[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  RPPA_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                            Clinical feature             
DAYS_TO_DEATH_OR_LAST_FUP   "DAYS_TO_DEATH_OR_LAST_FUP"  
YEARS_TO_BIRTH              "YEARS_TO_BIRTH"             
GENDER                      "GENDER"                     
RADIATION_THERAPY           "RADIATION_THERAPY"          
KARNOFSKY_PERFORMANCE_SCORE "KARNOFSKY_PERFORMANCE_SCORE"
HISTOLOGICAL_TYPE           "HISTOLOGICAL_TYPE"          
RACE                        "RACE"                       
ETHNICITY                   "ETHNICITY"                  
                            Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP   "Cox regression test"       "N=20"           
YEARS_TO_BIRTH              "Spearman correlation test" "N=9"            
GENDER                      "Wilcoxon test"             "N=26"           
RADIATION_THERAPY           "Wilcoxon test"             "N=1"            
KARNOFSKY_PERFORMANCE_SCORE "Spearman correlation test" "N=0"            
HISTOLOGICAL_TYPE           "Kruskal-Wallis test"       "N=0"            
RACE                        "Kruskal-Wallis test"       "N=0"            
ETHNICITY                   "Wilcoxon test"             "N=0"            
                            Associated with   
DAYS_TO_DEATH_OR_LAST_FUP   "shorter survival"
YEARS_TO_BIRTH              "older"           
GENDER                      "male"            
RADIATION_THERAPY           "yes"             
KARNOFSKY_PERFORMANCE_SCORE " "               
HISTOLOGICAL_TYPE           " "               
RACE                        " "               
ETHNICITY                   " "               
                            &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP   "N=12"                                                                                    
YEARS_TO_BIRTH              "N=5"                                                                                     
GENDER                      "N=26"                                                                                    
RADIATION_THERAPY           "N=1"                                                                                     
KARNOFSKY_PERFORMANCE_SCORE " "                                                                                       
HISTOLOGICAL_TYPE           " "                                                                                       
RACE                        " "                                                                                       
ETHNICITY                   " "                                                                                       
                            Associated with        
DAYS_TO_DEATH_OR_LAST_FUP   "longer survival" "N=8"
YEARS_TO_BIRTH              "younger"         "N=4"
GENDER                      "female"          "N=0"
RADIATION_THERAPY           "no"              "N=0"
KARNOFSKY_PERFORMANCE_SCORE " "               " "  
HISTOLOGICAL_TYPE           " "               " "  
RACE                        " "               " "  
ETHNICITY                   " "               " "  
[1] "vtyp==survival in basici table generation"
