AMP PEAK 20(17Q24.1) WILD-TYPE    178    135     58
D20V6, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           50                            178
  CLUS_2                           33                            135
  CLUS_3                           27                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q24.1) MUTATED       55     21     20     47
  AMP PEAK 20(17Q24.1) WILD-TYPE     93    120    110    146
D20V7, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           55                             93
  CLUS_2                           21                            120
  CLUS_3                           20                            110
  CLUS_4                           47                            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(17Q24.1) MUTATED       29     20      4     11     24     43
  AMP PEAK 20(17Q24.1) WILD-TYPE     51     66     60     46     66     95
                                vv
clus                             CLUS_7
  AMP PEAK 20(17Q24.1) MUTATED       12
  AMP PEAK 20(17Q24.1) WILD-TYPE     85
D20V8, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           29                             51
  CLUS_2                           20                             66
  CLUS_3                            4                             60
  CLUS_4                           11                             46
  CLUS_5                           24                             66
  CLUS_6                           43                             95
  CLUS_7                           12                             85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q24.1) MUTATED       61      8     53
  AMP PEAK 20(17Q24.1) WILD-TYPE    150     87    179
D20V9, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           61                            150
  CLUS_2                            8                             87
  CLUS_3                           53                            179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q24.1) MUTATED       45     43     34
  AMP PEAK 20(17Q24.1) WILD-TYPE    183     96    137
D20V10, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           45                            183
  CLUS_2                           43                             96
  CLUS_3                           34                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(17Q24.1) MUTATED        4      2      7      7      6      2
  AMP PEAK 20(17Q24.1) WILD-TYPE     20     18     21     21     12     15
D20V11, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            2                             18
  CLUS_3                            7                             21
  CLUS_4                            7                             21
  CLUS_5                            6                             12
  CLUS_6                            2                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q24.1) MUTATED        9      5      5      9
  AMP PEAK 20(17Q24.1) WILD-TYPE     46     10     29     22
D20V12, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                            9                             46
  CLUS_2                            5                             10
  CLUS_3                            5                             29
  CLUS_4                            9                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED        3     15     10      5
  AMP PEAK 21(19P13.2) WILD-TYPE     40     47     59     36
D21V1, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            3                             40
  CLUS_2                           15                             47
  CLUS_3                           10                             59
  CLUS_4                            5                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED        2     12     10      9
  AMP PEAK 21(19P13.2) WILD-TYPE     47     29     66     40
D21V2, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            2                             47
  CLUS_2                           12                             29
  CLUS_3                           10                             66
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.2) MUTATED       20     58     33
  AMP PEAK 21(19P13.2) WILD-TYPE    233    151    120
D21V3, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           20                            233
  CLUS_2                           58                            151
  CLUS_3                           33                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.2) MUTATED       13     42     24
  AMP PEAK 21(19P13.2) WILD-TYPE     89    115    106
D21V4, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           13                             89
  CLUS_2                           42                            115
  CLUS_3                           24                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(19P13.2) MUTATED       16     12     10     11     18     19
  AMP PEAK 21(19P13.2) WILD-TYPE     59     74     37     55     90     68
                                vv
clus                             CLUS_7
  AMP PEAK 21(19P13.2) MUTATED        1
  AMP PEAK 21(19P13.2) WILD-TYPE     11
D21V5, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           16                             59
  CLUS_2                           12                             74
  CLUS_3                           10                             37
  CLUS_4                           11                             55
  CLUS_5                           18                             90
  CLUS_6                           19                             68
  CLUS_7                            1                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.2) MUTATED       38     28     21
  AMP PEAK 21(19P13.2) WILD-TYPE    190    140     64
D21V6, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           38                            190
  CLUS_2                           28                            140
  CLUS_3                           21                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED       38     19     19     35
  AMP PEAK 21(19P13.2) WILD-TYPE    110    122    111    158
D21V7, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           38                            110
  CLUS_2                           19                            122
  CLUS_3                           19                            111
  CLUS_4                           35                            158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(19P13.2) MUTATED       13     20      2     11     27     31
  AMP PEAK 21(19P13.2) WILD-TYPE     67     66     62     46     63    107
                                vv
clus                             CLUS_7
  AMP PEAK 21(19P13.2) MUTATED        7
  AMP PEAK 21(19P13.2) WILD-TYPE     90
D21V8, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           13                             67
  CLUS_2                           20                             66
  CLUS_3                            2                             62
  CLUS_4                           11                             46
  CLUS_5                           27                             63
  CLUS_6                           31                            107
  CLUS_7                            7                             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.2) MUTATED       43     20     32
  AMP PEAK 21(19P13.2) WILD-TYPE    168     75    200
D21V9, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           43                            168
  CLUS_2                           20                             75
  CLUS_3                           32                            200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.2) MUTATED       42     21     32
  AMP PEAK 21(19P13.2) WILD-TYPE    186    118    139
D21V10, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           42                            186
  CLUS_2                           21                            118
  CLUS_3                           32                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(19P13.2) MUTATED        4      4      5      3      5      1
  AMP PEAK 21(19P13.2) WILD-TYPE     20     16     23     25     13     16
D21V11, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            4                             16
  CLUS_3                            5                             23
  CLUS_4                            3                             25
  CLUS_5                            5                             13
  CLUS_6                            1                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED       11      5      2      4
  AMP PEAK 21(19P13.2) WILD-TYPE     44     10     32     27
D21V12, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           11                             44
  CLUS_2                            5                             10
  CLUS_3                            2                             32
  CLUS_4                            4                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q12) MUTATED        5     21     13      6
  AMP PEAK 22(19Q12) WILD-TYPE     38     41     56     35
D22V1, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                          5                           38
  CLUS_2                         21                           41
  CLUS_3                         13                           56
  CLUS_4                          6                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q12) MUTATED        4     17     13     11
  AMP PEAK 22(19Q12) WILD-TYPE     45     24     63     38
D22V2, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                          4                           45
  CLUS_2                         17                           24
  CLUS_3                         13                           63
  CLUS_4                         11                           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19Q12) MUTATED       31     71     37
  AMP PEAK 22(19Q12) WILD-TYPE    222    138    116
D22V3, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         31                          222
  CLUS_2                         71                          138
  CLUS_3                         37                          116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19Q12) MUTATED       20     45     30
  AMP PEAK 22(19Q12) WILD-TYPE     82    112    100
D22V4, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         20                           82
  CLUS_2                         45                          112
  CLUS_3                         30                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 22(19Q12) MUTATED       19     16     14     15     21     22      1
  AMP PEAK 22(19Q12) WILD-TYPE     56     70     33     51     87     65     11
D22V5, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         19                           56
  CLUS_2                         16                           70
  CLUS_3                         14                           33
  CLUS_4                         15                           51
  CLUS_5                         21                           87
  CLUS_6                         22                           65
  CLUS_7                          1                           11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19Q12) MUTATED       49     35     24
  AMP PEAK 22(19Q12) WILD-TYPE    179    133     61
D22V6, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         49                          179
  CLUS_2                         35                          133
  CLUS_3                         24                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q12) MUTATED       45     28     26     39
  AMP PEAK 22(19Q12) WILD-TYPE    103    113    104    154
D22V7, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         45                          103
  CLUS_2                         28                          113
  CLUS_3                         26                          104
  CLUS_4                         39                          154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 22(19Q12) MUTATED       17     24      6     16     27     34     14
  AMP PEAK 22(19Q12) WILD-TYPE     63     62     58     41     63    104     83
D22V8, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         17                           63
  CLUS_2                         24                           62
  CLUS_3                          6                           58
  CLUS_4                         16                           41
  CLUS_5                         27                           63
  CLUS_6                         34                          104
  CLUS_7                         14                           83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19Q12) MUTATED       53     22     42
  AMP PEAK 22(19Q12) WILD-TYPE    158     73    190
D22V9, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         53                          158
  CLUS_2                         22                           73
  CLUS_3                         42                          190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19Q12) MUTATED       51     28     38
  AMP PEAK 22(19Q12) WILD-TYPE    177    111    133
D22V10, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         51                          177
  CLUS_2                         28                          111
  CLUS_3                         38                          133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(19Q12) MUTATED        6      5      6      5      6      1
  AMP PEAK 22(19Q12) WILD-TYPE     18     15     22     23     12     16
D22V11, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                          6                           18
  CLUS_2                          5                           15
  CLUS_3                          6                           22
  CLUS_4                          5                           23
  CLUS_5                          6                           12
  CLUS_6                          1                           16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q12) MUTATED       12      5      6      6
  AMP PEAK 22(19Q12) WILD-TYPE     43     10     28     25
D22V12, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         12                           43
  CLUS_2                          5                           10
  CLUS_3                          6                           28
  CLUS_4                          6                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20P12.1) MUTATED       14     32     41     15
  AMP PEAK 23(20P12.1) WILD-TYPE     29     30     28     26
D23V1, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                           14                             29
  CLUS_2                           32                             30
  CLUS_3                           41                             28
  CLUS_4                           15                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20P12.1) MUTATED       13     20     42     27
  AMP PEAK 23(20P12.1) WILD-TYPE     36     21     34     22
D23V2, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                           13                             36
  CLUS_2                           20                             21
  CLUS_3                           42                             34
  CLUS_4                           27                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20P12.1) MUTATED       89    119     70
  AMP PEAK 23(20P12.1) WILD-TYPE    164     90     83
D23V3, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                           89                            164
  CLUS_2                          119                             90
  CLUS_3                           70                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20P12.1) MUTATED       42     79     50
  AMP PEAK 23(20P12.1) WILD-TYPE     60     78     80
D23V4, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                           42                             60
  CLUS_2                           79                             78
  CLUS_3                           50                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20P12.1) MUTATED       41     41     24     18     38     40
  AMP PEAK 23(20P12.1) WILD-TYPE     34     45     23     48     70     47
                                vv
clus                             CLUS_7
  AMP PEAK 23(20P12.1) MUTATED        6
  AMP PEAK 23(20P12.1) WILD-TYPE      6
D23V5, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                           41                             34
  CLUS_2                           41                             45
  CLUS_3                           24                             23
  CLUS_4                           18                             48
  CLUS_5                           38                             70
  CLUS_6                           40                             47
  CLUS_7                            6                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20P12.1) MUTATED      104     66     38
  AMP PEAK 23(20P12.1) WILD-TYPE    124    102     47
D23V6, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                          104                            124
  CLUS_2                           66                            102
  CLUS_3                           38                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20P12.1) MUTATED       72     55     52     97
  AMP PEAK 23(20P12.1) WILD-TYPE     76     86     78     96
D23V7, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                           72                             76
  CLUS_2                           55                             86
  CLUS_3                           52                             78
  CLUS_4                           97                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20P12.1) MUTATED       39     38     15     33     40     76
  AMP PEAK 23(20P12.1) WILD-TYPE     41     48     49     24     50     62
                                vv
clus                             CLUS_7
  AMP PEAK 23(20P12.1) MUTATED       35
  AMP PEAK 23(20P12.1) WILD-TYPE     62
D23V8, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                           39                             41
  CLUS_2                           38                             48
  CLUS_3                           15                             49
  CLUS_4                           33                             24
  CLUS_5                           40                             50
  CLUS_6                           76                             62
  CLUS_7                           35                             62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20P12.1) MUTATED       97     42    104
  AMP PEAK 23(20P12.1) WILD-TYPE    114     53    128
D23V9, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                           97                            114
  CLUS_2                           42                             53
  CLUS_3                          104                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20P12.1) MUTATED       99     67     77
  AMP PEAK 23(20P12.1) WILD-TYPE    129     72     94
D23V10, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                           99                            129
  CLUS_2                           67                             72
  CLUS_3                           77                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20P12.1) MUTATED       11      8     18     11     11      5
  AMP PEAK 23(20P12.1) WILD-TYPE     13     12     10     17      7     12
D23V11, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                           11                             13
  CLUS_2                            8                             12
  CLUS_3                           18                             10
  CLUS_4                           11                             17
  CLUS_5                           11                              7
  CLUS_6                            5                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20P12.1) MUTATED       22      9     14     19
  AMP PEAK 23(20P12.1) WILD-TYPE     33      6     20     12
D23V12, multiclass
        clus
vv       AMP PEAK 23(20P12.1) MUTATED AMP PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                           22                             33
  CLUS_2                            9                              6
  CLUS_3                           14                             20
  CLUS_4                           19                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(20P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20P11.21) MUTATED       16     43     49     17
  AMP PEAK 24(20P11.21) WILD-TYPE     27     19     20     24
D24V1, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            16                              27
  CLUS_2                            43                              19
  CLUS_3                            49                              20
  CLUS_4                            17                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20P11.21) MUTATED       14     27     48     36
  AMP PEAK 24(20P11.21) WILD-TYPE     35     14     28     13
D24V2, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            14                              35
  CLUS_2                            27                              14
  CLUS_3                            48                              28
  CLUS_4                            36                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20P11.21) MUTATED      100    166     97
  AMP PEAK 24(20P11.21) WILD-TYPE    153     43     56
D24V3, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                           100                             153
  CLUS_2                           166                              43
  CLUS_3                            97                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20P11.21) MUTATED       51    118     64
  AMP PEAK 24(20P11.21) WILD-TYPE     51     39     66
D24V4, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            51                              51
  CLUS_2                           118                              39
  CLUS_3                            64                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(20P11.21) MUTATED       48     53     28     33     53     55
  AMP PEAK 24(20P11.21) WILD-TYPE     27     33     19     33     55     32
                                 vv
clus                              CLUS_7
  AMP PEAK 24(20P11.21) MUTATED        7
  AMP PEAK 24(20P11.21) WILD-TYPE      5
D24V5, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            48                              27
  CLUS_2                            53                              33
  CLUS_3                            28                              19
  CLUS_4                            33                              33
  CLUS_5                            53                              55
  CLUS_6                            55                              32
  CLUS_7                             7                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20P11.21) MUTATED      138     85     54
  AMP PEAK 24(20P11.21) WILD-TYPE     90     83     31
D24V6, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                           138                              90
  CLUS_2                            85                              83
  CLUS_3                            54                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20P11.21) MUTATED      113     62     70    115
  AMP PEAK 24(20P11.21) WILD-TYPE     35     79     60     78
D24V7, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                           113                              35
  CLUS_2                            62                              79
  CLUS_3                            70                              60
  CLUS_4                           115                              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(20P11.21) MUTATED       56     51     17     40     61     99
  AMP PEAK 24(20P11.21) WILD-TYPE     24     35     47     17     29     39
                                 vv
clus                              CLUS_7
  AMP PEAK 24(20P11.21) MUTATED       36
  AMP PEAK 24(20P11.21) WILD-TYPE     61
D24V8, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            56                              24
  CLUS_2                            51                              35
  CLUS_3                            17                              47
  CLUS_4                            40                              17
  CLUS_5                            61                              29
  CLUS_6                            99                              39
  CLUS_7                            36                              61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20P11.21) MUTATED      139     50    126
  AMP PEAK 24(20P11.21) WILD-TYPE     72     45    106
D24V9, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                           139                              72
  CLUS_2                            50                              45
  CLUS_3                           126                             106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20P11.21) MUTATED      130     96     89
  AMP PEAK 24(20P11.21) WILD-TYPE     98     43     82
D24V10, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                           130                              98
  CLUS_2                            96                              43
  CLUS_3                            89                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(20P11.21) MUTATED       19     11     21     16     14      8
  AMP PEAK 24(20P11.21) WILD-TYPE      5      9      7     12      4      9
D24V11, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            19                               5
  CLUS_2                            11                               9
  CLUS_3                            21                               7
  CLUS_4                            16                              12
  CLUS_5                            14                               4
  CLUS_6                             8                               9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20P11.21) MUTATED       30     10     25     24
  AMP PEAK 24(20P11.21) WILD-TYPE     25      5      9      7
D24V12, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            30                              25
  CLUS_2                            10                               5
  CLUS_3                            25                               9
  CLUS_4                            24                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q11.21) MUTATED       18     60     63     23
  AMP PEAK 25(20Q11.21) WILD-TYPE     25      2      6     18
D25V1, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            18                              25
  CLUS_2                            60                               2
  CLUS_3                            63                               6
  CLUS_4                            23                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q11.21) MUTATED       15     39     62     48
  AMP PEAK 25(20Q11.21) WILD-TYPE     34      2     14      1
D25V2, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            15                              34
  CLUS_2                            39                               2
  CLUS_3                            62                              14
  CLUS_4                            48                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q11.21) MUTATED      130    208    131
  AMP PEAK 25(20Q11.21) WILD-TYPE    123      1     22
D25V3, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                           130                             123
  CLUS_2                           208                               1
  CLUS_3                           131                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q11.21) MUTATED       68    155     76
  AMP PEAK 25(20Q11.21) WILD-TYPE     34      2     54
D25V4, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            68                              34
  CLUS_2                           155                               2
  CLUS_3                            76                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(20Q11.21) MUTATED       64     70     39     49     71     62
  AMP PEAK 25(20Q11.21) WILD-TYPE     11     16      8     17     37     25
                                 vv
clus                              CLUS_7
  AMP PEAK 25(20Q11.21) MUTATED       10
  AMP PEAK 25(20Q11.21) WILD-TYPE      2
D25V5, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            64                              11
  CLUS_2                            70                              16
  CLUS_3                            39                               8
  CLUS_4                            49                              17
  CLUS_5                            71                              37
  CLUS_6                            62                              25
  CLUS_7                            10                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q11.21) MUTATED      171    126     68
  AMP PEAK 25(20Q11.21) WILD-TYPE     57     42     17
D25V6, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                           171                              57
  CLUS_2                           126                              42
  CLUS_3                            68                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q11.21) MUTATED      144     79     93    150
  AMP PEAK 25(20Q11.21) WILD-TYPE      4     62     37     43
D25V7, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                           144                               4
  CLUS_2                            79                              62
  CLUS_3                            93                              37
  CLUS_4                           150                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(20Q11.21) MUTATED       74     63     17     50     84    132
  AMP PEAK 25(20Q11.21) WILD-TYPE      6     23     47      7      6      6
                                 vv
clus                              CLUS_7
  AMP PEAK 25(20Q11.21) MUTATED       46
  AMP PEAK 25(20Q11.21) WILD-TYPE     51
D25V8, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            74                               6
  CLUS_2                            63                              23
  CLUS_3                            17                              47
  CLUS_4                            50                               7
  CLUS_5                            84                               6
  CLUS_6                           132                               6
  CLUS_7                            46                              51
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q11.21) MUTATED      174     68    167
  AMP PEAK 25(20Q11.21) WILD-TYPE     37     27     65
D25V9, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                           174                              37
  CLUS_2                            68                              27
  CLUS_3                           167                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q11.21) MUTATED      167    122    120
  AMP PEAK 25(20Q11.21) WILD-TYPE     61     17     51
D25V10, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                           167                              61
  CLUS_2                           122                              17
  CLUS_3                           120                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(20Q11.21) MUTATED       23     15     26     22     17      9
  AMP PEAK 25(20Q11.21) WILD-TYPE      1      5      2      6      1      8
D25V11, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            23                               1
  CLUS_2                            15                               5
  CLUS_3                            26                               2
  CLUS_4                            22                               6
  CLUS_5                            17                               1
  CLUS_6                             9                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q11.21) MUTATED       39     15     30     28
  AMP PEAK 25(20Q11.21) WILD-TYPE     16      0      4      3
D25V12, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            39                              16
  CLUS_2                            15                               0
  CLUS_3                            30                               4
  CLUS_4                            28                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(20Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q12) MUTATED       17     60     63     22
  AMP PEAK 26(20Q12) WILD-TYPE     26      2      6     19
D26V1, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         17                           26
  CLUS_2                         60                            2
  CLUS_3                         63                            6
  CLUS_4                         22                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q12) MUTATED       14     39     61     48
  AMP PEAK 26(20Q12) WILD-TYPE     35      2     15      1
D26V2, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         14                           35
  CLUS_2                         39                            2
  CLUS_3                         61                           15
  CLUS_4                         48                            1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q12) MUTATED      130    208    133
  AMP PEAK 26(20Q12) WILD-TYPE    123      1     20
D26V3, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                        130                          123
  CLUS_2                        208                            1
  CLUS_3                        133                           20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q12) MUTATED       69    155     79
  AMP PEAK 26(20Q12) WILD-TYPE     33      2     51
D26V4, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         69                           33
  CLUS_2                        155                            2
  CLUS_3                         79                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 26(20Q12) MUTATED       64     69     40     48     73     62     10
  AMP PEAK 26(20Q12) WILD-TYPE     11     17      7     18     35     25      2
D26V5, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         64                           11
  CLUS_2                         69                           17
  CLUS_3                         40                            7
  CLUS_4                         48                           18
  CLUS_5                         73                           35
  CLUS_6                         62                           25
  CLUS_7                         10                            2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q12) MUTATED      173    125     68
  AMP PEAK 26(20Q12) WILD-TYPE     55     43     17
D26V6, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                        173                           55
  CLUS_2                        125                           43
  CLUS_3                         68                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q12) MUTATED      144     80     95    149
  AMP PEAK 26(20Q12) WILD-TYPE      4     61     35     44
D26V7, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                        144                            4
  CLUS_2                         80                           61
  CLUS_3                         95                           35
  CLUS_4                        149                           44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 26(20Q12) MUTATED       74     64     19     50     85    132     44
  AMP PEAK 26(20Q12) WILD-TYPE      6     22     45      7      5      6     53
D26V8, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         74                            6
  CLUS_2                         64                           22
  CLUS_3                         19                           45
  CLUS_4                         50                            7
  CLUS_5                         85                            5
  CLUS_6                        132                            6
  CLUS_7                         44                           53
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q12) MUTATED      176     69    166
  AMP PEAK 26(20Q12) WILD-TYPE     35     26     66
D26V9, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                        176                           35
  CLUS_2                         69                           26
  CLUS_3                        166                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q12) MUTATED      169    123    119
  AMP PEAK 26(20Q12) WILD-TYPE     59     16     52
D26V10, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                        169                           59
  CLUS_2                        123                           16
  CLUS_3                        119                           52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(20Q12) MUTATED       23     16     27     23     17      9
  AMP PEAK 26(20Q12) WILD-TYPE      1      4      1      5      1      8
D26V11, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         23                            1
  CLUS_2                         16                            4
  CLUS_3                         27                            1
  CLUS_4                         23                            5
  CLUS_5                         17                            1
  CLUS_6                          9                            8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q12) MUTATED       41     15     30     29
  AMP PEAK 26(20Q12) WILD-TYPE     14      0      4      2
D26V12, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         41                           14
  CLUS_2                         15                            0
  CLUS_3                         30                            4
  CLUS_4                         29                            2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(20Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q13.31) MUTATED       18     60     64     24
  AMP PEAK 27(20Q13.31) WILD-TYPE     25      2      5     17
D27V1, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                            18                              25
  CLUS_2                            60                               2
  CLUS_3                            64                               5
  CLUS_4                            24                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q13.31) MUTATED       15     39     64     48
  AMP PEAK 27(20Q13.31) WILD-TYPE     34      2     12      1
D27V2, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                            15                              34
  CLUS_2                            39                               2
  CLUS_3                            64                              12
  CLUS_4                            48                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.31) MUTATED      131    208    134
  AMP PEAK 27(20Q13.31) WILD-TYPE    122      1     19
D27V3, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                           131                             122
  CLUS_2                           208                               1
  CLUS_3                           134                              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.31) MUTATED       69    154     78
  AMP PEAK 27(20Q13.31) WILD-TYPE     33      3     52
D27V4, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                            69                              33
  CLUS_2                           154                               3
  CLUS_3                            78                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(20Q13.31) MUTATED       64     70     38     49     73     63
  AMP PEAK 27(20Q13.31) WILD-TYPE     11     16      9     17     35     24
                                 vv
clus                              CLUS_7
  AMP PEAK 27(20Q13.31) MUTATED       10
  AMP PEAK 27(20Q13.31) WILD-TYPE      2
D27V5, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                            64                              11
  CLUS_2                            70                              16
  CLUS_3                            38                               9
  CLUS_4                            49                              17
  CLUS_5                            73                              35
  CLUS_6                            63                              24
  CLUS_7                            10                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.31) MUTATED      173    125     69
  AMP PEAK 27(20Q13.31) WILD-TYPE     55     43     16
D27V6, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                           173                              55
  CLUS_2                           125                              43
  CLUS_3                            69                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q13.31) MUTATED      142     82     95    151
  AMP PEAK 27(20Q13.31) WILD-TYPE      6     59     35     42
D27V7, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                           142                               6
  CLUS_2                            82                              59
  CLUS_3                            95                              35
  CLUS_4                           151                              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(20Q13.31) MUTATED       73     64     18     50     85    132
  AMP PEAK 27(20Q13.31) WILD-TYPE      7     22     46      7      5      6
                                 vv
clus                              CLUS_7
  AMP PEAK 27(20Q13.31) MUTATED       48
  AMP PEAK 27(20Q13.31) WILD-TYPE     49
D27V8, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                            73                               7
  CLUS_2                            64                              22
  CLUS_3                            18                              46
  CLUS_4                            50                               7
  CLUS_5                            85                               5
  CLUS_6                           132                               6
  CLUS_7                            48                              49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.31) MUTATED      176     69    169
  AMP PEAK 27(20Q13.31) WILD-TYPE     35     26     63
D27V9, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                           176                              35
  CLUS_2                            69                              26
  CLUS_3                           169                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.31) MUTATED      170    123    121
  AMP PEAK 27(20Q13.31) WILD-TYPE     58     16     50
D27V10, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                           170                              58
  CLUS_2                           123                              16
  CLUS_3                           121                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(20Q13.31) MUTATED       22     16     27     23     17      9
  AMP PEAK 27(20Q13.31) WILD-TYPE      2      4      1      5      1      8
D27V11, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                            22                               2
  CLUS_2                            16                               4
  CLUS_3                            27                               1
  CLUS_4                            23                               5
  CLUS_5                            17                               1
  CLUS_6                             9                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q13.31) MUTATED       41     15     29     29
  AMP PEAK 27(20Q13.31) WILD-TYPE     14      0      5      2
D27V12, multiclass
        clus
vv       AMP PEAK 27(20Q13.31) MUTATED AMP PEAK 27(20Q13.31) WILD-TYPE
  CLUS_1                            41                              14
  CLUS_2                            15                               0
  CLUS_3                            29                               5
  CLUS_4                            29                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       14     36     36      7
  DEL PEAK  1(1P36.11) WILD-TYPE     29     26     33     34
D28V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           14                             29
  CLUS_2                           36                             26
  CLUS_3                           36                             33
  CLUS_4                            7                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       12     27     29     25
  DEL PEAK  1(1P36.11) WILD-TYPE     37     14     47     24
D28V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           12                             37
  CLUS_2                           27                             14
  CLUS_3                           29                             47
  CLUS_4                           25                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       61    121     62
  DEL PEAK  1(1P36.11) WILD-TYPE    192     88     91
D28V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           61                            192
  CLUS_2                          121                             88
  CLUS_3                           62                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       32     84     34
  DEL PEAK  1(1P36.11) WILD-TYPE     70     73     96
D28V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           32                             70
  CLUS_2                           84                             73
  CLUS_3                           34                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       33     34     18     27     35     31
  DEL PEAK  1(1P36.11) WILD-TYPE     42     52     29     39     73     56
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.11) MUTATED        8
  DEL PEAK  1(1P36.11) WILD-TYPE      4
D28V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           33                             42
  CLUS_2                           34                             52
  CLUS_3                           18                             29
  CLUS_4                           27                             39
  CLUS_5                           35                             73
  CLUS_6                           31                             56
  CLUS_7                            8                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       79     69     38
  DEL PEAK  1(1P36.11) WILD-TYPE    149     99     47
D28V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           79                            149
  CLUS_2                           69                             99
  CLUS_3                           38                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       75     29     53     86
  DEL PEAK  1(1P36.11) WILD-TYPE     73    112     77    107
D28V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           75                             73
  CLUS_2                           29                            112
  CLUS_3                           53                             77
  CLUS_4                           86                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       36     30      6     22     48     72
  DEL PEAK  1(1P36.11) WILD-TYPE     44     56     58     35     42     66
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.11) MUTATED       29
  DEL PEAK  1(1P36.11) WILD-TYPE     68
D28V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           36                             44
  CLUS_2                           30                             56
  CLUS_3                            6                             58
  CLUS_4                           22                             35
  CLUS_5                           48                             42
  CLUS_6                           72                             66
  CLUS_7                           29                             68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       88     32     94
  DEL PEAK  1(1P36.11) WILD-TYPE    123     63    138
D28V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           88                            123
  CLUS_2                           32                             63
  CLUS_3                           94                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       79     70     65
  DEL PEAK  1(1P36.11) WILD-TYPE    149     69    106
D28V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           79                            149
  CLUS_2                           70                             69
  CLUS_3                           65                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED        7      8     13     10     11      4
  DEL PEAK  1(1P36.11) WILD-TYPE     17     12     15     18      7     13
D28V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            8                             12
  CLUS_3                           13                             15
  CLUS_4                           10                             18
  CLUS_5                           11                              7
  CLUS_6                            4                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       19      7     12     15
  DEL PEAK  1(1P36.11) WILD-TYPE     36      8     22     16
D28V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           19                             36
  CLUS_2                            7                              8
  CLUS_3                           12                             22
  CLUS_4                           15                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  2(1P33) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       12     21     23      4
  DEL PEAK  2(1P33) WILD-TYPE     31     41     46     37
D29V1, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        12                          31
  CLUS_2                        21                          41
  CLUS_3                        23                          46
  CLUS_4                         4                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       10     17     17     16
  DEL PEAK  2(1P33) WILD-TYPE     39     24     59     33
D29V2, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        10                          39
  CLUS_2                        17                          24
  CLUS_3                        17                          59
  CLUS_4                        16                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       44     95     37
  DEL PEAK  2(1P33) WILD-TYPE    209    114    116
D29V3, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        44                         209
  CLUS_2                        95                         114
  CLUS_3                        37                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       26     64     25
  DEL PEAK  2(1P33) WILD-TYPE     76     93    105
D29V4, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        26                          76
  CLUS_2                        64                          93
  CLUS_3                        25                         105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED       24     23     17     22     26     20      6
  DEL PEAK  2(1P33) WILD-TYPE     51     63     30     44     82     67      6
D29V5, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        24                          51
  CLUS_2                        23                          63
  CLUS_3                        17                          30
  CLUS_4                        22                          44
  CLUS_5                        26                          82
  CLUS_6                        20                          67
  CLUS_7                         6                           6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       61     50     27
  DEL PEAK  2(1P33) WILD-TYPE    167    118     58
D29V6, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        61                         167
  CLUS_2                        50                         118
  CLUS_3                        27                          58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       58     23     38     56
  DEL PEAK  2(1P33) WILD-TYPE     90    118     92    137
D29V7, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        58                          90
  CLUS_2                        23                         118
  CLUS_3                        38                          92
  CLUS_4                        56                         137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED       29     21      7     18     34     47     19
  DEL PEAK  2(1P33) WILD-TYPE     51     65     57     39     56     91     78
D29V8, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        29                          51
  CLUS_2                        21                          65
  CLUS_3                         7                          57
  CLUS_4                        18                          39
  CLUS_5                        34                          56
  CLUS_6                        47                          91
  CLUS_7                        19                          78
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       66     26     60
  DEL PEAK  2(1P33) WILD-TYPE    145     69    172
D29V9, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        66                         145
  CLUS_2                        26                          69
  CLUS_3                        60                         172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       58     49     45
  DEL PEAK  2(1P33) WILD-TYPE    170     90    126
D29V10, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        58                         170
  CLUS_2                        49                          90
  CLUS_3                        45                         126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P33) MUTATED        6      7     10      9      8      4
  DEL PEAK  2(1P33) WILD-TYPE     18     13     18     19     10     13
D29V11, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         6                          18
  CLUS_2                         7                          13
  CLUS_3                        10                          18
  CLUS_4                         9                          19
  CLUS_5                         8                          10
  CLUS_6                         4                          13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       18      4      9     13
  DEL PEAK  2(1P33) WILD-TYPE     37     11     25     18
D29V12, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        18                          37
  CLUS_2                         4                          11
  CLUS_3                         9                          25
  CLUS_4                        13                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  3(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       12     19     20      6
  DEL PEAK  3(1P13.2) WILD-TYPE     31     43     49     35
D30V1, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          12                            31
  CLUS_2                          19                            43
  CLUS_3                          20                            49
  CLUS_4                           6                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       10     14     18     15
  DEL PEAK  3(1P13.2) WILD-TYPE     39     27     58     34
D30V2, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          10                            39
  CLUS_2                          14                            27
  CLUS_3                          18                            58
  CLUS_4                          15                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       46     92     38
  DEL PEAK  3(1P13.2) WILD-TYPE    207    117    115
D30V3, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          46                           207
  CLUS_2                          92                           117
  CLUS_3                          38                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       25     62     30
  DEL PEAK  3(1P13.2) WILD-TYPE     77     95    100
D30V4, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          25                            77
  CLUS_2                          62                            95
  CLUS_3                          30                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED       26     19     15     24     28     22
  DEL PEAK  3(1P13.2) WILD-TYPE     49     67     32     42     80     65
                               vv
clus                            CLUS_7
  DEL PEAK  3(1P13.2) MUTATED        6
  DEL PEAK  3(1P13.2) WILD-TYPE      6
D30V5, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          26                            49
  CLUS_2                          19                            67
  CLUS_3                          15                            32
  CLUS_4                          24                            42
  CLUS_5                          28                            80
  CLUS_6                          22                            65
  CLUS_7                           6                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       65     48     27
  DEL PEAK  3(1P13.2) WILD-TYPE    163    120     58
D30V6, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          65                           163
  CLUS_2                          48                           120
  CLUS_3                          27                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       53     22     42     58
  DEL PEAK  3(1P13.2) WILD-TYPE     95    119     88    135
D30V7, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          53                            95
  CLUS_2                          22                           119
  CLUS_3                          42                            88
  CLUS_4                          58                           135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED       30     20      8     15     37     46
  DEL PEAK  3(1P13.2) WILD-TYPE     50     66     56     42     53     92
                               vv
clus                            CLUS_7
  DEL PEAK  3(1P13.2) MUTATED       19
  DEL PEAK  3(1P13.2) WILD-TYPE     78
D30V8, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          30                            50
  CLUS_2                          20                            66
  CLUS_3                           8                            56
  CLUS_4                          15                            42
  CLUS_5                          37                            53
  CLUS_6                          46                            92
  CLUS_7                          19                            78
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       64     26     59
  DEL PEAK  3(1P13.2) WILD-TYPE    147     69    173
D30V9, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          64                           147
  CLUS_2                          26                            69
  CLUS_3                          59                           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       58     48     43
  DEL PEAK  3(1P13.2) WILD-TYPE    170     91    128
D30V10, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          58                           170
  CLUS_2                          48                            91
  CLUS_3                          43                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED        6      7     12      7      8      4
  DEL PEAK  3(1P13.2) WILD-TYPE     18     13     16     21     10     13
D30V11, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           6                            18
  CLUS_2                           7                            13
  CLUS_3                          12                            16
  CLUS_4                           7                            21
  CLUS_5                           8                            10
  CLUS_6                           4                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       15      4     10     15
  DEL PEAK  3(1P13.2) WILD-TYPE     40     11     24     16
D30V12, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          15                            40
  CLUS_2                           4                            11
  CLUS_3                          10                            24
  CLUS_4                          15                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  4(2P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        3      4      5      2
  DEL PEAK  4(2P12) WILD-TYPE     40     58     64     39
D31V1, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         3                          40
  CLUS_2                         4                          58
  CLUS_3                         5                          64
  CLUS_4                         2                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        4      2      5      3
  DEL PEAK  4(2P12) WILD-TYPE     45     39     71     46
D31V2, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         4                          45
  CLUS_2                         2                          39
  CLUS_3                         5                          71
  CLUS_4                         3                          46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        1     14      6
  DEL PEAK  4(2P12) WILD-TYPE    252    195    147
D31V3, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                         252
  CLUS_2                        14                         195
  CLUS_3                         6                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        0      7      0
  DEL PEAK  4(2P12) WILD-TYPE    102    150    130
D31V4, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                         102
  CLUS_2                         7                         150
  CLUS_3                         0                         130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P12) MUTATED        1      2      1      1      4      7      1
  DEL PEAK  4(2P12) WILD-TYPE     74     84     46     65    104     80     11
D31V5, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                          74
  CLUS_2                         2                          84
  CLUS_3                         1                          46
  CLUS_4                         1                          65
  CLUS_5                         4                         104
  CLUS_6                         7                          80
  CLUS_7                         1                          11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        6      2      9
  DEL PEAK  4(2P12) WILD-TYPE    222    166     76
D31V6, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         6                         222
  CLUS_2                         2                         166
  CLUS_3                         9                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        3      2      2     14
  DEL PEAK  4(2P12) WILD-TYPE    145    139    128    179
D31V7, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         3                         145
  CLUS_2                         2                         139
  CLUS_3                         2                         128
  CLUS_4                        14                         179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P12) MUTATED        0      1      0      2      2      8      8
  DEL PEAK  4(2P12) WILD-TYPE     80     85     64     55     88    130     89
D31V8, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                          80
  CLUS_2                         1                          85
  CLUS_3                         0                          64
  CLUS_4                         2                          55
  CLUS_5                         2                          88
  CLUS_6                         8                         130
  CLUS_7                         8                          89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        5      0     15
  DEL PEAK  4(2P12) WILD-TYPE    206     95    217
D31V9, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         5                         206
  CLUS_2                         0                          95
  CLUS_3                        15                         217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        5      4     11
  DEL PEAK  4(2P12) WILD-TYPE    223    135    160
D31V10, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         5                         223
  CLUS_2                         4                         135
  CLUS_3                        11                         160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2P12) MUTATED        0      0      1      0      2      0
  DEL PEAK  4(2P12) WILD-TYPE     24     20     27     28     16     17
D31V11, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                          24
  CLUS_2                         0                          20
  CLUS_3                         1                          27
  CLUS_4                         0                          28
  CLUS_5                         2                          16
  CLUS_6                         0                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        0      1      0      2
  DEL PEAK  4(2P12) WILD-TYPE     55     14     34     29
D31V12, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                          55
  CLUS_2                         1                          14
  CLUS_3                         0                          34
  CLUS_4                         2                          29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  5(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        4      6      5      4
  DEL PEAK  5(2Q22.1) WILD-TYPE     39     56     64     37
D32V1, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                            39
  CLUS_2                           6                            56
  CLUS_3                           5                            64
  CLUS_4                           4                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        5      2      9      3
  DEL PEAK  5(2Q22.1) WILD-TYPE     44     39     67     46
D32V2, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           5                            44
  CLUS_2                           2                            39
  CLUS_3                           9                            67
  CLUS_4                           3                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        9     17      9
  DEL PEAK  5(2Q22.1) WILD-TYPE    244    192    144
D32V3, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           9                           244
  CLUS_2                          17                           192
  CLUS_3                           9                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        3      9      5
  DEL PEAK  5(2Q22.1) WILD-TYPE     99    148    125
D32V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           3                            99
  CLUS_2                           9                           148
  CLUS_3                           5                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED        6      1      4      2      5      7
  DEL PEAK  5(2Q22.1) WILD-TYPE     69     85     43     64    103     80
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q22.1) MUTATED        0
  DEL PEAK  5(2Q22.1) WILD-TYPE     12
D32V5, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           6                            69
  CLUS_2                           1                            85
  CLUS_3                           4                            43
  CLUS_4                           2                            64
  CLUS_5                           5                           103
  CLUS_6                           7                            80
  CLUS_7                           0                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       12      6      7
  DEL PEAK  5(2Q22.1) WILD-TYPE    216    162     78
D32V6, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          12                           216
  CLUS_2                           6                           162
  CLUS_3                           7                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        7      4      7     17
  DEL PEAK  5(2Q22.1) WILD-TYPE    141    137    123    176
D32V7, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           7                           141
  CLUS_2                           4                           137
  CLUS_3                           7                           123
  CLUS_4                          17                           176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED        3      3      1      1      7      9
  DEL PEAK  5(2Q22.1) WILD-TYPE     77     83     63     56     83    129
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q22.1) MUTATED       11
  DEL PEAK  5(2Q22.1) WILD-TYPE     86
D32V8, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           3                            77
  CLUS_2                           3                            83
  CLUS_3                           1                            63
  CLUS_4                           1                            56
  CLUS_5                           7                            83
  CLUS_6                           9                           129
  CLUS_7                          11                            86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       10      4     16
  DEL PEAK  5(2Q22.1) WILD-TYPE    201     91    216
D32V9, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          10                           201
  CLUS_2                           4                            91
  CLUS_3                          16                           216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        9      6     15
  DEL PEAK  5(2Q22.1) WILD-TYPE    219    133    156
D32V10, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           9                           219
  CLUS_2                           6                           133
  CLUS_3                          15                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED        0      2      1      1      1      1
  DEL PEAK  5(2Q22.1) WILD-TYPE     24     18     27     27     17     16
D32V11, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           0                            24
  CLUS_2                           2                            18
  CLUS_3                           1                            27
  CLUS_4                           1                            27
  CLUS_5                           1                            17
  CLUS_6                           1                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        2      1      1      2
  DEL PEAK  5(2Q22.1) WILD-TYPE     53     14     33     29
D32V12, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           2                            53
  CLUS_2                           1                            14
  CLUS_3                           1                            33
  CLUS_4                           2                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  6(3P26.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED        9     10     11      3
  DEL PEAK  6(3P26.3) WILD-TYPE     34     52     58     38
D33V1, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                           9                            34
  CLUS_2                          10                            52
  CLUS_3                          11                            58
  CLUS_4                           3                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED        6      6     10     11
  DEL PEAK  6(3P26.3) WILD-TYPE     43     35     66     38
D33V2, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                           6                            43
  CLUS_2                           6                            35
  CLUS_3                          10                            66
  CLUS_4                          11                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.3) MUTATED       32     40     21
  DEL PEAK  6(3P26.3) WILD-TYPE    221    169    132
D33V3, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          32                           221
  CLUS_2                          40                           169
  CLUS_3                          21                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.3) MUTATED       16     25     20
  DEL PEAK  6(3P26.3) WILD-TYPE     86    132    110
D33V4, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          16                            86
  CLUS_2                          25                           132
  CLUS_3                          20                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.3) MUTATED       14      7      5     12     13     17
  DEL PEAK  6(3P26.3) WILD-TYPE     61     79     42     54     95     70
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P26.3) MUTATED        3
  DEL PEAK  6(3P26.3) WILD-TYPE      9
D33V5, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          14                            61
  CLUS_2                           7                            79
  CLUS_3                           5                            42
  CLUS_4                          12                            54
  CLUS_5                          13                            95
  CLUS_6                          17                            70
  CLUS_7                           3                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.3) MUTATED       34     19     18
  DEL PEAK  6(3P26.3) WILD-TYPE    194    149     67
D33V6, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          34                           194
  CLUS_2                          19                           149
  CLUS_3                          18                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED       24     14     20     35
  DEL PEAK  6(3P26.3) WILD-TYPE    124    127    110    158
D33V7, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          24                           124
  CLUS_2                          14                           127
  CLUS_3                          20                           110
  CLUS_4                          35                           158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.3) MUTATED       12     10      6     11     15     26
  DEL PEAK  6(3P26.3) WILD-TYPE     68     76     58     46     75    112
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P26.3) MUTATED       13
  DEL PEAK  6(3P26.3) WILD-TYPE     84
D33V8, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          12                            68
  CLUS_2                          10                            76
  CLUS_3                           6                            58
  CLUS_4                          11                            46
  CLUS_5                          15                            75
  CLUS_6                          26                           112
  CLUS_7                          13                            84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.3) MUTATED       36     11     36
  DEL PEAK  6(3P26.3) WILD-TYPE    175     84    196
D33V9, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          36                           175
  CLUS_2                          11                            84
  CLUS_3                          36                           196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.3) MUTATED       31     23     29
  DEL PEAK  6(3P26.3) WILD-TYPE    197    116    142
D33V10, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          31                           197
  CLUS_2                          23                           116
  CLUS_3                          29                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.3) MUTATED        2      5      8      7      5      2
  DEL PEAK  6(3P26.3) WILD-TYPE     22     15     20     21     13     15
D33V11, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                           2                            22
  CLUS_2                           5                            15
  CLUS_3                           8                            20
  CLUS_4                           7                            21
  CLUS_5                           5                            13
  CLUS_6                           2                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED       12      3      5      9
  DEL PEAK  6(3P26.3) WILD-TYPE     43     12     29     22
D33V12, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          12                            43
  CLUS_2                           3                            12
  CLUS_3                           5                            29
  CLUS_4                           9                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  7(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       12     13     13      7
  DEL PEAK  7(3P14.2) WILD-TYPE     31     49     56     34
D34V1, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          12                            31
  CLUS_2                          13                            49
  CLUS_3                          13                            56
  CLUS_4                           7                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       10     11     12     12
  DEL PEAK  7(3P14.2) WILD-TYPE     39     30     64     37
D34V2, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          10                            39
  CLUS_2                          11                            30
  CLUS_3                          12                            64
  CLUS_4                          12                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       44     46     29
  DEL PEAK  7(3P14.2) WILD-TYPE    209    163    124
D34V3, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          44                           209
  CLUS_2                          46                           163
  CLUS_3                          29                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       19     30     26
  DEL PEAK  7(3P14.2) WILD-TYPE     83    127    104
D34V4, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          19                            83
  CLUS_2                          30                           127
  CLUS_3                          26                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED       20      8      7     16     14     20
  DEL PEAK  7(3P14.2) WILD-TYPE     55     78     40     50     94     67
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P14.2) MUTATED        2
  DEL PEAK  7(3P14.2) WILD-TYPE     10
D34V5, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          20                            55
  CLUS_2                           8                            78
  CLUS_3                           7                            40
  CLUS_4                          16                            50
  CLUS_5                          14                            94
  CLUS_6                          20                            67
  CLUS_7                           2                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       42     27     18
  DEL PEAK  7(3P14.2) WILD-TYPE    186    141     67
D34V6, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          42                           186
  CLUS_2                          27                           141
  CLUS_3                          18                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       35     20     24     40
  DEL PEAK  7(3P14.2) WILD-TYPE    113    121    106    153
D34V7, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          35                           113
  CLUS_2                          20                           121
  CLUS_3                          24                           106
  CLUS_4                          40                           153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED       15     16      9     14     17     30
  DEL PEAK  7(3P14.2) WILD-TYPE     65     70     55     43     73    108
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P14.2) MUTATED       18
  DEL PEAK  7(3P14.2) WILD-TYPE     79
D34V8, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          15                            65
  CLUS_2                          16                            70
  CLUS_3                           9                            55
  CLUS_4                          14                            43
  CLUS_5                          17                            73
  CLUS_6                          30                           108
  CLUS_7                          18                            79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       42     13     46
  DEL PEAK  7(3P14.2) WILD-TYPE    169     82    186
D34V9, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          42                           169
  CLUS_2                          13                            82
  CLUS_3                          46                           186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       36     29     36
  DEL PEAK  7(3P14.2) WILD-TYPE    192    110    135
D34V10, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          36                           192
  CLUS_2                          29                           110
  CLUS_3                          36                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED        5      3      6      6      4      3
  DEL PEAK  7(3P14.2) WILD-TYPE     19     17     22     22     14     14
D34V11, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           3                            17
  CLUS_3                           6                            22
  CLUS_4                           6                            22
  CLUS_5                           4                            14
  CLUS_6                           3                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       12      2      5      8
  DEL PEAK  7(3P14.2) WILD-TYPE     43     13     29     23
D34V12, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          12                            43
  CLUS_2                           2                            13
  CLUS_3                           5                            29
  CLUS_4                           8                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  8(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q26.31) MUTATED        3      7      8      2
  DEL PEAK  8(3Q26.31) WILD-TYPE     40     55     61     39
D35V1, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            3                             40
  CLUS_2                            7                             55
  CLUS_3                            8                             61
  CLUS_4                            2                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q26.31) MUTATED        3      4      8      5
  DEL PEAK  8(3Q26.31) WILD-TYPE     46     37     68     44
D35V2, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            3                             46
  CLUS_2                            4                             37
  CLUS_3                            8                             68
  CLUS_4                            5                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED       26     26     12
  DEL PEAK  8(3Q26.31) WILD-TYPE    227    183    141
D35V3, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           26                            227
  CLUS_2                           26                            183
  CLUS_3                           12                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED       10     17     16
  DEL PEAK  8(3Q26.31) WILD-TYPE     92    140    114
D35V4, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           10                             92
  CLUS_2                           17                            140
  CLUS_3                           16                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q26.31) MUTATED        3      8      6     11     12     10
  DEL PEAK  8(3Q26.31) WILD-TYPE     72     78     41     55     96     77
                                vv
clus                             CLUS_7
  DEL PEAK  8(3Q26.31) MUTATED        2
  DEL PEAK  8(3Q26.31) WILD-TYPE     10
D35V5, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            3                             72
  CLUS_2                            8                             78
  CLUS_3                            6                             41
  CLUS_4                           11                             55
  CLUS_5                           12                             96
  CLUS_6                           10                             77
  CLUS_7                            2                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED       24     18     10
  DEL PEAK  8(3Q26.31) WILD-TYPE    204    150     75
D35V6, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           24                            204
  CLUS_2                           18                            150
  CLUS_3                           10                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q26.31) MUTATED       20     12     13     19
  DEL PEAK  8(3Q26.31) WILD-TYPE    128    129    117    174
D35V7, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           20                            128
  CLUS_2                           12                            129
  CLUS_3                           13                            117
  CLUS_4                           19                            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q26.31) MUTATED       13      8      4     10      6     15
  DEL PEAK  8(3Q26.31) WILD-TYPE     67     78     60     47     84    123
                                vv
clus                             CLUS_7
  DEL PEAK  8(3Q26.31) MUTATED        8
  DEL PEAK  8(3Q26.31) WILD-TYPE     89
D35V8, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           13                             67
  CLUS_2                            8                             78
  CLUS_3                            4                             60
  CLUS_4                           10                             47
  CLUS_5                            6                             84
  CLUS_6                           15                            123
  CLUS_7                            8                             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED       25      9     22
  DEL PEAK  8(3Q26.31) WILD-TYPE    186     86    210
D35V9, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           25                            186
  CLUS_2                            9                             86
  CLUS_3                           22                            210
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED       19     19     18
  DEL PEAK  8(3Q26.31) WILD-TYPE    209    120    153
D35V10, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           19                            209
  CLUS_2                           19                            120
  CLUS_3                           18                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q26.31) MUTATED        2      0      3      4      2      5
  DEL PEAK  8(3Q26.31) WILD-TYPE     22     20     25     24     16     12
D35V11, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            2                             22
  CLUS_2                            0                             20
  CLUS_3                            3                             25
  CLUS_4                            4                             24
  CLUS_5                            2                             16
  CLUS_6                            5                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q26.31) MUTATED        6      1      5      4
  DEL PEAK  8(3Q26.31) WILD-TYPE     49     14     29     27
D35V12, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            6                             49
  CLUS_2                            1                             14
  CLUS_3                            5                             29
  CLUS_4                            4                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  9(4P16.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P16.2) MUTATED       12     26     28      8
  DEL PEAK  9(4P16.2) WILD-TYPE     31     36     41     33
D36V1, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          12                            31
  CLUS_2                          26                            36
  CLUS_3                          28                            41
  CLUS_4                           8                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P16.2) MUTATED       11     16     23     24
  DEL PEAK  9(4P16.2) WILD-TYPE     38     25     53     25
D36V2, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          11                            38
  CLUS_2                          16                            25
  CLUS_3                          23                            53
  CLUS_4                          24                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.2) MUTATED       47    108     47
  DEL PEAK  9(4P16.2) WILD-TYPE    206    101    106
D36V3, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          47                           206
  CLUS_2                         108                           101
  CLUS_3                          47                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.2) MUTATED       29     64     32
  DEL PEAK  9(4P16.2) WILD-TYPE     73     93     98
D36V4, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          29                            73
  CLUS_2                          64                            93
  CLUS_3                          32                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P16.2) MUTATED       25     23     17     17     34     24
  DEL PEAK  9(4P16.2) WILD-TYPE     50     63     30     49     74     63
                               vv
clus                            CLUS_7
  DEL PEAK  9(4P16.2) MUTATED        3
  DEL PEAK  9(4P16.2) WILD-TYPE      9
D36V5, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          25                            50
  CLUS_2                          23                            63
  CLUS_3                          17                            30
  CLUS_4                          17                            49
  CLUS_5                          34                            74
  CLUS_6                          24                            63
  CLUS_7                           3                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.2) MUTATED       64     50     29
  DEL PEAK  9(4P16.2) WILD-TYPE    164    118     56
D36V6, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          64                           164
  CLUS_2                          50                           118
  CLUS_3                          29                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P16.2) MUTATED       58     31     45     67
  DEL PEAK  9(4P16.2) WILD-TYPE     90    110     85    126
D36V7, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          58                            90
  CLUS_2                          31                           110
  CLUS_3                          45                            85
  CLUS_4                          67                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P16.2) MUTATED       29     25      6     19     40     57
  DEL PEAK  9(4P16.2) WILD-TYPE     51     61     58     38     50     81
                               vv
clus                            CLUS_7
  DEL PEAK  9(4P16.2) MUTATED       25
  DEL PEAK  9(4P16.2) WILD-TYPE     72
D36V8, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          29                            51
  CLUS_2                          25                            61
  CLUS_3                           6                            58
  CLUS_4                          19                            38
  CLUS_5                          40                            50
  CLUS_6                          57                            81
  CLUS_7                          25                            72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.2) MUTATED       72     25     77
  DEL PEAK  9(4P16.2) WILD-TYPE    139     70    155
D36V9, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          72                           139
  CLUS_2                          25                            70
  CLUS_3                          77                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.2) MUTATED       65     47     62
  DEL PEAK  9(4P16.2) WILD-TYPE    163     92    109
D36V10, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          65                           163
  CLUS_2                          47                            92
  CLUS_3                          62                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P16.2) MUTATED       12      8     11      9      8      1
  DEL PEAK  9(4P16.2) WILD-TYPE     12     12     17     19     10     16
D36V11, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                           8                            12
  CLUS_3                          11                            17
  CLUS_4                           9                            19
  CLUS_5                           8                            10
  CLUS_6                           1                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P16.2) MUTATED       19      5     14     11
  DEL PEAK  9(4P16.2) WILD-TYPE     36     10     20     20
D36V12, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          19                            36
  CLUS_2                           5                            10
  CLUS_3                          14                            20
  CLUS_4                          11                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 10(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       14     27     30      7
  DEL PEAK 10(4Q22.1) WILD-TYPE     29     35     39     34
D37V1, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          14                            29
  CLUS_2                          27                            35
  CLUS_3                          30                            39
  CLUS_4                           7                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       11     18     25     24
  DEL PEAK 10(4Q22.1) WILD-TYPE     38     23     51     25
D37V2, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          11                            38
  CLUS_2                          18                            23
  CLUS_3                          25                            51
  CLUS_4                          24                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       49    116     59
  DEL PEAK 10(4Q22.1) WILD-TYPE    204     93     94
D37V3, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          49                           204
  CLUS_2                         116                            93
  CLUS_3                          59                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       37     74     35
  DEL PEAK 10(4Q22.1) WILD-TYPE     65     83     95
D37V4, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          37                            65
  CLUS_2                          74                            83
  CLUS_3                          35                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED       24     22     16     28     40     31
  DEL PEAK 10(4Q22.1) WILD-TYPE     51     64     31     38     68     56
                               vv
clus                            CLUS_7
  DEL PEAK 10(4Q22.1) MUTATED        4
  DEL PEAK 10(4Q22.1) WILD-TYPE      8
D37V5, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          24                            51
  CLUS_2                          22                            64
  CLUS_3                          16                            31
  CLUS_4                          28                            38
  CLUS_5                          40                            68
  CLUS_6                          31                            56
  CLUS_7                           4                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       76     52     37
  DEL PEAK 10(4Q22.1) WILD-TYPE    152    116     48
D37V6, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          76                           152
  CLUS_2                          52                           116
  CLUS_3                          37                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       67     33     46     77
  DEL PEAK 10(4Q22.1) WILD-TYPE     81    108     84    116
D37V7, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          67                            81
  CLUS_2                          33                           108
  CLUS_3                          46                            84
  CLUS_4                          77                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED       36     24      7     27     41     61
  DEL PEAK 10(4Q22.1) WILD-TYPE     44     62     57     30     49     77
                               vv
clus                            CLUS_7
  DEL PEAK 10(4Q22.1) MUTATED       27
  DEL PEAK 10(4Q22.1) WILD-TYPE     70
D37V8, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          36                            44
  CLUS_2                          24                            62
  CLUS_3                           7                            57
  CLUS_4                          27                            30
  CLUS_5                          41                            49
  CLUS_6                          61                            77
  CLUS_7                          27                            70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       86     23     85
  DEL PEAK 10(4Q22.1) WILD-TYPE    125     72    147
D37V9, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          86                           125
  CLUS_2                          23                            72
  CLUS_3                          85                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       72     58     64
  DEL PEAK 10(4Q22.1) WILD-TYPE    156     81    107
D37V10, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          72                           156
  CLUS_2                          58                            81
  CLUS_3                          64                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED       15      6     15     12     10      3
  DEL PEAK 10(4Q22.1) WILD-TYPE      9     14     13     16      8     14
D37V11, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          15                             9
  CLUS_2                           6                            14
  CLUS_3                          15                            13
  CLUS_4                          12                            16
  CLUS_5                          10                             8
  CLUS_6                           3                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       19      7     18     17
  DEL PEAK 10(4Q22.1) WILD-TYPE     36      8     16     14
D37V12, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          19                            36
  CLUS_2                           7                             8
  CLUS_3                          18                            16
  CLUS_4                          17                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 11(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q35.1) MUTATED       13     29     29      8
  DEL PEAK 11(4Q35.1) WILD-TYPE     30     33     40     33
D38V1, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          13                            30
  CLUS_2                          29                            33
  CLUS_3                          29                            40
  CLUS_4                           8                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q35.1) MUTATED       12     19     25     23
  DEL PEAK 11(4Q35.1) WILD-TYPE     37     22     51     26
D38V2, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          12                            37
  CLUS_2                          19                            22
  CLUS_3                          25                            51
  CLUS_4                          23                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       52    120     61
  DEL PEAK 11(4Q35.1) WILD-TYPE    201     89     92
D38V3, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          52                           201
  CLUS_2                         120                            89
  CLUS_3                          61                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       39     75     36
  DEL PEAK 11(4Q35.1) WILD-TYPE     63     82     94
D38V4, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          39                            63
  CLUS_2                          75                            82
  CLUS_3                          36                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q35.1) MUTATED       31     26     18     21     45     29
  DEL PEAK 11(4Q35.1) WILD-TYPE     44     60     29     45     63     58
                               vv
clus                            CLUS_7
  DEL PEAK 11(4Q35.1) MUTATED        5
  DEL PEAK 11(4Q35.1) WILD-TYPE      7
D38V5, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          31                            44
  CLUS_2                          26                            60
  CLUS_3                          18                            29
  CLUS_4                          21                            45
  CLUS_5                          45                            63
  CLUS_6                          29                            58
  CLUS_7                           5                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       87     53     35
  DEL PEAK 11(4Q35.1) WILD-TYPE    141    115     50
D38V6, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          87                           141
  CLUS_2                          53                           115
  CLUS_3                          35                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q35.1) MUTATED       67     35     54     76
  DEL PEAK 11(4Q35.1) WILD-TYPE     81    106     76    117
D38V7, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          67                            81
  CLUS_2                          35                           106
  CLUS_3                          54                            76
  CLUS_4                          76                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q35.1) MUTATED       38     26      8     26     44     61
  DEL PEAK 11(4Q35.1) WILD-TYPE     42     60     56     31     46     77
                               vv
clus                            CLUS_7
  DEL PEAK 11(4Q35.1) MUTATED       29
  DEL PEAK 11(4Q35.1) WILD-TYPE     68
D38V8, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          38                            42
  CLUS_2                          26                            60
  CLUS_3                           8                            56
  CLUS_4                          26                            31
  CLUS_5                          44                            46
  CLUS_6                          61                            77
  CLUS_7                          29                            68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       88     30     83
  DEL PEAK 11(4Q35.1) WILD-TYPE    123     65    149
D38V9, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          88                           123
  CLUS_2                          30                            65
  CLUS_3                          83                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       80     58     63
  DEL PEAK 11(4Q35.1) WILD-TYPE    148     81    108
D38V10, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          80                           148
  CLUS_2                          58                            81
  CLUS_3                          63                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q35.1) MUTATED       15      7     17     11      9      6
  DEL PEAK 11(4Q35.1) WILD-TYPE      9     13     11     17      9     11
D38V11, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          15                             9
  CLUS_2                           7                            13
  CLUS_3                          17                            11
  CLUS_4                          11                            17
  CLUS_5                           9                             9
  CLUS_6                           6                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q35.1) MUTATED       23      7     18     17
  DEL PEAK 11(4Q35.1) WILD-TYPE     32      8     16     14
D38V12, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          23                            32
  CLUS_2                           7                             8
  CLUS_3                          18                            16
  CLUS_4                          17                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 12(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       10     21     19      1
  DEL PEAK 12(5Q12.1) WILD-TYPE     33     41     50     40
D39V1, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                          21                            41
  CLUS_3                          19                            50
  CLUS_4                           1                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED        9     18      8     16
  DEL PEAK 12(5Q12.1) WILD-TYPE     40     23     68     33
D39V2, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           9                            40
  CLUS_2                          18                            23
  CLUS_3                           8                            68
  CLUS_4                          16                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       27     72     60
  DEL PEAK 12(5Q12.1) WILD-TYPE    226    137     93
D39V3, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          27                           226
  CLUS_2                          72                           137
  CLUS_3                          60                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       24     59     26
  DEL PEAK 12(5Q12.1) WILD-TYPE     78     98    104
D39V4, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          24                            78
  CLUS_2                          59                            98
  CLUS_3                          26                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED       23     19     13     12     28     20
  DEL PEAK 12(5Q12.1) WILD-TYPE     52     67     34     54     80     67
                               vv
clus                            CLUS_7
  DEL PEAK 12(5Q12.1) MUTATED        4
  DEL PEAK 12(5Q12.1) WILD-TYPE      8
D39V5, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          23                            52
  CLUS_2                          19                            67
  CLUS_3                          13                            34
  CLUS_4                          12                            54
  CLUS_5                          28                            80
  CLUS_6                          20                            67
  CLUS_7                           4                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       62     35     22
  DEL PEAK 12(5Q12.1) WILD-TYPE    166    133     63
D39V6, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          62                           166
  CLUS_2                          35                           133
  CLUS_3                          22                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       47     25     38     49
  DEL PEAK 12(5Q12.1) WILD-TYPE    101    116     92    144
D39V7, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          47                           101
  CLUS_2                          25                           116
  CLUS_3                          38                            92
  CLUS_4                          49                           144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED       25     19      4     21     32     43
  DEL PEAK 12(5Q12.1) WILD-TYPE     55     67     60     36     58     95
                               vv
clus                            CLUS_7
  DEL PEAK 12(5Q12.1) MUTATED       15
  DEL PEAK 12(5Q12.1) WILD-TYPE     82
D39V8, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          25                            55
  CLUS_2                          19                            67
  CLUS_3                           4                            60
  CLUS_4                          21                            36
  CLUS_5                          32                            58
  CLUS_6                          43                            95
  CLUS_7                          15                            82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       57     25     55
  DEL PEAK 12(5Q12.1) WILD-TYPE    154     70    177
D39V9, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          57                           154
  CLUS_2                          25                            70
  CLUS_3                          55                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       57     36     44
  DEL PEAK 12(5Q12.1) WILD-TYPE    171    103    127
D39V10, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          57                           171
  CLUS_2                          36                           103
  CLUS_3                          44                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED       12      4     13      7      7      4
  DEL PEAK 12(5Q12.1) WILD-TYPE     12     16     15     21     11     13
D39V11, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                           4                            16
  CLUS_3                          13                            15
  CLUS_4                           7                            21
  CLUS_5                           7                            11
  CLUS_6                           4                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       16      6     12     13
  DEL PEAK 12(5Q12.1) WILD-TYPE     39      9     22     18
D39V12, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          16                            39
  CLUS_2                           6                             9
  CLUS_3                          12                            22
  CLUS_4                          13                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 13(5Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.2) MUTATED       10     23     23      6
  DEL PEAK 13(5Q21.2) WILD-TYPE     33     39     46     35
D40V1, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                          23                            39
  CLUS_3                          23                            46
  CLUS_4                           6                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.2) MUTATED       10     19     16     17
  DEL PEAK 13(5Q21.2) WILD-TYPE     39     22     60     32
D40V2, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          10                            39
  CLUS_2                          19                            22
  CLUS_3                          16                            60
  CLUS_4                          17                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.2) MUTATED       37     81     69
  DEL PEAK 13(5Q21.2) WILD-TYPE    216    128     84
D40V3, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          37                           216
  CLUS_2                          81                           128
  CLUS_3                          69                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.2) MUTATED       28     64     33
  DEL PEAK 13(5Q21.2) WILD-TYPE     74     93     97
D40V4, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          28                            74
  CLUS_2                          64                            93
  CLUS_3                          33                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q21.2) MUTATED       27     22     13     20     31     23
  DEL PEAK 13(5Q21.2) WILD-TYPE     48     64     34     46     77     64
                               vv
clus                            CLUS_7
  DEL PEAK 13(5Q21.2) MUTATED        5
  DEL PEAK 13(5Q21.2) WILD-TYPE      7
D40V5, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          27                            48
  CLUS_2                          22                            64
  CLUS_3                          13                            34
  CLUS_4                          20                            46
  CLUS_5                          31                            77
  CLUS_6                          23                            64
  CLUS_7                           5                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.2) MUTATED       71     43     27
  DEL PEAK 13(5Q21.2) WILD-TYPE    157    125     58
D40V6, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          71                           157
  CLUS_2                          43                           125
  CLUS_3                          27                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.2) MUTATED       53     34     39     60
  DEL PEAK 13(5Q21.2) WILD-TYPE     95    107     91    133
D40V7, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          53                            95
  CLUS_2                          34                           107
  CLUS_3                          39                            91
  CLUS_4                          60                           133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q21.2) MUTATED       28     24      8     20     34     51
  DEL PEAK 13(5Q21.2) WILD-TYPE     52     62     56     37     56     87
                               vv
clus                            CLUS_7
  DEL PEAK 13(5Q21.2) MUTATED       21
  DEL PEAK 13(5Q21.2) WILD-TYPE     76
D40V8, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          28                            52
  CLUS_2                          24                            62
  CLUS_3                           8                            56
  CLUS_4                          20                            37
  CLUS_5                          34                            56
  CLUS_6                          51                            87
  CLUS_7                          21                            76
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.2) MUTATED       69     29     66
  DEL PEAK 13(5Q21.2) WILD-TYPE    142     66    166
D40V9, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          69                           142
  CLUS_2                          29                            66
  CLUS_3                          66                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.2) MUTATED       69     45     50
  DEL PEAK 13(5Q21.2) WILD-TYPE    159     94    121
D40V10, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          69                           159
  CLUS_2                          45                            94
  CLUS_3                          50                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q21.2) MUTATED       12      4     12      9      8      3
  DEL PEAK 13(5Q21.2) WILD-TYPE     12     16     16     19     10     14
D40V11, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                           4                            16
  CLUS_3                          12                            16
  CLUS_4                           9                            19
  CLUS_5                           8                            10
  CLUS_6                           3                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.2) MUTATED       19      5     11     13
  DEL PEAK 13(5Q21.2) WILD-TYPE     36     10     23     18
D40V12, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          19                            36
  CLUS_2                           5                            10
  CLUS_3                          11                            23
  CLUS_4                          13                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 14(5Q22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED        9     23     26      3
  DEL PEAK 14(5Q22.2) WILD-TYPE     34     39     43     38
D41V1, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                           9                            34
  CLUS_2                          23                            39
  CLUS_3                          26                            43
  CLUS_4                           3                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED        9     21     14     17
  DEL PEAK 14(5Q22.2) WILD-TYPE     40     20     62     32
D41V2, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                           9                            40
  CLUS_2                          21                            20
  CLUS_3                          14                            62
  CLUS_4                          17                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       41     81     67
  DEL PEAK 14(5Q22.2) WILD-TYPE    212    128     86
D41V3, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          41                           212
  CLUS_2                          81                           128
  CLUS_3                          67                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       29     64     35
  DEL PEAK 14(5Q22.2) WILD-TYPE     73     93     95
D41V4, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          29                            73
  CLUS_2                          64                            93
  CLUS_3                          35                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q22.2) MUTATED       26     23     14     20     31     25
  DEL PEAK 14(5Q22.2) WILD-TYPE     49     63     33     46     77     62
                               vv
clus                            CLUS_7
  DEL PEAK 14(5Q22.2) MUTATED        5
  DEL PEAK 14(5Q22.2) WILD-TYPE      7
D41V5, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          26                            49
  CLUS_2                          23                            63
  CLUS_3                          14                            33
  CLUS_4                          20                            46
  CLUS_5                          31                            77
  CLUS_6                          25                            62
  CLUS_7                           5                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       71     44     29
  DEL PEAK 14(5Q22.2) WILD-TYPE    157    124     56
D41V6, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          71                           157
  CLUS_2                          44                           124
  CLUS_3                          29                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED       58     34     37     59
  DEL PEAK 14(5Q22.2) WILD-TYPE     90    107     93    134
D41V7, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          58                            90
  CLUS_2                          34                           107
  CLUS_3                          37                            93
  CLUS_4                          59                           134
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q22.2) MUTATED       32     25      8     22     30     53
  DEL PEAK 14(5Q22.2) WILD-TYPE     48     61     56     35     60     85
                               vv
clus                            CLUS_7
  DEL PEAK 14(5Q22.2) MUTATED       18
  DEL PEAK 14(5Q22.2) WILD-TYPE     79
D41V8, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          32                            48
  CLUS_2                          25                            61
  CLUS_3                           8                            56
  CLUS_4                          22                            35
  CLUS_5                          30                            60
  CLUS_6                          53                            85
  CLUS_7                          18                            79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       72     28     67
  DEL PEAK 14(5Q22.2) WILD-TYPE    139     67    165
D41V9, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          72                           139
  CLUS_2                          28                            67
  CLUS_3                          67                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       67     50     50
  DEL PEAK 14(5Q22.2) WILD-TYPE    161     89    121
D41V10, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          67                           161
  CLUS_2                          50                            89
  CLUS_3                          50                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q22.2) MUTATED       13      4     12     11      7      4
  DEL PEAK 14(5Q22.2) WILD-TYPE     11     16     16     17     11     13
D41V11, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                           4                            16
  CLUS_3                          12                            16
  CLUS_4                          11                            17
  CLUS_5                           7                            11
  CLUS_6                           4                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED       19      5     13     14
  DEL PEAK 14(5Q22.2) WILD-TYPE     36     10     21     17
D41V12, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          19                            36
  CLUS_2                           5                            10
  CLUS_3                          13                            21
  CLUS_4                          14                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 15(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED        5      8     10      7
  DEL PEAK 15(6P25.3) WILD-TYPE     38     54     59     34
D42V1, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           5                            38
  CLUS_2                           8                            54
  CLUS_3                          10                            59
  CLUS_4                           7                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED        9      3     13      5
  DEL PEAK 15(6P25.3) WILD-TYPE     40     38     63     44
D42V2, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           9                            40
  CLUS_2                           3                            38
  CLUS_3                          13                            63
  CLUS_4                           5                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       31     24     25
  DEL PEAK 15(6P25.3) WILD-TYPE    222    185    128
D42V3, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          31                           222
  CLUS_2                          24                           185
  CLUS_3                          25                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       14     20     13
  DEL PEAK 15(6P25.3) WILD-TYPE     88    137    117
D42V4, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          14                            88
  CLUS_2                          20                           137
  CLUS_3                          13                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED        9      8     10      5     13     11
  DEL PEAK 15(6P25.3) WILD-TYPE     66     78     37     61     95     76
                               vv
clus                            CLUS_7
  DEL PEAK 15(6P25.3) MUTATED        0
  DEL PEAK 15(6P25.3) WILD-TYPE     12
D42V5, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           9                            66
  CLUS_2                           8                            78
  CLUS_3                          10                            37
  CLUS_4                           5                            61
  CLUS_5                          13                            95
  CLUS_6                          11                            76
  CLUS_7                           0                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       24     19     13
  DEL PEAK 15(6P25.3) WILD-TYPE    204    149     72
D42V6, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          24                           204
  CLUS_2                          19                           149
  CLUS_3                          13                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       22     14     17     27
  DEL PEAK 15(6P25.3) WILD-TYPE    126    127    113    166
D42V7, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          22                           126
  CLUS_2                          14                           127
  CLUS_3                          17                           113
  CLUS_4                          27                           166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED       13      6      9      7     13     15
  DEL PEAK 15(6P25.3) WILD-TYPE     67     80     55     50     77    123
                               vv
clus                            CLUS_7
  DEL PEAK 15(6P25.3) MUTATED       17
  DEL PEAK 15(6P25.3) WILD-TYPE     80
D42V8, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          13                            67
  CLUS_2                           6                            80
  CLUS_3                           9                            55
  CLUS_4                           7                            50
  CLUS_5                          13                            77
  CLUS_6                          15                           123
  CLUS_7                          17                            80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       27     16     30
  DEL PEAK 15(6P25.3) WILD-TYPE    184     79    202
D42V9, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          27                           184
  CLUS_2                          16                            79
  CLUS_3                          30                           202
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       33     16     24
  DEL PEAK 15(6P25.3) WILD-TYPE    195    123    147
D42V10, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          33                           195
  CLUS_2                          16                           123
  CLUS_3                          24                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED        3      1      2      6      2      2
  DEL PEAK 15(6P25.3) WILD-TYPE     21     19     26     22     16     15
D42V11, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           3                            21
  CLUS_2                           1                            19
  CLUS_3                           2                            26
  CLUS_4                           6                            22
  CLUS_5                           2                            16
  CLUS_6                           2                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED        6      1      4      5
  DEL PEAK 15(6P25.3) WILD-TYPE     49     14     30     26
D42V12, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           6                            49
  CLUS_2                           1                            14
  CLUS_3                           4                            30
  CLUS_4                           5                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 16(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED        6     12     15      8
  DEL PEAK 16(6Q26) WILD-TYPE     37     50     54     33
D43V1, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         6                          37
  CLUS_2                        12                          50
  CLUS_3                        15                          54
  CLUS_4                         8                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED        8      7     17      9
  DEL PEAK 16(6Q26) WILD-TYPE     41     34     59     40
D43V2, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         8                          41
  CLUS_2                         7                          34
  CLUS_3                        17                          59
  CLUS_4                         9                          40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       35     32     25
  DEL PEAK 16(6Q26) WILD-TYPE    218    177    128
D43V3, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        35                         218
  CLUS_2                        32                         177
  CLUS_3                        25                         128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       13     20     16
  DEL PEAK 16(6Q26) WILD-TYPE     89    137    114
D43V4, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        13                          89
  CLUS_2                        20                         137
  CLUS_3                        16                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(6Q26) MUTATED       12     15      8      7     10     17      1
  DEL PEAK 16(6Q26) WILD-TYPE     63     71     39     59     98     70     11
D43V5, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        12                          63
  CLUS_2                        15                          71
  CLUS_3                         8                          39
  CLUS_4                         7                          59
  CLUS_5                        10                          98
  CLUS_6                        17                          70
  CLUS_7                         1                          11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       35     18     17
  DEL PEAK 16(6Q26) WILD-TYPE    193    150     68
D43V6, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        35                         193
  CLUS_2                        18                         150
  CLUS_3                        17                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED       16     20     17     39
  DEL PEAK 16(6Q26) WILD-TYPE    132    121    113    154
D43V7, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        16                         132
  CLUS_2                        20                         121
  CLUS_3                        17                         113
  CLUS_4                        39                         154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(6Q26) MUTATED        8      8      7      9     15     21     24
  DEL PEAK 16(6Q26) WILD-TYPE     72     78     57     48     75    117     73
D43V8, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         8                          72
  CLUS_2                         8                          78
  CLUS_3                         7                          57
  CLUS_4                         9                          48
  CLUS_5                        15                          75
  CLUS_6                        21                         117
  CLUS_7                        24                          73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       28     17     41
  DEL PEAK 16(6Q26) WILD-TYPE    183     78    191
D43V9, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        28                         183
  CLUS_2                        17                          78
  CLUS_3                        41                         191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       39     17     30
  DEL PEAK 16(6Q26) WILD-TYPE    189    122    141
D43V10, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        39                         189
  CLUS_2                        17                         122
  CLUS_3                        30                         141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6Q26) MUTATED        2      5      1      6      2      3
  DEL PEAK 16(6Q26) WILD-TYPE     22     15     27     22     16     14
D43V11, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         2                          22
  CLUS_2                         5                          15
  CLUS_3                         1                          27
  CLUS_4                         6                          22
  CLUS_5                         2                          16
  CLUS_6                         3                          14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED        8      1      7      3
  DEL PEAK 16(6Q26) WILD-TYPE     47     14     27     28
D43V12, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         8                          47
  CLUS_2                         1                          14
  CLUS_3                         7                          27
  CLUS_4                         3                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 17(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q31.1) MUTATED        2      2      0      1
  DEL PEAK 17(7Q31.1) WILD-TYPE     41     60     69     40
D44V1, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           2                            41
  CLUS_2                           2                            60
  CLUS_3                           0                            69
  CLUS_4                           1                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q31.1) MUTATED        1      2      1      1
  DEL PEAK 17(7Q31.1) WILD-TYPE     48     39     75     48
D44V2, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           1                            48
  CLUS_2                           2                            39
  CLUS_3                           1                            75
  CLUS_4                           1                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        6      5      6
  DEL PEAK 17(7Q31.1) WILD-TYPE    247    204    147
D44V3, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           6                           247
  CLUS_2                           5                           204
  CLUS_3                           6                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        2      5      4
  DEL PEAK 17(7Q31.1) WILD-TYPE    100    152    126
D44V4, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           2                           100
  CLUS_2                           5                           152
  CLUS_3                           4                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q31.1) MUTATED        0      3      1      1      4      4
  DEL PEAK 17(7Q31.1) WILD-TYPE     75     83     46     65    104     83
                               vv
clus                            CLUS_7
  DEL PEAK 17(7Q31.1) MUTATED        0
  DEL PEAK 17(7Q31.1) WILD-TYPE     12
D44V5, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           0                            75
  CLUS_2                           3                            83
  CLUS_3                           1                            46
  CLUS_4                           1                            65
  CLUS_5                           4                           104
  CLUS_6                           4                            83
  CLUS_7                           0                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        6      4      3
  DEL PEAK 17(7Q31.1) WILD-TYPE    222    164     82
D44V6, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           6                           222
  CLUS_2                           4                           164
  CLUS_3                           3                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q31.1) MUTATED        7      3      2      5
  DEL PEAK 17(7Q31.1) WILD-TYPE    141    138    128    188
D44V7, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           7                           141
  CLUS_2                           3                           138
  CLUS_3                           2                           128
  CLUS_4                           5                           188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q31.1) MUTATED        3      2      1      1      3      4
  DEL PEAK 17(7Q31.1) WILD-TYPE     77     84     63     56     87    134
                               vv
clus                            CLUS_7
  DEL PEAK 17(7Q31.1) MUTATED        3
  DEL PEAK 17(7Q31.1) WILD-TYPE     94
D44V8, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           3                            77
  CLUS_2                           2                            84
  CLUS_3                           1                            63
  CLUS_4                           1                            56
  CLUS_5                           3                            87
  CLUS_6                           4                           134
  CLUS_7                           3                            94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        9      0      7
  DEL PEAK 17(7Q31.1) WILD-TYPE    202     95    225
D44V9, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           9                           202
  CLUS_2                           0                            95
  CLUS_3                           7                           225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        6      4      6
  DEL PEAK 17(7Q31.1) WILD-TYPE    222    135    165
D44V10, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           6                           222
  CLUS_2                           4                           135
  CLUS_3                           6                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q31.1) MUTATED        0      0      0      2      0      1
  DEL PEAK 17(7Q31.1) WILD-TYPE     24     20     28     26     18     16
D44V11, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           0                            24
  CLUS_2                           0                            20
  CLUS_3                           0                            28
  CLUS_4                           2                            26
  CLUS_5                           0                            18
  CLUS_6                           1                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q31.1) MUTATED        1      0      1      1
  DEL PEAK 17(7Q31.1) WILD-TYPE     54     15     33     30
D44V12, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           1                            54
  CLUS_2                           0                            15
  CLUS_3                           1                            33
  CLUS_4                           1                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       17     42     37     11
  DEL PEAK 18(8P23.2) WILD-TYPE     26     20     32     30
D45V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          17                            26
  CLUS_2                          42                            20
  CLUS_3                          37                            32
  CLUS_4                          11                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       14     28     36     29
  DEL PEAK 18(8P23.2) WILD-TYPE     35     13     40     20
D45V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          14                            35
  CLUS_2                          28                            13
  CLUS_3                          36                            40
  CLUS_4                          29                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       45    124    121
  DEL PEAK 18(8P23.2) WILD-TYPE    208     85     32
D45V3, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          45                           208
  CLUS_2                         124                            85
  CLUS_3                         121                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       39     99     44
  DEL PEAK 18(8P23.2) WILD-TYPE     63     58     86
D45V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          39                            63
  CLUS_2                          99                            58
  CLUS_3                          44                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED       40     35     25     33     42     36
  DEL PEAK 18(8P23.2) WILD-TYPE     35     51     22     33     66     51
                               vv
clus                            CLUS_7
  DEL PEAK 18(8P23.2) MUTATED        8
  DEL PEAK 18(8P23.2) WILD-TYPE      4
D45V5, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          40                            35
  CLUS_2                          35                            51
  CLUS_3                          25                            22
  CLUS_4                          33                            33
  CLUS_5                          42                            66
  CLUS_6                          36                            51
  CLUS_7                           8                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED      106     74     39
  DEL PEAK 18(8P23.2) WILD-TYPE    122     94     46
D45V6, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         106                           122
  CLUS_2                          74                            94
  CLUS_3                          39                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       82     42     65    100
  DEL PEAK 18(8P23.2) WILD-TYPE     66     99     65     93
D45V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          82                            66
  CLUS_2                          42                            99
  CLUS_3                          65                            65
  CLUS_4                         100                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED       38     33     10     31     59     83
  DEL PEAK 18(8P23.2) WILD-TYPE     42     53     54     26     31     55
                               vv
clus                            CLUS_7
  DEL PEAK 18(8P23.2) MUTATED       35
  DEL PEAK 18(8P23.2) WILD-TYPE     62
D45V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          38                            42
  CLUS_2                          33                            53
  CLUS_3                          10                            54
  CLUS_4                          31                            26
  CLUS_5                          59                            31
  CLUS_6                          83                            55
  CLUS_7                          35                            62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED      107     37    111
  DEL PEAK 18(8P23.2) WILD-TYPE    104     58    121
D45V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         107                           104
  CLUS_2                          37                            58
  CLUS_3                         111                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       98     79     78
  DEL PEAK 18(8P23.2) WILD-TYPE    130     60     93
D45V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          98                           130
  CLUS_2                          79                            60
  CLUS_3                          78                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED       16      8     15     17     12      2
  DEL PEAK 18(8P23.2) WILD-TYPE      8     12     13     11      6     15
D45V11, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          16                             8
  CLUS_2                           8                            12
  CLUS_3                          15                            13
  CLUS_4                          17                            11
  CLUS_5                          12                             6
  CLUS_6                           2                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       25     10     18     17
  DEL PEAK 18(8P23.2) WILD-TYPE     30      5     16     14
D45V12, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          25                            30
  CLUS_2                          10                             5
  CLUS_3                          18                            16
  CLUS_4                          17                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 19(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P22) MUTATED       16     41     39     13
  DEL PEAK 19(8P22) WILD-TYPE     27     21     30     28
D46V1, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        16                          27
  CLUS_2                        41                          21
  CLUS_3                        39                          30
  CLUS_4                        13                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P22) MUTATED       13     28     39     29
  DEL PEAK 19(8P22) WILD-TYPE     36     13     37     20
D46V2, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        13                          36
  CLUS_2                        28                          13
  CLUS_3                        39                          37
  CLUS_4                        29                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED       50    128    125
  DEL PEAK 19(8P22) WILD-TYPE    203     81     28
D46V3, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        50                         203
  CLUS_2                       128                          81
  CLUS_3                       125                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED       40    104     49
  DEL PEAK 19(8P22) WILD-TYPE     62     53     81
D46V4, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        40                          62
  CLUS_2                       104                          53
  CLUS_3                        49                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 19(8P22) MUTATED       42     39     25     33     45     40      7
  DEL PEAK 19(8P22) WILD-TYPE     33     47     22     33     63     47      5
D46V5, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        42                          33
  CLUS_2                        39                          47
  CLUS_3                        25                          22
  CLUS_4                        33                          33
  CLUS_5                        45                          63
  CLUS_6                        40                          47
  CLUS_7                         7                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED      110     79     42
  DEL PEAK 19(8P22) WILD-TYPE    118     89     43
D46V6, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                       110                         118
  CLUS_2                        79                          89
  CLUS_3                        42                          43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P22) MUTATED       85     48     69    100
  DEL PEAK 19(8P22) WILD-TYPE     63     93     61     93
D46V7, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        85                          63
  CLUS_2                        48                          93
  CLUS_3                        69                          61
  CLUS_4                       100                          93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 19(8P22) MUTATED       38     39     10     32     62     85     36
  DEL PEAK 19(8P22) WILD-TYPE     42     47     54     25     28     53     61
D46V8, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        38                          42
  CLUS_2                        39                          47
  CLUS_3                        10                          54
  CLUS_4                        32                          25
  CLUS_5                        62                          28
  CLUS_6                        85                          53
  CLUS_7                        36                          61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED      111     41    115
  DEL PEAK 19(8P22) WILD-TYPE    100     54    117
D46V9, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                       111                         100
  CLUS_2                        41                          54
  CLUS_3                       115                         117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED      107     81     79
  DEL PEAK 19(8P22) WILD-TYPE    121     58     92
D46V10, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                       107                         121
  CLUS_2                        81                          58
  CLUS_3                        79                          92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P22) MUTATED       16      9     15     17     12      2
  DEL PEAK 19(8P22) WILD-TYPE      8     11     13     11      6     15
D46V11, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        16                           8
  CLUS_2                         9                          11
  CLUS_3                        15                          13
  CLUS_4                        17                          11
  CLUS_5                        12                           6
  CLUS_6                         2                          15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P22) MUTATED       26     10     18     17
  DEL PEAK 19(8P22) WILD-TYPE     29      5     16     14
D46V12, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        26                          29
  CLUS_2                        10                           5
  CLUS_3                        18                          16
  CLUS_4                        17                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 20(8Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8Q11.1) MUTATED        4     10      8      3
  DEL PEAK 20(8Q11.1) WILD-TYPE     39     52     61     38
D47V1, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           4                            39
  CLUS_2                          10                            52
  CLUS_3                           8                            61
  CLUS_4                           3                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8Q11.1) MUTATED        4      9      8      4
  DEL PEAK 20(8Q11.1) WILD-TYPE     45     32     68     45
D47V2, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           4                            45
  CLUS_2                           9                            32
  CLUS_3                           8                            68
  CLUS_4                           4                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8Q11.1) MUTATED       14     30      3
  DEL PEAK 20(8Q11.1) WILD-TYPE    239    179    150
D47V3, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                          14                           239
  CLUS_2                          30                           179
  CLUS_3                           3                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8Q11.1) MUTATED        5     13      6
  DEL PEAK 20(8Q11.1) WILD-TYPE     97    144    124
D47V4, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           5                            97
  CLUS_2                          13                           144
  CLUS_3                           6                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8Q11.1) MUTATED        9      7      4      6      4      5
  DEL PEAK 20(8Q11.1) WILD-TYPE     66     79     43     60    104     82
                               vv
clus                            CLUS_7
  DEL PEAK 20(8Q11.1) MUTATED        2
  DEL PEAK 20(8Q11.1) WILD-TYPE     10
D47V5, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           9                            66
  CLUS_2                           7                            79
  CLUS_3                           4                            43
  CLUS_4                           6                            60
  CLUS_5                           4                           104
  CLUS_6                           5                            82
  CLUS_7                           2                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8Q11.1) MUTATED       14     17      6
  DEL PEAK 20(8Q11.1) WILD-TYPE    214    151     79
D47V6, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                          14                           214
  CLUS_2                          17                           151
  CLUS_3                           6                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8Q11.1) MUTATED       11      7      9     19
  DEL PEAK 20(8Q11.1) WILD-TYPE    137    134    121    174
D47V7, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                          11                           137
  CLUS_2                           7                           134
  CLUS_3                           9                           121
  CLUS_4                          19                           174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8Q11.1) MUTATED        5      4      2      2      7     14
  DEL PEAK 20(8Q11.1) WILD-TYPE     75     82     62     55     83    124
                               vv
clus                            CLUS_7
  DEL PEAK 20(8Q11.1) MUTATED       12
  DEL PEAK 20(8Q11.1) WILD-TYPE     85
D47V8, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           5                            75
  CLUS_2                           4                            82
  CLUS_3                           2                            62
  CLUS_4                           2                            55
  CLUS_5                           7                            83
  CLUS_6                          14                           124
  CLUS_7                          12                            85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8Q11.1) MUTATED       14      5     25
  DEL PEAK 20(8Q11.1) WILD-TYPE    197     90    207
D47V9, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                          14                           197
  CLUS_2                           5                            90
  CLUS_3                          25                           207
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8Q11.1) MUTATED       12     14     18
  DEL PEAK 20(8Q11.1) WILD-TYPE    216    125    153
D47V10, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                          12                           216
  CLUS_2                          14                           125
  CLUS_3                          18                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8Q11.1) MUTATED        3      3      1      1      1      1
  DEL PEAK 20(8Q11.1) WILD-TYPE     21     17     27     27     17     16
D47V11, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           3                            21
  CLUS_2                           3                            17
  CLUS_3                           1                            27
  CLUS_4                           1                            27
  CLUS_5                           1                            17
  CLUS_6                           1                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8Q11.1) MUTATED        4      0      4      2
  DEL PEAK 20(8Q11.1) WILD-TYPE     51     15     30     29
D47V12, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           4                            51
  CLUS_2                           0                            15
  CLUS_3                           4                            30
  CLUS_4                           2                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 21(9P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9P24.2) MUTATED        3      8     13      3
  DEL PEAK 21(9P24.2) WILD-TYPE     40     54     56     38
D48V1, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                           3                            40
  CLUS_2                           8                            54
  CLUS_3                          13                            56
  CLUS_4                           3                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9P24.2) MUTATED        3      6      9      9
  DEL PEAK 21(9P24.2) WILD-TYPE     46     35     67     40
D48V2, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                           3                            46
  CLUS_2                           6                            35
  CLUS_3                           9                            67
  CLUS_4                           9                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9P24.2) MUTATED       21     36     27
  DEL PEAK 21(9P24.2) WILD-TYPE    232    173    126
D48V3, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                          21                           232
  CLUS_2                          36                           173
  CLUS_3                          27                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9P24.2) MUTATED       14     31     13
  DEL PEAK 21(9P24.2) WILD-TYPE     88    126    117
D48V4, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                          14                            88
  CLUS_2                          31                           126
  CLUS_3                          13                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9P24.2) MUTATED        8     11      5     12     15     11
  DEL PEAK 21(9P24.2) WILD-TYPE     67     75     42     54     93     76
                               vv
clus                            CLUS_7
  DEL PEAK 21(9P24.2) MUTATED        3
  DEL PEAK 21(9P24.2) WILD-TYPE      9
D48V5, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                           8                            67
  CLUS_2                          11                            75
  CLUS_3                           5                            42
  CLUS_4                          12                            54
  CLUS_5                          15                            93
  CLUS_6                          11                            76
  CLUS_7                           3                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9P24.2) MUTATED       28     21     16
  DEL PEAK 21(9P24.2) WILD-TYPE    200    147     69
D48V6, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                          28                           200
  CLUS_2                          21                           147
  CLUS_3                          16                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9P24.2) MUTATED       29     11     20     24
  DEL PEAK 21(9P24.2) WILD-TYPE    119    130    110    169
D48V7, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                          29                           119
  CLUS_2                          11                           130
  CLUS_3                          20                           110
  CLUS_4                          24                           169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9P24.2) MUTATED       12      9      4     12     18     23
  DEL PEAK 21(9P24.2) WILD-TYPE     68     77     60     45     72    115
                               vv
clus                            CLUS_7
  DEL PEAK 21(9P24.2) MUTATED        6
  DEL PEAK 21(9P24.2) WILD-TYPE     91
D48V8, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                          12                            68
  CLUS_2                           9                            77
  CLUS_3                           4                            60
  CLUS_4                          12                            45
  CLUS_5                          18                            72
  CLUS_6                          23                           115
  CLUS_7                           6                            91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9P24.2) MUTATED       37     11     28
  DEL PEAK 21(9P24.2) WILD-TYPE    174     84    204
D48V9, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                          37                           174
  CLUS_2                          11                            84
  CLUS_3                          28                           204
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9P24.2) MUTATED       30     29     17
  DEL PEAK 21(9P24.2) WILD-TYPE    198    110    154
D48V10, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                          30                           198
  CLUS_2                          29                           110
  CLUS_3                          17                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9P24.2) MUTATED        6      2      7      7      3      2
  DEL PEAK 21(9P24.2) WILD-TYPE     18     18     21     21     15     15
D48V11, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                           6                            18
  CLUS_2                           2                            18
  CLUS_3                           7                            21
  CLUS_4                           7                            21
  CLUS_5                           3                            15
  CLUS_6                           2                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9P24.2) MUTATED        8      3      8      8
  DEL PEAK 21(9P24.2) WILD-TYPE     47     12     26     23
D48V12, multiclass
        clus
vv       DEL PEAK 21(9P24.2) MUTATED DEL PEAK 21(9P24.2) WILD-TYPE
  CLUS_1                           8                            47
  CLUS_2                           3                            12
  CLUS_3                           8                            26
  CLUS_4                           8                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 22(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P15.3) MUTATED        5      9     18      5
  DEL PEAK 22(10P15.3) WILD-TYPE     38     53     51     36
D49V1, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                            5                             38
  CLUS_2                            9                             53
  CLUS_3                           18                             51
  CLUS_4                            5                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P15.3) MUTATED        5      6     13     13
  DEL PEAK 22(10P15.3) WILD-TYPE     44     35     63     36
D49V2, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                            6                             35
  CLUS_3                           13                             63
  CLUS_4                           13                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P15.3) MUTATED       24     52     39
  DEL PEAK 22(10P15.3) WILD-TYPE    229    157    114
D49V3, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           24                            229
  CLUS_2                           52                            157
  CLUS_3                           39                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P15.3) MUTATED       17     44     16
  DEL PEAK 22(10P15.3) WILD-TYPE     85    113    114
D49V4, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           17                             85
  CLUS_2                           44                            113
  CLUS_3                           16                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10P15.3) MUTATED       19     15      9     12     20     12
  DEL PEAK 22(10P15.3) WILD-TYPE     56     71     38     54     88     75
                                vv
clus                             CLUS_7
  DEL PEAK 22(10P15.3) MUTATED        2
  DEL PEAK 22(10P15.3) WILD-TYPE     10
D49V5, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           19                             56
  CLUS_2                           15                             71
  CLUS_3                            9                             38
  CLUS_4                           12                             54
  CLUS_5                           20                             88
  CLUS_6                           12                             75
  CLUS_7                            2                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P15.3) MUTATED       44     28     17
  DEL PEAK 22(10P15.3) WILD-TYPE    184    140     68
D49V6, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           44                            184
  CLUS_2                           28                            140
  CLUS_3                           17                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P15.3) MUTATED       37     16     26     35
  DEL PEAK 22(10P15.3) WILD-TYPE    111    125    104    158
D49V7, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           37                            111
  CLUS_2                           16                            125
  CLUS_3                           26                            104
  CLUS_4                           35                            158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10P15.3) MUTATED       14     12      3     11     33     29
  DEL PEAK 22(10P15.3) WILD-TYPE     66     74     61     46     57    109
                                vv
clus                             CLUS_7
  DEL PEAK 22(10P15.3) MUTATED       12
  DEL PEAK 22(10P15.3) WILD-TYPE     85
D49V8, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           14                             66
  CLUS_2                           12                             74
  CLUS_3                            3                             61
  CLUS_4                           11                             46
  CLUS_5                           33                             57
  CLUS_6                           29                            109
  CLUS_7                           12                             85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P15.3) MUTATED       43     17     39
  DEL PEAK 22(10P15.3) WILD-TYPE    168     78    193
D49V9, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           43                            168
  CLUS_2                           17                             78
  CLUS_3                           39                            193
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P15.3) MUTATED       43     29     27
  DEL PEAK 22(10P15.3) WILD-TYPE    185    110    144
D49V10, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           43                            185
  CLUS_2                           29                            110
  CLUS_3                           27                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10P15.3) MUTATED        3      7     11      5      6      0
  DEL PEAK 22(10P15.3) WILD-TYPE     21     13     17     23     12     17
D49V11, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                            3                             21
  CLUS_2                            7                             13
  CLUS_3                           11                             17
  CLUS_4                            5                             23
  CLUS_5                            6                             12
  CLUS_6                            0                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P15.3) MUTATED       12      8      5      7
  DEL PEAK 22(10P15.3) WILD-TYPE     43      7     29     24
D49V12, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           12                             43
  CLUS_2                            8                              7
  CLUS_3                            5                             29
  CLUS_4                            7                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 23(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED        6     14     23      5
  DEL PEAK 23(10Q21.1) WILD-TYPE     37     48     46     36
D50V1, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            6                             37
  CLUS_2                           14                             48
  CLUS_3                           23                             46
  CLUS_4                            5                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED        6      9     17     16
  DEL PEAK 23(10Q21.1) WILD-TYPE     43     32     59     33
D50V2, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            6                             43
  CLUS_2                            9                             32
  CLUS_3                           17                             59
  CLUS_4                           16                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       25     67     47
  DEL PEAK 23(10Q21.1) WILD-TYPE    228    142    106
D50V3, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           25                            228
  CLUS_2                           67                            142
  CLUS_3                           47                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       17     51     22
  DEL PEAK 23(10Q21.1) WILD-TYPE     85    106    108
D50V4, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           17                             85
  CLUS_2                           51                            106
  CLUS_3                           22                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q21.1) MUTATED       19     13     10     18     24     16
  DEL PEAK 23(10Q21.1) WILD-TYPE     56     73     37     48     84     71
                                vv
clus                             CLUS_7
  DEL PEAK 23(10Q21.1) MUTATED        4
  DEL PEAK 23(10Q21.1) WILD-TYPE      8
D50V5, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           19                             56
  CLUS_2                           13                             73
  CLUS_3                           10                             37
  CLUS_4                           18                             48
  CLUS_5                           24                             84
  CLUS_6                           16                             71
  CLUS_7                            4                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       48     39     17
  DEL PEAK 23(10Q21.1) WILD-TYPE    180    129     68
D50V6, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           48                            180
  CLUS_2                           39                            129
  CLUS_3                           17                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED       51     17     25     45
  DEL PEAK 23(10Q21.1) WILD-TYPE     97    124    105    148
D50V7, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           51                             97
  CLUS_2                           17                            124
  CLUS_3                           25                            105
  CLUS_4                           45                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q21.1) MUTATED       20     18      3     13     30     38
  DEL PEAK 23(10Q21.1) WILD-TYPE     60     68     61     44     60    100
                                vv
clus                             CLUS_7
  DEL PEAK 23(10Q21.1) MUTATED       16
  DEL PEAK 23(10Q21.1) WILD-TYPE     81
D50V8, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           20                             60
  CLUS_2                           18                             68
  CLUS_3                            3                             61
  CLUS_4                           13                             44
  CLUS_5                           30                             60
  CLUS_6                           38                            100
  CLUS_7                           16                             81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       50     18     51
  DEL PEAK 23(10Q21.1) WILD-TYPE    161     77    181
D50V9, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           50                            161
  CLUS_2                           18                             77
  CLUS_3                           51                            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       44     40     35
  DEL PEAK 23(10Q21.1) WILD-TYPE    184     99    136
D50V10, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           44                            184
  CLUS_2                           40                             99
  CLUS_3                           35                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q21.1) MUTATED        4      5      8      5      6      1
  DEL PEAK 23(10Q21.1) WILD-TYPE     20     15     20     23     12     16
D50V11, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            5                             15
  CLUS_3                            8                             20
  CLUS_4                            5                             23
  CLUS_5                            6                             12
  CLUS_6                            1                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED       13      5      5      6
  DEL PEAK 23(10Q21.1) WILD-TYPE     42     10     29     25
D50V12, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           13                             42
  CLUS_2                            5                             10
  CLUS_3                            5                             29
  CLUS_4                            6                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 24(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED        8     10     23      9
  DEL PEAK 24(10Q23.31) WILD-TYPE     35     52     46     32
D51V1, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             8                              35
  CLUS_2                            10                              52
  CLUS_3                            23                              46
  CLUS_4                             9                              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED        9      6     20     15
  DEL PEAK 24(10Q23.31) WILD-TYPE     40     35     56     34
D51V2, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             9                              40
  CLUS_2                             6                              35
  CLUS_3                            20                              56
  CLUS_4                            15                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       38     68     55
  DEL PEAK 24(10Q23.31) WILD-TYPE    215    141     98
D51V3, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            38                             215
  CLUS_2                            68                             141
  CLUS_3                            55                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       22     56     31
  DEL PEAK 24(10Q23.31) WILD-TYPE     80    101     99
D51V4, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            22                              80
  CLUS_2                            56                             101
  CLUS_3                            31                              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q23.31) MUTATED       21     20     15     14     31     18
  DEL PEAK 24(10Q23.31) WILD-TYPE     54     66     32     52     77     69
                                 vv
clus                              CLUS_7
  DEL PEAK 24(10Q23.31) MUTATED        5
  DEL PEAK 24(10Q23.31) WILD-TYPE      7
D51V5, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            21                              54
  CLUS_2                            20                              66
  CLUS_3                            15                              32
  CLUS_4                            14                              52
  CLUS_5                            31                              77
  CLUS_6                            18                              69
  CLUS_7                             5                               7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       59     45     20
  DEL PEAK 24(10Q23.31) WILD-TYPE    169    123     65
D51V6, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            59                             169
  CLUS_2                            45                             123
  CLUS_3                            20                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED       54     28     32     45
  DEL PEAK 24(10Q23.31) WILD-TYPE     94    113     98    148
D51V7, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            54                              94
  CLUS_2                            28                             113
  CLUS_3                            32                              98
  CLUS_4                            45                             148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q23.31) MUTATED       27     21      4     13     38     33
  DEL PEAK 24(10Q23.31) WILD-TYPE     53     65     60     44     52    105
                                 vv
clus                              CLUS_7
  DEL PEAK 24(10Q23.31) MUTATED       23
  DEL PEAK 24(10Q23.31) WILD-TYPE     74
D51V8, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            27                              53
  CLUS_2                            21                              65
  CLUS_3                             4                              60
  CLUS_4                            13                              44
  CLUS_5                            38                              52
  CLUS_6                            33                             105
  CLUS_7                            23                              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       60     25     55
  DEL PEAK 24(10Q23.31) WILD-TYPE    151     70    177
D51V9, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            60                             151
  CLUS_2                            25                              70
  CLUS_3                            55                             177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       56     45     39
  DEL PEAK 24(10Q23.31) WILD-TYPE    172     94    132
D51V10, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            56                             172
  CLUS_2                            45                              94
  CLUS_3                            39                             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q23.31) MUTATED        5      4     13      8      7      2
  DEL PEAK 24(10Q23.31) WILD-TYPE     19     16     15     20     11     15
D51V11, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             5                              19
  CLUS_2                             4                              16
  CLUS_3                            13                              15
  CLUS_4                             8                              20
  CLUS_5                             7                              11
  CLUS_6                             2                              15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED       13      7      7     12
  DEL PEAK 24(10Q23.31) WILD-TYPE     42      8     27     19
D51V12, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            13                              42
  CLUS_2                             7                               8
  CLUS_3                             7                              27
  CLUS_4                            12                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 25(10Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q25.2) MUTATED        8     13     23      8
  DEL PEAK 25(10Q25.2) WILD-TYPE     35     49     46     33
D52V1, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                           13                             49
  CLUS_3                           23                             46
  CLUS_4                            8                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q25.2) MUTATED        8      8     21     15
  DEL PEAK 25(10Q25.2) WILD-TYPE     41     33     55     34
D52V2, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                            8                             41
  CLUS_2                            8                             33
  CLUS_3                           21                             55
  CLUS_4                           15                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       37     69     51
  DEL PEAK 25(10Q25.2) WILD-TYPE    216    140    102
D52V3, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           37                            216
  CLUS_2                           69                            140
  CLUS_3                           51                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       21     54     27
  DEL PEAK 25(10Q25.2) WILD-TYPE     81    103    103
D52V4, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           21                             81
  CLUS_2                           54                            103
  CLUS_3                           27                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q25.2) MUTATED       23     20     14     16     28     19
  DEL PEAK 25(10Q25.2) WILD-TYPE     52     66     33     50     80     68
                                vv
clus                             CLUS_7
  DEL PEAK 25(10Q25.2) MUTATED        4
  DEL PEAK 25(10Q25.2) WILD-TYPE      8
D52V5, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           23                             52
  CLUS_2                           20                             66
  CLUS_3                           14                             33
  CLUS_4                           16                             50
  CLUS_5                           28                             80
  CLUS_6                           19                             68
  CLUS_7                            4                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       57     44     23
  DEL PEAK 25(10Q25.2) WILD-TYPE    171    124     62
D52V6, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           57                            171
  CLUS_2                           44                            124
  CLUS_3                           23                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q25.2) MUTATED       50     21     32     52
  DEL PEAK 25(10Q25.2) WILD-TYPE     98    120     98    141
D52V7, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           50                             98
  CLUS_2                           21                            120
  CLUS_3                           32                             98
  CLUS_4                           52                            141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q25.2) MUTATED       26     15      2     11     39     35
  DEL PEAK 25(10Q25.2) WILD-TYPE     54     71     62     46     51    103
                                vv
clus                             CLUS_7
  DEL PEAK 25(10Q25.2) MUTATED       27
  DEL PEAK 25(10Q25.2) WILD-TYPE     70
D52V8, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           26                             54
  CLUS_2                           15                             71
  CLUS_3                            2                             62
  CLUS_4                           11                             46
  CLUS_5                           39                             51
  CLUS_6                           35                            103
  CLUS_7                           27                             70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       54     24     58
  DEL PEAK 25(10Q25.2) WILD-TYPE    157     71    174
D52V9, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           54                            157
  CLUS_2                           24                             71
  CLUS_3                           58                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       50     42     44
  DEL PEAK 25(10Q25.2) WILD-TYPE    178     97    127
D52V10, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           50                            178
  CLUS_2                           42                             97
  CLUS_3                           44                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q25.2) MUTATED        6      4     12      9      8      2
  DEL PEAK 25(10Q25.2) WILD-TYPE     18     16     16     19     10     15
D52V11, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            4                             16
  CLUS_3                           12                             16
  CLUS_4                            9                             19
  CLUS_5                            8                             10
  CLUS_6                            2                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q25.2) MUTATED       14      7      9     11
  DEL PEAK 25(10Q25.2) WILD-TYPE     41      8     25     20
D52V12, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           14                             41
  CLUS_2                            7                              8
  CLUS_3                            9                             25
  CLUS_4                           11                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 26(11Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q22.3) MUTATED        6      9     17      9
  DEL PEAK 26(11Q22.3) WILD-TYPE     37     53     52     32
D53V1, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                            6                             37
  CLUS_2                            9                             53
  CLUS_3                           17                             52
  CLUS_4                            9                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q22.3) MUTATED        7      5     20      9
  DEL PEAK 26(11Q22.3) WILD-TYPE     42     36     56     40
D53V2, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                            7                             42
  CLUS_2                            5                             36
  CLUS_3                           20                             56
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q22.3) MUTATED       32     50     29
  DEL PEAK 26(11Q22.3) WILD-TYPE    221    159    124
D53V3, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           32                            221
  CLUS_2                           50                            159
  CLUS_3                           29                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q22.3) MUTATED       22     28     19
  DEL PEAK 26(11Q22.3) WILD-TYPE     80    129    111
D53V4, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           22                             80
  CLUS_2                           28                            129
  CLUS_3                           19                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(11Q22.3) MUTATED       11     15      7     13     19     15
  DEL PEAK 26(11Q22.3) WILD-TYPE     64     71     40     53     89     72
                                vv
clus                             CLUS_7
  DEL PEAK 26(11Q22.3) MUTATED        3
  DEL PEAK 26(11Q22.3) WILD-TYPE      9
D53V5, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                           15                             71
  CLUS_3                            7                             40
  CLUS_4                           13                             53
  CLUS_5                           19                             89
  CLUS_6                           15                             72
  CLUS_7                            3                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q22.3) MUTATED       38     30     15
  DEL PEAK 26(11Q22.3) WILD-TYPE    190    138     70
D53V6, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           38                            190
  CLUS_2                           30                            138
  CLUS_3                           15                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q22.3) MUTATED       24     25     19     42
  DEL PEAK 26(11Q22.3) WILD-TYPE    124    116    111    151
D53V7, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           24                            124
  CLUS_2                           25                            116
  CLUS_3                           19                            111
  CLUS_4                           42                            151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(11Q22.3) MUTATED       15     17      3     13     13     29
  DEL PEAK 26(11Q22.3) WILD-TYPE     65     69     61     44     77    109
                                vv
clus                             CLUS_7
  DEL PEAK 26(11Q22.3) MUTATED       20
  DEL PEAK 26(11Q22.3) WILD-TYPE     77
D53V8, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           15                             65
  CLUS_2                           17                             69
  CLUS_3                            3                             61
  CLUS_4                           13                             44
  CLUS_5                           13                             77
  CLUS_6                           29                            109
  CLUS_7                           20                             77
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q22.3) MUTATED       37     18     46
  DEL PEAK 26(11Q22.3) WILD-TYPE    174     77    186
D53V9, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           37                            174
  CLUS_2                           18                             77
  CLUS_3                           46                            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q22.3) MUTATED       41     23     37
  DEL PEAK 26(11Q22.3) WILD-TYPE    187    116    134
D53V10, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           41                            187
  CLUS_2                           23                            116
  CLUS_3                           37                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(11Q22.3) MUTATED        6      5      2      3      4      3
  DEL PEAK 26(11Q22.3) WILD-TYPE     18     15     26     25     14     14
D53V11, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            5                             15
  CLUS_3                            2                             26
  CLUS_4                            3                             25
  CLUS_5                            4                             14
  CLUS_6                            3                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q22.3) MUTATED       12      1      7      3
  DEL PEAK 26(11Q22.3) WILD-TYPE     43     14     27     28
D53V12, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           12                             43
  CLUS_2                            1                             14
  CLUS_3                            7                             27
  CLUS_4                            3                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 27(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.1) MUTATED        2     14     11      1
  DEL PEAK 27(12P13.1) WILD-TYPE     41     48     58     40
D54V1, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                            2                             41
  CLUS_2                           14                             48
  CLUS_3                           11                             58
  CLUS_4                            1                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.1) MUTATED        0      9     10      9
  DEL PEAK 27(12P13.1) WILD-TYPE     49     32     66     40
D54V2, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                            0                             49
  CLUS_2                            9                             32
  CLUS_3                           10                             66
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.1) MUTATED       11     53     28
  DEL PEAK 27(12P13.1) WILD-TYPE    242    156    125
D54V3, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           11                            242
  CLUS_2                           53                            156
  CLUS_3                           28                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.1) MUTATED       11     35     20
  DEL PEAK 27(12P13.1) WILD-TYPE     91    122    110
D54V4, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           11                             91
  CLUS_2                           35                            122
  CLUS_3                           20                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12P13.1) MUTATED        7     15      7     13     19     10
  DEL PEAK 27(12P13.1) WILD-TYPE     68     71     40     53     89     77
                                vv
clus                             CLUS_7
  DEL PEAK 27(12P13.1) MUTATED        1
  DEL PEAK 27(12P13.1) WILD-TYPE     11
D54V5, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                            7                             68
  CLUS_2                           15                             71
  CLUS_3                            7                             40
  CLUS_4                           13                             53
  CLUS_5                           19                             89
  CLUS_6                           10                             77
  CLUS_7                            1                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.1) MUTATED       37     23     12
  DEL PEAK 27(12P13.1) WILD-TYPE    191    145     73
D54V6, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           37                            191
  CLUS_2                           23                            145
  CLUS_3                           12                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.1) MUTATED       31     14     18     29
  DEL PEAK 27(12P13.1) WILD-TYPE    117    127    112    164
D54V7, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           31                            117
  CLUS_2                           14                            127
  CLUS_3                           18                            112
  CLUS_4                           29                            164
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12P13.1) MUTATED       18     12      1     12     16     25
  DEL PEAK 27(12P13.1) WILD-TYPE     62     74     63     45     74    113
                                vv
clus                             CLUS_7
  DEL PEAK 27(12P13.1) MUTATED        8
  DEL PEAK 27(12P13.1) WILD-TYPE     89
D54V8, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           18                             62
  CLUS_2                           12                             74
  CLUS_3                            1                             63
  CLUS_4                           12                             45
  CLUS_5                           16                             74
  CLUS_6                           25                            113
  CLUS_7                            8                             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.1) MUTATED       35     15     32
  DEL PEAK 27(12P13.1) WILD-TYPE    176     80    200
D54V9, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           35                            176
  CLUS_2                           15                             80
  CLUS_3                           32                            200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.1) MUTATED       33     24     25
  DEL PEAK 27(12P13.1) WILD-TYPE    195    115    146
D54V10, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           33                            195
  CLUS_2                           24                            115
  CLUS_3                           25                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12P13.1) MUTATED        2      1     10      7      2      1
  DEL PEAK 27(12P13.1) WILD-TYPE     22     19     18     21     16     16
D54V11, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                            2                             22
  CLUS_2                            1                             19
  CLUS_3                           10                             18
  CLUS_4                            7                             21
  CLUS_5                            2                             16
  CLUS_6                            1                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.1) MUTATED        6      4      3     10
  DEL PEAK 27(12P13.1) WILD-TYPE     49     11     31     21
D54V12, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                            6                             49
  CLUS_2                            4                             11
  CLUS_3                            3                             31
  CLUS_4                           10                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 28(12Q21.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q21.33) MUTATED        4     15     12      2
  DEL PEAK 28(12Q21.33) WILD-TYPE     39     47     57     39
D55V1, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                             4                              39
  CLUS_2                            15                              47
  CLUS_3                            12                              57
  CLUS_4                             2                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q21.33) MUTATED        3     10      9     11
  DEL PEAK 28(12Q21.33) WILD-TYPE     46     31     67     38
D55V2, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                             3                              46
  CLUS_2                            10                              31
  CLUS_3                             9                              67
  CLUS_4                            11                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q21.33) MUTATED       13     48     29
  DEL PEAK 28(12Q21.33) WILD-TYPE    240    161    124
D55V3, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            13                             240
  CLUS_2                            48                             161
  CLUS_3                            29                             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q21.33) MUTATED       13     30     15
  DEL PEAK 28(12Q21.33) WILD-TYPE     89    127    115
D55V4, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            13                              89
  CLUS_2                            30                             127
  CLUS_3                            15                             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q21.33) MUTATED       11     10      5      9     17     12
  DEL PEAK 28(12Q21.33) WILD-TYPE     64     76     42     57     91     75
                                 vv
clus                              CLUS_7
  DEL PEAK 28(12Q21.33) MUTATED        1
  DEL PEAK 28(12Q21.33) WILD-TYPE     11
D55V5, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            11                              64
  CLUS_2                            10                              76
  CLUS_3                             5                              42
  CLUS_4                             9                              57
  CLUS_5                            17                              91
  CLUS_6                            12                              75
  CLUS_7                             1                              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q21.33) MUTATED       37     15     13
  DEL PEAK 28(12Q21.33) WILD-TYPE    191    153     72
D55V6, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            37                             191
  CLUS_2                            15                             153
  CLUS_3                            13                              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q21.33) MUTATED       28     13     17     32
  DEL PEAK 28(12Q21.33) WILD-TYPE    120    128    113    161
D55V7, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            28                             120
  CLUS_2                            13                             128
  CLUS_3                            17                             113
  CLUS_4                            32                             161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q21.33) MUTATED       16      4      3     10     21     26
  DEL PEAK 28(12Q21.33) WILD-TYPE     64     82     61     47     69    112
                                 vv
clus                              CLUS_7
  DEL PEAK 28(12Q21.33) MUTATED       10
  DEL PEAK 28(12Q21.33) WILD-TYPE     87
D55V8, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            16                              64
  CLUS_2                             4                              82
  CLUS_3                             3                              61
  CLUS_4                            10                              47
  CLUS_5                            21                              69
  CLUS_6                            26                             112
  CLUS_7                            10                              87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q21.33) MUTATED       32     12     32
  DEL PEAK 28(12Q21.33) WILD-TYPE    179     83    200
D55V9, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            32                             179
  CLUS_2                            12                              83
  CLUS_3                            32                             200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q21.33) MUTATED       30     22     24
  DEL PEAK 28(12Q21.33) WILD-TYPE    198    117    147
D55V10, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            30                             198
  CLUS_2                            22                             117
  CLUS_3                            24                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q21.33) MUTATED        3      3      8      4      2      1
  DEL PEAK 28(12Q21.33) WILD-TYPE     21     17     20     24     16     16
D55V11, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                             3                              21
  CLUS_2                             3                              17
  CLUS_3                             8                              20
  CLUS_4                             4                              24
  CLUS_5                             2                              16
  CLUS_6                             1                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q21.33) MUTATED        8      5      3      5
  DEL PEAK 28(12Q21.33) WILD-TYPE     47     10     31     26
D55V12, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                             8                              47
  CLUS_2                             5                              10
  CLUS_3                             3                              31
  CLUS_4                             5                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 29(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q11.2) MUTATED        8     31     34      6
  DEL PEAK 29(14Q11.2) WILD-TYPE     35     31     35     35
D56V1, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                           31                             31
  CLUS_3                           34                             35
  CLUS_4                            6                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q11.2) MUTATED        5     21     28     25
  DEL PEAK 29(14Q11.2) WILD-TYPE     44     20     48     24
D56V2, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                           21                             20
  CLUS_3                           28                             48
  CLUS_4                           25                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q11.2) MUTATED       35    144     33
  DEL PEAK 29(14Q11.2) WILD-TYPE    218     65    120
D56V3, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           35                            218
  CLUS_2                          144                             65
  CLUS_3                           33                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q11.2) MUTATED       30     73     29
  DEL PEAK 29(14Q11.2) WILD-TYPE     72     84    101
D56V4, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           30                             72
  CLUS_2                           73                             84
  CLUS_3                           29                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(14Q11.2) MUTATED       23     35     19     23     31     33
  DEL PEAK 29(14Q11.2) WILD-TYPE     52     51     28     43     77     54
                                vv
clus                             CLUS_7
  DEL PEAK 29(14Q11.2) MUTATED        4
  DEL PEAK 29(14Q11.2) WILD-TYPE      8
D56V5, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           23                             52
  CLUS_2                           35                             51
  CLUS_3                           19                             28
  CLUS_4                           23                             43
  CLUS_5                           31                             77
  CLUS_6                           33                             54
  CLUS_7                            4                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q11.2) MUTATED       72     54     42
  DEL PEAK 29(14Q11.2) WILD-TYPE    156    114     43
D56V6, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           72                            156
  CLUS_2                           54                            114
  CLUS_3                           42                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q11.2) MUTATED       79     27     28     77
  DEL PEAK 29(14Q11.2) WILD-TYPE     69    114    102    116
D56V7, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           79                             69
  CLUS_2                           27                            114
  CLUS_3                           28                            102
  CLUS_4                           77                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(14Q11.2) MUTATED       37     25      3     23     38     67
  DEL PEAK 29(14Q11.2) WILD-TYPE     43     61     61     34     52     71
                                vv
clus                             CLUS_7
  DEL PEAK 29(14Q11.2) MUTATED       18
  DEL PEAK 29(14Q11.2) WILD-TYPE     79
D56V8, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           37                             43
  CLUS_2                           25                             61
  CLUS_3                            3                             61
  CLUS_4                           23                             34
  CLUS_5                           38                             52
  CLUS_6                           67                             71
  CLUS_7                           18                             79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q11.2) MUTATED       82     24     76
  DEL PEAK 29(14Q11.2) WILD-TYPE    129     71    156
D56V9, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           82                            129
  CLUS_2                           24                             71
  CLUS_3                           76                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q11.2) MUTATED       72     57     53
  DEL PEAK 29(14Q11.2) WILD-TYPE    156     82    118
D56V10, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           72                            156
  CLUS_2                           57                             82
  CLUS_3                           53                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(14Q11.2) MUTATED       13      6     12     14     10      2
  DEL PEAK 29(14Q11.2) WILD-TYPE     11     14     16     14      8     15
D56V11, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                            6                             14
  CLUS_3                           12                             16
  CLUS_4                           14                             14
  CLUS_5                           10                              8
  CLUS_6                            2                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q11.2) MUTATED       16      6     17     18
  DEL PEAK 29(14Q11.2) WILD-TYPE     39      9     17     13
D56V12, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           16                             39
  CLUS_2                            6                              9
  CLUS_3                           17                             17
  CLUS_4                           18                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 30(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q31.1) MUTATED       11     30     34      7
  DEL PEAK 30(14Q31.1) WILD-TYPE     32     32     35     34
D57V1, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           11                             32
  CLUS_2                           30                             32
  CLUS_3                           34                             35
  CLUS_4                            7                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q31.1) MUTATED        8     20     28     26
  DEL PEAK 30(14Q31.1) WILD-TYPE     41     21     48     23
D57V2, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                            8                             41
  CLUS_2                           20                             21
  CLUS_3                           28                             48
  CLUS_4                           26                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q31.1) MUTATED       40    144     34
  DEL PEAK 30(14Q31.1) WILD-TYPE    213     65    119
D57V3, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           40                            213
  CLUS_2                          144                             65
  CLUS_3                           34                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q31.1) MUTATED       29     74     32
  DEL PEAK 30(14Q31.1) WILD-TYPE     73     83     98
D57V4, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           29                             73
  CLUS_2                           74                             83
  CLUS_3                           32                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q31.1) MUTATED       25     31     19     29     31     34
  DEL PEAK 30(14Q31.1) WILD-TYPE     50     55     28     37     77     53
                                vv
clus                             CLUS_7
  DEL PEAK 30(14Q31.1) MUTATED        4
  DEL PEAK 30(14Q31.1) WILD-TYPE      8
D57V5, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           25                             50
  CLUS_2                           31                             55
  CLUS_3                           19                             28
  CLUS_4                           29                             37
  CLUS_5                           31                             77
  CLUS_6                           34                             53
  CLUS_7                            4                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q31.1) MUTATED       73     59     41
  DEL PEAK 30(14Q31.1) WILD-TYPE    155    109     44
D57V6, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           73                            155
  CLUS_2                           59                            109
  CLUS_3                           41                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q31.1) MUTATED       79     28     30     80
  DEL PEAK 30(14Q31.1) WILD-TYPE     69    113    100    113
D57V7, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           79                             69
  CLUS_2                           28                            113
  CLUS_3                           30                            100
  CLUS_4                           80                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q31.1) MUTATED       36     26      6     24     36     68
  DEL PEAK 30(14Q31.1) WILD-TYPE     44     60     58     33     54     70
                                vv
clus                             CLUS_7
  DEL PEAK 30(14Q31.1) MUTATED       21
  DEL PEAK 30(14Q31.1) WILD-TYPE     76
D57V8, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           36                             44
  CLUS_2                           26                             60
  CLUS_3                            6                             58
  CLUS_4                           24                             33
  CLUS_5                           36                             54
  CLUS_6                           68                             70
  CLUS_7                           21                             76
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q31.1) MUTATED       81     27     81
  DEL PEAK 30(14Q31.1) WILD-TYPE    130     68    151
D57V9, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           81                            130
  CLUS_2                           27                             68
  CLUS_3                           81                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q31.1) MUTATED       72     59     58
  DEL PEAK 30(14Q31.1) WILD-TYPE    156     80    113
D57V10, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           72                            156
  CLUS_2                           59                             80
  CLUS_3                           58                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q31.1) MUTATED       12      6     13     14      9      4
  DEL PEAK 30(14Q31.1) WILD-TYPE     12     14     15     14      9     13
D57V11, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                            6                             14
  CLUS_3                           13                             15
  CLUS_4                           14                             14
  CLUS_5                            9                              9
  CLUS_6                            4                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q31.1) MUTATED       17      6     17     18
  DEL PEAK 30(14Q31.1) WILD-TYPE     38      9     17     13
D57V12, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           17                             38
  CLUS_2                            6                              9
  CLUS_3                           17                             17
  CLUS_4                           18                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 31(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q11.2) MUTATED       12     33     37      9
  DEL PEAK 31(15Q11.2) WILD-TYPE     31     29     32     32
D58V1, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           12                             31
  CLUS_2                           33                             29
  CLUS_3                           37                             32
  CLUS_4                            9                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q11.2) MUTATED       12     23     29     27
  DEL PEAK 31(15Q11.2) WILD-TYPE     37     18     47     22
D58V2, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           12                             37
  CLUS_2                           23                             18
  CLUS_3                           29                             47
  CLUS_4                           27                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q11.2) MUTATED       47    136     70
  DEL PEAK 31(15Q11.2) WILD-TYPE    206     73     83
D58V3, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           47                            206
  CLUS_2                          136                             73
  CLUS_3                           70                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q11.2) MUTATED       36     84     41
  DEL PEAK 31(15Q11.2) WILD-TYPE     66     73     89
D58V4, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           36                             66
  CLUS_2                           84                             73
  CLUS_3                           41                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q11.2) MUTATED       26     40     20     28     42     28
  DEL PEAK 31(15Q11.2) WILD-TYPE     49     46     27     38     66     59
                                vv
clus                             CLUS_7
  DEL PEAK 31(15Q11.2) MUTATED        7
  DEL PEAK 31(15Q11.2) WILD-TYPE      5
D58V5, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           26                             49
  CLUS_2                           40                             46
  CLUS_3                           20                             27
  CLUS_4                           28                             38
  CLUS_5                           42                             66
  CLUS_6                           28                             59
  CLUS_7                            7                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q11.2) MUTATED       93     64     34
  DEL PEAK 31(15Q11.2) WILD-TYPE    135    104     51
D58V6, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           93                            135
  CLUS_2                           64                            104
  CLUS_3                           34                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q11.2) MUTATED       77     36     52     87
  DEL PEAK 31(15Q11.2) WILD-TYPE     71    105     78    106
D58V7, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           77                             71
  CLUS_2                           36                            105
  CLUS_3                           52                             78
  CLUS_4                           87                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q11.2) MUTATED       39     32      5     23     52     66
  DEL PEAK 31(15Q11.2) WILD-TYPE     41     54     59     34     38     72
                                vv
clus                             CLUS_7
  DEL PEAK 31(15Q11.2) MUTATED       35
  DEL PEAK 31(15Q11.2) WILD-TYPE     62
D58V8, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           39                             41
  CLUS_2                           32                             54
  CLUS_3                            5                             59
  CLUS_4                           23                             34
  CLUS_5                           52                             38
  CLUS_6                           66                             72
  CLUS_7                           35                             62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q11.2) MUTATED       92     34     93
  DEL PEAK 31(15Q11.2) WILD-TYPE    119     61    139
D58V9, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           92                            119
  CLUS_2                           34                             61
  CLUS_3                           93                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q11.2) MUTATED       90     63     66
  DEL PEAK 31(15Q11.2) WILD-TYPE    138     76    105
D58V10, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           90                            138
  CLUS_2                           63                             76
  CLUS_3                           66                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q11.2) MUTATED       13      9     17     18     10      3
  DEL PEAK 31(15Q11.2) WILD-TYPE     11     11     11     10      8     14
D58V11, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                            9                             11
  CLUS_3                           17                             11
  CLUS_4                           18                             10
  CLUS_5                           10                              8
  CLUS_6                            3                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q11.2) MUTATED       23     12     18     17
  DEL PEAK 31(15Q11.2) WILD-TYPE     32      3     16     14
D58V12, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           23                             32
  CLUS_2                           12                              3
  CLUS_3                           18                             16
  CLUS_4                           17                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 32(15Q15.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.2) MUTATED       11     34     39      8
  DEL PEAK 32(15Q15.2) WILD-TYPE     32     28     30     33
D59V1, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           11                             32
  CLUS_2                           34                             28
  CLUS_3                           39                             30
  CLUS_4                            8                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.2) MUTATED       11     24     31     26
  DEL PEAK 32(15Q15.2) WILD-TYPE     38     17     45     23
D59V2, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           11                             38
  CLUS_2                           24                             17
  CLUS_3                           31                             45
  CLUS_4                           26                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.2) MUTATED       48    134     69
  DEL PEAK 32(15Q15.2) WILD-TYPE    205     75     84
D59V3, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           48                            205
  CLUS_2                          134                             75
  CLUS_3                           69                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.2) MUTATED       36     84     38
  DEL PEAK 32(15Q15.2) WILD-TYPE     66     73     92
D59V4, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           36                             66
  CLUS_2                           84                             73
  CLUS_3                           38                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q15.2) MUTATED       25     39     21     25     40     29
  DEL PEAK 32(15Q15.2) WILD-TYPE     50     47     26     41     68     58
                                vv
clus                             CLUS_7
  DEL PEAK 32(15Q15.2) MUTATED        7
  DEL PEAK 32(15Q15.2) WILD-TYPE      5
D59V5, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           25                             50
  CLUS_2                           39                             47
  CLUS_3                           21                             26
  CLUS_4                           25                             41
  CLUS_5                           40                             68
  CLUS_6                           29                             58
  CLUS_7                            7                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.2) MUTATED       90     60     36
  DEL PEAK 32(15Q15.2) WILD-TYPE    138    108     49
D59V6, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           90                            138
  CLUS_2                           60                            108
  CLUS_3                           36                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.2) MUTATED       78     39     48     85
  DEL PEAK 32(15Q15.2) WILD-TYPE     70    102     82    108
D59V7, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           78                             70
  CLUS_2                           39                            102
  CLUS_3                           48                             82
  CLUS_4                           85                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q15.2) MUTATED       41     32      5     23     47     66
  DEL PEAK 32(15Q15.2) WILD-TYPE     39     54     59     34     43     72
                                vv
clus                             CLUS_7
  DEL PEAK 32(15Q15.2) MUTATED       36
  DEL PEAK 32(15Q15.2) WILD-TYPE     61
D59V8, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           41                             39
  CLUS_2                           32                             54
  CLUS_3                            5                             59
  CLUS_4                           23                             34
  CLUS_5                           47                             43
  CLUS_6                           66                             72
  CLUS_7                           36                             61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.2) MUTATED       88     34     93
  DEL PEAK 32(15Q15.2) WILD-TYPE    123     61    139
D59V9, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           88                            123
  CLUS_2                           34                             61
  CLUS_3                           93                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.2) MUTATED       86     62     67
  DEL PEAK 32(15Q15.2) WILD-TYPE    142     77    104
D59V10, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           86                            142
  CLUS_2                           62                             77
  CLUS_3                           67                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q15.2) MUTATED       14      9     15     18     10      3
  DEL PEAK 32(15Q15.2) WILD-TYPE     10     11     13     10      8     14
D59V11, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                            9                             11
  CLUS_3                           15                             13
  CLUS_4                           18                             10
  CLUS_5                           10                              8
  CLUS_6                            3                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.2) MUTATED       24     10     18     17
  DEL PEAK 32(15Q15.2) WILD-TYPE     31      5     16     14
D59V12, multiclass
        clus
vv       DEL PEAK 32(15Q15.2) MUTATED DEL PEAK 32(15Q15.2) WILD-TYPE
  CLUS_1                           24                             31
  CLUS_2                           10                              5
  CLUS_3                           18                             16
  CLUS_4                           17                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 33(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q21.1) MUTATED       14     33     38      8
  DEL PEAK 33(15Q21.1) WILD-TYPE     29     29     31     33
D60V1, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           14                             29
  CLUS_2                           33                             29
  CLUS_3                           38                             31
  CLUS_4                            8                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q21.1) MUTATED       14     23     30     26
  DEL PEAK 33(15Q21.1) WILD-TYPE     35     18     46     23
D60V2, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           14                             35
  CLUS_2                           23                             18
  CLUS_3                           30                             46
  CLUS_4                           26                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q21.1) MUTATED       48    131     69
  DEL PEAK 33(15Q21.1) WILD-TYPE    205     78     84
D60V3, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           48                            205
  CLUS_2                          131                             78
  CLUS_3                           69                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q21.1) MUTATED       35     82     37
  DEL PEAK 33(15Q21.1) WILD-TYPE     67     75     93
D60V4, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           35                             67
  CLUS_2                           82                             75
  CLUS_3                           37                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q21.1) MUTATED       24     39     20     25     41     29
  DEL PEAK 33(15Q21.1) WILD-TYPE     51     47     27     41     67     58
                                vv
clus                             CLUS_7
  DEL PEAK 33(15Q21.1) MUTATED        8
  DEL PEAK 33(15Q21.1) WILD-TYPE      4
D60V5, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           24                             51
  CLUS_2                           39                             47
  CLUS_3                           20                             27
  CLUS_4                           25                             41
  CLUS_5                           41                             67
  CLUS_6                           29                             58
  CLUS_7                            8                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q21.1) MUTATED       90     61     35
  DEL PEAK 33(15Q21.1) WILD-TYPE    138    107     50
D60V6, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           90                            138
  CLUS_2                           61                            107
  CLUS_3                           35                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q21.1) MUTATED       76     39     47     85
  DEL PEAK 33(15Q21.1) WILD-TYPE     72    102     83    108
D60V7, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           76                             72
  CLUS_2                           39                            102
  CLUS_3                           47                             83
  CLUS_4                           85                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q21.1) MUTATED       39     31      5     23     46     65
  DEL PEAK 33(15Q21.1) WILD-TYPE     41     55     59     34     44     73
                                vv
clus                             CLUS_7
  DEL PEAK 33(15Q21.1) MUTATED       38
  DEL PEAK 33(15Q21.1) WILD-TYPE     59
D60V8, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           39                             41
  CLUS_2                           31                             55
  CLUS_3                            5                             59
  CLUS_4                           23                             34
  CLUS_5                           46                             44
  CLUS_6                           65                             73
  CLUS_7                           38                             59
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q21.1) MUTATED       87     34     93
  DEL PEAK 33(15Q21.1) WILD-TYPE    124     61    139
D60V9, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           87                            124
  CLUS_2                           34                             61
  CLUS_3                           93                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q21.1) MUTATED       85     61     68
  DEL PEAK 33(15Q21.1) WILD-TYPE    143     78    103
D60V10, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           85                            143
  CLUS_2                           61                             78
  CLUS_3                           68                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q21.1) MUTATED       13      9     15     18     10      3
  DEL PEAK 33(15Q21.1) WILD-TYPE     11     11     13     10      8     14
D60V11, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                            9                             11
  CLUS_3                           15                             13
  CLUS_4                           18                             10
  CLUS_5                           10                              8
  CLUS_6                            3                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q21.1) MUTATED       24     10     17     17
  DEL PEAK 33(15Q21.1) WILD-TYPE     31      5     17     14
D60V12, multiclass
        clus
vv       DEL PEAK 33(15Q21.1) MUTATED DEL PEAK 33(15Q21.1) WILD-TYPE
  CLUS_1                           24                             31
  CLUS_2                           10                              5
  CLUS_3                           17                             17
  CLUS_4                           17                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 34(15Q22.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q22.33) MUTATED       12     31     36      6
  DEL PEAK 34(15Q22.33) WILD-TYPE     31     31     33     35
D61V1, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            12                              31
  CLUS_2                            31                              31
  CLUS_3                            36                              33
  CLUS_4                             6                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q22.33) MUTATED       11     21     25     28
  DEL PEAK 34(15Q22.33) WILD-TYPE     38     20     51     21
D61V2, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            11                              38
  CLUS_2                            21                              20
  CLUS_3                            25                              51
  CLUS_4                            28                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q22.33) MUTATED       41    129     68
  DEL PEAK 34(15Q22.33) WILD-TYPE    212     80     85
D61V3, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            41                             212
  CLUS_2                           129                              80
  CLUS_3                            68                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q22.33) MUTATED       34     83     35
  DEL PEAK 34(15Q22.33) WILD-TYPE     68     74     95
D61V4, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            34                              68
  CLUS_2                            83                              74
  CLUS_3                            35                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(15Q22.33) MUTATED       29     37     21     22     39     24
  DEL PEAK 34(15Q22.33) WILD-TYPE     46     49     26     44     69     63
                                 vv
clus                              CLUS_7
  DEL PEAK 34(15Q22.33) MUTATED        7
  DEL PEAK 34(15Q22.33) WILD-TYPE      5
D61V5, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            29                              46
  CLUS_2                            37                              49
  CLUS_3                            21                              26
  CLUS_4                            22                              44
  CLUS_5                            39                              69
  CLUS_6                            24                              63
  CLUS_7                             7                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q22.33) MUTATED       91     57     31
  DEL PEAK 34(15Q22.33) WILD-TYPE    137    111     54
D61V6, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            91                             137
  CLUS_2                            57                             111
  CLUS_3                            31                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q22.33) MUTATED       74     32     49     82
  DEL PEAK 34(15Q22.33) WILD-TYPE     74    109     81    111
D61V7, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            74                              74
  CLUS_2                            32                             109
  CLUS_3                            49                              81
  CLUS_4                            82                             111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(15Q22.33) MUTATED       37     29      3     23     50     64
  DEL PEAK 34(15Q22.33) WILD-TYPE     43     57     61     34     40     74
                                 vv
clus                              CLUS_7
  DEL PEAK 34(15Q22.33) MUTATED       31
  DEL PEAK 34(15Q22.33) WILD-TYPE     66
D61V8, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            37                              43
  CLUS_2                            29                              57
  CLUS_3                             3                              61
  CLUS_4                            23                              34
  CLUS_5                            50                              40
  CLUS_6                            64                              74
  CLUS_7                            31                              66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q22.33) MUTATED       84     36     85
  DEL PEAK 34(15Q22.33) WILD-TYPE    127     59    147
D61V9, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            84                             127
  CLUS_2                            36                              59
  CLUS_3                            85                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q22.33) MUTATED       85     55     65
  DEL PEAK 34(15Q22.33) WILD-TYPE    143     84    106
D61V10, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            85                             143
  CLUS_2                            55                              84
  CLUS_3                            65                             106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(15Q22.33) MUTATED       11      9     16     17     10      3
  DEL PEAK 34(15Q22.33) WILD-TYPE     13     11     12     11      8     14
D61V11, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            11                              13
  CLUS_2                             9                              11
  CLUS_3                            16                              12
  CLUS_4                            17                              11
  CLUS_5                            10                               8
  CLUS_6                             3                              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q22.33) MUTATED       23     11     15     17
  DEL PEAK 34(15Q22.33) WILD-TYPE     32      4     19     14
D61V12, multiclass
        clus
vv       DEL PEAK 34(15Q22.33) MUTATED DEL PEAK 34(15Q22.33) WILD-TYPE
  CLUS_1                            23                              32
  CLUS_2                            11                               4
  CLUS_3                            15                              19
  CLUS_4                            17                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 35(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16P13.3) MUTATED        6     11      7      1
  DEL PEAK 35(16P13.3) WILD-TYPE     37     51     62     40
D62V1, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                            6                             37
  CLUS_2                           11                             51
  CLUS_3                            7                             62
  CLUS_4                            1                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16P13.3) MUTATED        5      7      4      9
  DEL PEAK 35(16P13.3) WILD-TYPE     44     34     72     40
D62V2, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                            7                             34
  CLUS_3                            4                             72
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16P13.3) MUTATED       22     26     21
  DEL PEAK 35(16P13.3) WILD-TYPE    231    183    132
D62V3, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           22                            231
  CLUS_2                           26                            183
  CLUS_3                           21                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16P13.3) MUTATED       10     21     13
  DEL PEAK 35(16P13.3) WILD-TYPE     92    136    117
D62V4, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           10                             92
  CLUS_2                           21                            136
  CLUS_3                           13                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16P13.3) MUTATED       11     10      3      8      7     12
  DEL PEAK 35(16P13.3) WILD-TYPE     64     76     44     58    101     75
                                vv
clus                             CLUS_7
  DEL PEAK 35(16P13.3) MUTATED        2
  DEL PEAK 35(16P13.3) WILD-TYPE     10
D62V5, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                           10                             76
  CLUS_3                            3                             44
  CLUS_4                            8                             58
  CLUS_5                            7                            101
  CLUS_6                           12                             75
  CLUS_7                            2                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16P13.3) MUTATED       25     17     11
  DEL PEAK 35(16P13.3) WILD-TYPE    203    151     74
D62V6, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           25                            203
  CLUS_2                           17                            151
  CLUS_3                           11                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16P13.3) MUTATED       22     12     12     23
  DEL PEAK 35(16P13.3) WILD-TYPE    126    129    118    170
D62V7, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           22                            126
  CLUS_2                           12                            129
  CLUS_3                           12                            118
  CLUS_4                           23                            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16P13.3) MUTATED       11     13      3      2     12     20
  DEL PEAK 35(16P13.3) WILD-TYPE     69     73     61     55     78    118
                                vv
clus                             CLUS_7
  DEL PEAK 35(16P13.3) MUTATED        8
  DEL PEAK 35(16P13.3) WILD-TYPE     89
D62V8, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           11                             69
  CLUS_2                           13                             73
  CLUS_3                            3                             61
  CLUS_4                            2                             55
  CLUS_5                           12                             78
  CLUS_6                           20                            118
  CLUS_7                            8                             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16P13.3) MUTATED       19     11     26
  DEL PEAK 35(16P13.3) WILD-TYPE    192     84    206
D62V9, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           19                            192
  CLUS_2                           11                             84
  CLUS_3                           26                            206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16P13.3) MUTATED       24      9     23
  DEL PEAK 35(16P13.3) WILD-TYPE    204    130    148
D62V10, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           24                            204
  CLUS_2                            9                            130
  CLUS_3                           23                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16P13.3) MUTATED        1      3      2      4      0      0
  DEL PEAK 35(16P13.3) WILD-TYPE     23     17     26     24     18     17
D62V11, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                            1                             23
  CLUS_2                            3                             17
  CLUS_3                            2                             26
  CLUS_4                            4                             24
  CLUS_5                            0                             18
  CLUS_6                            0                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16P13.3) MUTATED        4      1      2      3
  DEL PEAK 35(16P13.3) WILD-TYPE     51     14     32     28
D62V12, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                            4                             51
  CLUS_2                            1                             14
  CLUS_3                            2                             32
  CLUS_4                            3                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 36(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q23.1) MUTATED       12      7      6      5
  DEL PEAK 36(16Q23.1) WILD-TYPE     31     55     63     36
D63V1, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           12                             31
  CLUS_2                            7                             55
  CLUS_3                            6                             63
  CLUS_4                            5                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q23.1) MUTATED       15      3      6      6
  DEL PEAK 36(16Q23.1) WILD-TYPE     34     38     70     43
D63V2, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           15                             34
  CLUS_2                            3                             38
  CLUS_3                            6                             70
  CLUS_4                            6                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       39     21     24
  DEL PEAK 36(16Q23.1) WILD-TYPE    214    188    129
D63V3, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           39                            214
  CLUS_2                           21                            188
  CLUS_3                           24                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       13     18     22
  DEL PEAK 36(16Q23.1) WILD-TYPE     89    139    108
D63V4, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           13                             89
  CLUS_2                           18                            139
  CLUS_3                           22                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16Q23.1) MUTATED       12      9      6      9     11     15
  DEL PEAK 36(16Q23.1) WILD-TYPE     63     77     41     57     97     72
                                vv
clus                             CLUS_7
  DEL PEAK 36(16Q23.1) MUTATED        1
  DEL PEAK 36(16Q23.1) WILD-TYPE     11
D63V5, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           12                             63
  CLUS_2                            9                             77
  CLUS_3                            6                             41
  CLUS_4                            9                             57
  CLUS_5                           11                             97
  CLUS_6                           15                             72
  CLUS_7                            1                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       30     23     10
  DEL PEAK 36(16Q23.1) WILD-TYPE    198    145     75
D63V6, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           30                            198
  CLUS_2                           23                            145
  CLUS_3                           10                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q23.1) MUTATED       19     24     14     27
  DEL PEAK 36(16Q23.1) WILD-TYPE    129    117    116    166
D63V7, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           19                            129
  CLUS_2                           24                            117
  CLUS_3                           14                            116
  CLUS_4                           27                            166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16Q23.1) MUTATED        8     12     10      8     14     14
  DEL PEAK 36(16Q23.1) WILD-TYPE     72     74     54     49     76    124
                                vv
clus                             CLUS_7
  DEL PEAK 36(16Q23.1) MUTATED       18
  DEL PEAK 36(16Q23.1) WILD-TYPE     79
D63V8, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                            8                             72
  CLUS_2                           12                             74
  CLUS_3                           10                             54
  CLUS_4                            8                             49
  CLUS_5                           14                             76
  CLUS_6                           14                            124
  CLUS_7                           18                             79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       29      9     29
  DEL PEAK 36(16Q23.1) WILD-TYPE    182     86    203
D63V9, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           29                            182
  CLUS_2                            9                             86
  CLUS_3                           29                            203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       32     12     23
  DEL PEAK 36(16Q23.1) WILD-TYPE    196    127    148
D63V10, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           32                            196
  CLUS_2                           12                            127
  CLUS_3                           23                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16Q23.1) MUTATED        4      4      3      5      2      2
  DEL PEAK 36(16Q23.1) WILD-TYPE     20     16     25     23     16     15
D63V11, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            4                             16
  CLUS_3                            3                             25
  CLUS_4                            5                             23
  CLUS_5                            2                             16
  CLUS_6                            2                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q23.1) MUTATED        8      1      8      3
  DEL PEAK 36(16Q23.1) WILD-TYPE     47     14     26     28
D63V12, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                            8                             47
  CLUS_2                            1                             14
  CLUS_3                            8                             26
  CLUS_4                            3                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 37(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17P12) MUTATED       16     50     52     15
  DEL PEAK 37(17P12) WILD-TYPE     27     12     17     26
D64V1, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         16                           27
  CLUS_2                         50                           12
  CLUS_3                         52                           17
  CLUS_4                         15                           26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17P12) MUTATED       14     32     49     38
  DEL PEAK 37(17P12) WILD-TYPE     35      9     27     11
D64V2, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         14                           35
  CLUS_2                         32                            9
  CLUS_3                         49                           27
  CLUS_4                         38                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P12) MUTATED       77    171    122
  DEL PEAK 37(17P12) WILD-TYPE    176     38     31
D64V3, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         77                          176
  CLUS_2                        171                           38
  CLUS_3                        122                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P12) MUTATED       45    128     61
  DEL PEAK 37(17P12) WILD-TYPE     57     29     69
D64V4, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         45                           57
  CLUS_2                        128                           29
  CLUS_3                         61                           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 37(17P12) MUTATED       47     48     30     41     63     48     10
  DEL PEAK 37(17P12) WILD-TYPE     28     38     17     25     45     39      2
D64V5, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         47                           28
  CLUS_2                         48                           38
  CLUS_3                         30                           17
  CLUS_4                         41                           25
  CLUS_5                         63                           45
  CLUS_6                         48                           39
  CLUS_7                         10                            2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P12) MUTATED      134     99     54
  DEL PEAK 37(17P12) WILD-TYPE     94     69     31
D64V6, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                        134                           94
  CLUS_2                         99                           69
  CLUS_3                         54                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17P12) MUTATED      116     57     72    123
  DEL PEAK 37(17P12) WILD-TYPE     32     84     58     70
D64V7, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                        116                           32
  CLUS_2                         57                           84
  CLUS_3                         72                           58
  CLUS_4                        123                           70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 37(17P12) MUTATED       58     49      8     39     68    106     40
  DEL PEAK 37(17P12) WILD-TYPE     22     37     56     18     22     32     57
D64V8, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         58                           22
  CLUS_2                         49                           37
  CLUS_3                          8                           56
  CLUS_4                         39                           18
  CLUS_5                         68                           22
  CLUS_6                        106                           32
  CLUS_7                         40                           57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P12) MUTATED      141     47    135
  DEL PEAK 37(17P12) WILD-TYPE     70     48     97
D64V9, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                        141                           70
  CLUS_2                         47                           48
  CLUS_3                        135                           97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P12) MUTATED      128     98     97
  DEL PEAK 37(17P12) WILD-TYPE    100     41     74
D64V10, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                        128                          100
  CLUS_2                         98                           41
  CLUS_3                         97                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(17P12) MUTATED       18     14     21     16     12      5
  DEL PEAK 37(17P12) WILD-TYPE      6      6      7     12      6     12
D64V11, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         18                            6
  CLUS_2                         14                            6
  CLUS_3                         21                            7
  CLUS_4                         16                           12
  CLUS_5                         12                            6
  CLUS_6                          5                           12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17P12) MUTATED       30     11     21     24
  DEL PEAK 37(17P12) WILD-TYPE     25      4     13      7
D64V12, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         30                           25
  CLUS_2                         11                            4
  CLUS_3                         21                           13
  CLUS_4                         24                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 38(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17Q24.3) MUTATED        6     10     12      6
  DEL PEAK 38(17Q24.3) WILD-TYPE     37     52     57     35
D65V1, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                            6                             37
  CLUS_2                           10                             52
  CLUS_3                           12                             57
  CLUS_4                            6                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17Q24.3) MUTATED        6      6     15      7
  DEL PEAK 38(17Q24.3) WILD-TYPE     43     35     61     42
D65V2, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                            6                             43
  CLUS_2                            6                             35
  CLUS_3                           15                             61
  CLUS_4                            7                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17Q24.3) MUTATED       26     44     25
  DEL PEAK 38(17Q24.3) WILD-TYPE    227    165    128
D65V3, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                           26                            227
  CLUS_2                           44                            165
  CLUS_3                           25                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17Q24.3) MUTATED       15     23     22
  DEL PEAK 38(17Q24.3) WILD-TYPE     87    134    108
D65V4, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                           15                             87
  CLUS_2                           23                            134
  CLUS_3                           22                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(17Q24.3) MUTATED       13     15      7      6     18      7
  DEL PEAK 38(17Q24.3) WILD-TYPE     62     71     40     60     90     80
                                vv
clus                             CLUS_7
  DEL PEAK 38(17Q24.3) MUTATED        3
  DEL PEAK 38(17Q24.3) WILD-TYPE      9
D65V5, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                           13                             62
  CLUS_2                           15                             71
  CLUS_3                            7                             40
  CLUS_4                            6                             60
  CLUS_5                           18                             90
  CLUS_6                            7                             80
  CLUS_7                            3                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17Q24.3) MUTATED       37     23      9
  DEL PEAK 38(17Q24.3) WILD-TYPE    191    145     76
D65V6, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                           37                            191
  CLUS_2                           23                            145
  CLUS_3                            9                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17Q24.3) MUTATED       24     19     21     31
  DEL PEAK 38(17Q24.3) WILD-TYPE    124    122    109    162
D65V7, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                           24                            124
  CLUS_2                           19                            122
  CLUS_3                           21                            109
  CLUS_4                           31                            162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(17Q24.3) MUTATED       16     10      4     13     17     20
  DEL PEAK 38(17Q24.3) WILD-TYPE     64     76     60     44     73    118
                                vv
clus                             CLUS_7
  DEL PEAK 38(17Q24.3) MUTATED       15
  DEL PEAK 38(17Q24.3) WILD-TYPE     82
D65V8, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                           16                             64
  CLUS_2                           10                             76
  CLUS_3                            4                             60
  CLUS_4                           13                             44
  CLUS_5                           17                             73
  CLUS_6                           20                            118
  CLUS_7                           15                             82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17Q24.3) MUTATED       35     16     32
  DEL PEAK 38(17Q24.3) WILD-TYPE    176     79    200
D65V9, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                           35                            176
  CLUS_2                           16                             79
  CLUS_3                           32                            200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17Q24.3) MUTATED       31     21     31
  DEL PEAK 38(17Q24.3) WILD-TYPE    197    118    140
D65V10, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                           31                            197
  CLUS_2                           21                            118
  CLUS_3                           31                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(17Q24.3) MUTATED        5      6      2      5      5      2
  DEL PEAK 38(17Q24.3) WILD-TYPE     19     14     26     23     13     15
D65V11, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            6                             14
  CLUS_3                            2                             26
  CLUS_4                            5                             23
  CLUS_5                            5                             13
  CLUS_6                            2                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17Q24.3) MUTATED       13      1      6      5
  DEL PEAK 38(17Q24.3) WILD-TYPE     42     14     28     26
D65V12, multiclass
        clus
vv       DEL PEAK 38(17Q24.3) MUTATED DEL PEAK 38(17Q24.3) WILD-TYPE
  CLUS_1                           13                             42
  CLUS_2                            1                             14
  CLUS_3                            6                             28
  CLUS_4                            5                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 39(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18P11.31) MUTATED       11     51     52     13
  DEL PEAK 39(18P11.31) WILD-TYPE     32     11     17     28
D66V1, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            11                              32
  CLUS_2                            51                              11
  CLUS_3                            52                              17
  CLUS_4                            13                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18P11.31) MUTATED        9     34     43     41
  DEL PEAK 39(18P11.31) WILD-TYPE     40      7     33      8
D66V2, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                             9                              40
  CLUS_2                            34                               7
  CLUS_3                            43                              33
  CLUS_4                            41                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18P11.31) MUTATED       72    189    109
  DEL PEAK 39(18P11.31) WILD-TYPE    181     20     44
D66V3, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            72                             181
  CLUS_2                           189                              20
  CLUS_3                           109                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18P11.31) MUTATED       50    141     50
  DEL PEAK 39(18P11.31) WILD-TYPE     52     16     80
D66V4, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            50                              52
  CLUS_2                           141                              16
  CLUS_3                            50                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(18P11.31) MUTATED       43     58     27     38     61     47
  DEL PEAK 39(18P11.31) WILD-TYPE     32     28     20     28     47     40
                                 vv
clus                              CLUS_7
  DEL PEAK 39(18P11.31) MUTATED        9
  DEL PEAK 39(18P11.31) WILD-TYPE      3
D66V5, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            43                              32
  CLUS_2                            58                              28
  CLUS_3                            27                              20
  CLUS_4                            38                              28
  CLUS_5                            61                              47
  CLUS_6                            47                              40
  CLUS_7                             9                               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18P11.31) MUTATED      130    102     51
  DEL PEAK 39(18P11.31) WILD-TYPE     98     66     34
D66V6, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                           130                              98
  CLUS_2                           102                              66
  CLUS_3                            51                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18P11.31) MUTATED      134     45     71    118
  DEL PEAK 39(18P11.31) WILD-TYPE     14     96     59     75
D66V7, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                           134                              14
  CLUS_2                            45                              96
  CLUS_3                            71                              59
  CLUS_4                           118                              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(18P11.31) MUTATED       66     46      6     40     70    106
  DEL PEAK 39(18P11.31) WILD-TYPE     14     40     58     17     20     32
                                 vv
clus                              CLUS_7
  DEL PEAK 39(18P11.31) MUTATED       34
  DEL PEAK 39(18P11.31) WILD-TYPE     63
D66V8, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            66                              14
  CLUS_2                            46                              40
  CLUS_3                             6                              58
  CLUS_4                            40                              17
  CLUS_5                            70                              20
  CLUS_6                           106                              32
  CLUS_7                            34                              63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18P11.31) MUTATED      143     47    129
  DEL PEAK 39(18P11.31) WILD-TYPE     68     48    103
D66V9, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                           143                              68
  CLUS_2                            47                              48
  CLUS_3                           129                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18P11.31) MUTATED      126     98     95
  DEL PEAK 39(18P11.31) WILD-TYPE    102     41     76
D66V10, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                           126                             102
  CLUS_2                            98                              41
  CLUS_3                            95                              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(18P11.31) MUTATED       21      9     24     21     13      4
  DEL PEAK 39(18P11.31) WILD-TYPE      3     11      4      7      5     13
D66V11, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            21                               3
  CLUS_2                             9                              11
  CLUS_3                            24                               4
  CLUS_4                            21                               7
  CLUS_5                            13                               5
  CLUS_6                             4                              13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18P11.31) MUTATED       28     13     23     28
  DEL PEAK 39(18P11.31) WILD-TYPE     27      2     11      3
D66V12, multiclass
        clus
vv       DEL PEAK 39(18P11.31) MUTATED DEL PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            28                              27
  CLUS_2                            13                               2
  CLUS_3                            23                              11
  CLUS_4                            28                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 40(18Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q12.2) MUTATED       17     54     56     17
  DEL PEAK 40(18Q12.2) WILD-TYPE     26      8     13     24
D67V1, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                           17                             26
  CLUS_2                           54                              8
  CLUS_3                           56                             13
  CLUS_4                           17                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q12.2) MUTATED       14     36     52     42
  DEL PEAK 40(18Q12.2) WILD-TYPE     35      5     24      7
D67V2, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                           14                             35
  CLUS_2                           36                              5
  CLUS_3                           52                             24
  CLUS_4                           42                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q12.2) MUTATED       83    196    137
  DEL PEAK 40(18Q12.2) WILD-TYPE    170     13     16
D67V3, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                           83                            170
  CLUS_2                          196                             13
  CLUS_3                          137                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q12.2) MUTATED       57    149     62
  DEL PEAK 40(18Q12.2) WILD-TYPE     45      8     68
D67V4, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                           57                             45
  CLUS_2                          149                              8
  CLUS_3                           62                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18Q12.2) MUTATED       50     60     34     40     66     56
  DEL PEAK 40(18Q12.2) WILD-TYPE     25     26     13     26     42     31
                                vv
clus                             CLUS_7
  DEL PEAK 40(18Q12.2) MUTATED       11
  DEL PEAK 40(18Q12.2) WILD-TYPE      1
D67V5, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                           50                             25
  CLUS_2                           60                             26
  CLUS_3                           34                             13
  CLUS_4                           40                             26
  CLUS_5                           66                             42
  CLUS_6                           56                             31
  CLUS_7                           11                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q12.2) MUTATED      146    108     63
  DEL PEAK 40(18Q12.2) WILD-TYPE     82     60     22
D67V6, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                          146                             82
  CLUS_2                          108                             60
  CLUS_3                           63                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q12.2) MUTATED      135     61     83    135
  DEL PEAK 40(18Q12.2) WILD-TYPE     13     80     47     58
D67V7, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                          135                             13
  CLUS_2                           61                             80
  CLUS_3                           83                             47
  CLUS_4                          135                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18Q12.2) MUTATED       67     58      8     45     77    114
  DEL PEAK 40(18Q12.2) WILD-TYPE     13     28     56     12     13     24
                                vv
clus                             CLUS_7
  DEL PEAK 40(18Q12.2) MUTATED       45
  DEL PEAK 40(18Q12.2) WILD-TYPE     52
D67V8, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                           67                             13
  CLUS_2                           58                             28
  CLUS_3                            8                             56
  CLUS_4                           45                             12
  CLUS_5                           77                             13
  CLUS_6                          114                             24
  CLUS_7                           45                             52
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q12.2) MUTATED      161     53    148
  DEL PEAK 40(18Q12.2) WILD-TYPE     50     42     84
D67V9, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                          161                             50
  CLUS_2                           53                             42
  CLUS_3                          148                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q12.2) MUTATED      147    108    107
  DEL PEAK 40(18Q12.2) WILD-TYPE     81     31     64
D67V10, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                          147                             81
  CLUS_2                          108                             31
  CLUS_3                          107                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18Q12.2) MUTATED       22     13     27     23     14      5
  DEL PEAK 40(18Q12.2) WILD-TYPE      2      7      1      5      4     12
D67V11, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                           22                              2
  CLUS_2                           13                              7
  CLUS_3                           27                              1
  CLUS_4                           23                              5
  CLUS_5                           14                              4
  CLUS_6                            5                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q12.2) MUTATED       33     15     26     30
  DEL PEAK 40(18Q12.2) WILD-TYPE     22      0      8      1
D67V12, multiclass
        clus
vv       DEL PEAK 40(18Q12.2) MUTATED DEL PEAK 40(18Q12.2) WILD-TYPE
  CLUS_1                           33                             22
  CLUS_2                           15                              0
  CLUS_3                           26                              8
  CLUS_4                           30                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 41(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q21.2) MUTATED       17     55     57     18
  DEL PEAK 41(18Q21.2) WILD-TYPE     26      7     12     23
D68V1, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           17                             26
  CLUS_2                           55                              7
  CLUS_3                           57                             12
  CLUS_4                           18                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q21.2) MUTATED       14     36     55     42
  DEL PEAK 41(18Q21.2) WILD-TYPE     35      5     21      7
D68V2, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           14                             35
  CLUS_2                           36                              5
  CLUS_3                           55                             21
  CLUS_4                           42                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q21.2) MUTATED       91    199    142
  DEL PEAK 41(18Q21.2) WILD-TYPE    162     10     11
D68V3, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           91                            162
  CLUS_2                          199                             10
  CLUS_3                          142                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q21.2) MUTATED       57    151     73
  DEL PEAK 41(18Q21.2) WILD-TYPE     45      6     57
D68V4, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           57                             45
  CLUS_2                          151                              6
  CLUS_3                           73                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q21.2) MUTATED       54     61     35     45     68     59
  DEL PEAK 41(18Q21.2) WILD-TYPE     21     25     12     21     40     28
                                vv
clus                             CLUS_7
  DEL PEAK 41(18Q21.2) MUTATED       11
  DEL PEAK 41(18Q21.2) WILD-TYPE      1
D68V5, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           54                             21
  CLUS_2                           61                             25
  CLUS_3                           35                             12
  CLUS_4                           45                             21
  CLUS_5                           68                             40
  CLUS_6                           59                             28
  CLUS_7                           11                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q21.2) MUTATED      154    114     65
  DEL PEAK 41(18Q21.2) WILD-TYPE     74     54     20
D68V6, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                          154                             74
  CLUS_2                          114                             54
  CLUS_3                           65                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q21.2) MUTATED      136     69     88    137
  DEL PEAK 41(18Q21.2) WILD-TYPE     12     72     42     56
D68V7, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                          136                             12
  CLUS_2                           69                             72
  CLUS_3                           88                             42
  CLUS_4                          137                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q21.2) MUTATED       68     62     13     45     80    116
  DEL PEAK 41(18Q21.2) WILD-TYPE     12     24     51     12     10     22
                                vv
clus                             CLUS_7
  DEL PEAK 41(18Q21.2) MUTATED       46
  DEL PEAK 41(18Q21.2) WILD-TYPE     51
D68V8, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           68                             12
  CLUS_2                           62                             24
  CLUS_3                           13                             51
  CLUS_4                           45                             12
  CLUS_5                           80                             10
  CLUS_6                          116                             22
  CLUS_7                           46                             51
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q21.2) MUTATED      170     55    153
  DEL PEAK 41(18Q21.2) WILD-TYPE     41     40     79
D68V9, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                          170                             41
  CLUS_2                           55                             40
  CLUS_3                          153                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q21.2) MUTATED      158    109    111
  DEL PEAK 41(18Q21.2) WILD-TYPE     70     30     60
D68V10, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                          158                             70
  CLUS_2                          109                             30
  CLUS_3                          111                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q21.2) MUTATED       24     14     27     23     14      6
  DEL PEAK 41(18Q21.2) WILD-TYPE      0      6      1      5      4     11
D68V11, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           24                              0
  CLUS_2                           14                              6
  CLUS_3                           27                              1
  CLUS_4                           23                              5
  CLUS_5                           14                              4
  CLUS_6                            6                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q21.2) MUTATED       34     15     29     30
  DEL PEAK 41(18Q21.2) WILD-TYPE     21      0      5      1
D68V12, multiclass
        clus
vv       DEL PEAK 41(18Q21.2) MUTATED DEL PEAK 41(18Q21.2) WILD-TYPE
  CLUS_1                           34                             21
  CLUS_2                           15                              0
  CLUS_3                           29                              5
  CLUS_4                           30                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 42(18Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q22.1) MUTATED       17     55     56     19
  DEL PEAK 42(18Q22.1) WILD-TYPE     26      7     13     22
D69V1, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                           17                             26
  CLUS_2                           55                              7
  CLUS_3                           56                             13
  CLUS_4                           19                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q22.1) MUTATED       15     36     54     42
  DEL PEAK 42(18Q22.1) WILD-TYPE     34      5     22      7
D69V2, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                           15                             34
  CLUS_2                           36                              5
  CLUS_3                           54                             22
  CLUS_4                           42                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q22.1) MUTATED       87    199    141
  DEL PEAK 42(18Q22.1) WILD-TYPE    166     10     12
D69V3, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                           87                            166
  CLUS_2                          199                             10
  CLUS_3                          141                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q22.1) MUTATED       55    151     70
  DEL PEAK 42(18Q22.1) WILD-TYPE     47      6     60
D69V4, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                           55                             47
  CLUS_2                          151                              6
  CLUS_3                           70                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q22.1) MUTATED       52     62     34     46     67     57
  DEL PEAK 42(18Q22.1) WILD-TYPE     23     24     13     20     41     30
                                vv
clus                             CLUS_7
  DEL PEAK 42(18Q22.1) MUTATED       11
  DEL PEAK 42(18Q22.1) WILD-TYPE      1
D69V5, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                           52                             23
  CLUS_2                           62                             24
  CLUS_3                           34                             13
  CLUS_4                           46                             20
  CLUS_5                           67                             41
  CLUS_6                           57                             30
  CLUS_7                           11                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q22.1) MUTATED      150    115     64
  DEL PEAK 42(18Q22.1) WILD-TYPE     78     53     21
D69V6, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                          150                             78
  CLUS_2                          115                             53
  CLUS_3                           64                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q22.1) MUTATED      135     69     85    136
  DEL PEAK 42(18Q22.1) WILD-TYPE     13     72     45     57
D69V7, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                          135                             13
  CLUS_2                           69                             72
  CLUS_3                           85                             45
  CLUS_4                          136                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q22.1) MUTATED       67     61     13     43     79    115
  DEL PEAK 42(18Q22.1) WILD-TYPE     13     25     51     14     11     23
                                vv
clus                             CLUS_7
  DEL PEAK 42(18Q22.1) MUTATED       47
  DEL PEAK 42(18Q22.1) WILD-TYPE     50
D69V8, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                           67                             13
  CLUS_2                           61                             25
  CLUS_3                           13                             51
  CLUS_4                           43                             14
  CLUS_5                           79                             11
  CLUS_6                          115                             23
  CLUS_7                           47                             50
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q22.1) MUTATED      167     53    153
  DEL PEAK 42(18Q22.1) WILD-TYPE     44     42     79
D69V9, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                          167                             44
  CLUS_2                           53                             42
  CLUS_3                          153                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q22.1) MUTATED      156    106    111
  DEL PEAK 42(18Q22.1) WILD-TYPE     72     33     60
D69V10, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                          156                             72
  CLUS_2                          106                             33
  CLUS_3                          111                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q22.1) MUTATED       24     14     26     22     14      6
  DEL PEAK 42(18Q22.1) WILD-TYPE      0      6      2      6      4     11
D69V11, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                           24                              0
  CLUS_2                           14                              6
  CLUS_3                           26                              2
  CLUS_4                           22                              6
  CLUS_5                           14                              4
  CLUS_6                            6                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q22.1) MUTATED       34     15     29     28
  DEL PEAK 42(18Q22.1) WILD-TYPE     21      0      5      3
D69V12, multiclass
        clus
vv       DEL PEAK 42(18Q22.1) MUTATED DEL PEAK 42(18Q22.1) WILD-TYPE
  CLUS_1                           34                             21
  CLUS_2                           15                              0
  CLUS_3                           29                              5
  CLUS_4                           28                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 43(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19P13.3) MUTATED        8     17     10      4
  DEL PEAK 43(19P13.3) WILD-TYPE     35     45     59     37
D70V1, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                           17                             45
  CLUS_3                           10                             59
  CLUS_4                            4                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19P13.3) MUTATED        6      8     13     12
  DEL PEAK 43(19P13.3) WILD-TYPE     43     33     63     37
D70V2, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                            6                             43
  CLUS_2                            8                             33
  CLUS_3                           13                             63
  CLUS_4                           12                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       19     42     36
  DEL PEAK 43(19P13.3) WILD-TYPE    234    167    117
D70V3, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           19                            234
  CLUS_2                           42                            167
  CLUS_3                           36                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       13     24     19
  DEL PEAK 43(19P13.3) WILD-TYPE     89    133    111
D70V4, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           13                             89
  CLUS_2                           24                            133
  CLUS_3                           19                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(19P13.3) MUTATED       12      9      5      9     18     12
  DEL PEAK 43(19P13.3) WILD-TYPE     63     77     42     57     90     75
                                vv
clus                             CLUS_7
  DEL PEAK 43(19P13.3) MUTATED        2
  DEL PEAK 43(19P13.3) WILD-TYPE     10
D70V5, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           12                             63
  CLUS_2                            9                             77
  CLUS_3                            5                             42
  CLUS_4                            9                             57
  CLUS_5                           18                             90
  CLUS_6                           12                             75
  CLUS_7                            2                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       34     22     11
  DEL PEAK 43(19P13.3) WILD-TYPE    194    146     74
D70V6, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           34                            194
  CLUS_2                           22                            146
  CLUS_3                           11                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19P13.3) MUTATED       25     14     24     33
  DEL PEAK 43(19P13.3) WILD-TYPE    123    127    106    160
D70V7, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           25                            123
  CLUS_2                           14                            127
  CLUS_3                           24                            106
  CLUS_4                           33                            160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(19P13.3) MUTATED       16     12      3      8     17     26
  DEL PEAK 43(19P13.3) WILD-TYPE     64     74     61     49     73    112
                                vv
clus                             CLUS_7
  DEL PEAK 43(19P13.3) MUTATED       14
  DEL PEAK 43(19P13.3) WILD-TYPE     83
D70V8, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           16                             64
  CLUS_2                           12                             74
  CLUS_3                            3                             61
  CLUS_4                            8                             49
  CLUS_5                           17                             73
  CLUS_6                           26                            112
  CLUS_7                           14                             83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       38     13     37
  DEL PEAK 43(19P13.3) WILD-TYPE    173     82    195
D70V9, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           38                            173
  CLUS_2                           13                             82
  CLUS_3                           37                            195
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       28     35     25
  DEL PEAK 43(19P13.3) WILD-TYPE    200    104    146
D70V10, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           28                            200
  CLUS_2                           35                            104
  CLUS_3                           25                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(19P13.3) MUTATED        9      3     10      2      3      2
  DEL PEAK 43(19P13.3) WILD-TYPE     15     17     18     26     15     15
D70V11, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                            3                             17
  CLUS_3                           10                             18
  CLUS_4                            2                             26
  CLUS_5                            3                             15
  CLUS_6                            2                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19P13.3) MUTATED        7      4      9      9
  DEL PEAK 43(19P13.3) WILD-TYPE     48     11     25     22
D70V12, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                            7                             48
  CLUS_2                            4                             11
  CLUS_3                            9                             25
  CLUS_4                            9                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 44(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20P12.1) MUTATED        5     20     12      7
  DEL PEAK 44(20P12.1) WILD-TYPE     38     42     57     34
D71V1, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                            5                             38
  CLUS_2                           20                             42
  CLUS_3                           12                             57
  CLUS_4                            7                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20P12.1) MUTATED        4     16     10     14
  DEL PEAK 44(20P12.1) WILD-TYPE     45     25     66     35
D71V2, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                            4                             45
  CLUS_2                           16                             25
  CLUS_3                           10                             66
  CLUS_4                           14                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20P12.1) MUTATED       30     57     48
  DEL PEAK 44(20P12.1) WILD-TYPE    223    152    105
D71V3, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           30                            223
  CLUS_2                           57                            152
  CLUS_3                           48                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20P12.1) MUTATED       18     57     16
  DEL PEAK 44(20P12.1) WILD-TYPE     84    100    114
D71V4, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           18                             84
  CLUS_2                           57                            100
  CLUS_3                           16                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(20P12.1) MUTATED       15     18      8     23     26     15
  DEL PEAK 44(20P12.1) WILD-TYPE     60     68     39     43     82     72
                                vv
clus                             CLUS_7
  DEL PEAK 44(20P12.1) MUTATED        5
  DEL PEAK 44(20P12.1) WILD-TYPE      7
D71V5, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           15                             60
  CLUS_2                           18                             68
  CLUS_3                            8                             39
  CLUS_4                           23                             43
  CLUS_5                           26                             82
  CLUS_6                           15                             72
  CLUS_7                            5                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20P12.1) MUTATED       50     41     19
  DEL PEAK 44(20P12.1) WILD-TYPE    178    127     66
D71V6, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           50                            178
  CLUS_2                           41                            127
  CLUS_3                           19                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20P12.1) MUTATED       53     20     27     34
  DEL PEAK 44(20P12.1) WILD-TYPE     95    121    103    159
D71V7, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           53                             95
  CLUS_2                           20                            121
  CLUS_3                           27                            103
  CLUS_4                           34                            159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(20P12.1) MUTATED       25     20      0     14     29     36
  DEL PEAK 44(20P12.1) WILD-TYPE     55     66     64     43     61    102
                                vv
clus                             CLUS_7
  DEL PEAK 44(20P12.1) MUTATED       10
  DEL PEAK 44(20P12.1) WILD-TYPE     87
D71V8, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           25                             55
  CLUS_2                           20                             66
  CLUS_3                            0                             64
  CLUS_4                           14                             43
  CLUS_5                           29                             61
  CLUS_6                           36                            102
  CLUS_7                           10                             87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20P12.1) MUTATED       57     15     42
  DEL PEAK 44(20P12.1) WILD-TYPE    154     80    190
D71V9, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           57                            154
  CLUS_2                           15                             80
  CLUS_3                           42                            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20P12.1) MUTATED       46     41     27
  DEL PEAK 44(20P12.1) WILD-TYPE    182     98    144
D71V10, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           46                            182
  CLUS_2                           41                             98
  CLUS_3                           27                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(20P12.1) MUTATED        7      3      7      8      4      3
  DEL PEAK 44(20P12.1) WILD-TYPE     17     17     21     20     14     14
D71V11, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            3                             17
  CLUS_3                            7                             21
  CLUS_4                            8                             20
  CLUS_5                            4                             14
  CLUS_6                            3                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20P12.1) MUTATED        9      6     11      6
  DEL PEAK 44(20P12.1) WILD-TYPE     46      9     23     25
D71V12, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                            9                             46
  CLUS_2                            6                              9
  CLUS_3                           11                             23
  CLUS_4                            6                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 45(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED       11     29     25      8
  DEL PEAK 45(21Q11.2) WILD-TYPE     32     33     44     33
D72V1, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           11                             32
  CLUS_2                           29                             33
  CLUS_3                           25                             44
  CLUS_4                            8                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED       11     23     19     20
  DEL PEAK 45(21Q11.2) WILD-TYPE     38     18     57     29
D72V2, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           11                             38
  CLUS_2                           23                             18
  CLUS_3                           19                             57
  CLUS_4                           20                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       59    105     50
  DEL PEAK 45(21Q11.2) WILD-TYPE    194    104    103
D72V3, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           59                            194
  CLUS_2                          105                            104
  CLUS_3                           50                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       29     73     37
  DEL PEAK 45(21Q11.2) WILD-TYPE     73     84     93
D72V4, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           29                             73
  CLUS_2                           73                             84
  CLUS_3                           37                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(21Q11.2) MUTATED       31     25     15     29     34     30
  DEL PEAK 45(21Q11.2) WILD-TYPE     44     61     32     37     74     57
                                vv
clus                             CLUS_7
  DEL PEAK 45(21Q11.2) MUTATED        5
  DEL PEAK 45(21Q11.2) WILD-TYPE      7
D72V5, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           31                             44
  CLUS_2                           25                             61
  CLUS_3                           15                             32
  CLUS_4                           29                             37
  CLUS_5                           34                             74
  CLUS_6                           30                             57
  CLUS_7                            5                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       74     63     32
  DEL PEAK 45(21Q11.2) WILD-TYPE    154    105     53
D72V6, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           74                            154
  CLUS_2                           63                            105
  CLUS_3                           32                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED       75     33     40     64
  DEL PEAK 45(21Q11.2) WILD-TYPE     73    108     90    129
D72V7, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           75                             73
  CLUS_2                           33                            108
  CLUS_3                           40                             90
  CLUS_4                           64                            129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(21Q11.2) MUTATED       35     27      9     23     38     55
  DEL PEAK 45(21Q11.2) WILD-TYPE     45     59     55     34     52     83
                                vv
clus                             CLUS_7
  DEL PEAK 45(21Q11.2) MUTATED       25
  DEL PEAK 45(21Q11.2) WILD-TYPE     72
D72V8, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           35                             45
  CLUS_2                           27                             59
  CLUS_3                            9                             55
  CLUS_4                           23                             34
  CLUS_5                           38                             52
  CLUS_6                           55                             83
  CLUS_7                           25                             72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       86     25     77
  DEL PEAK 45(21Q11.2) WILD-TYPE    125     70    155
D72V9, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           86                            125
  CLUS_2                           25                             70
  CLUS_3                           77                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       75     56     57
  DEL PEAK 45(21Q11.2) WILD-TYPE    153     83    114
D72V10, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           75                            153
  CLUS_2                           56                             83
  CLUS_3                           57                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(21Q11.2) MUTATED       13      8     11     14      8      5
  DEL PEAK 45(21Q11.2) WILD-TYPE     11     12     17     14     10     12
D72V11, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                            8                             12
  CLUS_3                           11                             17
  CLUS_4                           14                             14
  CLUS_5                            8                             10
  CLUS_6                            5                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED       20      7     19     13
  DEL PEAK 45(21Q11.2) WILD-TYPE     35      8     15     18
D72V12, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           20                             35
  CLUS_2                            7                              8
  CLUS_3                           19                             15
  CLUS_4                           13                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 46(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED       13     31     34      8
  DEL PEAK 46(22Q13.32) WILD-TYPE     30     31     35     33
D73V1, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            13                              30
  CLUS_2                            31                              31
  CLUS_3                            34                              35
  CLUS_4                             8                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED        7     19     33     27
  DEL PEAK 46(22Q13.32) WILD-TYPE     42     22     43     22
D73V2, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                             7                              42
  CLUS_2                            19                              22
  CLUS_3                            33                              43
  CLUS_4                            27                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       53    117     59
  DEL PEAK 46(22Q13.32) WILD-TYPE    200     92     94
D73V3, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            53                             200
  CLUS_2                           117                              92
  CLUS_3                            59                              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       39     64     37
  DEL PEAK 46(22Q13.32) WILD-TYPE     63     93     93
D73V4, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            39                              63
  CLUS_2                            64                              93
  CLUS_3                            37                              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(22Q13.32) MUTATED       27     29     22     29     28     31
  DEL PEAK 46(22Q13.32) WILD-TYPE     48     57     25     37     80     56
                                 vv
clus                              CLUS_7
  DEL PEAK 46(22Q13.32) MUTATED        7
  DEL PEAK 46(22Q13.32) WILD-TYPE      5
D73V5, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            27                              48
  CLUS_2                            29                              57
  CLUS_3                            22                              25
  CLUS_4                            29                              37
  CLUS_5                            28                              80
  CLUS_6                            31                              56
  CLUS_7                             7                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       73     66     34
  DEL PEAK 46(22Q13.32) WILD-TYPE    155    102     51
D73V6, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            73                             155
  CLUS_2                            66                             102
  CLUS_3                            34                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED       66     37     44     81
  DEL PEAK 46(22Q13.32) WILD-TYPE     82    104     86    112
D73V7, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            66                              82
  CLUS_2                            37                             104
  CLUS_3                            44                              86
  CLUS_4                            81                             112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(22Q13.32) MUTATED       34     30      8     24     38     67
  DEL PEAK 46(22Q13.32) WILD-TYPE     46     56     56     33     52     71
                                 vv
clus                              CLUS_7
  DEL PEAK 46(22Q13.32) MUTATED       27
  DEL PEAK 46(22Q13.32) WILD-TYPE     70
D73V8, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            34                              46
  CLUS_2                            30                              56
  CLUS_3                             8                              56
  CLUS_4                            24                              33
  CLUS_5                            38                              52
  CLUS_6                            67                              71
  CLUS_7                            27                              70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       81     34     85
  DEL PEAK 46(22Q13.32) WILD-TYPE    130     61    147
D73V9, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            81                             130
  CLUS_2                            34                              61
  CLUS_3                            85                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       76     57     67
  DEL PEAK 46(22Q13.32) WILD-TYPE    152     82    104
D73V10, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            76                             152
  CLUS_2                            57                              82
  CLUS_3                            67                             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(22Q13.32) MUTATED       10     11     11     17      8      5
  DEL PEAK 46(22Q13.32) WILD-TYPE     14      9     17     11     10     12
D73V11, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            10                              14
  CLUS_2                            11                               9
  CLUS_3                            11                              17
  CLUS_4                            17                              11
  CLUS_5                             8                              10
  CLUS_6                             5                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED       23      5     17     17
  DEL PEAK 46(22Q13.32) WILD-TYPE     32     10     17     14
D73V12, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            23                              32
  CLUS_2                             5                              10
  CLUS_3                            17                              17
  CLUS_4                            17                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
