# Mutations from non-coordinated clusters only with >4 mutations
"Sample"	"A_T_coord_clusters"	"G_C_coord_clusters"	"Non_coord_clusters"	"clusters"	"mutations"	"complex"	"insertions"	"deletions"	"indels"	"substitutions"	"bases"	"A_to_T"	"A_to_G"	"A_to_C"	"A"	"a"	"T_to_A"	"T_to_C"	"T_to_G"	"T"	"t"	"G_to_C"	"G_to_T"	"G_to_A"	"G"	"g"	"C_to_G"	"C_to_A"	"C_to_T"	"C"	"c"	"tCw_to_G"	"tCw_to_A"	"tCw_to_T"	"tCw"	"tcw"	"tCw_per_mut"	"tCw_per_C"	"tcw_per_c"	"enrich_tCw"	"freq_tCw"	"wGa_to_C"	"wGa_to_T"	"wGa_to_A"	"wGa"	"wga"	"wGa_per_mut"	"wGa_per_G"	"wga_per_g"	"enrich_wGa"	"freq_wGa"	"[tCw_to_G+tCw_to_T]_per_mut"	"tCw_to_G+tCw_to_T"	"[(C_to_G)+(C_to_T)]-[(tCw_to_G)+(tCw_to_T)]"	"tcw+wga"	"c-tcw"	"Fisher_p-value_tCw"	"BH_Fisher_p-value_tCw"	"bonferroni_Fisher_p-value_tCw"	"odds_ratio_tCw"	"95%_confidence_lower_tCw"	"95%_confidence_upper_tCw"	"APOBEC_enrich"	"tCw_to_G_enrich"	"Fisher_p-value_tCw_to_G"	"BH_Fisher_p-value_tCw_to_G"	"bonferroni_Fisher_p-value_tCw_to_G"	"odds_ratio_tCw_to_G"	"tCw_to_T_enrich"	"Fisher_p-value_tCw_to_T"	"BH_Fisher_p-value_tCw_to_T"	"bonferroni_Fisher_p-value_tCw_to_T"	"odds_ratio_tCw_to_T"	"p-value_GvT_skew"	"BH_p-value_GvT_skew"	"bonferroni_p-value_GvT_skew"	"non-APOBEC_mutations"	"non-APOBEC_substitutions"	"APOBEC_MutLoad_MinEstimate"
"TCGA-FA-8693-01A-11D-2397-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FA-A4BB-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FA-A4XK-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FA-A6HN-01A-11D-A31X-10"	0	0	1	1	6	0	0	1	1	5	205	0	0	0	0	26	0	0	0	0	68	0	0	3	3	61	0	1	1	2	50	0	0	0	0	5	0	0	0.1	0	0	0	0	0	0	4	0	0	0.0655737704918033	0	0	0	0	4	9	102	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	6	5	0
"TCGA-FA-A6HO-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FA-A7DS-01A-11D-A382-10"	0	0	1	1	9	1	0	0	0	8	328	0	0	0	0	65	0	0	0	0	65	0	0	3	3	94	0	0	5	5	104	0	0	1	1	10	0.111111111111111	0.2	0.0961538461538462	2.08	0.1	0	0	1	1	10	0.111111111111111	0.333333333333333	0.106382978723404	3.13333333333333	0.1	0.222222222222222	2	6	20	178	0.205376629831308	1	1	2.94398039845696	0.405125565513036	Inf	2.475	NA	1	1	1	0	2.475	0.205376629831308	1	1	2.94398039845696	0.333333333333333	1	1	7	6	0
"TCGA-FA-A7Q1-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FA-A82F-01A-11D-A382-10"	0	0	1	1	5	0	0	0	0	5	205	0	0	0	0	37	0	0	0	0	37	1	1	1	3	76	1	0	1	2	55	0	0	0	0	4	0	0	0.0727272727272727	0	0	0	0	0	0	10	0	0	0.131578947368421	0	0	0	0	4	14	117	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	5	5	0
"TCGA-FA-A86F-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-8041-01A-11D-2210-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-8042-01A-11D-2210-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-8043-01A-11D-2210-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-8046-01A-11D-2210-10"	0	0	1	1	7	0	0	0	0	7	287	0	2	0	2	73	0	0	0	0	43	2	0	1	3	62	1	0	1	2	109	0	0	0	0	8	0	0	0.073394495412844	0	0	0	0	0	0	6	0	0	0.0967741935483871	0	0	0	0	5	14	157	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	7	7	0
"TCGA-FF-8047-01A-11D-2210-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-8061-01A-11D-2210-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-8062-01A-11D-2210-10"	0	0	1	1	6	2	0	0	0	4	164	0	0	0	0	44	0	0	0	0	37	0	0	2	2	52	2	0	0	2	31	0	0	0	0	8	0	0	0.258064516129032	0	0	0	0	0	0	5	0	0	0.0961538461538462	0	0	0	0	4	13	70	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	6	4	0
"TCGA-FF-A7CQ-01A-11D-A382-10"	0	0	1	1	8	1	0	0	0	7	287	0	0	0	0	51	0	0	0	0	50	0	0	4	4	81	0	0	3	3	105	0	0	0	0	8	0	0	0.0761904761904762	0	0	0	0	0	0	1	0	0	0.0123456790123457	0	0	0	0	7	9	177	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	8	7	0
"TCGA-FF-A7CR-01A-11D-A382-10"	0	0	2	2	15	3	0	0	0	12	492	1	0	0	1	84	1	0	0	1	101	0	1	1	2	146	1	1	6	8	161	0	0	1	1	12	0.0666666666666667	0.125	0.0745341614906832	1.67708333333333	0.0833333333333333	0	0	0	0	8	0	0	0.0547945205479452	0	0	0.0666666666666667	1	7	20	287	0.427875423269873	1	1	2.04373608986482	0.0880074847390039	Inf	1.91875	0	1	1	1	0	2.19285714285714	0.387009382074864	1	1	2.38216856905158	1	1	1	14	11	0
"TCGA-FF-A7CW-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FF-A7CX-01A-12D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-FM-8000-01A-11D-2210-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-G8-6324-01A-11D-2210-10"	0	0	34	34	392	54	0	2	2	336	13776	7	64	15	86	3120	7	54	15	76	3272	15	14	57	86	3600	20	13	55	88	3784	6	2	3	11	508	0.0280612244897959	0.125	0.134249471458774	0.931102362204724	0.0216535433070866	2	0	5	7	504	0.0178571428571429	0.0813953488372093	0.14	0.581395348837209	0.0138888888888889	0.0408163265306122	16	131	1012	6372	0.867839225298057	1	1	0.769056116949109	0.468328016944273	Inf	0.794170632679949	1.66775832862789	0.0980737767867577	1	1	1.86537364349758	0.521174477696217	0.989564188621772	1	1	0.484379430751288	1	1	1	376	320	0
"TCGA-GR-7353-01A-11D-2210-10"	0	0	17	17	205	13	0	5	5	187	7667	4	34	10	48	1767	1	25	7	33	1829	9	10	41	60	1935	12	7	27	46	2136	5	0	3	8	288	0.0390243902439024	0.173913043478261	0.134831460674157	1.28985507246377	0.0277777777777778	3	0	4	7	294	0.0341463414634146	0.116666666666667	0.151937984496124	0.767857142857143	0.0238095238095238	0.0731707317073171	15	74	582	3489	0.290181716679404	1	1	1.21509327178065	0.712718795555352	Inf	1.17890652148732	2.6647029945999	0.00639898151633276	0.262358242169643	0.262358242169643	3.68746609176572	0.720057610673135	0.869858674545138	1	1	0.687988669100924	1	1	1	190	172	0
"TCGA-GR-A4D4-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GR-A4D5-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GR-A4D6-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GR-A4D9-01B-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TQ-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TT-01A-11D-A382-10"	0	0	2	2	14	4	0	0	0	10	410	0	0	0	0	68	0	0	0	0	80	2	2	2	6	146	1	0	3	4	116	1	0	0	1	9	0.0714285714285714	0.25	0.0775862068965517	3.22222222222222	0.111111111111111	0	0	0	0	9	0	0	0.0616438356164384	0	0	0.0714285714285714	1	7	18	244	0.446645503077811	1	1	1.93036800663454	0.0827079273561456	Inf	1.81944444444444	4.85185185185185	0.200744803657495	1	1	6.67540260858444	0	1	1	1	0	1	1	1	13	9	0
"TCGA-GS-A9TU-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TV-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TW-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TX-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TY-01A-11D-A38X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9TZ-01A-11D-A38X-10"	0	0	2	2	11	2	0	1	1	8	328	1	0	0	1	69	0	1	0	1	70	0	1	1	2	95	2	0	2	4	94	0	0	0	0	13	0	0	0.138297872340426	0	0	0	0	0	0	5	0	0	0.0526315789473684	0	0	0	0	5	18	171	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	11	8	0
"TCGA-GS-A9U3-01A-11D-A38X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-GS-A9U4-01A-11D-A38X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-RQ-A68N-01A-11D-A31X-10"	0	0	1	1	5	3	0	0	0	2	82	0	0	0	0	19	1	0	0	1	10	0	0	1	1	28	0	0	0	0	25	0	0	0	0	2	0	NA	0.08	NA	0	0	0	0	0	1	0	0	0.0357142857142857	0	0	0	0	1	3	50	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	5	2	0
"TCGA-RQ-A6JB-01A-11D-A31X-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"TCGA-RQ-AAAT-01A-11D-A38X-10"	0	0	1	1	5	0	0	0	0	5	205	0	0	0	0	45	0	0	0	0	26	3	0	0	3	60	0	1	1	2	74	0	0	0	0	5	0	0	0.0675675675675676	0	0	0	0	0	0	3	0	0	0.05	0	0	0	0	4	8	126	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	5	5	0
"TCGA-VB-A8QN-01A-11D-A382-10"	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	0	0	0	0	1	1	1	0	0	Inf	NA	NA	1	1	1	0	NA	1	1	1	0	1	1	1	0	0	0
"Totals"	0	0	65	65	688	83	0	9	9	596	24436	13	100	25	138	5468	10	80	22	112	5688	32	29	117	178	6436	40	23	105	168	6844	12	2	8	22	880	0.0319767441860465	0.130952380952381	0.128579777907656	1.01845238095238	0.025	5	0	10	15	860	0.0218023255813953	0.0842696629213483	0.133623368551896	0.630650640188137	0.0174418604651163	0.0508720930232558	35	259	1740	11540	0.751428052749902	NA	NA	0.896221417168446	0.647998998166515	Inf	0.908593322386426	1.80204342273308	0.0108002748555259	NA	NA	2.04983775092926	0.618825722273998	0.992267824338761	NA	NA	0.585212945652118	1	NA	NA	653	561	NA
